{"meta":{"query_hash":"ed1a489e3176","filters":{"topic":"Bacterial Genetics and Biotechnology"},"cohort_total":1623,"direct_labels_cover":4,"predictions_cover":1623,"exported":1623,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/ed1a489e3176","api":"https://metacan.xera.ac/api/v1/cohort?topic=Bacterial+Genetics+and+Biotechnology"},"results":[{"id":"W1156023819","doi":"10.71781/3646","title":"Étude de la biogenèse de l'autotransporteur AIDA-I d'Escherichia coli","year":2012,"lang":"fr","type":"dissertation","venue":"Papyrus : Institutional Repository (Université de Montréal)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Escherichia coli; Chemistry; Biochemistry","score_opus":0.0035527234230446117,"score_gpt":0.17403795982112677,"score_spread":0.17048523639808216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1156023819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95430046,0.03668734,0.0005314032,0.00023516912,0.0011154304,0.00031147426,0.0001842533,0.000062446095,0.006572005],"genre_scores_gemma":[0.9791806,0.005090965,0.0023541308,0.00017222778,0.0006069692,0.000031869906,0.0012579687,0.00006884438,0.0112364255],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974025,0.0002797611,0.0004311732,0.0007180619,0.00028441782,0.0008840864],"domain_scores_gemma":[0.9983649,0.000034352357,0.00037445736,0.00052787556,0.00019419237,0.0005042087],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0003367059,0.00059879344,0.00043523635,0.00017115039,0.0025009057,0.00006267042,0.0006060796,0.0024435702,0.00006942836],"category_scores_gemma":[0.000047200178,0.0007244797,0.00042493216,0.00024403613,0.0006017552,0.000021828104,0.0001886195,0.000603101,0.0000358837],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007911027,0.0003882677,0.02870421,0.00015342484,0.000536814,0.0005774729,0.003726641,0.00036890508,0.9573044,0.0045602866,0.00024789094,0.0026405384],"study_design_scores_gemma":[0.00095852267,0.000255867,0.18061069,0.00010133849,0.00054014195,0.0007255911,0.0028095404,0.00016581599,0.592907,0.0000790037,0.22010933,0.000737152],"about_ca_topic_score_codex":0.014689303,"about_ca_topic_score_gemma":0.006149498,"teacher_disagreement_score":0.36439744,"about_ca_system_score_codex":0.0016985758,"about_ca_system_score_gemma":0.0024330758,"threshold_uncertainty_score":0.9995206},"labels":[],"label_agreement":null},{"id":"W1157234472","doi":"10.1063/1.4929597","title":"Dimerization of the type IV pilin from Pseudomonas aeruginosa strain K122-4 results in increased helix stability as measured by time-resolved hydrogen-deuterium exchange","year":2015,"lang":"en","type":"article","venue":"Structural Dynamics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Hydrogen–deuterium exchange; Pilin; Dimer; Antiparallel (mathematics); Monomer; Chemistry; Crystallography; Pilus; Deuterium; Helix (gastropod); Folding (DSP implementation); Pseudomonas aeruginosa; Strain (injury); Trimer; Stereochemistry; Hydrogen; Bacteria; Biochemistry; Polymer; Organic chemistry; Physics","score_opus":0.010166261779529165,"score_gpt":0.22203548033360374,"score_spread":0.21186921855407456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1157234472","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963247,0.00028520898,0.00004393365,0.000285025,0.00034379045,0.00034367808,0.0022745982,0.000016541639,0.0000824919],"genre_scores_gemma":[0.9959675,0.000049915703,0.00035309664,0.00007002409,0.000089325724,0.0000056411063,0.003373964,0.000022127835,0.00006840826],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998473,0.00020919452,0.00040760852,0.000437083,0.00021129369,0.0002618391],"domain_scores_gemma":[0.9989072,0.00001313453,0.00020319964,0.00061077956,0.00017568633,0.00009001576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024744877,0.00022441462,0.00025833672,0.000033915705,0.000041092037,0.000019158546,0.00039319543,0.0004245218,0.000018390147],"category_scores_gemma":[0.00030598047,0.0001772148,0.00007296805,0.00022668594,0.00021474871,0.0000063810435,0.00024245022,0.00015587587,0.0000034228663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006322143,0.000031240008,0.001889897,0.000008464586,0.000029850135,8.4114083e-7,0.00006254967,0.000027772638,0.99533856,0.000016394573,0.00008536917,0.001876836],"study_design_scores_gemma":[0.0027395766,0.00068153307,0.022075564,0.000023685154,0.000041898722,0.000008140648,0.00011614407,0.0070781573,0.96382886,0.0012030621,0.0017413816,0.0004619836],"about_ca_topic_score_codex":0.0011997671,"about_ca_topic_score_gemma":0.0014034885,"teacher_disagreement_score":0.031509697,"about_ca_system_score_codex":0.00006442884,"about_ca_system_score_gemma":0.00015642967,"threshold_uncertainty_score":0.72266096},"labels":[],"label_agreement":null},{"id":"W1162101633","doi":"10.1016/j.bbrc.2015.08.079","title":"Influence of GTP on system specific chaperone – Twin arginine signal peptide interaction","year":2015,"lang":"en","type":"article","venue":"Biochemical and Biophysical Research Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Translocase; GTP'; Chaperone (clinical); Biochemistry; Chemistry; Biophysics; Guanosine triphosphate; Dissociation constant; Biology; Enzyme; Receptor; Chromosomal translocation","score_opus":0.07296512491980926,"score_gpt":0.34482648840779645,"score_spread":0.2718613634879872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1162101633","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972081,0.00044574705,0.00002014388,0.0010650066,0.000020550322,0.00017259132,0.000030259049,0.000014836556,0.0010227622],"genre_scores_gemma":[0.9983814,0.0006166801,0.00060923066,0.000026691485,0.00014703292,0.000032636035,0.00010232474,0.000011075038,0.000072979135],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988023,0.00018697098,0.00022771866,0.0002952266,0.0002494798,0.00023829045],"domain_scores_gemma":[0.9984632,0.00008732273,0.00006178773,0.0008578527,0.0003565219,0.00017331423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039590258,0.00011806008,0.00015984,0.00007861554,0.00010952554,0.000023233659,0.00057370955,0.00019489808,0.0000024758442],"category_scores_gemma":[0.00016068234,0.00009859143,0.000047887963,0.0002397851,0.0008175133,0.0000047315434,0.00059544377,0.0003801089,0.000023970113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001862945,0.0002320493,0.00003942062,0.000017801445,0.000016805678,4.4283064e-7,0.000020333835,0.000006460127,0.99353516,0.00382899,0.0010251531,0.0010911147],"study_design_scores_gemma":[0.00036857594,0.0009804479,0.00091648306,0.00006652626,0.0000056714653,0.000006959464,0.00027177995,0.00017433622,0.96562713,0.00013473383,0.031317394,0.00012998309],"about_ca_topic_score_codex":0.00003679667,"about_ca_topic_score_gemma":0.000002868861,"teacher_disagreement_score":0.03029224,"about_ca_system_score_codex":0.000032389024,"about_ca_system_score_gemma":0.00006297395,"threshold_uncertainty_score":0.4020442},"labels":[],"label_agreement":null},{"id":"W1187532642","doi":"10.1128/9781555818319.ch10","title":"Transcription Regulation by the<i>Bacillus subtilis</i>Response Regulator Spo0A","year":2014,"lang":"en","type":"book-chapter","venue":"ASM Press eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Transcription (linguistics); Bacillus subtilis; Biology; Transcription factor; Response regulator; General transcription factor; Response element; Operon; Cell biology; Phosphorylation; Promoter; Biochemistry; Gene; Gene expression; Genetics; Mutant; Bacteria","score_opus":0.011904965347469047,"score_gpt":0.20334024644829132,"score_spread":0.19143528110082228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1187532642","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.21190791,0.011471983,0.0036051108,0.0018291661,0.004264948,0.004242869,0.0015869718,0.0004272725,0.76066375],"genre_scores_gemma":[0.27125856,0.00023328072,0.00007600643,0.00026755448,0.0005547685,0.000038828293,0.00044993765,0.00010723098,0.7270138],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99827844,0.00010594865,0.000405965,0.0006691313,0.0002227238,0.00031778097],"domain_scores_gemma":[0.9984336,0.0000210308,0.00027456848,0.0010729327,0.000111696594,0.0000861718],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00035331023,0.0004501043,0.00032804423,0.000050291528,0.00013453528,0.00006205415,0.00046848223,0.0014038652,0.00004090329],"category_scores_gemma":[0.000023575503,0.0003726656,0.0002318063,0.000005921784,0.00035349588,0.0000016583556,0.00014826,0.0003002925,0.000017206434],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081094954,0.0000071944073,2.8040418e-7,0.000022013139,0.00010100802,0.0000014990127,0.000022792517,0.0000024111123,0.9535362,0.009797906,0.014184761,0.021512987],"study_design_scores_gemma":[0.00031636423,0.00023905013,0.000018958814,0.000023712562,0.000065619126,0.000020117628,0.0000011000138,0.000008107627,0.34360328,0.0006714474,0.6547383,0.00029396667],"about_ca_topic_score_codex":0.000024817098,"about_ca_topic_score_gemma":0.00002420973,"teacher_disagreement_score":0.64055353,"about_ca_system_score_codex":0.000023476632,"about_ca_system_score_gemma":0.000060688028,"threshold_uncertainty_score":0.99989253},"labels":[],"label_agreement":null},{"id":"W1256885807","doi":"10.1128/jb.00460-15","title":"The Caulobacter crescentus Homolog of DnaA (HdaA) Also Regulates the Proteolysis of the Replication Initiator Protein DnaA","year":2015,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"DnaA; Caulobacter crescentus; Biology; DNA replication; SeqA protein domain; Cell biology; Origin of replication; Genetics; Biochemistry; DNA; Gene; Cell cycle","score_opus":0.012709982005679715,"score_gpt":0.239116760016744,"score_spread":0.2264067780110643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1256885807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99352974,0.00088006194,0.000036271307,0.004646462,0.0004015281,0.0004210621,0.000019776508,0.0000029820844,0.00006212098],"genre_scores_gemma":[0.99883735,0.00029028615,0.00029231905,0.000120187775,0.00027547454,0.00001810782,0.000009362124,0.000015571917,0.00014132832],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981644,0.00043379844,0.00078602275,0.00021266336,0.00016354585,0.00023952912],"domain_scores_gemma":[0.99724895,0.00003885815,0.0010806238,0.0009884376,0.00058295537,0.000060169186],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010657137,0.00016315517,0.00033340976,0.00004651242,0.00010347977,0.000018418552,0.0008865136,0.00037267714,0.000008382523],"category_scores_gemma":[0.0007203412,0.000077119366,0.00022692862,0.00015319155,0.0007450968,0.000006368325,0.00030901935,0.00026187618,0.0000013216082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041047248,0.000059892667,0.0018143993,0.000012251201,0.0001506169,0.0000011235852,0.000051261657,0.000008250833,0.99484175,0.00010869204,0.0006509355,0.0018903716],"study_design_scores_gemma":[0.00053397054,0.0011119739,0.030601803,0.000032257423,0.00006246692,0.00016136508,0.00010275078,0.0000068962136,0.919428,0.0005499013,0.047310725,0.000097878816],"about_ca_topic_score_codex":0.000019174342,"about_ca_topic_score_gemma":0.000030761465,"teacher_disagreement_score":0.07541372,"about_ca_system_score_codex":0.000022357744,"about_ca_system_score_gemma":0.00027379676,"threshold_uncertainty_score":0.31448364},"labels":[],"label_agreement":null},{"id":"W1278770815","doi":"10.1128/9781555815806.ch12","title":"Periplasmic Events in the Assembly of Bacterial Lipopolysaccharides","year":2014,"lang":"en","type":"book-chapter","venue":"ASM Press eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Periplasmic space; Microbiology; Computational biology; Biology; Biochemistry; Escherichia coli; Gene","score_opus":0.016072541108013857,"score_gpt":0.230565374084134,"score_spread":0.21449283297612015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1278770815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.53635246,0.0012336271,0.000096500866,0.0001060866,0.0016933762,0.0012126805,0.00021729984,0.00003156911,0.45905638],"genre_scores_gemma":[0.8868308,0.00040206086,0.00009530078,0.00011424188,0.0006946678,0.0000374244,0.00016446912,0.00006976096,0.11159125],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99872136,0.00005547801,0.00040559444,0.00041572048,0.0001612501,0.00024058325],"domain_scores_gemma":[0.9988801,0.000017367202,0.00028261097,0.0007307406,0.000055872653,0.00003334888],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021658033,0.00031256792,0.00035755578,0.00006467344,0.00003388915,0.000015355537,0.00067452627,0.0009293067,0.000020356554],"category_scores_gemma":[0.000022493386,0.00024310187,0.00016445904,0.0000046721325,0.00016146869,8.308336e-7,0.00027870756,0.0002594889,0.0000049731134],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017810384,0.000022198725,0.000009024165,0.00006226158,0.000120567325,0.000003778209,0.00006892266,0.0000018162233,0.9727468,0.01713197,0.0009918313,0.008662749],"study_design_scores_gemma":[0.00044417358,0.00040379426,0.00006286137,0.000071304574,0.000055516546,0.000018889508,0.0000047457597,0.0000029978867,0.3897553,0.0008083821,0.60806507,0.000306978],"about_ca_topic_score_codex":0.000071256945,"about_ca_topic_score_gemma":0.00013640344,"teacher_disagreement_score":0.6070732,"about_ca_system_score_codex":0.000007929019,"about_ca_system_score_gemma":0.00006302054,"threshold_uncertainty_score":0.99134064},"labels":[],"label_agreement":null},{"id":"W1464760312","doi":"10.1128/9781555818180.ch12","title":"Local Genetic Context, Supercoiling, and Gene Expression","year":2014,"lang":"en","type":"book-chapter","venue":"ASM Press eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"DNA supercoil; Plasmid; Transcription (linguistics); Gene; Biology; DNA; Genetics; RNA polymerase; Genome; Gene expression; Escherichia coli; DNA replication","score_opus":0.011943257704292214,"score_gpt":0.20919435611954842,"score_spread":0.1972510984152562,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1464760312","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.16047516,0.038715657,0.016780451,0.00015101644,0.0023039924,0.002328309,0.00048338898,0.00027420933,0.7784878],"genre_scores_gemma":[0.4968168,0.0027161606,0.0018198364,0.00042031292,0.0009871834,0.00004565522,0.00024250938,0.00020469254,0.49674684],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983675,0.000030875006,0.00035425636,0.0007859534,0.00014162113,0.000319815],"domain_scores_gemma":[0.99885637,0.000010270306,0.00015333528,0.0007525358,0.00008473126,0.00014277808],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000082590304,0.00045652263,0.00040172704,0.00005384712,0.00008642462,0.00004264102,0.0003243716,0.001466674,0.000024202245],"category_scores_gemma":[0.000011189668,0.00042809366,0.00012737776,0.000002264988,0.0004535482,8.0738164e-7,0.0005499063,0.0002877739,0.000010224273],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089694135,0.0000079868605,0.000004201622,0.000055995555,0.00009362467,0.0000148111885,0.000020723417,0.0000021251715,0.9152046,0.005153655,0.0017888239,0.0775638],"study_design_scores_gemma":[0.0003127753,0.00025171507,0.000007796886,0.00004801449,0.000044521443,0.00004575367,0.0000018040145,0.00000833955,0.45422024,0.00042690037,0.5443027,0.00032947314],"about_ca_topic_score_codex":0.000039758514,"about_ca_topic_score_gemma":0.000044331548,"teacher_disagreement_score":0.54251385,"about_ca_system_score_codex":0.000010147872,"about_ca_system_score_gemma":0.000049647,"threshold_uncertainty_score":0.99982965},"labels":[],"label_agreement":null},{"id":"W1479975926","doi":"10.1111/j.1365-2958.2011.07963.x","title":"The GtaR protein negatively regulates transcription of the <i>gtaRI</i> operon and modulates gene transfer agent (RcGTA) expression in <i>Rhodobacter capsulatus</i>","year":2011,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Rhodobacter; Biology; Operon; Mutant; Gene; Transcription (linguistics); Promoter; Mutagenesis; Transcription factor; Regulation of gene expression; Directed mutagenesis; Molecular biology; Gene expression; Genetics","score_opus":0.008076292720467407,"score_gpt":0.17834336904672646,"score_spread":0.17026707632625904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1479975926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963331,0.0020828692,0.0003837081,0.00030600844,0.00016623101,0.00062306796,0.000043543158,0.000008366517,0.000053085878],"genre_scores_gemma":[0.99837744,0.00034991905,0.0008520136,0.00019120394,0.000024169243,0.00004416839,0.000049693936,0.000027662943,0.00008370455],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984818,0.00027791286,0.0003786321,0.00045815163,0.000048180482,0.00035533664],"domain_scores_gemma":[0.9993126,0.000006445841,0.00008531463,0.0004930035,0.000062983054,0.00003967547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022106823,0.00024526234,0.00023468716,0.00004216624,0.00011063666,0.000013283788,0.00039462058,0.0004718177,0.000008187959],"category_scores_gemma":[0.000020258372,0.00015299882,0.00011953808,0.000113096256,0.000530806,0.000004626649,0.00017487057,0.00018783288,0.0000011197772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021231872,0.0000629042,0.000255567,0.000013873614,0.000039664614,0.0000024634367,0.00016794975,0.000010236211,0.9983219,0.0001326864,0.000022178376,0.0007582548],"study_design_scores_gemma":[0.0006686266,0.0003007398,0.003685806,0.000031761316,0.000019942247,0.00003262129,0.000033853346,0.000007525589,0.98869956,0.00027206223,0.0060580303,0.00018945026],"about_ca_topic_score_codex":0.00007998137,"about_ca_topic_score_gemma":0.00014955003,"teacher_disagreement_score":0.009622322,"about_ca_system_score_codex":0.000012726862,"about_ca_system_score_gemma":0.000036848487,"threshold_uncertainty_score":0.6239111},"labels":[],"label_agreement":null},{"id":"W1482702008","doi":"10.1111/j.1365-2958.2009.06808.x","title":"The crystal structure of the TolB box of colicin A in complex with TolB reveals important differences in the recruitment of the common TolB translocation portal used by group A colicins","year":2009,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; Wellcome Trust","keywords":"Colicin; Biology; Periplasmic space; Chromosomal translocation; Escherichia coli; Genetics; DNA; Plasmid","score_opus":0.010342323012302741,"score_gpt":0.22845859463838802,"score_spread":0.2181162716260853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1482702008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960396,0.00093085173,0.000034521283,0.0015810734,0.000043454103,0.0011155184,0.00022747625,0.0000021657447,0.000025291249],"genre_scores_gemma":[0.99917287,0.00013385489,0.00006514682,0.00046085354,0.000010651988,0.000019364907,0.000120787576,0.000009628188,0.000006839893],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99834645,0.000414546,0.00061299396,0.00026729563,0.000091381226,0.00026730637],"domain_scores_gemma":[0.99883324,0.000026056057,0.00043655685,0.0006370044,0.000050805873,0.00001635977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002384871,0.00020142349,0.0003765662,0.00003576667,0.000062168336,0.00000805718,0.0007553981,0.0003034651,0.0000034615837],"category_scores_gemma":[0.000021255435,0.0000929778,0.000100872734,0.00027902966,0.0005255306,0.000001763269,0.000087732085,0.00019438655,3.3659315e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017558366,0.00013645299,0.008029096,0.000012114707,0.000042219574,0.0000014519378,0.0002513569,0.0000093655435,0.99039614,0.00057504774,0.00012037142,0.0002508071],"study_design_scores_gemma":[0.00086487265,0.0011131496,0.060670413,0.000042332584,0.00002979599,0.000057819165,0.00025291502,0.000007303336,0.93491423,0.00022212532,0.0017006029,0.00012446324],"about_ca_topic_score_codex":0.00029548735,"about_ca_topic_score_gemma":0.0050057624,"teacher_disagreement_score":0.055481926,"about_ca_system_score_codex":0.000013623101,"about_ca_system_score_gemma":0.00007718674,"threshold_uncertainty_score":0.37915248},"labels":[],"label_agreement":null},{"id":"W1483119271","doi":"10.1111/j.1365-2958.2011.07785.x","title":"The Caulobacter crescentus chromosome replication origin evolved two classes of weak DnaA binding sites","year":2011,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"DnaA; Caulobacter crescentus; Biology; DNA replication; Origin of replication; SeqA protein domain; Pre-replication complex; Genetics; Origin recognition complex; Circular bacterial chromosome; DNA-binding protein; Conserved sequence; Cell biology; DNA; Eukaryotic DNA replication; Cell cycle; Gene","score_opus":0.01581997530746331,"score_gpt":0.24435372641197378,"score_spread":0.22853375110451046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1483119271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970506,0.0012205155,0.0003141527,0.00024678398,0.00029746958,0.0002703231,0.00005742995,0.000023604225,0.0005191261],"genre_scores_gemma":[0.9973882,0.0005192214,0.0012106257,0.00013395667,0.00008732767,0.000022782799,0.00038054306,0.000031161253,0.00022616817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99845904,0.00013994567,0.0003785901,0.0005644363,0.000042224397,0.00041573955],"domain_scores_gemma":[0.9985387,0.000013945034,0.00023797572,0.0010171294,0.0001397087,0.00005259013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002232366,0.00022581723,0.00022883737,0.00006560321,0.00011614288,0.000016723814,0.0005172235,0.00039054867,0.000042415904],"category_scores_gemma":[0.00008793333,0.00017345868,0.00013924146,0.00014342173,0.00040797415,0.000002834814,0.0002773462,0.00013668255,0.000027971875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010135712,0.00006117742,0.0019813308,0.000008777924,0.00010776516,0.0000033837885,0.000016739878,5.869129e-7,0.9957636,0.0006217337,0.0006130209,0.0007205338],"study_design_scores_gemma":[0.00041238323,0.00034084436,0.0009109294,0.000007718518,0.000029983392,0.00006113163,0.000023065719,0.0000029452074,0.8916694,0.00008915693,0.10626674,0.0001857224],"about_ca_topic_score_codex":0.00004542257,"about_ca_topic_score_gemma":0.00010065783,"teacher_disagreement_score":0.10565371,"about_ca_system_score_codex":0.000019872072,"about_ca_system_score_gemma":0.00006465266,"threshold_uncertainty_score":0.707344},"labels":[],"label_agreement":null},{"id":"W1487755042","doi":"10.1186/1471-2156-6-20","title":"Differential selection and mutation between dsDNA and ssDNA phages shape the evolution of their genomic AT percentage","year":2005,"lang":"en","type":"article","venue":"BMC Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; University of Ottawa","keywords":"Selection (genetic algorithm); Genetics; Mutation; Biology; Differential (mechanical device); Mutation Accumulation; DNA; Computational biology; Evolutionary biology; Mutation rate; Gene; Computer science; Physics; Artificial intelligence","score_opus":0.008887324363580685,"score_gpt":0.21835961259606557,"score_spread":0.20947228823248487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1487755042","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961301,0.0021236644,0.0013428065,0.00009421913,0.000059474783,0.00018425811,0.000032339027,0.000008225379,0.000024902733],"genre_scores_gemma":[0.9975913,0.0008180565,0.0010706508,0.000017356017,0.0003536784,0.000005700141,0.00005833388,0.000015292057,0.00006964335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930865,0.00005109817,0.0001815643,0.0002457135,0.000059404323,0.00015358879],"domain_scores_gemma":[0.9996679,0.000011111707,0.000092126145,0.00015777814,0.000034590306,0.00003649304],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006621724,0.00012948336,0.000115971605,0.000034791923,0.00010691577,0.000017659713,0.0000973663,0.00020799629,0.00001477802],"category_scores_gemma":[0.000007872559,0.0000994084,0.00003584622,0.000039747036,0.00013674748,0.0000019661304,0.00017922695,0.000059462465,0.0000014574052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032302836,0.00001510802,0.0365148,0.000013630497,0.000025356268,4.1448917e-8,0.00006131779,0.00001798858,0.94238865,0.00001937758,0.00001940776,0.020892039],"study_design_scores_gemma":[0.00038599537,0.000256577,0.4275125,0.000003231136,0.0000468716,0.000018092906,0.00008811992,0.00162891,0.56785333,0.0000546546,0.0020369762,0.000114746785],"about_ca_topic_score_codex":0.000013241089,"about_ca_topic_score_gemma":0.00026052675,"teacher_disagreement_score":0.3909977,"about_ca_system_score_codex":0.00002746829,"about_ca_system_score_gemma":0.000025035692,"threshold_uncertainty_score":0.4053757},"labels":[],"label_agreement":null},{"id":"W1492899677","doi":"10.1016/s0076-6879(03)70028-7","title":"Assay of Transcription Modulation by Spo0A of Bacillus subtilis","year":2003,"lang":"en","type":"article","venue":"Methods in enzymology on CD-ROM/Methods in enzymology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Bacillus subtilis; Transcription (linguistics); Modulation (music); Chemistry; Cell biology; Biology; Bacteria; Genetics; Physics; Philosophy","score_opus":0.028383427322123546,"score_gpt":0.35355344830732266,"score_spread":0.3251700209851991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1492899677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86164856,0.0017364337,0.13302398,0.00018579778,0.0013771072,0.0005143354,0.000064154316,0.000023133698,0.0014264679],"genre_scores_gemma":[0.55273664,0.00040829906,0.44633925,0.00015187565,0.00004249907,0.000052339543,0.00007048507,0.000043816846,0.00015481064],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9875234,0.00880999,0.0015564726,0.0011414433,0.00017524387,0.0007934585],"domain_scores_gemma":[0.997407,0.0007068083,0.0005901353,0.0010300608,0.00016793665,0.00009802538],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.007459474,0.0005167334,0.0012553155,0.0006982873,0.00004881974,0.000006706949,0.00059357256,0.0022737447,0.00016333851],"category_scores_gemma":[0.0026014296,0.0005351225,0.00025070235,0.0007334912,0.0008931893,0.000010256954,0.00013441547,0.0006880668,0.0000029111195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044945136,0.0005028707,0.0030873942,0.00005698358,0.00007195785,0.000009633054,0.00011944946,0.00030429536,0.9458643,0.0044003436,0.0001327541,0.04500054],"study_design_scores_gemma":[0.001986045,0.0019382425,0.023902452,0.000030683255,0.00003917014,0.00009887701,0.00009972031,0.000109054294,0.94701713,0.0092004165,0.015113314,0.0004649189],"about_ca_topic_score_codex":0.0001682986,"about_ca_topic_score_gemma":0.0003527023,"teacher_disagreement_score":0.31331527,"about_ca_system_score_codex":0.00007995065,"about_ca_system_score_gemma":0.00012976221,"threshold_uncertainty_score":0.99971},"labels":[],"label_agreement":null},{"id":"W1495985248","doi":"10.1016/s0076-6879(08)02211-8","title":"Chapter 11 Preparation of the Escherichia coli RNase E Protein and Reconstitution of the RNA Degradosome","year":2008,"lang":"en","type":"article","venue":"Methods in enzymology on CD-ROM/Methods in enzymology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Degradosome; RNase P; Escherichia coli; RNA; Chemistry; Biology; Molecular biology; Biochemistry; Gene","score_opus":0.03471040306299163,"score_gpt":0.34917495128625176,"score_spread":0.31446454822326014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1495985248","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98943526,0.0006712882,0.0069688484,0.00056170084,0.00091468706,0.0008890828,0.000017285844,0.0000103811935,0.0005314788],"genre_scores_gemma":[0.7246237,0.00022042355,0.27459362,0.00023347996,0.000057812256,0.00009158141,0.000004915903,0.000022315302,0.00015214179],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99379617,0.003988848,0.0009314258,0.00071841193,0.00012082468,0.00044433508],"domain_scores_gemma":[0.997969,0.0002798406,0.0005813437,0.0010130684,0.00010464788,0.00005215282],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0025620651,0.00034142323,0.0006835321,0.00022693034,0.00012598876,0.0000046143086,0.0006429261,0.0011583134,0.000026565553],"category_scores_gemma":[0.001652403,0.00024605563,0.00016782501,0.00045206142,0.0022632224,0.000007949411,0.00050556805,0.0005658888,7.7522964e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032444403,0.00018814078,0.006678588,0.000028577346,0.000036512472,0.0000059761933,0.00014499684,0.00007279005,0.97835004,0.0076930416,0.000018701801,0.0064582094],"study_design_scores_gemma":[0.0009520698,0.00078315946,0.092523344,0.000044770535,0.000023710018,0.00017398439,0.000037589954,0.000045993216,0.8975367,0.004679383,0.0029692445,0.00023006584],"about_ca_topic_score_codex":0.00019569903,"about_ca_topic_score_gemma":0.00076729374,"teacher_disagreement_score":0.2676248,"about_ca_system_score_codex":0.000040771472,"about_ca_system_score_gemma":0.00016520057,"threshold_uncertainty_score":0.99999917},"labels":[],"label_agreement":null},{"id":"W1496602679","doi":"10.1111/j.1365-2958.2005.04906.x","title":"Molecular architecture and function of the Omp85 family of proteins","year":2005,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":231,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Australian Research Council","keywords":"Bacterial outer membrane; Periplasmic space; Biology; Outer membrane efflux proteins; Protein family; Cell biology; Function (biology); Membrane protein; Bcl-2 family; Genetics; Membrane; Escherichia coli; Gene","score_opus":0.0075123127123928055,"score_gpt":0.2265306874054189,"score_spread":0.2190183746930261,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1496602679","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03601042,0.96170735,0.00076734496,0.000054579854,0.00022351452,0.00091558206,0.00021021866,0.000008098303,0.00010287662],"genre_scores_gemma":[0.013120144,0.98518175,0.00088974903,0.00016924177,0.00009931593,0.00005572854,0.00034490688,0.00007446381,0.00006472259],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980945,0.00031249246,0.00062034343,0.0006040936,0.000059554568,0.00030904575],"domain_scores_gemma":[0.9984305,0.000009591971,0.00056662207,0.0008617379,0.00008976048,0.000041801977],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00014289714,0.00044127117,0.0010175452,0.00012686187,0.00003722358,0.0000068643917,0.0005572054,0.0013762878,0.000006366736],"category_scores_gemma":[0.000044388566,0.0003070621,0.00051949103,0.000205952,0.00056620676,8.3177736e-7,0.0006213219,0.0003483134,0.000002014172],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017491573,0.000033138076,9.142791e-7,0.0007799471,0.00021133412,0.0000016005511,0.0000027087244,0.0000039671822,0.7341045,0.000121492005,0.00003888758,0.26468402],"study_design_scores_gemma":[0.0001921607,0.00035963103,0.000005373181,0.00040424027,0.00032893318,0.0001077868,0.000002244427,1.5881336e-7,0.23445049,0.00003485946,0.7638819,0.00023220667],"about_ca_topic_score_codex":0.000008620469,"about_ca_topic_score_gemma":0.000008151699,"teacher_disagreement_score":0.763843,"about_ca_system_score_codex":0.000012367832,"about_ca_system_score_gemma":0.00018683572,"threshold_uncertainty_score":0.99993813},"labels":[],"label_agreement":null},{"id":"W1514827201","doi":"10.1111/mmi.12433","title":"A new route for polar navigation","year":2013,"lang":"en","type":"letter","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Flagellum; Pilus; Biology; Organelle; Polar; Polar coordinate system; Motility; Cell biology; Bacteria; Computational biology; Gene; Genetics; Escherichia coli; Physics","score_opus":0.005201825531377036,"score_gpt":0.20831607415883852,"score_spread":0.20311424862746147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1514827201","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13289379,0.010130512,0.07392938,0.76573163,0.00597296,0.005689929,0.004649443,0.0002452359,0.0007571045],"genre_scores_gemma":[0.009175053,0.00028749224,0.036042504,0.8196661,0.010549125,0.000418796,0.10548719,0.00046621784,0.017907504],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99766034,0.00011221533,0.0004221873,0.0010073365,0.00005411768,0.0007437835],"domain_scores_gemma":[0.9986164,0.00001311806,0.00026855047,0.00085652055,0.00017009547,0.00007531024],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000093890056,0.00053821324,0.0004909031,0.00011989586,0.00007615578,0.000056536097,0.00067457545,0.0041853543,0.00007481959],"category_scores_gemma":[0.00004336859,0.0005320332,0.00037129462,0.00008665708,0.00014068624,0.0000019684505,0.00028210983,0.0006821942,0.00011325722],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015810752,0.000005963913,0.0000028732468,0.000028709575,0.000110437184,0.000013620036,0.0000020547013,6.707625e-7,0.5255544,0.000022886887,0.47320664,0.0010359111],"study_design_scores_gemma":[0.0003996209,0.00038111932,0.000002214651,0.000014978473,0.0000556564,0.00013827009,0.0000010753135,0.0000012779548,0.38695472,0.00021470629,0.61146,0.00037635412],"about_ca_topic_score_codex":0.00012188943,"about_ca_topic_score_gemma":0.00001009457,"teacher_disagreement_score":0.13859971,"about_ca_system_score_codex":0.000036506754,"about_ca_system_score_gemma":0.00023393382,"threshold_uncertainty_score":0.9997131},"labels":[],"label_agreement":null},{"id":"W1518596802","doi":"10.1111/j.1365-2958.2007.05733.x","title":"The small RNA RyhB activates the translation of <i>shiA</i> mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis","year":2007,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":220,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Biology; Translation (biology); Siderophore; Permease; Messenger RNA; RNA; Encoding (memory); Biochemistry; Genetics; Transporter; Gene; Neuroscience","score_opus":0.01171884972604796,"score_gpt":0.21662534042045042,"score_spread":0.20490649069440248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1518596802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99604297,0.002319572,0.00051891425,0.00048126228,0.000111519235,0.00029142835,0.000034781126,0.0000063026932,0.00019325981],"genre_scores_gemma":[0.99871457,0.00038734154,0.00062834565,0.00014722616,0.000030618427,0.000014202975,0.000049321927,0.000020807563,0.000007586946],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986467,0.00016119392,0.00048581135,0.00030324704,0.00004508955,0.00035796044],"domain_scores_gemma":[0.9990588,0.00014950379,0.00023894467,0.00043938356,0.00008655717,0.00002682215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005360802,0.00019114338,0.00026469794,0.00007829358,0.000079393096,0.000011318144,0.00043909426,0.00038613196,0.0000042213474],"category_scores_gemma":[0.00012843969,0.00012774607,0.00014157123,0.00018755102,0.00052003015,0.0000018571146,0.00013108517,0.00016663142,8.5854356e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029115606,0.000062321094,0.00034111904,0.000023113782,0.00007349164,0.0000070616243,0.000067874294,0.00001634934,0.99580264,0.00011499614,0.000016066553,0.0031838238],"study_design_scores_gemma":[0.0003797337,0.00018222009,0.00057139655,0.000023268305,0.000028198436,0.00002617364,0.00018107072,0.000010766892,0.99429375,0.00009407442,0.004071768,0.00013755304],"about_ca_topic_score_codex":0.00008436286,"about_ca_topic_score_gemma":0.0005991317,"teacher_disagreement_score":0.004055701,"about_ca_system_score_codex":0.000015071224,"about_ca_system_score_gemma":0.000054239234,"threshold_uncertainty_score":0.5209334},"labels":[],"label_agreement":null},{"id":"W1520257721","doi":"10.1046/j.1365-2958.2001.02419.x","title":"Competence development by <i>Haemophilus influenzae</i> is regulated by the availability of nucleic acid precursors","year":2001,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Biology; Gene; Nucleotide; Purine; Nucleic acid; Regulon; Biochemistry; Transcription factor; Cell biology; Genetics; Enzyme","score_opus":0.0052266177149840835,"score_gpt":0.20116690156957034,"score_spread":0.19594028385458626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1520257721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937506,0.0040841447,0.00042942364,0.0009033776,0.00014407911,0.00033952095,0.0001517423,0.000022635988,0.00017449661],"genre_scores_gemma":[0.9960764,0.00028866297,0.0007153521,0.002037367,0.000022801876,0.000021330343,0.00050910225,0.00003163437,0.00029733512],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99819416,0.00016182048,0.00049410824,0.0006238773,0.000068560956,0.00045745514],"domain_scores_gemma":[0.99879766,0.0000096752665,0.00022100346,0.00076703366,0.0001378294,0.00006682962],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022609043,0.00029566637,0.00031265052,0.000036503225,0.00010714063,0.000014408533,0.0006805466,0.0005913673,0.00008146511],"category_scores_gemma":[0.00004154396,0.00023466437,0.00011495923,0.00019683238,0.0006461653,0.00000246166,0.00036714674,0.0001831142,0.000027001577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011036632,0.0001047324,0.0004990499,0.000010530454,0.00011149879,0.000002596738,0.000048180194,0.0000024226556,0.98424053,0.0000139904005,0.012118731,0.002737389],"study_design_scores_gemma":[0.00033974406,0.00020269876,0.00012893371,0.000005673394,0.00001430685,0.00007601347,0.000010802953,0.000002236549,0.64812225,0.000023378323,0.3508951,0.00017881388],"about_ca_topic_score_codex":0.000026060947,"about_ca_topic_score_gemma":0.000013485185,"teacher_disagreement_score":0.33877638,"about_ca_system_score_codex":0.000023441082,"about_ca_system_score_gemma":0.00008398331,"threshold_uncertainty_score":0.95693356},"labels":[],"label_agreement":null},{"id":"W1529206118","doi":"10.1038/74048","title":"The structure of the ferric siderophore binding protein FhuD complexed with gallichrome.","year":2000,"lang":"en","type":"article","venue":"Nature Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":135,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Ferrichrome; Siderophore; Periplasmic space; Enterobactin; Biochemistry; Ligand (biochemistry); Binding site; Ferric; Chemistry; Binding protein; Escherichia coli; Plasma protein binding; Biology; Bacterial outer membrane; Receptor","score_opus":0.003419279300988173,"score_gpt":0.22132530347347565,"score_spread":0.21790602417248747,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1529206118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971183,0.0009386395,0.0000010706793,0.00091853424,0.00029494206,0.00042941366,0.00014021379,0.000013940836,0.00014496353],"genre_scores_gemma":[0.9986443,0.00008442898,0.00037902244,0.00015056315,0.00022387345,0.0000049942296,0.0001172033,0.00002078458,0.00037483624],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987305,0.00012452912,0.00024740183,0.0004015216,0.00011046311,0.0003856072],"domain_scores_gemma":[0.9990643,0.000015039023,0.00016339634,0.000617169,0.000097395205,0.000042649935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005560102,0.000256404,0.00022707616,0.000028639874,0.00031238145,0.000023525097,0.0007263489,0.00091979187,0.00013146993],"category_scores_gemma":[0.000043110005,0.000115663715,0.00009817142,0.00024479683,0.00069529156,0.0000021971982,0.00015849245,0.0005792057,0.0000018359793],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021017395,0.0000034618079,0.00094203843,0.0000074535296,0.00007135407,6.1217975e-7,0.000008328287,0.0000062046925,0.9921952,0.0008036288,0.00011202522,0.005639506],"study_design_scores_gemma":[0.00047862972,0.00048972113,0.009941734,0.000012656994,0.000020103014,0.00009064449,0.000022895036,0.0000059227827,0.958934,0.001106202,0.02868824,0.00020925705],"about_ca_topic_score_codex":0.000022176833,"about_ca_topic_score_gemma":0.00029194285,"teacher_disagreement_score":0.03326122,"about_ca_system_score_codex":0.000013255763,"about_ca_system_score_gemma":0.000072364346,"threshold_uncertainty_score":0.7094277},"labels":[],"label_agreement":null},{"id":"W1534021127","doi":"10.1002/0470028637.met160","title":"The Ferric Hydroxamate Uptake Receptor<scp>Fhu</scp><scp>A</scp>and Related<scp>Ton</scp><scp>B</scp>‐Dependent Transporters in the Outer Membrane of Gram‐Negative Bacteria","year":2004,"lang":"en","type":"other","venue":"Handbook of Metalloproteins","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Bacterial outer membrane; Ferrichrome; Colicin; Enterobactin; Escherichia coli; ATP-binding cassette transporter; Biochemistry; Periplasmic space; Chemistry; Biology; Transporter","score_opus":0.0077155474294172185,"score_gpt":0.20753941448756907,"score_spread":0.19982386705815186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1534021127","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.926272,0.02630314,0.00037018608,0.00019476988,0.0017686681,0.0047820485,0.0010420203,0.00015091691,0.03911626],"genre_scores_gemma":[0.55763525,0.104984745,0.0056036985,0.00071672467,0.0017834499,0.0014299577,0.0028137497,0.0021300565,0.3229024],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9933632,0.00056429993,0.0018856952,0.0017599834,0.0009314174,0.0014954048],"domain_scores_gemma":[0.99513394,0.00045349638,0.0018689714,0.002010145,0.0002300452,0.00030340013],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.001389503,0.0015402937,0.0018423124,0.0005464869,0.0002822675,0.00017188855,0.0020476794,0.003007044,0.0000606545],"category_scores_gemma":[0.0008254579,0.0011110688,0.0008231534,0.00057298964,0.0015183848,0.00002718827,0.00045845853,0.0012902318,0.00005515318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003579661,0.0004662684,0.000070098686,0.0005099056,0.0018872066,0.000079242214,0.0019972513,0.000033265642,0.98323363,0.0003376985,0.009767205,0.0015824133],"study_design_scores_gemma":[0.0024802787,0.000979756,0.00034899113,0.0006849904,0.00044606611,0.000085013366,0.0014415472,0.0000066225152,0.61448723,0.00046270154,0.37840146,0.00017533923],"about_ca_topic_score_codex":0.00049451104,"about_ca_topic_score_gemma":0.0012597493,"teacher_disagreement_score":0.36874643,"about_ca_system_score_codex":0.00008184356,"about_ca_system_score_gemma":0.00039347098,"threshold_uncertainty_score":0.9997346},"labels":[],"label_agreement":null},{"id":"W1536557591","doi":"10.1046/j.1365-2958.2003.t01-1-03329.x","title":"Lack of SeqA focus formation, specific DNA binding and proper protein multimerization in the <i>Escherichia coli</i> sequestration mutant <i>seqA2</i>","year":2003,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nexen (Canada)","funders":"Norges Forskningsråd; Kreftforeningen","keywords":"SeqA protein domain; Biology; Mutant; Escherichia coli; DNA; Cell biology; Nucleoid; Mutation; Genetics; Gene; DNA replication; Origin of replication","score_opus":0.012133899752074358,"score_gpt":0.2171445452432301,"score_spread":0.20501064549115575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1536557591","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959709,0.0004603935,0.0022373889,0.00030665423,0.000057606565,0.0006708587,0.00002736051,0.000007636348,0.00026122117],"genre_scores_gemma":[0.9976254,0.00015338366,0.0017085987,0.00022179182,0.000019943589,0.000041851334,0.0001923123,0.000016808182,0.000019908393],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988193,0.00027418594,0.00033298117,0.00030156435,0.000040491133,0.00023145773],"domain_scores_gemma":[0.999492,0.000005219476,0.00014838233,0.00026608867,0.000066205714,0.00002212702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028573163,0.00016617468,0.00017352933,0.000062520216,0.000051909254,0.00002088797,0.00015598623,0.00031842364,0.0000061783066],"category_scores_gemma":[0.00004043938,0.00012966793,0.00004079259,0.00018566467,0.00017681543,0.0000058761298,0.000047571782,0.00011473893,0.00000340301],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003604436,0.000053376545,0.000095269046,0.000018343691,0.000013317446,0.0000042370184,0.00006490698,0.000007164713,0.9982052,0.0011718605,0.000037130085,0.0002931732],"study_design_scores_gemma":[0.0005374884,0.00029588272,0.00008494947,0.000013605401,0.000008717195,0.000062960185,0.0000641547,0.000009530687,0.9751035,0.00010885619,0.023557154,0.00015321726],"about_ca_topic_score_codex":0.000007956859,"about_ca_topic_score_gemma":0.000019451689,"teacher_disagreement_score":0.023520024,"about_ca_system_score_codex":0.000011618756,"about_ca_system_score_gemma":0.000043167634,"threshold_uncertainty_score":0.5287705},"labels":[],"label_agreement":null},{"id":"W1538172011","doi":"10.1046/j.1365-2958.2001.02682.x","title":"Cellular location and temperature‐dependent assembly of IncHI1 plasmid R27‐encoded TrhC‐associated conjugative transfer protein complexes","year":2001,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research; Tabula Rasa HealthCare","keywords":"Green fluorescent protein; Biology; Plasmid; Subcellular localization; Escherichia coli; Fluorescence microscope; Fusion protein; Gene; Molecular biology; Cell biology; Genetics; Fluorescence; Recombinant DNA","score_opus":0.005065513663632739,"score_gpt":0.19847061199104837,"score_spread":0.19340509832741565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1538172011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995921,0.00094463397,0.0019540167,0.00029567248,0.00010229515,0.0005414642,0.0001204645,0.0000213622,0.00009908385],"genre_scores_gemma":[0.99828917,0.00015455464,0.00032937384,0.00023956122,0.00003649032,0.000033324377,0.0007728652,0.000031319774,0.00011336271],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984138,0.00023529073,0.00038705004,0.0005472653,0.000059774346,0.00035683205],"domain_scores_gemma":[0.9992817,0.000010171626,0.00011878217,0.0003216259,0.0002030569,0.00006463447],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019392252,0.00028266854,0.00037274422,0.00009507933,0.000076407865,0.000017960016,0.00023648929,0.00073692575,0.000019945528],"category_scores_gemma":[0.00006240548,0.00026976696,0.000085289605,0.00017019369,0.0003675076,0.0000035092532,0.0001314002,0.0001896167,0.0000044767494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018080663,0.00014072494,0.00015897397,0.00002319768,0.00015329504,0.000013829473,0.000042253836,0.000016391836,0.9986184,0.0003915571,0.00005429059,0.00020625524],"study_design_scores_gemma":[0.0012504548,0.0008422317,0.0003549875,0.000029333489,0.000039532053,0.00006304384,0.000042146985,0.00001397237,0.99420154,0.00008700741,0.0027849996,0.00029076147],"about_ca_topic_score_codex":0.000041951364,"about_ca_topic_score_gemma":0.00009626443,"teacher_disagreement_score":0.0044168946,"about_ca_system_score_codex":0.000019754878,"about_ca_system_score_gemma":0.000075050724,"threshold_uncertainty_score":0.99997544},"labels":[],"label_agreement":null},{"id":"W1541890580","doi":"10.1111/j.1365-2958.2005.04889.x","title":"Nuclear magnetic resonance solution structure of the periplasmic signalling domain of the TonB‐dependent outer membrane transporter FecA from <i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Bacterial outer membrane; Biology; Inner membrane; Transmembrane domain; Transmembrane protein; Biophysics; Sigma factor; Protein structure; Membrane transport protein; Biochemistry; Membrane protein; Cell biology; Crystallography; Escherichia coli; Receptor; Membrane; Chemistry; Gene; RNA polymerase","score_opus":0.0025809180517974767,"score_gpt":0.16620028576375515,"score_spread":0.16361936771195768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1541890580","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955245,0.0019769878,0.00019440867,0.0012669056,0.00031236184,0.00030180873,0.0003719296,0.0000073510832,0.00004372514],"genre_scores_gemma":[0.9968199,0.000094107345,0.0017159876,0.001073192,0.00008224879,0.0000036427525,0.00008279523,0.000030891388,0.000097199394],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986342,0.00017360922,0.00039570298,0.0004135421,0.00009039829,0.00029251145],"domain_scores_gemma":[0.9990398,0.000005606094,0.00020952955,0.0006228701,0.00009199021,0.000030168469],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008952975,0.00022654174,0.00027253825,0.000024372775,0.00007837153,0.000008300803,0.0006752967,0.0005581609,0.00010142174],"category_scores_gemma":[0.000015749529,0.00015354961,0.00021939861,0.00010825361,0.00042433562,0.0000024330375,0.00022678141,0.00022942785,0.0000022710042],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012904183,0.000048657097,0.0001987251,0.00001180027,0.000046158963,0.0000012776483,0.00010140748,0.000093701216,0.9985563,0.00007030321,0.00013756267,0.00060504203],"study_design_scores_gemma":[0.0006503689,0.00017169933,0.001080905,0.000022210266,0.000049346134,0.000018609016,0.00002016972,0.000020865964,0.9481258,0.00006871763,0.049605057,0.00016625201],"about_ca_topic_score_codex":0.00004424806,"about_ca_topic_score_gemma":0.00022096297,"teacher_disagreement_score":0.050430525,"about_ca_system_score_codex":0.000018088644,"about_ca_system_score_gemma":0.000067236935,"threshold_uncertainty_score":0.6261571},"labels":[],"label_agreement":null},{"id":"W154365953","doi":"","title":"Etude de la ségrégation de la région terminale du chromosome d'Escherichia coli","year":2013,"lang":"fr","type":"preprint","venue":"Thèses en ligne de l'Université Toulouse III (Université Toulouse III)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; European Regional Development Fund; Centre National de la Recherche Scientifique; Ministère de l'Enseignement Supérieur et de la Recherche; Fondation ARC pour la Recherche sur le Cancer; Agence Nationale de la Recherche","keywords":"Molecular biology; Escherichia coli; Biology; Genetics; Gene","score_opus":0.00323542967086667,"score_gpt":0.1928256208398452,"score_spread":0.18959019116897852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W154365953","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98354673,0.0016703465,0.0036387807,0.0024327247,0.0005936894,0.0010390515,0.00025056506,0.00031971416,0.0065084114],"genre_scores_gemma":[0.96407396,0.018009678,0.0063685304,0.00050310825,0.0011976177,0.000029647255,0.00054748193,0.0002301507,0.009039819],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9938724,0.0016150062,0.00065693574,0.0017341002,0.00043749437,0.0016840859],"domain_scores_gemma":[0.99610615,0.00030879464,0.00083289796,0.0016094043,0.0003702558,0.00077249337],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0009774378,0.0013273578,0.0011671263,0.0005125231,0.0008285159,0.00035609523,0.0023584203,0.0053071133,0.0007506587],"category_scores_gemma":[0.00012790476,0.0016864956,0.00075476355,0.0005720213,0.0013311956,0.000088729386,0.0030796768,0.0018135873,0.00012372244],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010428258,0.0008722333,0.0028227712,0.00028378368,0.0011300241,0.0013004856,0.007961431,0.00138478,0.95776004,0.0032627624,0.013926434,0.008252405],"study_design_scores_gemma":[0.009555948,0.0022930976,0.033691645,0.0006558536,0.002430029,0.001765106,0.008447339,0.003218989,0.37328824,0.0016186385,0.5589854,0.0040497314],"about_ca_topic_score_codex":0.0043777246,"about_ca_topic_score_gemma":0.00060924736,"teacher_disagreement_score":0.5844718,"about_ca_system_score_codex":0.0016895843,"about_ca_system_score_gemma":0.0014692162,"threshold_uncertainty_score":0.9999478},"labels":[],"label_agreement":null},{"id":"W1547075801","doi":"10.1186/1471-2180-6-29","title":"ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fonds De La Recherche Scientifique - FNRS; Institute for Catastrophic Loss Reduction","keywords":"UniProt; Biology; Database; Genome; Archaea; Computational biology; Genetics; Gene; Computer science","score_opus":0.007448018917484116,"score_gpt":0.1960198800600282,"score_spread":0.1885718611425441,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1547075801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99594957,0.00077297684,0.0025933082,0.0001075356,0.000075007156,0.00019943793,0.00018949485,0.0000071319673,0.000105546205],"genre_scores_gemma":[0.9949336,0.00009161173,0.0033515207,0.000063035106,0.00005063242,0.000009777811,0.0014408618,0.0000057855696,0.00005317235],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929726,0.000045184956,0.00028271903,0.00018341614,0.000018879882,0.00017253247],"domain_scores_gemma":[0.9996899,0.0000059286035,0.00007551504,0.00017411963,0.00003551649,0.000019021585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010380486,0.00010662003,0.00012997999,0.000088543726,0.000025489573,0.0000063342536,0.00010569023,0.0002605568,0.000021669573],"category_scores_gemma":[0.000013917551,0.000101652186,0.000034633653,0.000081330094,0.00018592333,0.0000059138406,0.0000515565,0.00006942953,0.0000032280873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059873473,0.00004651797,0.00096768554,0.000026447964,0.000006295717,5.0575403e-7,0.000016281281,0.000011848783,0.99514174,0.0033118716,0.00029775302,0.00011318902],"study_design_scores_gemma":[0.0017052914,0.00044516913,0.023321465,0.000019752191,0.000021470987,0.00031054587,0.000058707563,0.000029147943,0.94135445,0.00090913865,0.031535007,0.0002898418],"about_ca_topic_score_codex":0.00008538104,"about_ca_topic_score_gemma":0.0008091979,"teacher_disagreement_score":0.053787265,"about_ca_system_score_codex":0.000006053711,"about_ca_system_score_gemma":0.00006149734,"threshold_uncertainty_score":0.4145256},"labels":[],"label_agreement":null},{"id":"W1548629061","doi":"10.1073/pnas.1422446112","title":"Activation of the bacterial thermosensor DesK involves a serine zipper dimerization motif that is modulated by bilayer thickness","year":2015,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Zipper; Serine; Bilayer; Biophysics; Transmembrane protein; Cell biology; Chemistry; Phosphorylation; Helix (gastropod); Transmembrane domain; Biochemistry; Membrane; Biology; Receptor; Computer science","score_opus":0.03763538797252103,"score_gpt":0.26740377369837987,"score_spread":0.22976838572585884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1548629061","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99667263,0.00004888459,0.0000043650666,0.002856561,0.000052303567,0.00016314807,0.00003262794,0.0000037515604,0.00016573862],"genre_scores_gemma":[0.99929017,0.00004696162,0.00028005426,0.00020474015,0.000066726694,0.0000045788097,0.0000022648096,0.00000541554,0.00009908412],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990268,0.000012158746,0.00021320424,0.00020241672,0.00044234353,0.00010312565],"domain_scores_gemma":[0.9992337,0.0000087041635,0.000397839,0.000021221826,0.00031764773,0.000020847368],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040749751,0.00009144195,0.00011059954,0.000044311633,0.0000756969,0.000014136979,0.0005493638,0.00021619859,0.00000637141],"category_scores_gemma":[0.00019011395,0.00005236928,0.00005392714,0.00035175835,0.0005829268,0.00002635112,0.00017518946,0.00007297432,1.8549277e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042449672,0.000031304102,0.0023282373,0.000013910181,0.000019122172,3.027956e-10,0.00008447941,0.00003078437,0.99657565,0.0003117926,0.00036718513,0.00019508325],"study_design_scores_gemma":[0.00019496283,0.00007243866,0.017409224,0.000024432076,0.000009759647,0.0000019007499,0.00007179976,0.00023037351,0.9790882,0.0021047213,0.00072920154,0.00006297598],"about_ca_topic_score_codex":0.000009788952,"about_ca_topic_score_gemma":1.2161932e-7,"teacher_disagreement_score":0.017487442,"about_ca_system_score_codex":0.000009751704,"about_ca_system_score_gemma":0.000041410833,"threshold_uncertainty_score":0.21478182},"labels":[],"label_agreement":null},{"id":"W1556738101","doi":"10.1016/s0969-2126(01)00675-x","title":"Structure of Thermotoga maritima Stationary Phase Survival Protein SurE","year":2001,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Thermotoga maritima; Thermostability; Tetramer; Biochemistry; Active site; Biology; Gene; Protein structure; Protein subunit; Escherichia coli; Enzyme","score_opus":0.00588619003140328,"score_gpt":0.24376439501190744,"score_spread":0.23787820498050416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1556738101","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977969,0.00026590834,0.00014452217,0.0002015179,0.00023567466,0.00028444754,0.0008306597,0.000015271997,0.00022512818],"genre_scores_gemma":[0.99705905,0.000053373482,0.0015179742,0.000065671295,0.0003052941,0.0000031896743,0.00070262374,0.000025287685,0.0002675397],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904925,0.00005081553,0.00021346667,0.00031914123,0.00013638046,0.00023097367],"domain_scores_gemma":[0.99932826,0.000003770315,0.000116427655,0.00037874893,0.00011921581,0.000053568896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036664616,0.00018883543,0.00018886461,0.000045657107,0.000053498054,0.000012882467,0.00024609052,0.0004516815,0.00043643537],"category_scores_gemma":[0.000031412445,0.00016062024,0.00006644619,0.00012819264,0.00013642656,0.0000028957152,0.0001018113,0.00015253747,9.659902e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024683843,0.000032961645,0.00080861093,0.00002139757,0.00005151598,0.00000623974,0.000017656774,0.00001026544,0.99015754,0.00035621566,0.0002121145,0.00807863],"study_design_scores_gemma":[0.0012193485,0.00050872564,0.0050812215,0.000008957084,0.000016487225,0.000045141765,0.000044129953,0.000011002329,0.9654303,0.0023165175,0.025099423,0.000218726],"about_ca_topic_score_codex":0.000017874483,"about_ca_topic_score_gemma":0.0000963889,"teacher_disagreement_score":0.024887308,"about_ca_system_score_codex":0.000006729095,"about_ca_system_score_gemma":0.00007173135,"threshold_uncertainty_score":0.6549904},"labels":[],"label_agreement":null},{"id":"W1556784368","doi":"10.1186/1471-2164-7-73","title":"A high-throughput screen identifying sequence and promiscuity characteristics of the loxP spacer region in Cre-mediated recombination","year":2006,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency","funders":"BC Cancer Agency; Michael Smith Health Research BC","keywords":"Cre recombinase; Biology; Genetics; Cre-Lox recombination; Insert (composites); FLP-FRT recombination; Recombination; Site-specific recombination; Recombinase; Inverted repeat; DNA; Homologous recombination; Genome; Genetic recombination; Gene; Transgene","score_opus":0.020153249090851894,"score_gpt":0.23202043187012186,"score_spread":0.21186718277926997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1556784368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984773,0.000121460704,0.00071204646,0.00022179483,0.00013521555,0.00025696028,0.000037325724,0.000006218555,0.00003171351],"genre_scores_gemma":[0.99775815,0.000277864,0.0015401737,0.00003408505,0.00009209565,0.000007030229,0.00016487422,0.000013996581,0.00011174587],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99921983,0.000053221822,0.0002608911,0.00025313467,0.000057201367,0.00015569534],"domain_scores_gemma":[0.9994464,0.0000075826683,0.00019323229,0.00027962687,0.000054786193,0.000018372915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014334019,0.000110232795,0.00014324528,0.000037177393,0.000042373304,0.000020510275,0.00014528199,0.00024508196,0.0000017077886],"category_scores_gemma":[0.000061056875,0.000093565526,0.000036190686,0.000095956464,0.0001305652,0.000003363871,0.00018570562,0.00008762561,9.928605e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004458435,0.00003845442,0.028797291,0.000027237536,0.000006153258,8.2044954e-7,0.000018587529,0.000014234555,0.969868,0.00029409764,0.000070783804,0.00081974204],"study_design_scores_gemma":[0.00081634475,0.00012049445,0.46688592,0.00002529385,0.000018676536,0.000017111306,0.000030257137,0.00019581366,0.52789366,0.0012559717,0.0025333927,0.0002070265],"about_ca_topic_score_codex":0.00038771343,"about_ca_topic_score_gemma":0.0011321305,"teacher_disagreement_score":0.44197434,"about_ca_system_score_codex":0.00003003927,"about_ca_system_score_gemma":0.000069148206,"threshold_uncertainty_score":0.38154915},"labels":[],"label_agreement":null},{"id":"W1557784739","doi":"10.1111/j.1365-2958.2012.07973.x","title":"A structural motif is the recognition site for a new family of bacterial protein <i>O</i>‐glycosyltransferases","year":2012,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Armand Frappier Museum; University of Alberta; Université de Montréal; Cegep de Saint Hyacinthe","funders":"","keywords":"Biology; Peptide sequence; Biochemistry; Glycosylation; Bacterial adhesin; Consensus sequence; Sequence motif; Escherichia coli; Glycosyltransferase; Structural motif; Sequence alignment; Genetics; Gene","score_opus":0.011867619582560357,"score_gpt":0.2157136053687542,"score_spread":0.20384598578619384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1557784739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99429065,0.0012426797,0.002163321,0.00046164452,0.00038428922,0.00085065357,0.000562215,0.000012562279,0.000031979886],"genre_scores_gemma":[0.9942785,0.00004779446,0.0032030009,0.0007228941,0.00039980377,0.000057596266,0.0011664528,0.000031745043,0.000092251605],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988255,0.00009531861,0.00029742104,0.0003149655,0.000035411984,0.0004313773],"domain_scores_gemma":[0.99934345,0.000011523877,0.00012086399,0.00036144993,0.00009555322,0.000067172165],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000143886,0.0002176534,0.00022999279,0.000043353026,0.000066294175,0.000013421295,0.00024820468,0.0004316268,0.00005107931],"category_scores_gemma":[0.00005209855,0.00016459063,0.00019100371,0.00008227158,0.00018200859,0.0000037649368,0.00010087222,0.00009466361,0.000008972597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031541812,0.000032149197,0.000079397134,0.000020700922,0.00008835624,3.339731e-7,0.00006237493,6.904126e-7,0.99401885,0.000060372036,0.0011096686,0.004211677],"study_design_scores_gemma":[0.0007873245,0.0005604992,0.00018733967,0.000010152649,0.000047813613,0.000041458577,0.000015537998,0.0000018843284,0.91927224,0.00013976009,0.07874222,0.00019373253],"about_ca_topic_score_codex":0.0000360315,"about_ca_topic_score_gemma":0.000014882387,"teacher_disagreement_score":0.077632554,"about_ca_system_score_codex":0.000007833562,"about_ca_system_score_gemma":0.00007212547,"threshold_uncertainty_score":0.6711811},"labels":[],"label_agreement":null},{"id":"W156148924","doi":"10.1016/s0070-2153(03)01010-x","title":"Plasmid and Chromosome Traffic Control: How ParA and ParB Drive Partition","year":2003,"lang":"en","type":"review","venue":"Current topics in developmental biology/Current Topics in Developmental Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Metabolome; Biology; Inflammatory bowel disease; Metabolite; Microbiome; Metabolomics; Inflammation; Disease; Immunology; Microbiology; Genetics; Bioinformatics; Internal medicine; Biochemistry; Medicine","score_opus":0.05258743197468904,"score_gpt":0.3070271216572687,"score_spread":0.2544396896825797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W156148924","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17433135,0.82065713,0.000034008364,0.00020202679,0.0028746007,0.0014919431,0.00029071863,0.0000370123,0.00008117602],"genre_scores_gemma":[0.017693134,0.97645473,0.0011627323,0.000088269764,0.00040613196,0.00047431263,0.0035903812,0.000058725447,0.0000715905],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9949336,0.00052358996,0.001376614,0.0018463979,0.00013054545,0.0011892363],"domain_scores_gemma":[0.99892086,0.00006813885,0.00038982806,0.00034522364,0.00006091023,0.0002150237],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00052083906,0.0011333566,0.0018593338,0.00054561626,0.00017275612,0.000072840245,0.00060365855,0.0018859006,0.000033654076],"category_scores_gemma":[0.00013579878,0.0009599081,0.00019439342,0.00032572311,0.0008476369,0.000017503795,0.00090136763,0.0011282387,0.000018118013],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004085657,0.00028466227,0.010005747,0.0014574953,0.00018036283,0.000012992911,0.00010438635,2.7349842e-7,0.0019337754,0.0007392047,0.00020723781,0.98503304],"study_design_scores_gemma":[0.0017451785,0.0002735263,0.0007777355,0.0010503617,0.0000762452,0.0001873486,0.000047783244,0.0000040247496,0.0011222597,0.00037945688,0.9930719,0.0012641624],"about_ca_topic_score_codex":0.00000395715,"about_ca_topic_score_gemma":0.00014663996,"teacher_disagreement_score":0.99286467,"about_ca_system_score_codex":0.00035706637,"about_ca_system_score_gemma":0.0005192451,"threshold_uncertainty_score":0.99940985},"labels":[],"label_agreement":null},{"id":"W1562788511","doi":"10.1139/o06-148","title":"VirB8: a conserved type IV secretion system assembly factor and drug targetThis paper is one of a selection of papers published in this Special Issue, entitled CSBMCB — Membrane Proteins in Health and Disease.","year":2006,"lang":"en","type":"review","venue":"Biochemistry and Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Secretion; Biology; Cell biology; Virulence; Virulence factor; Pilus; Cell envelope; Effector; Type three secretion system; Inner membrane; Bacterial outer membrane; Multiprotein complex; Biochemistry; Gene; Escherichia coli","score_opus":0.00907238159623411,"score_gpt":0.234191706780851,"score_spread":0.2251193251846169,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1562788511","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2792168,0.7188159,0.0000011942685,0.00013105238,0.00014866742,0.0007867519,0.00033867403,0.00000937614,0.0005515611],"genre_scores_gemma":[0.11889402,0.8788578,0.00011189875,0.000044744447,0.0003770395,0.000043511252,0.0010860896,0.000026982187,0.00055791484],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980323,0.00020360453,0.00074069726,0.0006796666,0.0000705582,0.00027317207],"domain_scores_gemma":[0.9990048,0.000021766315,0.0005296848,0.00024650936,0.00006574509,0.00013149774],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024484497,0.00033678507,0.0010149574,0.00012145366,0.00003394003,0.000017010185,0.00013311367,0.0009614526,0.00046409783],"category_scores_gemma":[0.00007705814,0.000304474,0.00009422131,0.00021015682,0.0002323025,0.0000047121093,0.00013952263,0.00022719325,5.6777156e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022386595,0.00014808659,0.0005006755,0.0201382,0.00007012553,0.0000017368957,0.000026135876,5.066519e-8,0.96289444,0.000014893684,0.00046058607,0.01552119],"study_design_scores_gemma":[0.0011092034,0.00060379144,0.00012611598,0.0020167434,0.000111656394,0.000015316955,0.000052747364,0.000011177065,0.26279387,0.0000137498855,0.73262715,0.0005184792],"about_ca_topic_score_codex":0.00028809143,"about_ca_topic_score_gemma":0.000093266885,"teacher_disagreement_score":0.7321665,"about_ca_system_score_codex":0.000039360486,"about_ca_system_score_gemma":0.0004144919,"threshold_uncertainty_score":0.99994075},"labels":[],"label_agreement":null},{"id":"W1562814008","doi":"10.1111/j.1751-7915.2011.00327.x","title":"Bacterial persistence increases as environmental fitness decreases","year":2012,"lang":"en","type":"article","venue":"Microbial Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":176,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; National Institute of General Medical Sciences; National Institutes of Health; Keio University","keywords":"rpoS; Multidrug tolerance; Transcriptome; Biofilm; Persistence (discontinuity); Microbiology; Escherichia coli; Biology; Osmotic shock; Hydrogen peroxide; Gene; Bacteria; Biochemistry; Genetics; Gene expression; Promoter","score_opus":0.007426438297556364,"score_gpt":0.19977829149292622,"score_spread":0.19235185319536985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1562814008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969089,0.0011880011,0.00006848961,0.0005504658,0.0006525489,0.00021927692,0.00012202132,0.00009140562,0.00019888529],"genre_scores_gemma":[0.9963618,0.00074378966,0.001018326,0.00037548022,0.0007021057,0.000020489459,0.0004513275,0.00003925593,0.00028745364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983724,0.000064560096,0.0002699391,0.0005025999,0.00008260453,0.0007078975],"domain_scores_gemma":[0.9991128,0.000009286268,0.00011379746,0.0005949129,0.000016050295,0.00015319287],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012311542,0.00030936796,0.00025684602,0.00012298838,0.00015305918,0.000026059231,0.0004900072,0.0011710189,0.0004949882],"category_scores_gemma":[0.000098195844,0.00030693616,0.00013953933,0.00011771861,0.00063072285,0.000008262174,0.000578418,0.00019505195,0.00025260678],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001459392,0.0002799779,0.0016561834,0.0000060717334,0.000053686417,0.0000042027646,0.000011482922,2.8627153e-7,0.99157286,0.00019876847,0.0010617207,0.005008807],"study_design_scores_gemma":[0.0004594905,0.00037194058,0.0013337908,0.0000056746844,0.000028770808,0.00036365862,0.00007374393,5.1153927e-7,0.7646833,0.000019831608,0.23238264,0.0002766266],"about_ca_topic_score_codex":0.000080786725,"about_ca_topic_score_gemma":0.000031876112,"teacher_disagreement_score":0.23132092,"about_ca_system_score_codex":0.000036648406,"about_ca_system_score_gemma":0.00005598287,"threshold_uncertainty_score":0.99993825},"labels":[],"label_agreement":null},{"id":"W1567614435","doi":"10.3389/fmicb.2015.00610","title":"Redefining bacterial origins of replication as centralized information processors","year":2015,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Circular bacterial chromosome; Chromosome; DNA replication; Bacterial genome size; Bacteria; Replication (statistics); Cell cycle; Origin of replication; Genetics; Bacterial cell structure; Chromosome segregation; Genome; Cell biology; DNA; Evolutionary biology; Computational biology; Cell; Gene","score_opus":0.0153532782304191,"score_gpt":0.27938205705220553,"score_spread":0.26402877882178644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1567614435","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008436075,0.98759055,0.00020816195,0.000029791869,0.0022004913,0.00086605514,0.00041611947,0.00001967176,0.00023310984],"genre_scores_gemma":[0.00025191615,0.9872295,0.0038542647,0.000031851887,0.00016336014,0.000068613015,0.008310356,0.000028837925,0.00006129095],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99807775,0.00016942907,0.0008820449,0.0004890316,0.000042669588,0.00033907456],"domain_scores_gemma":[0.9984004,0.0000055187647,0.0007411216,0.00067562185,0.0001273625,0.00004997079],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00038993073,0.0003272729,0.0011196049,0.00028054346,0.000023513125,0.000015343592,0.0004899148,0.0015400801,0.000016250604],"category_scores_gemma":[0.0001932432,0.00029536374,0.0001770831,0.00024909494,0.00018633725,0.000006408227,0.00019255246,0.00022997365,0.000013913107],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027561947,0.0000777253,0.000055289885,0.0026010256,0.00024372926,0.0000016419458,0.00006444083,0.0000015091238,0.076408155,0.00022916691,0.015044715,0.904997],"study_design_scores_gemma":[0.0004959668,0.0002656741,0.0000015245415,0.00039411982,0.000092832284,0.000061552026,0.000021648544,6.278758e-7,0.0068319486,0.00005217921,0.99150145,0.00028046107],"about_ca_topic_score_codex":0.000032853106,"about_ca_topic_score_gemma":0.000009777877,"teacher_disagreement_score":0.97645676,"about_ca_system_score_codex":0.00014650573,"about_ca_system_score_gemma":0.0005651963,"threshold_uncertainty_score":0.9999499},"labels":[],"label_agreement":null},{"id":"W1572546670","doi":"10.3389/fmicb.2015.00586","title":"Cell age dependent concentration of Escherichia coli divisome proteins analyzed with ImageJ and ObjectJ","year":2015,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Novo Nordisk Fonden; Keio University; European Commission; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Wellcome Trust; Connecticut Health Foundation","keywords":"Escherichia coli; Microbiology; Cell; Escherichia coli Proteins; Biology; Chemistry; Biochemistry; Gene","score_opus":0.004955384992603289,"score_gpt":0.19091661666571297,"score_spread":0.18596123167310968,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1572546670","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99458253,0.001517908,0.0030941856,0.000057614063,0.00019129396,0.00033312384,0.000037808608,0.000006655904,0.00017889339],"genre_scores_gemma":[0.98241174,0.0002158773,0.01697503,0.00006331204,0.00003824967,0.000016484839,0.00014345694,0.000012885544,0.00012297927],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999108,0.00009126225,0.00021402916,0.000323099,0.000029730127,0.00023385248],"domain_scores_gemma":[0.9995818,0.000002589496,0.00012241107,0.00017846207,0.000060755323,0.00005398334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014696948,0.00014388973,0.00025480628,0.000054674092,0.000019024774,0.000009747853,0.00014478843,0.00030869807,0.000002568388],"category_scores_gemma":[0.000020452122,0.00012288983,0.000024354562,0.00009737253,0.0003153546,0.0000028263805,0.00010357333,0.00010357423,7.3102444e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029615223,0.00006691517,0.012521566,0.000015028644,0.000032844648,0.000009638538,0.00006054017,0.000010914931,0.9860093,0.0000076280453,0.000697159,0.00027232268],"study_design_scores_gemma":[0.0018610561,0.0011454568,0.0019730784,0.00000822798,0.000019778056,0.000020941108,0.00017713291,0.000020799187,0.9912626,0.00006272865,0.0032657715,0.00018243199],"about_ca_topic_score_codex":0.00004042128,"about_ca_topic_score_gemma":0.000066491295,"teacher_disagreement_score":0.013880844,"about_ca_system_score_codex":0.000018909652,"about_ca_system_score_gemma":0.00008435088,"threshold_uncertainty_score":0.5011302},"labels":[],"label_agreement":null},{"id":"W1573931875","doi":"10.4161/cib.14162","title":"Regulation of symmetric bacterial cell division by MinE","year":2011,"lang":"en","type":"article","venue":"Communicative & Integrative Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Cell division; Division (mathematics); Bacterial cell structure; Cell; Cell biology; Bacterial protein; Protein structure; Bacteria; Cell structure; Computational biology; Biology; Chemistry; Biophysics; Genetics; Biochemistry; Mathematics","score_opus":0.020148434866193325,"score_gpt":0.25346916117583024,"score_spread":0.2333207263096369,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1573931875","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9853611,0.001829482,0.001481246,0.00006287908,0.00019563023,0.00024241519,0.00017263739,0.000014603518,0.010640036],"genre_scores_gemma":[0.99414384,0.00096136116,0.003573784,0.000046955367,0.000050683833,0.000024741808,0.000913747,0.0000183611,0.00026653282],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986336,0.00038101056,0.0003757613,0.00034241652,0.00004642902,0.00022074628],"domain_scores_gemma":[0.9984853,0.000045230114,0.00033610425,0.0008203791,0.00026231393,0.000050666793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019955661,0.00022812227,0.00031619545,0.00011024354,0.000068238456,0.0000050318995,0.0007235776,0.00045767918,0.00020039015],"category_scores_gemma":[0.00014264254,0.0001754659,0.00010849289,0.00021926282,0.00068101013,0.0000041189155,0.0005243042,0.00017928761,0.000011097856],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019839277,0.00021473745,0.002232188,0.0000046661175,0.000051399275,7.852368e-8,0.00016400067,5.5858887e-8,0.98867214,0.0027182763,0.000993168,0.004750878],"study_design_scores_gemma":[0.00049299235,0.0019194965,0.011637903,0.000011619976,0.000015605428,0.0000013768819,0.00017987966,0.000007358622,0.9557181,0.0010638958,0.028764505,0.00018728511],"about_ca_topic_score_codex":0.00013523172,"about_ca_topic_score_gemma":0.00005933487,"teacher_disagreement_score":0.03295408,"about_ca_system_score_codex":0.000017187567,"about_ca_system_score_gemma":0.00004058423,"threshold_uncertainty_score":0.7155292},"labels":[],"label_agreement":null},{"id":"W1574079093","doi":"10.1186/1471-2105-4-18","title":"Genome wide identification of regulatory motifs in Bacillus subtilis","year":2003,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Division of Materials Research; Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Regulon; Operon; Biology; Genetics; Genome; Gene; Computational biology; DNA binding site; Transcription factor; Promoter; Gene expression","score_opus":0.009240679745021633,"score_gpt":0.2097476990422918,"score_spread":0.20050701929727016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1574079093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99067163,0.0002506679,0.007739494,0.000017419365,0.0001492346,0.00018819828,0.000023752422,0.0000092185555,0.0009503848],"genre_scores_gemma":[0.98829824,0.0001583285,0.011178896,0.00004061645,0.000020431567,0.000007351932,0.000075094234,0.000011429085,0.00020964276],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898094,0.00003237404,0.0005594419,0.00013803986,0.00009750482,0.00019170226],"domain_scores_gemma":[0.99921525,0.000007874582,0.00020980115,0.00046136917,0.00006724626,0.00003848188],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031987717,0.000118012504,0.0001487646,0.00010003552,0.000024074883,0.000013190468,0.0001823385,0.00027451076,0.00001423991],"category_scores_gemma":[0.00016971008,0.00011573579,0.00005934468,0.00015519258,0.000109351015,0.0000055243718,0.00005855383,0.000064680564,0.000014212668],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028680068,0.000065735156,0.00942741,0.00012377824,0.000017396193,3.5046745e-7,0.00011070525,0.00041185258,0.98816425,0.00057865283,0.000073163894,0.0009980202],"study_design_scores_gemma":[0.00070960226,0.00017074768,0.08762012,0.000012555436,0.0000133886915,0.000013149442,0.00027368183,0.0015858974,0.8915279,0.0002465343,0.017566027,0.00026040382],"about_ca_topic_score_codex":0.0000034942245,"about_ca_topic_score_gemma":0.000030254381,"teacher_disagreement_score":0.09663636,"about_ca_system_score_codex":0.000016210884,"about_ca_system_score_gemma":0.000089416615,"threshold_uncertainty_score":0.47195688},"labels":[],"label_agreement":null},{"id":"W157722414","doi":"10.1007/0-306-46821-2_5","title":"Assembly Pathways for Biosynthesis of A-Band and B-Band Lipopolysaccharide in Pseudomonas aeruginosa","year":2005,"lang":"en","type":"book-chapter","venue":"Kluwer Academic Publishers eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Pseudomonas aeruginosa; Lipopolysaccharide; Bacteria; Biosynthesis; Microbiology; Antimicrobial; Biology; Bacterial cell structure; Computational biology; Chemistry; Cell biology; Biochemistry; Enzyme; Immunology; Genetics","score_opus":0.01772324358712842,"score_gpt":0.2307545613000481,"score_spread":0.21303131771291967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W157722414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6182382,0.010584771,0.00018921381,0.0018431896,0.0014148066,0.0030497687,0.0011841271,0.000115031835,0.3633809],"genre_scores_gemma":[0.8948138,0.0017195661,0.001006881,0.0006628778,0.0014219817,0.00012938879,0.0003060381,0.00024017232,0.0996993],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975103,0.000027105885,0.00079905556,0.0009257824,0.00020795775,0.0005298017],"domain_scores_gemma":[0.9986119,0.000057892183,0.00047715634,0.0005557777,0.0001381299,0.00015913631],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00046587203,0.0005601987,0.0007186632,0.0003644301,0.000057394467,0.000077390236,0.00061342743,0.0032308244,0.00002480261],"category_scores_gemma":[0.00013926052,0.0005572676,0.0002301627,0.000022787812,0.000411906,0.00001483016,0.00021560429,0.0007259717,0.0000019603854],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020573958,0.000016843263,0.00008554456,0.00010049151,0.00015666531,0.0000032301177,0.000046507783,6.7948747e-7,0.95804083,0.0046086144,0.005325952,0.03140893],"study_design_scores_gemma":[0.00092895166,0.0002712464,0.000040259616,0.00013586564,0.00009892836,0.000025835256,0.000021987158,0.0000039364495,0.64728475,0.004011428,0.3465936,0.00058320415],"about_ca_topic_score_codex":0.000025691279,"about_ca_topic_score_gemma":0.00008969125,"teacher_disagreement_score":0.34126762,"about_ca_system_score_codex":0.000042614753,"about_ca_system_score_gemma":0.00024163722,"threshold_uncertainty_score":0.9996879},"labels":[],"label_agreement":null},{"id":"W1581341907","doi":"10.1002/0470028637.met251","title":"Siderophore‐Binding Periplasmatic Protein<scp>Fhu</scp><scp>D</scp>and Related Periplasmic Binding Proteins Involved in Bacterial Iron Uptake","year":2004,"lang":"en","type":"other","venue":"Handbook of Metalloproteins","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Calgary","funders":"","keywords":"Periplasmic space; Siderophore; Bacterial outer membrane; ATP-binding cassette transporter; Biochemistry; Transporter; Ferric; Bacteria; Chemistry; Inner membrane; Membrane transport protein; Binding protein; Transmembrane protein; Biology; Membrane protein; Microbiology; Membrane; Escherichia coli; Receptor","score_opus":0.009377102032127138,"score_gpt":0.20826035582033267,"score_spread":0.19888325378820554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1581341907","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9789374,0.0058358377,0.00008764725,0.000037145728,0.0006794277,0.004616761,0.00022234862,0.00014126525,0.009442154],"genre_scores_gemma":[0.57394207,0.010336999,0.031645004,0.00008237616,0.0015628076,0.002450538,0.002771089,0.0029615164,0.37424758],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99521226,0.00023270604,0.001341809,0.001577144,0.0004979102,0.0011381739],"domain_scores_gemma":[0.99724656,0.000041570747,0.0012373504,0.0011057315,0.000093664166,0.0002751336],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005357097,0.0011980729,0.0015100627,0.00087265583,0.00017074334,0.00013675231,0.0007973267,0.0029522388,0.00019086966],"category_scores_gemma":[0.0008136143,0.0011717931,0.0003841862,0.00040886804,0.0007152974,0.00001669492,0.00067417754,0.0008701724,0.00007910849],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004089092,0.00022111768,0.000058615413,0.00081893586,0.00037350843,0.00005208037,0.00025244712,0.000008182788,0.9965241,0.00008044189,0.0010256331,0.00054403534],"study_design_scores_gemma":[0.0035130286,0.0013242522,0.00009186746,0.002712689,0.00018206201,0.00006734379,0.0003353136,0.000013369781,0.8473923,0.00017331731,0.14378318,0.00041123453],"about_ca_topic_score_codex":0.00028996982,"about_ca_topic_score_gemma":0.0010912669,"teacher_disagreement_score":0.40499532,"about_ca_system_score_codex":0.00013193171,"about_ca_system_score_gemma":0.0005474297,"threshold_uncertainty_score":0.9990732},"labels":[],"label_agreement":null},{"id":"W1583100576","doi":"10.1109/lls.2015.2465839","title":"Displacement of Bacterial Plasmids by Engineered Unilateral Incompatibility","year":2015,"lang":"en","type":"article","venue":"IEEE Life Sciences Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation","keywords":"Plasmid; Replicon; Biology; Genetics; T-DNA Binary system; Gene; Recombinant DNA; Vector (molecular biology)","score_opus":0.016054842952095826,"score_gpt":0.24290643515383828,"score_spread":0.22685159220174245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1583100576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969562,0.000052290983,0.00045984917,0.0012125629,0.0010762524,0.000113317226,0.000051302955,0.000010826904,0.00006734887],"genre_scores_gemma":[0.9981875,0.000013997975,0.0009111078,0.0005842775,0.00021174262,0.000005268626,0.000053836433,0.0000066212706,0.00002565695],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896204,0.00005048705,0.00023809845,0.00032586174,0.00018145473,0.00024204417],"domain_scores_gemma":[0.99951196,0.000006226626,0.00008960045,0.00023539286,0.00003590173,0.00012092506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031813455,0.00012752,0.00014958263,0.000041689513,0.00004088252,0.000019221288,0.0003555573,0.00012038119,0.000012996125],"category_scores_gemma":[0.000044757264,0.00010785251,0.00004494478,0.000116509706,0.00045812762,0.000005374934,0.00009278642,0.000054710177,0.000003705335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000066034285,0.00003505679,0.0019430819,0.000005328803,0.000013854379,3.1076823e-7,0.000025987325,0.0002405857,0.98186606,0.000010132227,0.015681282,0.00011227205],"study_design_scores_gemma":[0.00060749246,0.00056197937,0.0007800473,0.000004937538,0.0000073035712,0.0000025050772,0.00003314784,0.00018202694,0.9752304,0.0000143147445,0.022401532,0.00017432088],"about_ca_topic_score_codex":0.000038561007,"about_ca_topic_score_gemma":0.000012070441,"teacher_disagreement_score":0.006720252,"about_ca_system_score_codex":0.000013189298,"about_ca_system_score_gemma":0.00009531593,"threshold_uncertainty_score":0.43980977},"labels":[],"label_agreement":null},{"id":"W1583328087","doi":"10.1016/s0076-6879(07)28005-x","title":"Bacterial Osmosensing Transporters","year":2007,"lang":"en","type":"review","venue":"Methods in enzymology on CD-ROM/Methods in enzymology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Osmolyte; Osmoprotectant; Osmoregulation; Osmotic shock; Biology; Transporter; Biochemistry; Osmotic pressure; Osmotic concentration; Chemistry; Gene; Amino acid; Ecology; Proline","score_opus":0.08079024054411436,"score_gpt":0.44296685923093093,"score_spread":0.36217661868681655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1583328087","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009030114,0.94620866,0.028002936,0.00015515907,0.011991568,0.0024573847,0.00016654235,0.0001539348,0.0018337156],"genre_scores_gemma":[0.00007555935,0.52257854,0.47487658,0.00043892468,0.00087283755,0.00017130707,0.0004779268,0.0002491831,0.00025912267],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9771288,0.012943293,0.0036286782,0.0034676697,0.0002734366,0.0025581028],"domain_scores_gemma":[0.99375147,0.0020459336,0.0012777507,0.002472944,0.00013416464,0.00031776493],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.01107241,0.0020334946,0.0057485024,0.0023974932,0.00015442545,0.000051203093,0.0019460561,0.009732346,0.00024007482],"category_scores_gemma":[0.0019690993,0.0019787424,0.0011819567,0.0014964569,0.0015662019,0.0000111037125,0.0007316028,0.003472301,0.000043559656],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004331888,0.00042207167,0.000037401027,0.000960176,0.0002941346,0.00053811463,0.00006743039,0.000010256034,0.1111722,0.00056228193,0.00021301606,0.8852897],"study_design_scores_gemma":[0.0017405861,0.0018192983,0.00061827776,0.00111133,0.00037067803,0.0014562913,0.000040847306,0.0000033939211,0.010931872,0.0013924974,0.978612,0.001902894],"about_ca_topic_score_codex":0.0001386909,"about_ca_topic_score_gemma":0.0010513341,"teacher_disagreement_score":0.97839904,"about_ca_system_score_codex":0.0003562356,"about_ca_system_score_gemma":0.0006267048,"threshold_uncertainty_score":0.99924076},"labels":[],"label_agreement":null},{"id":"W158721976","doi":"10.1023/a:1010318019988","title":"Enhanced production of penicillin G acylase from a recombinant Escherichia coli","year":2001,"lang":"en","type":"article","venue":"Biotechnology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Petroleum Technology Research Centre; Council of Scientific and Industrial Research, India","keywords":"Escherichia coli; Penicillin amidase; Recombinant DNA; Microbiology; Chemistry; Enzyme; Strain (injury); Molecular biology; Biology; Gene; Biochemistry","score_opus":0.007434575532149459,"score_gpt":0.21055487784103735,"score_spread":0.2031203023088879,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W158721976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98465234,0.0002991521,0.0022349895,0.011412921,0.0010163025,0.00025799908,0.000012856034,0.000073303774,0.00004010867],"genre_scores_gemma":[0.9942902,0.0012689945,0.0033830472,0.0005660348,0.00019298676,0.000027853033,0.0000944509,0.000027355523,0.00014911054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862224,0.000046224708,0.00032941086,0.00058709,0.000086814194,0.00032821562],"domain_scores_gemma":[0.9989797,0.000006457992,0.0002003655,0.0007210966,0.00005136508,0.00004103277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010917354,0.00021287489,0.00026276495,0.000120102784,0.00005987722,0.000008131095,0.00038695024,0.00079611246,0.000032636202],"category_scores_gemma":[0.000115935014,0.00020621823,0.00009474018,0.0002635648,0.00039969423,0.0000034396278,0.00019713033,0.00021415336,0.000019985166],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018642748,0.00007368354,0.00019077702,0.0000054264374,0.00006798089,0.000005592495,0.000012419605,0.0000059272097,0.99139816,0.000078895595,0.0012505166,0.006724209],"study_design_scores_gemma":[0.00048649174,0.0003371468,0.0011166485,0.000013564714,0.000024880526,0.000012577333,0.000034798242,0.000007861553,0.95981073,0.00009653487,0.037835553,0.00022321122],"about_ca_topic_score_codex":0.00009237149,"about_ca_topic_score_gemma":0.00007950007,"teacher_disagreement_score":0.036585037,"about_ca_system_score_codex":0.000019007262,"about_ca_system_score_gemma":0.000033480104,"threshold_uncertainty_score":0.84093356},"labels":[],"label_agreement":null},{"id":"W1587833696","doi":"10.1111/j.1365-2958.2007.05634.x","title":"Cryo‐electron microscopy of cell division in <i>Staphylococcus aureus</i> reveals a mid‐zone between nascent cross walls","year":2007,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Periplasmic space; Teichoic acid; Biology; Peptidoglycan; Cell division; Cell envelope; Ultrastructure; Electron microscope; Autolysis (biology); Cell wall; Cryo-electron tomography; Biophysics; Division (mathematics); Cryo-electron microscopy; Anatomy; Cell biology; Cell; Biochemistry; Escherichia coli; Optics","score_opus":0.004209839100134579,"score_gpt":0.2534051625122504,"score_spread":0.24919532341211584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1587833696","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99313176,0.0023062625,0.0034765657,0.000103123086,0.00023633335,0.0004524297,0.00013446633,0.000018571769,0.00014046965],"genre_scores_gemma":[0.9966997,0.000183618,0.0019507924,0.0003107221,0.00009890169,0.000009676505,0.00054801104,0.000051698647,0.00014691084],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972775,0.00015067575,0.00079286116,0.0007969912,0.0000771984,0.00090480177],"domain_scores_gemma":[0.9987314,0.000024834439,0.0003037584,0.00069833413,0.00013539697,0.00010627602],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00061500905,0.00037885117,0.00055751414,0.00021793129,0.000056055607,0.000018307148,0.00058515003,0.0010746534,0.000015165143],"category_scores_gemma":[0.000042413023,0.0003780338,0.00020444885,0.00028561996,0.00035422502,0.0000031671707,0.0004208133,0.0003172443,0.00001484159],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019091956,0.0002155438,0.013396625,0.000053601754,0.000041190324,0.000024137235,0.000026988875,0.000011551617,0.9853711,0.000016488442,0.00017464039,0.00047722718],"study_design_scores_gemma":[0.0013642859,0.0010291799,0.00777605,0.000026655925,0.000020845708,0.000011364819,0.000010085679,2.8206853e-7,0.970675,0.000050002862,0.018662354,0.00037390846],"about_ca_topic_score_codex":0.00006514874,"about_ca_topic_score_gemma":0.00008781301,"teacher_disagreement_score":0.018487714,"about_ca_system_score_codex":0.000049825976,"about_ca_system_score_gemma":0.000077214805,"threshold_uncertainty_score":0.99986714},"labels":[],"label_agreement":null},{"id":"W1589053113","doi":"10.1046/j.1365-2958.2002.03089.x","title":"The dynamic microbe: green fluorescent protein brings bacteria to light","year":2002,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":131,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary General Hospital; University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Green fluorescent protein; Aequorea victoria; Biology; Protein subcellular localization prediction; Cell biology; mCherry; Reporter gene; Heterologous; Fluorescent protein; Transduction (biophysics); Bimolecular fluorescence complementation; Gene; Computational biology; Gene expression; Genetics; Biochemistry","score_opus":0.00694357092608286,"score_gpt":0.23530900030110055,"score_spread":0.2283654293750177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1589053113","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004256872,0.9914067,0.000117282085,0.000931568,0.0007035334,0.0021885205,0.0002607254,0.000049752296,0.000085089574],"genre_scores_gemma":[0.00025630218,0.9933455,0.0009063729,0.00043083986,0.00027080084,0.00036207834,0.0011188095,0.0002084266,0.0031008706],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961646,0.00041004113,0.0008876378,0.0013819452,0.00007431826,0.0010814412],"domain_scores_gemma":[0.99764323,0.000013439631,0.0004035701,0.0016339322,0.0001205423,0.00018526004],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002600172,0.0009206368,0.0012510747,0.00018200393,0.00024032043,0.00010997331,0.0016819882,0.001904307,0.000042266558],"category_scores_gemma":[0.00006925118,0.0006695775,0.0007060745,0.00031501192,0.0002739775,0.0000016694929,0.0014062888,0.0005564945,0.00044666848],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018555851,0.00003743494,1.2480578e-7,0.00041082484,0.00022849745,0.000024420633,0.0000041692356,9.2815114e-8,0.7267283,0.00002198343,0.0015206372,0.27100497],"study_design_scores_gemma":[0.00019600263,0.00041296348,6.166298e-7,0.0005842873,0.000171693,0.00041711103,0.0000016632911,3.0317517e-7,0.097645655,0.000008716315,0.8998422,0.0007188103],"about_ca_topic_score_codex":0.000025148967,"about_ca_topic_score_gemma":0.000089639834,"teacher_disagreement_score":0.8983215,"about_ca_system_score_codex":0.000098445635,"about_ca_system_score_gemma":0.0001561707,"threshold_uncertainty_score":0.99957556},"labels":[],"label_agreement":null},{"id":"W1589334151","doi":"10.1111/1462-2920.12602","title":"<scp>EsrC</scp> , an envelope stress‐regulated repressor of the <scp> <i>mexCD</i> </scp> <i>‐</i> <scp> <i>oprJ</i> </scp> multidrug efflux operon in <scp> <i>P</i> </scp> <i>seudomonas aeruginosa</i>","year":2014,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research","keywords":"Repressor; Operon; Biology; Mutant; Efflux; Gene; Sigma factor; Regulation of gene expression; Genetics; Cell biology; Gene expression; Promoter","score_opus":0.004120375580973275,"score_gpt":0.18507069853175168,"score_spread":0.1809503229507784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1589334151","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895587,0.0029317134,0.00010021654,0.00013811275,0.0015572236,0.0017684139,0.0017204212,0.00014317778,0.002082016],"genre_scores_gemma":[0.9851281,0.0026854235,0.0011549314,0.002206282,0.0006961251,0.00018771521,0.0030229392,0.00031773615,0.0046007284],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99063265,0.001340265,0.0020134803,0.0030307376,0.00043782048,0.0025450173],"domain_scores_gemma":[0.9939872,0.0009098235,0.0013064184,0.0031633074,0.00009257378,0.0005407031],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0010912941,0.0017160926,0.0016928429,0.00031477286,0.0004799074,0.0001199993,0.003036189,0.0028701683,0.00002214695],"category_scores_gemma":[0.0011226027,0.0015197578,0.00070041796,0.0006073643,0.0024621072,0.00007055453,0.0023892417,0.0014160201,0.00019723421],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016530115,0.00114465,0.024249671,0.00008691798,0.000250631,0.000017697741,0.00084637676,0.00047511654,0.9572309,0.000040792238,0.014899158,0.00074154645],"study_design_scores_gemma":[0.0026722893,0.00083850126,0.013543841,0.00007563824,0.00011851026,0.00020185902,0.0009404942,0.000055603523,0.65105546,0.000059619582,0.33029386,0.00014435514],"about_ca_topic_score_codex":0.00017911462,"about_ca_topic_score_gemma":0.00031418054,"teacher_disagreement_score":0.3153947,"about_ca_system_score_codex":0.00018563672,"about_ca_system_score_gemma":0.00017092003,"threshold_uncertainty_score":0.9995585},"labels":[],"label_agreement":null},{"id":"W1594689193","doi":"10.4315/0362-028x-69.2.276","title":"Transformation of Escherichia coli K-12 with a High-Copy Plasmid Encoding the Green Fluorescent Protein Reduces Growth: Implications for Predictive Microbiology","year":2006,"lang":"en","type":"article","venue":"Journal of Food Protection","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Japan Association for Chemical Innovation; Ryerson University","keywords":"Green fluorescent protein; Tetracycline; Escherichia coli; Biology; Transformation (genetics); Plasmid; Microbiology; Salmonella; Enterobacteriaceae; Aequorea victoria; Strain (injury); Molecular biology; Bacteria; Gene; Genetics; Antibiotics","score_opus":0.00905628843129262,"score_gpt":0.205173284290875,"score_spread":0.1961169958595824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1594689193","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97060156,0.00010973742,0.025534729,0.0025606316,0.00009506856,0.0010030828,0.00006561515,0.0000054006614,0.00002415659],"genre_scores_gemma":[0.9974491,0.000034028802,0.0020610194,0.000017614817,0.00027272775,0.00011900769,0.000025997184,0.000010998696,0.000009531228],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927837,0.000055062188,0.0003638005,0.00012166726,0.000050255047,0.00013086153],"domain_scores_gemma":[0.9990649,0.000006840791,0.0004917688,0.00010240168,0.00031496224,0.000019122363],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020961658,0.00010495517,0.00014648642,0.00006758886,0.00010137572,0.000012158939,0.00014392838,0.00020123027,9.701225e-7],"category_scores_gemma":[0.000022784763,0.00006869927,0.00007335647,0.000100907826,0.00010291482,0.000008968335,0.000015358708,0.00012937521,1.0428561e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009956952,0.00007224357,0.000021076898,0.000031115123,0.000088135086,5.931638e-8,0.00003696413,0.0000804077,0.9969857,0.0003561403,0.000044905366,0.0012875679],"study_design_scores_gemma":[0.0008039607,0.0053563383,0.0011583228,0.000034484994,0.000048412538,0.000056368448,0.00004269615,0.000022240063,0.9899487,0.0008853126,0.0015642103,0.000078956546],"about_ca_topic_score_codex":0.000042812597,"about_ca_topic_score_gemma":0.00006764149,"teacher_disagreement_score":0.026847497,"about_ca_system_score_codex":0.000023364231,"about_ca_system_score_gemma":0.00008569321,"threshold_uncertainty_score":0.2801475},"labels":[],"label_agreement":null},{"id":"W1597786221","doi":"10.1111/j.1365-2958.2010.07449.x","title":"Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in <i>Escherichia coli</i>","year":2010,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"rpoN; rpoS; Biology; Sigma factor; Genetics; Regulon; Gene; Gene expression; Promoter","score_opus":0.002788782539025769,"score_gpt":0.19431349945339052,"score_spread":0.19152471691436476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1597786221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982565,0.0008389624,0.000304209,0.00015703336,0.000116887226,0.00020104168,0.0000773774,0.0000068841655,0.00004108376],"genre_scores_gemma":[0.9984691,0.00013312865,0.0010170434,0.00013488371,0.00001587953,0.000008346088,0.00017957941,0.000013985665,0.000028068403],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911255,0.00005991713,0.00023210673,0.00037820594,0.000022854849,0.00019437977],"domain_scores_gemma":[0.9996027,0.0000064543715,0.0000771187,0.00023774675,0.00003225508,0.00004376576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013460571,0.00014796057,0.00020352544,0.000048210048,0.000028531975,0.00000777369,0.000105572275,0.000509537,0.000012134965],"category_scores_gemma":[0.000028922885,0.00014310074,0.000030256728,0.00006313999,0.00033274345,0.0000016748204,0.00009241131,0.0001586759,5.232071e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008222448,0.000051647996,0.0016531781,0.000025946105,0.0000098751,0.000001297254,0.000017605693,6.0353625e-7,0.9975592,0.000041920095,0.00006874418,0.00048779193],"study_design_scores_gemma":[0.00061834435,0.00023608608,0.006023706,0.000007966912,0.00000975018,0.000028280656,0.0000067858473,0.000013150807,0.98499125,0.00010627411,0.007832084,0.00012630004],"about_ca_topic_score_codex":0.000023976669,"about_ca_topic_score_gemma":0.00003994639,"teacher_disagreement_score":0.0125678945,"about_ca_system_score_codex":0.00000320239,"about_ca_system_score_gemma":0.00001940469,"threshold_uncertainty_score":0.5835479},"labels":[],"label_agreement":null},{"id":"W1603527036","doi":"10.3390/biom5021012","title":"A Perspective on the Enhancer Dependent Bacterial RNA Polymerase","year":2015,"lang":"en","type":"review","venue":"Biomolecules","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Impact","funders":"Biotechnology and Biological Sciences Research Council","keywords":"RNA polymerase; Sigma factor; Biology; Polymerase; Perspective (graphical); Genetics; Computational biology; Gene; RNA; Computer science","score_opus":0.030607014120510916,"score_gpt":0.3200072886030786,"score_spread":0.28940027448256767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1603527036","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009397001,0.9942171,0.000023754668,0.0003030028,0.0008513099,0.00066330435,0.00031152964,0.000025699152,0.0026645728],"genre_scores_gemma":[0.00080885325,0.9960283,0.000059181923,0.00014739082,0.0013520595,0.00014837316,0.00032467043,0.00008171466,0.001049447],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981087,0.00018507754,0.00035679605,0.00075394666,0.00020632005,0.00038914508],"domain_scores_gemma":[0.99859744,0.00001885295,0.00026138278,0.0008821223,0.00012726618,0.00011290639],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021211104,0.0005338881,0.0006821839,0.0000982018,0.00009721612,0.00007757,0.00070479745,0.0008896814,0.000089205525],"category_scores_gemma":[0.000105267514,0.00033011576,0.00039493287,0.00015894974,0.00029735922,0.0000011454713,0.00037659364,0.00026210074,0.00016053475],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000178436,0.00023029029,6.3876044e-8,0.000390829,0.00070860673,0.000037897582,0.000033880362,8.3763105e-8,0.21320465,0.0044049174,0.014741806,0.7660685],"study_design_scores_gemma":[0.00019649134,0.0004516733,1.08759075e-7,0.00034380288,0.00018396019,0.00003922305,0.000040213443,1.1985168e-7,0.075651586,0.000077938865,0.9226116,0.00040326966],"about_ca_topic_score_codex":0.000054723434,"about_ca_topic_score_gemma":0.000042741594,"teacher_disagreement_score":0.9078698,"about_ca_system_score_codex":0.00010945074,"about_ca_system_score_gemma":0.0004640784,"threshold_uncertainty_score":0.99991506},"labels":[],"label_agreement":null},{"id":"W1611897683","doi":"10.1073/pnas.1402139111","title":"Capturing the bacterial holo-complex","year":2014,"lang":"en","type":"letter","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Computational biology; Biology; Chemistry; Computer science","score_opus":0.040068361472847765,"score_gpt":0.27633719619414554,"score_spread":0.23626883472129778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1611897683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.53198904,0.000101097525,5.171523e-7,0.4650052,0.00012891836,0.00023293169,0.00005478563,0.000006753191,0.0024807786],"genre_scores_gemma":[0.9130015,0.000083790845,0.0004105129,0.08286177,0.0032576814,0.00001186699,0.00000598499,0.000012131308,0.0003547914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985451,0.000013108908,0.000312128,0.00034947146,0.00056911336,0.00021105038],"domain_scores_gemma":[0.99918646,0.000025940975,0.00056508096,0.000023064902,0.00018607233,0.000013363052],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006754451,0.00016229766,0.00019231238,0.00007223667,0.0001687724,0.000036199428,0.0017374664,0.0007158798,0.000015612964],"category_scores_gemma":[0.00017406307,0.000089483234,0.00013810839,0.00018660483,0.0013843578,0.000005034114,0.00033069754,0.0004490323,0.0000014294864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000732069,0.000004809633,0.000040458777,0.00003239754,0.0000202415,4.4343182e-9,0.000008401758,0.0000017365602,0.7918268,0.00034136046,0.20763154,0.00008494804],"study_design_scores_gemma":[0.000086051616,0.0000663968,0.0014729929,0.00002631918,0.000015818652,0.000017514052,0.0000070612873,0.00001236457,0.53523403,0.0028080724,0.46014848,0.000104876875],"about_ca_topic_score_codex":0.000004580352,"about_ca_topic_score_gemma":8.456892e-8,"teacher_disagreement_score":0.3821434,"about_ca_system_score_codex":0.00000952954,"about_ca_system_score_gemma":0.00003410704,"threshold_uncertainty_score":0.55215204},"labels":[],"label_agreement":null},{"id":"W1659400417","doi":"10.1186/1471-2180-6-14","title":"Stationary phase expression of the arginine biosynthetic operon argCBH in Escherichia coli","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Operon; Escherichia coli; Stationary phase; Parasitology; Microbiology; Escherichia coli Proteins; Genetics; Computational biology; Gene; Zoology","score_opus":0.0069828178572488245,"score_gpt":0.2277551049747544,"score_spread":0.22077228711750557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1659400417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983391,0.00054716313,0.00022929472,0.0001645152,0.00023214362,0.00023276736,0.00010555699,0.000006856983,0.00014261415],"genre_scores_gemma":[0.9975542,0.00005098246,0.001711305,0.000088385226,0.00008537014,0.000014700611,0.00023557653,0.0000139201065,0.00024558656],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903566,0.00012586972,0.00030202695,0.00029151348,0.000025597563,0.00021931485],"domain_scores_gemma":[0.9994535,0.000013406004,0.00013481804,0.00034266218,0.000039310184,0.00001634642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110475026,0.00013681958,0.000172594,0.00004941755,0.000036113433,0.0000042398415,0.00027480462,0.00032579136,0.000040109313],"category_scores_gemma":[0.00003146248,0.000098710894,0.000067804845,0.000118880766,0.00023781529,0.0000014096527,0.0001937518,0.00009220637,0.0000049690675],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013978138,0.00020826065,0.0020121774,0.000011724457,0.0000044004555,5.5255146e-7,0.000007005335,0.000051839266,0.9966045,0.000105194995,0.00070215896,0.00015242121],"study_design_scores_gemma":[0.0011167272,0.0002494684,0.0043209484,0.000015517811,0.000006111877,0.000012379303,0.00001897267,0.000012829804,0.96806,0.00007619113,0.025992563,0.000118283904],"about_ca_topic_score_codex":0.000045287383,"about_ca_topic_score_gemma":0.00023090304,"teacher_disagreement_score":0.028544478,"about_ca_system_score_codex":0.0000101551395,"about_ca_system_score_gemma":0.000081335886,"threshold_uncertainty_score":0.40253136},"labels":[],"label_agreement":null},{"id":"W1663057342","doi":"10.1093/nar/gkv955","title":"The activity of CouR, a MarR family transcriptional regulator, is modulated through a novel molecular mechanism","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of British Columbia","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Biological and Environmental Research; National Institutes of Health; Genome Canada; U.S. Department of Energy","keywords":"Biology; Repressor; DNA; Ligand (biochemistry); Biochemistry; Stereochemistry; Catabolite repression; Binding site; Steric effects; Gene; Gene expression; Receptor; Chemistry; Mutant","score_opus":0.05870844314209637,"score_gpt":0.3204867796199371,"score_spread":0.2617783364778407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1663057342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99244714,0.00067633094,0.0034784593,0.0018982666,0.00016941718,0.00032099115,0.000075727265,0.00001538343,0.0009183008],"genre_scores_gemma":[0.9971385,0.0003441195,0.0016948335,0.00013498418,0.00009663314,0.000026926138,0.000022946278,0.00003440769,0.0005066626],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980334,0.00015653204,0.00023114226,0.00043867418,0.00063922553,0.00050103164],"domain_scores_gemma":[0.9984816,0.000017208326,0.000068369496,0.0007176226,0.0005954615,0.00011974957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009084959,0.00016783082,0.00018797527,0.000059868962,0.00017315974,0.00004487607,0.0006102258,0.0004901039,0.000016642396],"category_scores_gemma":[0.00011754988,0.00013035844,0.000115570474,0.00029959058,0.0005423026,0.0000061452834,0.000306332,0.00032179744,0.00001281138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035906368,0.00012426084,0.000019877532,0.0000094752895,0.00008503982,0.0000025020584,0.000071625356,0.000006102686,0.989604,0.0063958326,0.0014739939,0.0018482313],"study_design_scores_gemma":[0.0009163418,0.0007154412,0.00092750206,0.000009885271,0.000009868246,0.000013794535,0.00013321127,0.00045681844,0.9252269,0.0056561516,0.06578343,0.00015060078],"about_ca_topic_score_codex":0.000110816174,"about_ca_topic_score_gemma":0.000012790981,"teacher_disagreement_score":0.06437705,"about_ca_system_score_codex":0.000038268157,"about_ca_system_score_gemma":0.0002930908,"threshold_uncertainty_score":0.5315863},"labels":[],"label_agreement":null},{"id":"W1708540518","doi":"10.1111/mmi.12055","title":"Multidisciplinary perspectives on bacterial genome organization and dynamics","year":2012,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; Universiteit Leiden","keywords":"Biology; Genome; Chromatin; Computational biology; Bacterial genome size; Genomic organization; Multidisciplinary approach; Data science; DNA; Genetics; Computer science; Gene","score_opus":0.003112397324598644,"score_gpt":0.19964867092012584,"score_spread":0.1965362735955272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1708540518","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99704975,0.000741715,0.0009269232,0.00016254759,0.00021406956,0.00015316973,0.000043968714,0.000025292456,0.00068257784],"genre_scores_gemma":[0.9974536,0.00017757594,0.0011334177,0.00008976941,0.0002092049,0.000005023152,0.0005710828,0.000051914983,0.00030842432],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991749,0.000064365115,0.00011947957,0.000327144,0.000021191096,0.0002929079],"domain_scores_gemma":[0.9995757,0.000003533932,0.0000561354,0.0002523854,0.000046192017,0.00006607103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006779969,0.00016763726,0.00013297335,0.000063769454,0.0000613313,0.0000121115645,0.0001181417,0.00040201662,0.000084438594],"category_scores_gemma":[0.000042993775,0.000158931,0.000032158237,0.000079059464,0.000166056,0.0000019850984,0.00023288,0.00008507678,0.000037216778],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039272807,0.00008361548,0.0012316668,0.000003563298,0.0000392176,0.0000020332698,0.00006943453,0.0000017175319,0.996489,0.0017278418,0.000043269403,0.00026938657],"study_design_scores_gemma":[0.0006186348,0.0005706621,0.006613394,0.0000035493074,0.000023887136,0.00023604288,0.00021032745,0.0000044515023,0.9646724,0.000018460405,0.026674906,0.00035330764],"about_ca_topic_score_codex":0.0000021856642,"about_ca_topic_score_gemma":0.000003641279,"teacher_disagreement_score":0.0318166,"about_ca_system_score_codex":0.000020342144,"about_ca_system_score_gemma":0.00001283859,"threshold_uncertainty_score":0.6481018},"labels":[],"label_agreement":null},{"id":"W1743939834","doi":"10.1046/j.1432-1033.2002.03321.x","title":"Structural analysis of <i>Francisella tularensis</i> lipopolysaccharide","year":2002,"lang":"en","type":"article","venue":"European Journal of Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":184,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Lipid A; Chemistry; Glucosamine; Residue (chemistry); Disaccharide; Oligosaccharide; Substituent; Stereochemistry; Population; Hydrolysis; Lipopolysaccharide; Biochemistry; Biology","score_opus":0.009441087308964416,"score_gpt":0.20254328536021202,"score_spread":0.1931021980512476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1743939834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99648833,0.0020179232,0.000200342,0.00012430841,0.00019023691,0.000025440007,0.000033667082,0.0000048175602,0.000914943],"genre_scores_gemma":[0.99791276,0.00040410968,0.0010044635,0.00009580957,0.00035410293,1.5661719e-7,0.000021099771,0.00002135666,0.0001861319],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987749,0.00007946438,0.0005777891,0.00020951316,0.0001695458,0.00018880377],"domain_scores_gemma":[0.9987287,0.0000069716602,0.00053898327,0.0003956806,0.00022350876,0.00010613522],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026220595,0.00016574567,0.00032681672,0.00012940529,0.000034536908,0.000017277214,0.00043780264,0.000108575914,0.00014555523],"category_scores_gemma":[0.00009125135,0.00014535412,0.0003712556,0.00024913193,0.00015305898,0.0000025865975,0.00011502403,0.00015835412,0.0000039260526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004811878,0.000032348606,0.000709242,0.0000125464585,0.0006637469,0.000029140825,0.000021347867,0.000056044482,0.9928119,0.0000031205493,0.0010621963,0.004550202],"study_design_scores_gemma":[0.00040875867,0.00025188085,0.0012123873,0.000013620004,0.000390943,0.00010228672,0.000030284706,0.00008281174,0.99370325,0.0000030168617,0.0036456161,0.00015513999],"about_ca_topic_score_codex":0.0000013492519,"about_ca_topic_score_gemma":8.7176943e-7,"teacher_disagreement_score":0.004395062,"about_ca_system_score_codex":0.000007986437,"about_ca_system_score_gemma":0.000018894138,"threshold_uncertainty_score":0.5927369},"labels":[],"label_agreement":null},{"id":"W1754786733","doi":"10.1186/1471-2164-4-17","title":"Wavelet to predict bacterial ori and ter: a tendency towards a physical balance","year":2003,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Medical Research Council; Canadian Institutes of Health Research; Peking University; Natural Sciences and Engineering Research Council of Canada; Medical Research Council Canada; Government of Jiangxi Province","keywords":"Biology; Genetics; Wavelet; Balance (ability); Chromosome; Skew; Gene; Computer science; Artificial intelligence","score_opus":0.008468456879741,"score_gpt":0.22044542293943276,"score_spread":0.21197696605969177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1754786733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976881,0.00011275256,0.0008972725,0.00011798321,0.0003618871,0.00022701727,0.000070420225,0.000015926153,0.00050861074],"genre_scores_gemma":[0.9893776,0.00013685145,0.009397381,0.00016314362,0.00057357934,0.00002205778,0.000044746812,0.000025193236,0.0002594002],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990359,0.000038892165,0.00015421852,0.00041914394,0.00006225411,0.00028959126],"domain_scores_gemma":[0.9994548,0.000004161564,0.000044604614,0.00033945293,0.00003732867,0.000119637036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009309625,0.00017467137,0.00017753671,0.000031423926,0.000051116527,0.000037732516,0.00016678542,0.0002182182,0.000013654158],"category_scores_gemma":[0.000074966534,0.00016269094,0.00005541338,0.00006161009,0.00006854995,0.0000017541448,0.0001615053,0.00007451161,0.000013970639],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008725586,0.000049095906,0.0007935553,0.0000111254685,0.000018599176,0.0000013436882,0.0000441496,0.0000029217063,0.9951854,0.0002394796,0.0004698867,0.0030972045],"study_design_scores_gemma":[0.0007158561,0.0006872745,0.004369241,0.000005038351,0.00002005884,0.000046559107,0.00003402435,0.00005024299,0.73658776,0.00027878795,0.25690174,0.00030337527],"about_ca_topic_score_codex":0.000008210251,"about_ca_topic_score_gemma":0.00003262919,"teacher_disagreement_score":0.25859758,"about_ca_system_score_codex":0.000016299824,"about_ca_system_score_gemma":0.00013427672,"threshold_uncertainty_score":0.6634344},"labels":[],"label_agreement":null},{"id":"W1757038894","doi":"10.1074/jbc.m115.676106","title":"Crystal Structure of the Minor Pilin CofB, the Initiator of CFA/III Pilus Assembly in Enterotoxigenic Escherichia coli","year":2015,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research","keywords":"Pilus; Pilin; Fimbriae Proteins; Biology; Escherichia coli; Microbiology; Protein filament; Protein subunit; Bacterial outer membrane; Vibrio cholerae; Bacteria; Biochemistry; Genetics; Gene","score_opus":0.01744681346543271,"score_gpt":0.24039254205198976,"score_spread":0.22294572858655703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1757038894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844676,0.00082663243,0.000015759362,0.00023015628,0.00018613017,0.000122054174,0.000045443972,0.0000017753703,0.00012525624],"genre_scores_gemma":[0.9993033,0.00012095591,0.00019156063,0.00010515968,0.00022147202,0.0000018372466,0.000008109002,0.00000759812,0.000040008083],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99876976,0.000099899364,0.0006097072,0.00016271388,0.00016478218,0.00019311417],"domain_scores_gemma":[0.99875736,0.000024697856,0.00063169387,0.00029969873,0.00021263957,0.00007390609],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029114084,0.00015894548,0.0003262103,0.000016802333,0.000023889435,0.000008787284,0.00066912436,0.00051199953,0.000026975289],"category_scores_gemma":[0.00031850534,0.000080898986,0.00018951132,0.00013969709,0.00036524917,0.0000026155228,0.00027003267,0.0003446593,1.9598745e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037728855,0.00010524901,0.005253804,0.000019327379,0.000051735882,0.0000028947934,0.000024802082,0.000012802238,0.993873,0.000006849406,0.00017225376,0.000100021614],"study_design_scores_gemma":[0.0009478268,0.0005300817,0.0077344836,0.00002643719,0.000019068219,0.00006821987,0.00018719846,0.0000047627295,0.98803,0.00013975632,0.002217243,0.00009491999],"about_ca_topic_score_codex":0.0000080827185,"about_ca_topic_score_gemma":0.000011418806,"teacher_disagreement_score":0.0058429693,"about_ca_system_score_codex":0.000021193748,"about_ca_system_score_gemma":0.00018184846,"threshold_uncertainty_score":0.39490092},"labels":[],"label_agreement":null},{"id":"W1767308489","doi":"10.1038/emboj.2011.5","title":"Linkage between the bacterial acid stress and stringent responses: the structure of the inducible lysine decarboxylase","year":2011,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":176,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research; University of Toronto","funders":"Canadian Institutes of Health Research; National Institutes of Health; Université de Sherbrooke; Natural Sciences and Engineering Research Council of Canada; University of Oklahoma","keywords":"Lysine decarboxylase; Biology; Lysine; Biochemistry; Stringent response; Escherichia coli; Effector; Enzyme; Antiporter; Amino acid; Cadaverine; Membrane; Gene","score_opus":0.017514017170826058,"score_gpt":0.22999888895236867,"score_spread":0.2124848717815426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1767308489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99707854,0.0006877922,0.000024823705,0.0014106402,0.00046656915,0.00017703681,0.00009791587,0.000003109675,0.000053546668],"genre_scores_gemma":[0.99839526,0.0004035252,0.000077123266,0.00012197281,0.00092702784,0.0000014300898,0.0000058691,0.0000143845855,0.000053375545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887747,0.00031985028,0.00027285164,0.00016323276,0.0001435561,0.00022302436],"domain_scores_gemma":[0.99893546,0.000030468475,0.00026326947,0.0006459459,0.00007749871,0.000047336263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045499878,0.00015300963,0.00014530496,0.000022779852,0.00036939792,0.00005763372,0.0008836712,0.0001883787,0.000050522398],"category_scores_gemma":[0.00010279417,0.00005790265,0.00009544502,0.00010434301,0.00044184024,0.0000032883984,0.00046814137,0.00043652733,5.5953774e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020020298,0.000016300353,0.003149565,0.0000046003806,0.00013874505,0.0000012916104,0.00030341907,0.0000019625163,0.9935849,0.000055752047,0.00012852575,0.0024147497],"study_design_scores_gemma":[0.00035283764,0.00022430028,0.054209292,0.000018138106,0.00009804253,0.0001062496,0.00020904519,0.0000015659764,0.94054395,0.00058993103,0.0035606974,0.00008595485],"about_ca_topic_score_codex":0.000021330454,"about_ca_topic_score_gemma":0.000053015134,"teacher_disagreement_score":0.05304094,"about_ca_system_score_codex":0.0000068865093,"about_ca_system_score_gemma":0.00010024505,"threshold_uncertainty_score":0.28411475},"labels":[],"label_agreement":null},{"id":"W1767575128","doi":"","title":"Two faces of the prokaryote concept.","year":2006,"lang":"en","type":"article","venue":"PubMed","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Prokaryote; Polyphyly; Biology; Eukaryote; Philosophy of biology; Context (archaeology); Monophyly; Phylogenetics; Evolutionary biology; Epistemology; Philosophy; Bacteria; Philosophy of science; Genetics; Paleontology; Genome; Gene","score_opus":0.006106896273099343,"score_gpt":0.18968478933872454,"score_spread":0.1835778930656252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1767575128","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99603367,0.00048174497,0.000025817284,0.00049572333,0.00023833888,0.0003103574,0.00001937116,0.000007231792,0.0023877292],"genre_scores_gemma":[0.998289,0.000018292949,0.00009964263,0.000077242104,0.0001884931,0.00009641507,0.000014084809,0.000007026811,0.001209825],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999494,0.000021688342,0.00012031904,0.0001421077,0.00005527993,0.00016658659],"domain_scores_gemma":[0.99963653,0.0000020649907,0.00006886128,0.00024654844,0.000030128607,0.000015863861],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000060235343,0.00006736901,0.00007259237,0.00001133316,0.000028013945,0.0000070378373,0.00020590186,0.000102094375,0.0000040031896],"category_scores_gemma":[0.00001773713,0.000045085646,0.000053179523,0.000062671796,0.00015480399,6.324611e-7,0.000120843324,0.000040452764,7.5600826e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021869115,0.000045038032,0.006404269,0.000005551841,0.000021450049,2.9023317e-7,0.0000038093228,0.000024044519,0.9597886,0.0008448803,0.0016725379,0.031167625],"study_design_scores_gemma":[0.00023272102,0.000019452807,0.12797229,8.993716e-7,0.000006501625,0.0000028703482,0.0000043249465,0.0000013565042,0.83183885,0.00030389972,0.03955802,0.000058825553],"about_ca_topic_score_codex":0.000047689693,"about_ca_topic_score_gemma":0.000059587263,"teacher_disagreement_score":0.1279498,"about_ca_system_score_codex":0.0000030836084,"about_ca_system_score_gemma":0.000014259698,"threshold_uncertainty_score":0.18385392},"labels":[],"label_agreement":null},{"id":"W1770626003","doi":"10.1016/j.devcel.2015.09.011","title":"Spore No More: Quality Control during Bacterial Development","year":2015,"lang":"en","type":"letter","venue":"Developmental Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Bacillus subtilis; Spore; Endospore; Microbiology; Cell biology; Bacterial spore; Bacillus (shape); Bacteria; Genetics","score_opus":0.011709338329961391,"score_gpt":0.22299852627312866,"score_spread":0.21128918794316726,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1770626003","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9767401,0.0002906349,0.000026184656,0.015373312,0.0028755448,0.0007388814,0.00035997733,0.000084959865,0.0035103888],"genre_scores_gemma":[0.38868397,0.0005254403,0.030865425,0.41079047,0.028977199,0.00059752987,0.053487726,0.00089937326,0.08517286],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99691343,0.00010316447,0.00077204715,0.0010022718,0.00042709796,0.0007819828],"domain_scores_gemma":[0.9987616,0.000009288929,0.00035102852,0.0004961038,0.00023337192,0.00014858323],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00029523595,0.00067692815,0.00058750156,0.000110006426,0.00015149852,0.000077607,0.00066342944,0.002227225,0.0002392041],"category_scores_gemma":[0.00004803419,0.00066687126,0.0001479422,0.00009040723,0.00016641618,0.000004019084,0.0005231128,0.00076528784,0.00045283884],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021009971,0.000048610964,0.00022390106,0.00014449896,0.00011958646,0.00008490004,0.00004415396,3.0472825e-7,0.5943097,2.7282323e-7,0.4044387,0.00037530324],"study_design_scores_gemma":[0.0013374914,0.0000717019,0.0011529771,0.000019666399,0.000017027172,0.000037366553,0.000017012451,2.1859624e-7,0.3017774,0.000002406869,0.6948752,0.00069154386],"about_ca_topic_score_codex":0.00001949944,"about_ca_topic_score_gemma":0.000017622084,"teacher_disagreement_score":0.58805615,"about_ca_system_score_codex":0.0002055392,"about_ca_system_score_gemma":0.00092515897,"threshold_uncertainty_score":0.99957824},"labels":[],"label_agreement":null},{"id":"W1780745691","doi":"10.1186/s12864-015-1661-7","title":"Refined analysis of the Campylobacter jejuni iron-dependent/independent Fur- and PerR-transcriptomes","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences","keywords":"Biology; Campylobacter jejuni; Transcriptome; Gene; Mutant; Genetics; Gene expression profiling; DNA microarray; Biogenesis; Microarray analysis techniques; Gene expression; Promoter; Bacteria","score_opus":0.016432222758540796,"score_gpt":0.22572961338149491,"score_spread":0.2092973906229541,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1780745691","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980978,0.0006110614,0.00013788021,0.00019017696,0.00026138115,0.00013764417,0.000090240435,0.0000070281963,0.00046683176],"genre_scores_gemma":[0.9978021,0.0002344867,0.00086828315,0.00012814299,0.00008540405,0.0000052627406,0.00006359523,0.000016633358,0.0007961081],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904764,0.000058666472,0.00024682385,0.00032272833,0.00012101691,0.00020311424],"domain_scores_gemma":[0.9991452,0.0000047396143,0.00012130869,0.00055918505,0.00008481993,0.00008471642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017285394,0.00015445527,0.00023004583,0.000083314124,0.000045467572,0.000022109863,0.0003254817,0.00028356214,0.0000143764],"category_scores_gemma":[0.00003102071,0.000116108735,0.00014416147,0.00017659522,0.000142566,0.0000020423754,0.00026280686,0.00008715197,0.0000022283048],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009879718,0.00005142937,0.024758615,0.000010969862,0.0002544106,3.7370566e-7,0.00010217194,0.00016729467,0.9736993,0.00011938385,0.00014399579,0.0005932669],"study_design_scores_gemma":[0.001821219,0.0005039898,0.1390648,0.0000068097856,0.0012167536,0.000028103486,0.0007410103,0.0002724048,0.7625465,0.00017415437,0.09308125,0.00054301514],"about_ca_topic_score_codex":0.00007751322,"about_ca_topic_score_gemma":0.0016067342,"teacher_disagreement_score":0.2111528,"about_ca_system_score_codex":0.000023627505,"about_ca_system_score_gemma":0.00012306368,"threshold_uncertainty_score":0.47347766},"labels":[],"label_agreement":null},{"id":"W1786268878","doi":"10.1111/j.1574-6976.2008.00101.x","title":"The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis","year":2008,"lang":"en","type":"review","venue":"FEMS Microbiology Reviews","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":492,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada","keywords":"Regulon; Biology; Virulence; Response regulator; Histidine kinase; Two-component regulatory system; Regulation of gene expression; Cell biology; Virulence factor; Microbiology; Phosphorylation; Gene; Genetics; Bacterial protein; Mutant","score_opus":0.01870253852015505,"score_gpt":0.2562475417620989,"score_spread":0.23754500324194386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1786268878","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009931225,0.98703724,0.0000073706187,0.000051824372,0.0012987943,0.0014480053,0.00018212249,0.0000283824,0.000015007027],"genre_scores_gemma":[0.00004616185,0.9971227,0.0005040018,0.00012380292,0.0009920174,0.00017838509,0.000721158,0.00009863848,0.00021310986],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9959206,0.00076320267,0.0012048875,0.0012579366,0.00004069075,0.0008127041],"domain_scores_gemma":[0.99759406,0.00009906184,0.0010763673,0.0010228017,0.000067198154,0.00014050488],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0008899054,0.0008695395,0.002161941,0.00005810647,0.000698075,0.00008862087,0.0005759146,0.0016781127,0.000016229771],"category_scores_gemma":[0.00017951931,0.0005732964,0.00046474164,0.00021639385,0.0008203074,0.000004807765,0.00085856876,0.00042118205,0.000027174105],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005027523,0.00001333855,0.000004527977,0.0008339098,0.00020339993,0.0000055430673,0.000010529248,5.6669975e-8,0.028203953,0.000018865772,0.004707202,0.9659484],"study_design_scores_gemma":[0.00027130774,0.0002519673,0.000013427602,0.0015079848,0.00030656133,0.0013516571,0.000005100668,1.9441005e-7,0.0012787388,0.000010006414,0.99435693,0.0006460993],"about_ca_topic_score_codex":0.000009234618,"about_ca_topic_score_gemma":0.000041679425,"teacher_disagreement_score":0.9896498,"about_ca_system_score_codex":0.000028904093,"about_ca_system_score_gemma":0.00015313593,"threshold_uncertainty_score":0.9996719},"labels":[],"label_agreement":null},{"id":"W1819176213","doi":"10.1046/j.1365-2958.2003.03576.x","title":"A lytic transglycosylase homologue, PleA, is required for the assembly of pili and the flagellum at the <i>Caulobacter crescentus</i> cell pole","year":2003,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; National Institute of General Medical Sciences; Partenariat Canadien Contre Le Cancer","keywords":"Caulobacter crescentus; Biology; Pilus; Flagellum; Peptidoglycan; Cell biology; Pilin; Biogenesis; Plea; Cell envelope; Cell wall; Genetics; Cell; Gene; Cell cycle; Escherichia coli","score_opus":0.005128722640224896,"score_gpt":0.19998041007370615,"score_spread":0.19485168743348125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1819176213","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9792687,0.010502575,0.0045041763,0.003912924,0.0002952385,0.0010948968,0.00024946398,0.00000958207,0.00016238989],"genre_scores_gemma":[0.99408066,0.0009853125,0.00043513646,0.0031547504,0.00004470861,0.00007587339,0.00010744721,0.000036054556,0.0010800449],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982983,0.00033055388,0.00036106486,0.0004956989,0.000046881716,0.00046752347],"domain_scores_gemma":[0.99875903,0.00010158477,0.00018123226,0.00081970985,0.000094097704,0.00004436837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050802197,0.00027695388,0.0003107096,0.00003005128,0.00025802755,0.00002433263,0.0005024856,0.0004513938,0.000032410197],"category_scores_gemma":[0.000092575574,0.00014613576,0.000264715,0.00010535123,0.0013409115,0.0000018867629,0.00021850728,0.0001606944,0.000007385083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003756781,0.000060337956,0.000025212454,0.000022773102,0.00013362865,0.0000029926452,0.000074248484,0.000005601915,0.9962618,0.0002481775,0.002619821,0.00016972661],"study_design_scores_gemma":[0.002258379,0.00030509743,0.000029492412,0.0000042817337,0.00012344457,0.0001139677,0.00006386751,0.0000155816,0.8036809,0.00007890387,0.19317056,0.00015551886],"about_ca_topic_score_codex":0.000025624755,"about_ca_topic_score_gemma":0.00009473938,"teacher_disagreement_score":0.1925809,"about_ca_system_score_codex":0.0000128768725,"about_ca_system_score_gemma":0.0000705012,"threshold_uncertainty_score":0.5959244},"labels":[],"label_agreement":null},{"id":"W1833156023","doi":"10.1111/mmi.12034","title":"Prime time for minor subunits of the type <scp>II</scp> secretion and type <scp>IV</scp> pilus systems","year":2012,"lang":"en","type":"letter","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Pilus; Biology; Secretion; Protein subunit; Cell biology; Bacterial conjugation; Escherichia coli; DNA; Biochemistry; Plasmid","score_opus":0.006993618617182868,"score_gpt":0.19693876209785172,"score_spread":0.18994514348066885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1833156023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.977303,0.013851395,0.00019986095,0.003691451,0.0025076517,0.0014555743,0.0007023956,0.000034897977,0.00025373767],"genre_scores_gemma":[0.8365066,0.002019436,0.0018650738,0.08559378,0.008066951,0.00031630642,0.02477352,0.0008316205,0.04002673],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99735695,0.0003311353,0.0005455725,0.00083427876,0.00009081989,0.0008412365],"domain_scores_gemma":[0.997825,0.00009010596,0.0005737309,0.0009991166,0.00043508268,0.00007691817],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002837354,0.00059576693,0.0007204117,0.0001417699,0.00015228114,0.000033229233,0.00073617056,0.0036624053,0.0000045915276],"category_scores_gemma":[0.00039513092,0.00048476143,0.0002429819,0.0002162594,0.0005091327,0.0000035124247,0.0007505365,0.0006588447,0.000028335497],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014092658,0.000035562574,0.000058827496,0.00015745802,0.0002679081,0.0000054132706,0.000029759824,0.0000024624499,0.8386932,0.000027563516,0.16061378,0.000094005074],"study_design_scores_gemma":[0.00031818534,0.00065558654,0.0000428267,0.000032392443,0.00015208004,0.00016727265,0.000007703425,0.000006602437,0.43897086,0.000018980418,0.5595339,0.000093627656],"about_ca_topic_score_codex":0.00002610639,"about_ca_topic_score_gemma":0.0000040005375,"teacher_disagreement_score":0.3997223,"about_ca_system_score_codex":0.000032662392,"about_ca_system_score_gemma":0.00017313403,"threshold_uncertainty_score":0.9997604},"labels":[],"label_agreement":null},{"id":"W1835124919","doi":"10.1111/j.1574-6968.2010.02076.x","title":"Identification of putative two-component regulatory systems in the bovine pathogen Mannheimia haemolytica A1, and preliminary characterization of the NarQ/P system","year":2010,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Fonds De La Recherche Scientifique - FNRS","keywords":"Biology; Mutant; Periplasmic space; Two-component regulatory system; Response regulator; Gene; In silico; Pathogen; Genetics; Sequence analysis; Molecular biology; Gene expression; Escherichia coli","score_opus":0.003684958682046909,"score_gpt":0.19029074573097304,"score_spread":0.18660578704892614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1835124919","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99740416,0.00013496549,0.000107303866,0.0011189993,0.0005705866,0.0004920609,0.0001616551,0.000005564182,0.0000047152],"genre_scores_gemma":[0.99937344,0.00001564039,0.00003905442,0.00015276925,0.00008536069,0.000027883312,0.00028037312,0.000011398981,0.000014095634],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891126,0.00021114196,0.0004085586,0.00027107375,0.000043132783,0.00015486004],"domain_scores_gemma":[0.9990949,0.000016523898,0.00036708542,0.00045310808,0.000054088596,0.000014272682],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038806564,0.00013179576,0.00019004368,0.000056454268,0.00005163212,0.0000117459185,0.00032728695,0.000246095,6.2330133e-7],"category_scores_gemma":[0.000020084017,0.000087471206,0.00005150547,0.000090273425,0.0004283783,0.0000032800774,0.00013369184,0.00015280161,8.483852e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008314296,0.00003348696,0.0015244201,0.00004900122,0.000031160675,0.0000013326005,0.00014291209,0.00000946047,0.9976945,0.0001962249,0.000030626026,0.00020371904],"study_design_scores_gemma":[0.00036900147,0.00014402649,0.0705746,0.00002791509,0.00002953012,0.00015452612,0.00013517914,0.00007502109,0.9274971,0.0000029014534,0.00088598725,0.000104256156],"about_ca_topic_score_codex":0.000023645443,"about_ca_topic_score_gemma":0.000008778089,"teacher_disagreement_score":0.070197456,"about_ca_system_score_codex":0.00000968971,"about_ca_system_score_gemma":0.00002336362,"threshold_uncertainty_score":0.35669723},"labels":[],"label_agreement":null},{"id":"W1844789377","doi":"10.1093/glycob/cwv095","title":"ArnT proteins that catalyze the glycosylation of lipopolysaccharide share common features with bacterial<i>N</i>-oligosaccharyltransferases","year":2015,"lang":"en","type":"article","venue":"Glycobiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Lipid A; Biochemistry; Periplasmic space; Aryl hydrocarbon receptor nuclear translocator; Bacterial outer membrane; Biology; Burkholderia cenocepacia; Transmembrane domain; Peptide sequence; Corynebacterium glutamicum; Protein structure; Chemistry; Amino acid; Genetics; Bacteria; Gene; Escherichia coli","score_opus":0.015899445413821274,"score_gpt":0.2275400080867342,"score_spread":0.21164056267291292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1844789377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965575,0.00066027854,0.00019475918,0.0011360946,0.00038813276,0.0005376823,0.0002778011,0.000028724613,0.00021902578],"genre_scores_gemma":[0.9978752,0.00015147877,0.00034701306,0.0001806357,0.00032923048,0.000070398884,0.00093420787,0.000027814247,0.00008400924],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987434,0.00012673142,0.00026700195,0.0004106945,0.0001147436,0.00033738703],"domain_scores_gemma":[0.9989568,0.000020424142,0.00017622778,0.000621823,0.00013766675,0.00008708582],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019618282,0.00025577535,0.00031507554,0.00005752654,0.00008124868,0.000023461527,0.0004654588,0.00043256377,0.000029048691],"category_scores_gemma":[0.000050903578,0.00015961344,0.000080868944,0.00009755541,0.00036590442,0.000005868867,0.00016443495,0.00017145679,0.000007962368],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009733101,0.00006610117,0.0037818074,0.000015564166,0.00009138917,0.000003938652,0.00006981789,0.000014191605,0.9920993,0.0003610172,0.0007964374,0.0017271572],"study_design_scores_gemma":[0.0008455684,0.0015439779,0.00405211,0.000017660352,0.0000439575,0.00014435103,0.000098213684,0.0000027565948,0.96660185,0.0001722438,0.026245316,0.0002320124],"about_ca_topic_score_codex":0.00047587333,"about_ca_topic_score_gemma":0.0016460404,"teacher_disagreement_score":0.025497437,"about_ca_system_score_codex":0.000014007271,"about_ca_system_score_gemma":0.00014209138,"threshold_uncertainty_score":0.6508847},"labels":[],"label_agreement":null},{"id":"W1846047896","doi":"10.1371/journal.ppat.1004967","title":"A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT","year":2015,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Key Research and Development Program of China; Peking University; Canadian Institutes of Health Research; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Silencer; Mechanism (biology); DNA; Cell biology; Computational biology; Biology; Genetics; Physics; Engineering","score_opus":0.043528224453358653,"score_gpt":0.2398541589471426,"score_spread":0.19632593449378394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1846047896","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955549,0.000078528705,0.0017994962,0.00021628017,0.0007112772,0.0004911646,0.0009262406,0.00003889959,0.00018319154],"genre_scores_gemma":[0.98539114,0.000102545164,0.010620743,0.00036406936,0.0013198898,0.00021455716,0.0014920916,0.00006354529,0.00043144546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99869895,0.00002978947,0.00024836752,0.00051334145,0.00012874234,0.00038082755],"domain_scores_gemma":[0.9990563,0.00000866308,0.000115191615,0.00036560933,0.00030593932,0.00014832069],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014556044,0.00022057,0.0002011547,0.000054214684,0.00009335003,0.000027672666,0.00020753396,0.0004860238,0.000049308393],"category_scores_gemma":[0.00018635642,0.00021134414,0.000104561674,0.00008537929,0.000056802168,0.0000032488485,0.0002085572,0.000060663384,0.00005945099],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025043354,0.0001387818,0.000030222354,0.000015092932,0.000060945873,0.0000016928137,0.000032203054,7.4588024e-7,0.9973023,0.00007619228,0.00061507884,0.0014763289],"study_design_scores_gemma":[0.0012365833,0.0008548762,0.00006432416,0.000010173239,0.00007283534,0.00003138514,0.000035682617,0.000045608547,0.98782384,0.0006043476,0.008906299,0.00031403327],"about_ca_topic_score_codex":0.000004695765,"about_ca_topic_score_gemma":0.000038913557,"teacher_disagreement_score":0.010163808,"about_ca_system_score_codex":0.000040242383,"about_ca_system_score_gemma":0.00010096379,"threshold_uncertainty_score":0.86183643},"labels":[],"label_agreement":null},{"id":"W1856886955","doi":"10.1002/9780470015902.a0000856.pub3","title":"Regulatory Systems: Two‐Component","year":2019,"lang":"en","type":"other","venue":"Encyclopedia of Life Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Response regulator; Regulator; Biology; Signal transduction; Histidine kinase; Signalling; Effector; Cell biology; Kinase; Computational biology; Genetics; Gene; Histidine; Bacterial protein; Amino acid","score_opus":0.009070356576647617,"score_gpt":0.23835817980924637,"score_spread":0.22928782323259875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1856886955","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06366185,0.018313954,0.000032701708,0.00014127689,0.0041180844,0.00049531396,0.00010245701,0.00004800675,0.91308635],"genre_scores_gemma":[0.08143463,0.021824716,0.0018078629,0.00016679824,0.0032722403,0.000033342145,0.00011052939,0.00027749492,0.8910724],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99861944,0.000057152763,0.0002915997,0.000520356,0.00025230166,0.0002591598],"domain_scores_gemma":[0.9990197,0.000008202627,0.00035082677,0.00051719986,0.000029964436,0.00007414086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024620185,0.00022340052,0.00034053883,0.00016466968,0.00003466627,0.00001323007,0.00063347956,0.00045875483,0.000096037],"category_scores_gemma":[0.000038538903,0.00018459641,0.000087334556,0.00013191576,0.0005018277,0.0000013708205,0.00017065537,0.0000879639,0.00006399486],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020805557,0.00007984554,0.0016518759,0.00021157779,0.000119891956,0.0000015160372,0.00001829626,0.00005967101,0.10173157,0.0011788595,0.8937032,0.0012228602],"study_design_scores_gemma":[0.00021486027,0.0002465498,0.00019424938,0.00007328842,0.00001515652,0.000003129893,0.000035747937,0.000008406728,0.0026444795,0.000011408448,0.9963044,0.00024832165],"about_ca_topic_score_codex":0.00015708432,"about_ca_topic_score_gemma":0.000041044383,"teacher_disagreement_score":0.10260116,"about_ca_system_score_codex":0.000005224974,"about_ca_system_score_gemma":0.00027162707,"threshold_uncertainty_score":0.7527623},"labels":[],"label_agreement":null},{"id":"W1861622576","doi":"10.1111/j.1365-2958.2012.08136.x","title":"Haemophore functions revisited","year":2012,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agence Nationale de la Recherche; Innovation, Science and Economic Development Canada; Indiana State Department of Health","keywords":"Biology; Siderophore; Bacteria; Biochemistry; Host (biology); Receptor; Membrane protein; Transmembrane protein; Cell biology; Microbiology; Membrane; Genetics","score_opus":0.01915102487601821,"score_gpt":0.26540291965294993,"score_spread":0.2462518947769317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1861622576","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002052104,0.996723,0.00037176404,0.00003280539,0.00086730625,0.0006441805,0.0005067016,0.00004851526,0.0006004969],"genre_scores_gemma":[0.00019131358,0.98795605,0.00048293074,0.00022736429,0.0006134223,0.00010431375,0.0091187665,0.00013690648,0.0011689148],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973487,0.0003213524,0.00062184315,0.00091734796,0.00004446758,0.00074624165],"domain_scores_gemma":[0.9982562,0.000011286398,0.00033846684,0.0011702499,0.00008529965,0.00013846513],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00019521429,0.00068975217,0.0012906941,0.00021449992,0.000099092795,0.000028609058,0.0006418423,0.0024709643,0.00014571832],"category_scores_gemma":[0.000040558054,0.00059676415,0.00075687247,0.0002874223,0.00026016528,0.0000014150078,0.00061099965,0.00047776292,0.00055544224],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012116426,0.00008041699,0.0000016759942,0.0012095121,0.00051184633,0.000019780955,0.0000022562058,1.5883555e-7,0.46107125,0.00010376603,0.0048250468,0.5321622],"study_design_scores_gemma":[0.00015470159,0.00020323238,3.799418e-7,0.0003086194,0.0007682966,0.00084997586,0.0000020106772,5.0055156e-8,0.006752287,0.000006151145,0.99032795,0.00062636443],"about_ca_topic_score_codex":0.0000036355352,"about_ca_topic_score_gemma":0.0000039965685,"teacher_disagreement_score":0.9855029,"about_ca_system_score_codex":0.00003913651,"about_ca_system_score_gemma":0.00016362521,"threshold_uncertainty_score":0.9996484},"labels":[],"label_agreement":null},{"id":"W1862479421","doi":"10.1038/84168","title":"Crystal structure of the retaining galactosyltransferase LgtC from Neisseria meningitidis in complex with donor and acceptor sugar analogs.","year":2001,"lang":"en","type":"article","venue":"Nature Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":343,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Medical Research Council; Vetenskapsrådet","keywords":"Galactosyltransferase; Glycoconjugate; Glycosyltransferase; Chemistry; Transferase; Glycosidic bond; Biochemistry; Galactose; Mutagenesis; Stereochemistry; Enzyme; Mutant","score_opus":0.005329925421373627,"score_gpt":0.23159417225031687,"score_spread":0.22626424682894325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1862479421","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980139,0.0007686433,0.00001341678,0.00040284518,0.0001812605,0.00020361805,0.00035215044,0.000009562458,0.000054591204],"genre_scores_gemma":[0.998192,0.00012046745,0.0007704831,0.00019764251,0.00016884452,0.0000022704528,0.0005229683,0.000017362518,0.000007956596],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988292,0.00009620451,0.00025014178,0.00046240297,0.000056805235,0.00030528163],"domain_scores_gemma":[0.99940825,0.000017129521,0.000119105534,0.00034064983,0.00006282045,0.000052037052],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000039813003,0.0002486479,0.000306782,0.00005815434,0.00007402497,0.000016321752,0.00032971604,0.000892167,0.000110578454],"category_scores_gemma":[0.000043266657,0.00015103431,0.000058024172,0.00019434701,0.00037591238,0.000004792004,0.00014799004,0.00045463696,1.2251975e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036189496,0.000004153763,0.1372436,0.000005409257,0.000051431984,0.0000016906555,0.000034862405,0.0000045027723,0.86099637,0.00021443186,0.000017809352,0.0010638663],"study_design_scores_gemma":[0.0011273442,0.0004421671,0.48192394,0.000010961788,0.000027674625,0.000081738195,0.00008130011,0.000019029178,0.5121133,0.0007873151,0.0031293798,0.00025586464],"about_ca_topic_score_codex":0.00016401033,"about_ca_topic_score_gemma":0.0017244472,"teacher_disagreement_score":0.34888306,"about_ca_system_score_codex":0.0000115930425,"about_ca_system_score_gemma":0.000045407323,"threshold_uncertainty_score":0.68812084},"labels":[],"label_agreement":null},{"id":"W1869853393","doi":"10.1111/j.1574-6968.2011.02228.x","title":"Maintaining network security: how macromolecular structures cross the peptidoglycan layer","year":2011,"lang":"en","type":"review","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Health Sciences Centre","funders":"Canadian Institutes of Health Research; Advanced Foods and Materials Network","keywords":"Peptidoglycan; Cell envelope; FtsZ; Bacterial cell structure; Cell wall; Cell biology; Macromolecule; Biochemistry; Biology; Structural biology; Lytic cycle; Cell division; Biophysics; Chemistry; Cell; Bacteria","score_opus":0.017754920166154764,"score_gpt":0.25985220916713325,"score_spread":0.2420972890009785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1869853393","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012007617,0.983812,0.00012128415,0.000894834,0.0018703544,0.00085904694,0.00029562754,0.00005043384,0.00008880208],"genre_scores_gemma":[0.0040049106,0.9869288,0.0005474083,0.0033385549,0.0026110306,0.000113391885,0.0020629598,0.00017304324,0.00021989204],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9965453,0.0005228343,0.00055161933,0.0011900592,0.00005621691,0.001133985],"domain_scores_gemma":[0.99788207,0.000033024276,0.0005792252,0.0013435243,0.00006241665,0.00009974381],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0003943603,0.00089718145,0.0012225208,0.000098200515,0.0002969805,0.00014055833,0.001543086,0.0019947372,0.00006892573],"category_scores_gemma":[0.000044232384,0.0006169982,0.0007557778,0.0002014907,0.0010433864,0.0000029938014,0.0009777958,0.000988617,0.000043810818],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001553449,0.000076886055,0.00008364721,0.0015085562,0.0036375104,0.00019816149,0.00019379554,0.000021277856,0.66896755,0.00092682766,0.103445075,0.22078536],"study_design_scores_gemma":[0.0002266882,0.00016896833,0.0000066483794,0.00027183144,0.00029767663,0.00060751813,0.000012140419,2.2464295e-7,0.0037856672,0.00011277996,0.9937745,0.00073537935],"about_ca_topic_score_codex":0.000020551084,"about_ca_topic_score_gemma":0.000043100154,"teacher_disagreement_score":0.8903294,"about_ca_system_score_codex":0.00004366129,"about_ca_system_score_gemma":0.00014736954,"threshold_uncertainty_score":0.9996281},"labels":[],"label_agreement":null},{"id":"W187634027","doi":"10.1128/jb.00192-10","title":"Protein Localization in <i>Escherichia coli</i> Cells: Comparison of the Cytoplasmic Membrane Proteins ProP, LacY, ProW, AqpZ, MscS, and MscL","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Cytoplasm; Escherichia coli; Membrane protein; Cell biology; Membrane; Biochemistry; Gene","score_opus":0.006724525467987902,"score_gpt":0.22367333971069644,"score_spread":0.21694881424270854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W187634027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979999,0.00016813053,0.0001402885,0.0006096341,0.00051211717,0.00052465353,0.000008202103,0.0000033819992,0.000033672583],"genre_scores_gemma":[0.9981106,0.000085252315,0.0014463861,0.000101229394,0.00017032263,0.000014175296,0.0000063151474,0.000017557446,0.000048162918],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987097,0.000149799,0.00063369726,0.00020480297,0.00009365491,0.00020839318],"domain_scores_gemma":[0.9989017,0.000009409355,0.00062252843,0.0002638823,0.00015284544,0.00004962396],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033616245,0.00016205854,0.00038025624,0.00007741524,0.000045984354,0.00001645476,0.00032222824,0.00041717512,0.000010291694],"category_scores_gemma":[0.00011209335,0.00011166121,0.00007632895,0.00013541777,0.00034745023,0.0000068190843,0.00016955263,0.00045376475,7.4529027e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027350115,0.00014808116,0.007787863,0.000055920238,0.000028570763,0.000001951163,0.000058359492,0.000020772623,0.99073964,0.00005150981,0.00005765606,0.00077618414],"study_design_scores_gemma":[0.00078200054,0.00087408244,0.007973867,0.00004327325,0.000018157227,0.000059022794,0.000035810048,0.00014474876,0.9745398,0.000059348768,0.015347325,0.00012253436],"about_ca_topic_score_codex":0.000023531387,"about_ca_topic_score_gemma":0.00035390884,"teacher_disagreement_score":0.0161998,"about_ca_system_score_codex":0.000009883839,"about_ca_system_score_gemma":0.00018039242,"threshold_uncertainty_score":0.45534122},"labels":[],"label_agreement":null},{"id":"W1880922090","doi":"10.1111/j.1751-7915.2010.00225.x","title":"New molecular techniques for pathogen analysis, <i>in silico</i> determination of RND efflux pump substrate specificity, shotgun proteomic monitoring of bioremediation and yeast bio‐applications","year":2010,"lang":"en","type":"article","venue":"Microbial Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Plasmid; Genetics; Campylobacter fetus; Computational biology; Gene; Campylobacter","score_opus":0.00524601029966621,"score_gpt":0.23031620408044357,"score_spread":0.22507019378077736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1880922090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97492784,0.00010217923,0.023596572,0.00024808844,0.00008196094,0.0008547104,0.00015323178,0.000027523058,0.0000079079655],"genre_scores_gemma":[0.9541907,0.00023913928,0.045202814,0.0000074486525,0.00010125502,0.000069712834,0.0001619769,0.000018356104,0.00000863363],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988436,0.00002076152,0.0004300984,0.00043037036,0.00005435201,0.0002208066],"domain_scores_gemma":[0.9991611,0.000007474259,0.0002684142,0.00042336396,0.00010239585,0.000037255497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001798891,0.00017446492,0.00030518897,0.0004429837,0.000030495426,0.000010975637,0.000280462,0.0009838652,0.0000032671678],"category_scores_gemma":[0.000040590905,0.00018575272,0.000102760976,0.00046382888,0.00021964297,0.0000045753013,0.0001337005,0.00016810467,4.541461e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045436962,0.000056367415,0.0038614469,0.000032823238,0.000041069474,3.494588e-7,0.000008518679,0.0000012562593,0.97617614,0.00028429166,0.0000037585432,0.019488549],"study_design_scores_gemma":[0.00035304838,0.00025960928,0.004139171,0.0000092379405,0.00008343478,0.0000071875465,0.000014464682,0.000017582355,0.99315953,0.0002612016,0.0015326098,0.00016291755],"about_ca_topic_score_codex":0.000045479446,"about_ca_topic_score_gemma":0.0002415521,"teacher_disagreement_score":0.021606244,"about_ca_system_score_codex":0.000011165832,"about_ca_system_score_gemma":0.00006361389,"threshold_uncertainty_score":0.758847},"labels":[],"label_agreement":null},{"id":"W1885271015","doi":"10.1046/j.1365-2958.2003.03377.x","title":"A conserved region within the <i>Bordetella pertussis</i> autotransporter BrkA is necessary for folding of its passenger domain","year":2003,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Biology; Secretion; Chaperone (clinical); Bacterial outer membrane; Mutant; Escherichia coli; Signal peptide; Effector; Bordetella pertussis; Protein folding; Transport protein; Cytoplasm; Cell biology; Biochemistry; Peptide sequence; Bacteria; Gene; Genetics","score_opus":0.009309615391233695,"score_gpt":0.2163103656706797,"score_spread":0.207000750279446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1885271015","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9879634,0.003042295,0.005860146,0.0018775703,0.00034836074,0.00060488103,0.00009424344,0.000016299122,0.00019285547],"genre_scores_gemma":[0.9944098,0.00022868172,0.0024196398,0.0024543847,0.000049346967,0.00005523868,0.00014161426,0.000043798584,0.0001974777],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983982,0.00019588305,0.0004331642,0.0005394951,0.0000415955,0.0003916688],"domain_scores_gemma":[0.9989779,0.000025695173,0.00023731081,0.00056227326,0.00014749124,0.000049309707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003060658,0.00027019138,0.0003206564,0.000055471344,0.00010402601,0.000014247724,0.00035688013,0.0006297989,0.000020069423],"category_scores_gemma":[0.00006547078,0.00020456438,0.00024656448,0.00012459575,0.0002872823,0.0000021772444,0.00007129912,0.00014200006,0.0000030120482],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012731536,0.000052984124,0.0001756495,0.00004050584,0.0001495495,0.000007940922,0.00006258738,0.0000081182,0.9962151,0.0015021258,0.0014838163,0.00017427732],"study_design_scores_gemma":[0.000771612,0.00036816983,0.000038098777,0.000015270629,0.000049358103,0.00014894886,0.000060856873,0.0000066474,0.8421384,0.00030061285,0.15587746,0.00022455663],"about_ca_topic_score_codex":0.000005701601,"about_ca_topic_score_gemma":0.000018365376,"teacher_disagreement_score":0.15439364,"about_ca_system_score_codex":0.000009567482,"about_ca_system_score_gemma":0.00010598478,"threshold_uncertainty_score":0.8341893},"labels":[],"label_agreement":null},{"id":"W1888448064","doi":"10.1111/j.1365-2958.2004.04767.x","title":"Evidence that WbpD is an <i>N</i>‐acetyltransferase belonging to the hexapeptide acyltransferase superfamily and an important protein for O‐antigen biosynthesis in <i>Pseudomonas aeruginosa</i> PAO1","year":2005,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Guelph","funders":"Roche Diagnostics; Guilin Medical University","keywords":"Biology; Acyltransferase; Biosynthesis; Biochemistry; Acetyltransferase; Mutant; Transferase; Glucosyltransferase; Enzyme; Gene; Acetylation","score_opus":0.01669261582252708,"score_gpt":0.24713140500938865,"score_spread":0.2304387891868616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1888448064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.982587,0.0031636183,0.0057065412,0.0065284106,0.00008613413,0.001616212,0.00027288718,0.00003240775,0.000006788287],"genre_scores_gemma":[0.9854984,0.0011695701,0.006695879,0.005938266,0.00017162856,0.0002343166,0.00020028999,0.000067847235,0.00002374423],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99727875,0.00024632967,0.0004901405,0.0011314506,0.00007502918,0.0007783201],"domain_scores_gemma":[0.9987274,0.000030162568,0.000085416505,0.0008771938,0.00008460573,0.0001952348],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006357898,0.00044624307,0.00039989068,0.00013912968,0.00017657313,0.000071505456,0.000658846,0.00055045943,0.00001768078],"category_scores_gemma":[0.000080618025,0.00036817932,0.00013993421,0.00018815722,0.00024043642,0.000020417572,0.00015093519,0.00021510561,0.000005234085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003498712,0.00012297758,0.0013723021,0.000021377715,0.000052040035,0.000013605038,0.0001795802,0.000033421504,0.9889678,0.000068083384,0.00011539395,0.0087036],"study_design_scores_gemma":[0.0007027699,0.0010870699,0.00055062055,0.00005650171,0.000033297878,0.00009875688,0.0000839136,0.000048707192,0.9639813,0.000034401215,0.032821037,0.00050167117],"about_ca_topic_score_codex":0.00015065433,"about_ca_topic_score_gemma":0.0017440122,"teacher_disagreement_score":0.032705642,"about_ca_system_score_codex":0.000025528097,"about_ca_system_score_gemma":0.000101277015,"threshold_uncertainty_score":0.99987704},"labels":[],"label_agreement":null},{"id":"W1888599571","doi":"10.1046/j.1365-2958.2002.02938.x","title":"Bacterial conjugative transfer: visualization of successful mating pairs and plasmid establishment in live <i>Escherichia coli</i>","year":2002,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Alberta Heritage Foundation for Medical Research","keywords":"Plasmid; Biology; Escherichia coli; Bacteria; Bacterial conjugation; Genetics; DNA; Horizontal gene transfer; Cell biology; Gene; Genome","score_opus":0.005872154564848963,"score_gpt":0.20408488058944912,"score_spread":0.19821272602460016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1888599571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975976,0.00073294865,0.00078210625,0.00015466391,0.00015589563,0.0003082516,0.00008012567,0.00001146485,0.00017698176],"genre_scores_gemma":[0.9982426,0.0005018677,0.0006360169,0.00027123268,0.000036826797,0.000020908768,0.00024509485,0.00002396475,0.000021495724],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986905,0.00017482929,0.00038267914,0.0004240528,0.000036948793,0.00029099113],"domain_scores_gemma":[0.9995768,0.000013792977,0.00009581378,0.00019992703,0.000069205875,0.000044479097],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013230639,0.00020733256,0.00029885842,0.000088862565,0.000034548906,0.000016518847,0.00016285593,0.00043924258,0.000092843045],"category_scores_gemma":[0.00004267754,0.00021140322,0.000056604254,0.00013817594,0.0002624703,0.0000043821806,0.00011992141,0.0001028354,0.0000038710914],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000949057,0.00009859474,0.0010740694,0.000034316403,0.000045906596,0.0000063854473,0.00017411626,0.000013615885,0.9976334,0.00020854801,0.00008793035,0.0005281971],"study_design_scores_gemma":[0.0012194975,0.0006634272,0.00035138076,0.000026804306,0.000018760422,0.000022359154,0.00009266061,0.00006723917,0.9907341,0.000026139238,0.0065506585,0.00022697826],"about_ca_topic_score_codex":0.000043233264,"about_ca_topic_score_gemma":0.00007751561,"teacher_disagreement_score":0.006899319,"about_ca_system_score_codex":0.000013955998,"about_ca_system_score_gemma":0.000020804377,"threshold_uncertainty_score":0.86207736},"labels":[],"label_agreement":null},{"id":"W1889844500","doi":"10.1046/j.1365-2958.2003.03354.x","title":"Transcriptional organization and regulation of the <i>Escherichia coli</i> K30 group 1 capsule biosynthesis (<i>cps</i>) gene cluster","year":2003,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Biology; Operon; Gene; Transcription (linguistics); Gene cluster; Escherichia coli; Promoter; lac operon; Genetics; Antitermination; Transcriptional regulation; Transcription factor; Gene expression","score_opus":0.0028805341320819484,"score_gpt":0.16234353251598393,"score_spread":0.159462998383902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1889844500","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941913,0.0007157035,0.004187744,0.00027280196,0.00023025287,0.00023332429,0.000056917317,0.000010288863,0.000101656165],"genre_scores_gemma":[0.9964607,0.00013185355,0.0023513734,0.0006971125,0.00003319606,0.0000067008414,0.00017684195,0.000026237967,0.000115987976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898547,0.00019674462,0.00024130984,0.00034009825,0.000038999897,0.00019740748],"domain_scores_gemma":[0.99942404,0.0000052020096,0.000117030744,0.0003230212,0.00009852673,0.000032198313],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013767708,0.00016256342,0.00016505919,0.000037341702,0.000079814825,0.000010689728,0.00016932159,0.00040632606,0.000032714674],"category_scores_gemma":[0.000070297145,0.00013187861,0.00006974512,0.0001773863,0.00025816547,0.000002420608,0.00008178895,0.00007926762,0.0000023575756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018277391,0.00004399019,0.0003178955,0.000010110955,0.000046370547,3.6388712e-7,0.00001140287,0.000014122535,0.99770117,0.0015850976,0.00013918884,0.00011201196],"study_design_scores_gemma":[0.00044747174,0.0001102735,0.0023845194,0.0000046002183,0.000035584417,0.00007643298,0.0000065951645,0.0000036842048,0.96136224,0.00010535668,0.03531642,0.00014683577],"about_ca_topic_score_codex":0.0000059074137,"about_ca_topic_score_gemma":0.000011263091,"teacher_disagreement_score":0.03633894,"about_ca_system_score_codex":0.000008782903,"about_ca_system_score_gemma":0.000049240723,"threshold_uncertainty_score":0.53778535},"labels":[],"label_agreement":null},{"id":"W1892807652","doi":"10.1046/j.1365-2958.2003.03551.x","title":"Interaction between the IncHI1 plasmid R27 coupling protein and type IV secretion system: TraG associates with the coiled‐coil mating pair formation protein TrhB","year":2003,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research","keywords":"Biology; Immunoprecipitation; Plasmid; Protein–protein interaction; Transmembrane domain; Cell biology; Amino acid; Two-hybrid screening; Transmembrane protein; Biochemistry; DNA; Gene; Receptor","score_opus":0.005497435498826693,"score_gpt":0.1934281778525952,"score_spread":0.1879307423537685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1892807652","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951137,0.00039330003,0.0026297378,0.00077245006,0.00008456542,0.0008432141,0.000021521682,0.000031723393,0.00010979079],"genre_scores_gemma":[0.9989278,0.000014253815,0.00043670528,0.00011350349,0.00007106916,0.000090332294,0.0002629889,0.0000271253,0.000056224857],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99878114,0.0002641317,0.00027215228,0.00033134315,0.00005320458,0.00029800594],"domain_scores_gemma":[0.999293,0.000019810366,0.00026710663,0.00027915454,0.00010972233,0.00003115178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046844984,0.00022102964,0.00020298296,0.000040277573,0.00025716182,0.00005768015,0.00017914038,0.00039702695,0.000004267267],"category_scores_gemma":[0.000071939,0.0001356224,0.000051317464,0.00012745285,0.00017908028,0.000006998033,0.000087283195,0.00025698784,0.000005750297],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006612104,0.000013119973,0.00020042132,0.000044095013,0.000081537495,0.0000019084446,0.000053679643,0.000037128284,0.998842,0.00021126591,0.00007267917,0.00037601887],"study_design_scores_gemma":[0.0005443207,0.0006603875,0.00011438503,0.000065673376,0.000053919015,0.00011417131,0.0003721968,0.00022330174,0.9800407,0.000032526892,0.017564405,0.00021401083],"about_ca_topic_score_codex":0.000021763513,"about_ca_topic_score_gemma":0.00006083918,"teacher_disagreement_score":0.018801324,"about_ca_system_score_codex":0.00003931908,"about_ca_system_score_gemma":0.000044663586,"threshold_uncertainty_score":0.55305207},"labels":[],"label_agreement":null},{"id":"W1896232177","doi":"10.1111/j.1574-6968.2010.02107.x","title":"mutL as a genetic switch of bacterial mutability: turned on or off through repeat copy number changes","year":2010,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Biology; DNA mismatch repair; Genetics; Population; Mutation Accumulation; Mutation; DNA repair; Gene; Genome; Medicine","score_opus":0.00764024617075081,"score_gpt":0.23866173224218315,"score_spread":0.23102148607143233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1896232177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99406946,0.00006119465,0.000029418687,0.0032562877,0.0017947609,0.00038965832,0.00015324361,0.000033538916,0.00021241073],"genre_scores_gemma":[0.99224395,0.00019965677,0.0022945842,0.003687951,0.0008131595,0.000037886795,0.0004359106,0.000049011654,0.0002379179],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980683,0.000115477174,0.0003967476,0.0007896638,0.000058290352,0.0005715403],"domain_scores_gemma":[0.99867415,0.00003300564,0.00023750331,0.000905271,0.00008148005,0.00006859058],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001690046,0.0003602866,0.000432852,0.000055497316,0.00008449376,0.000019878542,0.00048738107,0.0009330688,0.00067513215],"category_scores_gemma":[0.00011725969,0.00028925942,0.00014259007,0.00011846149,0.00065619993,0.0000030545225,0.00027647518,0.0003494643,0.00009138848],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00089796406,0.0001181524,0.0011152221,0.00001707075,0.000112077236,0.00001596636,0.000077020966,9.965954e-7,0.9909948,0.000027307433,0.0037952098,0.002828214],"study_design_scores_gemma":[0.0008565269,0.00081933,0.0008995443,0.0000102549475,0.000028337397,0.00029090993,0.000019419675,4.1847971e-7,0.77920675,0.000028171431,0.21755826,0.0002820504],"about_ca_topic_score_codex":0.00007841975,"about_ca_topic_score_gemma":0.0005266783,"teacher_disagreement_score":0.21376306,"about_ca_system_score_codex":0.00001424467,"about_ca_system_score_gemma":0.000083914085,"threshold_uncertainty_score":0.99995595},"labels":[],"label_agreement":null},{"id":"W1898058678","doi":"10.1111/j.1365-2958.2009.06982.x","title":"Three (and more) component regulatory systems – auxiliary regulators of bacterial histidine kinases","year":2009,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Response regulator; Biology; Histidine kinase; Regulator; Two-component regulatory system; Kinase; Signal transduction; Cell biology; Transmembrane protein; Signalling; Histidine; Computational biology; Biochemistry; Gene; Enzyme; Bacterial protein; Receptor","score_opus":0.011155657234973335,"score_gpt":0.23988438779807683,"score_spread":0.2287287305631035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1898058678","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.047271214,0.950349,0.0001304492,0.000029735045,0.00087682536,0.00086380274,0.00041454533,0.000030196643,0.00003425832],"genre_scores_gemma":[0.004261542,0.9909448,0.00046275745,0.000054420645,0.00037298264,0.000047933117,0.003668606,0.00010862404,0.00007836012],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99702233,0.00025091216,0.0010378514,0.0010706686,0.00008156038,0.0005366525],"domain_scores_gemma":[0.9978649,0.000020721925,0.0007220261,0.0011544587,0.00011460366,0.00012328192],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00025262262,0.00076784525,0.0020601628,0.00024938516,0.00006588883,0.000025033212,0.0006066153,0.0020767788,0.000015934365],"category_scores_gemma":[0.000047195423,0.00067641406,0.00049816485,0.00015518912,0.00069071655,0.0000021105386,0.000541412,0.00030117494,0.000006420469],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005830923,0.00008693007,0.0000025596098,0.0018994687,0.00038343397,0.000031060747,0.0000031582854,0.0000017646829,0.9010761,0.0003967298,0.0010411658,0.095019355],"study_design_scores_gemma":[0.0004168023,0.0006096792,0.000016478985,0.0010294981,0.00048669564,0.00068720325,0.000003123961,0.0000012383625,0.038835194,0.000020192076,0.95724106,0.00065281213],"about_ca_topic_score_codex":0.000034631663,"about_ca_topic_score_gemma":0.00001404052,"teacher_disagreement_score":0.95619994,"about_ca_system_score_codex":0.00005008967,"about_ca_system_score_gemma":0.00022641457,"threshold_uncertainty_score":0.9995687},"labels":[],"label_agreement":null},{"id":"W1899206151","doi":"10.1111/mmi.12655","title":"Structure of the atypical bacteriocin pectocin <scp>M</scp>2 implies a novel mechanism of protein uptake","year":2014,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"University of Glasgow; Diamond Light Source; Wellcome Trust; Wellcome","keywords":"Colicin; Bacteriocin; Biology; Ferredoxin; Bacterial outer membrane; Microbiology; Lysozyme; Biochemistry; Bacteria; Genetics; Escherichia coli; Enzyme; Gene","score_opus":0.003501353520505888,"score_gpt":0.183899664894102,"score_spread":0.1803983113735961,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1899206151","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947214,0.00019751294,0.0039923005,0.00015002994,0.00022296314,0.00041082545,0.00019479878,0.000010322163,0.00009985686],"genre_scores_gemma":[0.9965507,0.000011225539,0.0028980225,0.0002186391,0.00006786265,0.000009997639,0.00010085678,0.000030566818,0.000112153044],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986077,0.00013721365,0.00040902034,0.00043640897,0.000058129604,0.00035153207],"domain_scores_gemma":[0.99882376,0.000015113038,0.00029351286,0.0006994907,0.00012489421,0.000043209635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012682605,0.00025008255,0.00036762128,0.00005735456,0.00005038968,0.000007864524,0.00059849565,0.0007114612,0.000014844609],"category_scores_gemma":[0.00023674664,0.00018491673,0.00020343906,0.00013860672,0.00041035446,0.0000013955732,0.00048088198,0.00019346018,0.0000019627184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034113247,0.000052306783,0.00006565114,0.00003199412,0.00007849617,4.0560053e-7,0.000024118455,0.000005373894,0.9921281,0.007146825,0.00005244661,0.00038022362],"study_design_scores_gemma":[0.0005593962,0.0005195977,0.0011757545,0.000018771048,0.000028934814,0.00006307057,0.000023724942,0.000005826721,0.97384524,0.00065540435,0.023010861,0.0000934434],"about_ca_topic_score_codex":0.000012242708,"about_ca_topic_score_gemma":0.000036838403,"teacher_disagreement_score":0.022958415,"about_ca_system_score_codex":0.000008711906,"about_ca_system_score_gemma":0.00007085239,"threshold_uncertainty_score":0.75406855},"labels":[],"label_agreement":null},{"id":"W1899616654","doi":"10.1128/mbio.00823-15","title":"Cyclic Rhamnosylated Elongation Factor P Establishes Antibiotic Resistance in Pseudomonas aeruginosa","year":2015,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; National Cancer Institute; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; University of California, San Diego","keywords":"Pseudomonas aeruginosa; Microbiology; Escherichia coli; Rhamnose; Glycosylation; Elongation factor; Biology; Biochemistry; Bacteria; Chemistry; Mannose; Genetics; Ribosome; Gene","score_opus":0.015209005068909931,"score_gpt":0.23643369732069625,"score_spread":0.22122469225178631,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1899616654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970258,0.000830522,0.000068509486,0.0005546855,0.0003206126,0.00016480211,0.00002220019,0.000029330728,0.0009835513],"genre_scores_gemma":[0.99801594,0.00013999858,0.00095696555,0.000108607754,0.00012815434,0.000004203092,0.00014374762,0.000018756426,0.00048362053],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989638,0.00005369384,0.00022634999,0.0003700907,0.000104222454,0.00028184315],"domain_scores_gemma":[0.9994056,0.000005438087,0.00007775501,0.00035070308,0.00007550484,0.00008496996],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001283449,0.00015636416,0.00015845461,0.000079710415,0.000031501084,0.00004061314,0.00020820138,0.00036288434,0.0000098211485],"category_scores_gemma":[0.00012434239,0.00015127216,0.00004041723,0.00021093222,0.00008657691,0.000005341242,0.000096872835,0.000115266346,0.000024806694],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009703216,0.00006390851,0.011496494,0.000009751043,0.0000125597235,0.000008796398,0.00006944251,0.0000053221315,0.9855221,0.00010887145,0.0013382775,0.0012674519],"study_design_scores_gemma":[0.00092503655,0.00020328951,0.055659417,0.00002112109,0.0000064481133,0.000007354483,0.00006911993,0.000013868693,0.9063859,0.00034201564,0.036084667,0.00028176786],"about_ca_topic_score_codex":0.00008724583,"about_ca_topic_score_gemma":0.00085996266,"teacher_disagreement_score":0.0791362,"about_ca_system_score_codex":0.000029058701,"about_ca_system_score_gemma":0.00007808675,"threshold_uncertainty_score":0.61687},"labels":[],"label_agreement":null},{"id":"W1908391556","doi":"10.1111/j.1365-2958.2006.05377.x","title":"Secretion by numbers: protein traffic in prokaryotes","year":2006,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences","keywords":"Biology; Secretion; Computational biology; Secretory protein; Genetics; Biochemistry","score_opus":0.0020348144295529035,"score_gpt":0.18078346418798608,"score_spread":0.17874864975843316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1908391556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965507,0.0013052478,0.00059756567,0.00055671454,0.00010127702,0.00043717283,0.00005290265,0.000030018136,0.00036844632],"genre_scores_gemma":[0.9968262,0.000028301438,0.00088367943,0.00027132037,0.00007991345,0.00006155292,0.0013888265,0.000031512427,0.00042872006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986215,0.00011375388,0.00028883616,0.000531083,0.00002842617,0.00041637992],"domain_scores_gemma":[0.9995323,0.0000037595926,0.000083678686,0.00031029462,0.00003803585,0.00003195786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012179764,0.00022038138,0.0001998326,0.000078826866,0.0000351678,0.000017681694,0.00023109953,0.00061661395,0.000026866033],"category_scores_gemma":[0.000025075911,0.00022184839,0.00008005424,0.0001434865,0.00017004467,0.000001984801,0.00010857501,0.00015029163,0.000024189401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053711763,0.00011389883,0.00017802091,0.000009296884,0.000014016455,0.000012139809,0.0000036894,0.000051949704,0.99641377,0.00022158718,0.0022051353,0.00072280865],"study_design_scores_gemma":[0.0006195772,0.0002890434,0.00010834911,0.000009536824,0.000005615073,0.00005492888,0.0000070573533,0.000012602767,0.9016461,0.00019254127,0.09679771,0.00025692815],"about_ca_topic_score_codex":0.00008591233,"about_ca_topic_score_gemma":0.00020091316,"teacher_disagreement_score":0.09476764,"about_ca_system_score_codex":0.00002175322,"about_ca_system_score_gemma":0.00003887271,"threshold_uncertainty_score":0.90467143},"labels":[],"label_agreement":null},{"id":"W1911162384","doi":"10.1002/3527600906.mcb.201100039","title":"Protein Abundance Variation","year":2012,"lang":"en","type":"reference-entry","venue":"Encyclopedia of Molecular Cell Biology and Molecular Medicine","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Gene expression; Abundance (ecology); Gene; Computational biology; Regulation of gene expression; Genetics; Genome; Protein degradation; Protein biosynthesis; Evolutionary biology; Cell biology; Ecology","score_opus":0.005739296517802246,"score_gpt":0.22885522685188012,"score_spread":0.22311593033407787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1911162384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.46307266,0.2191762,0.007586597,0.0012294138,0.0029617369,0.0019387967,0.00030488908,0.00006488841,0.30366483],"genre_scores_gemma":[0.73128545,0.2404362,0.004676733,0.0010103991,0.0021872362,0.00021040197,0.004975017,0.00022037003,0.014998169],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971558,0.000300664,0.0007311673,0.0009425642,0.0002316621,0.0006381354],"domain_scores_gemma":[0.99809396,0.000019669296,0.000616808,0.000859603,0.00018447502,0.0002254558],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00039240328,0.0006625563,0.00087427866,0.00023259142,0.00007334654,0.000007608131,0.0004945155,0.0022342964,0.00009183815],"category_scores_gemma":[0.00020491544,0.0005747432,0.0001757963,0.000185221,0.00070788554,0.0000039983834,0.00041797265,0.00058371125,0.000009751244],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009505686,0.00011194839,0.0001119141,0.0003777452,0.00019403305,0.000020157568,0.000046560104,0.0000010143137,0.9692762,0.00083593227,0.0034438018,0.025485627],"study_design_scores_gemma":[0.0010995258,0.0013431724,0.00020745759,0.0002335847,0.00028723475,0.000019125007,0.000017389812,0.000002083545,0.23095155,0.0007255194,0.7645081,0.00060526567],"about_ca_topic_score_codex":0.000071183415,"about_ca_topic_score_gemma":0.000008176698,"teacher_disagreement_score":0.7610643,"about_ca_system_score_codex":0.00001863798,"about_ca_system_score_gemma":0.00022372254,"threshold_uncertainty_score":0.9996704},"labels":[],"label_agreement":null},{"id":"W1918630801","doi":"10.1111/j.1574-6968.2010.02064.x","title":"The F plasmid transfer activator TraJ is a dimeric helix-turn-helix DNA-binding protein","year":2010,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Plasmid; Biology; DNA; Bacterial conjugation; Molecular biology; DNA-binding protein; Psychological repression; Binding site; Operon; Chromatin immunoprecipitation; Promoter; Biochemistry; Transcription factor; Gene; Escherichia coli; Gene expression","score_opus":0.004150967153326261,"score_gpt":0.19163076616754804,"score_spread":0.18747979901422177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1918630801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9872698,0.00011140709,0.000105313375,0.01033685,0.0014849196,0.00048221092,0.00012289405,0.00004158273,0.000045023546],"genre_scores_gemma":[0.99481636,0.000093338436,0.0004093365,0.003242162,0.000497088,0.00008795323,0.00017909767,0.00005274453,0.00062189205],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99817634,0.00008977416,0.00032936013,0.00065249053,0.000053359287,0.0006986872],"domain_scores_gemma":[0.9991234,0.000023279219,0.00009197479,0.0006300211,0.00004252022,0.00008882056],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021149225,0.00034891677,0.0002560078,0.00006714851,0.00034323975,0.000059247475,0.0006494032,0.000787293,0.00007286203],"category_scores_gemma":[0.00003891148,0.0002565051,0.00018974772,0.00013431274,0.0006663089,0.0000045818524,0.00015051948,0.0005912015,0.00008387301],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013818318,0.00003738385,0.00012339855,0.000006473595,0.00012130223,0.000004056905,0.000041642736,2.872356e-7,0.9906098,0.000037243342,0.006780609,0.0020995825],"study_design_scores_gemma":[0.0004161533,0.00016074293,0.00015258799,0.0000058117425,0.000014211776,0.00007255448,0.000015832935,8.285544e-7,0.68379486,0.000005968476,0.31511626,0.00024416266],"about_ca_topic_score_codex":0.0000151657405,"about_ca_topic_score_gemma":0.0000854885,"teacher_disagreement_score":0.30833566,"about_ca_system_score_codex":0.000015144087,"about_ca_system_score_gemma":0.00006406342,"threshold_uncertainty_score":0.99998873},"labels":[],"label_agreement":null},{"id":"W1923825601","doi":"10.1111/j.1365-2958.2010.07359.x","title":"Tn<i>10</i>/IS<i>10</i> transposition is downregulated at the level of transposase expression by the RNA‐binding protein Hfq","year":2010,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Transposase; Transposition (logic); RNA; RNA silencing; RNA interference; Gene expression; Cell biology; Molecular biology; RNA-induced transcriptional silencing; Antisense RNA; Translation (biology); Sense (electronics); Gene; Messenger RNA; Transposable element; Genetics; Chemistry","score_opus":0.008115141185886281,"score_gpt":0.2093265114220062,"score_spread":0.20121137023611993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1923825601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922497,0.0006755556,0.00048048253,0.004178862,0.00017464261,0.00063176645,0.00148006,0.000018319934,0.00011059692],"genre_scores_gemma":[0.99319327,0.000059985716,0.00037603473,0.0012539161,0.00006297776,0.000059956972,0.0014511592,0.00004530976,0.003497375],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99825585,0.00018405971,0.00041966356,0.0006015234,0.000085101354,0.00045380808],"domain_scores_gemma":[0.99872005,0.000013955759,0.00021533054,0.00086884235,0.00011976086,0.000062077284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025312658,0.0003319806,0.00027481653,0.000045634668,0.00023998358,0.00002048567,0.0006710893,0.0009009036,0.00060680363],"category_scores_gemma":[0.000018487,0.00021275504,0.00024279683,0.00015365053,0.0006808704,0.000003570656,0.00016953789,0.00033504935,0.000047547233],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030387123,0.00007673095,0.000008986565,0.000016997834,0.00008191252,0.0000034388713,0.000074512216,0.0000018759988,0.9875883,0.00002489834,0.011023547,0.0007949663],"study_design_scores_gemma":[0.0007051806,0.00030624645,0.000023019167,0.000015892036,0.00004621302,0.00007375001,0.000012940379,0.000002851629,0.8460268,0.000029346833,0.15252653,0.0002312469],"about_ca_topic_score_codex":0.000030276831,"about_ca_topic_score_gemma":0.00005609727,"teacher_disagreement_score":0.14156148,"about_ca_system_score_codex":0.000012654348,"about_ca_system_score_gemma":0.00005263839,"threshold_uncertainty_score":0.8675899},"labels":[],"label_agreement":null},{"id":"W1932801006","doi":"10.1111/mmi.13000","title":"Involvement of reductases <scp>I</scp>ru<scp>O</scp> and <scp>N</scp>tr<scp>A</scp> in iron acquisition by <scp><i>S</i></scp><i>taphylococcus aureus</i>","year":2015,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Mutant; Siderophore; Deferoxamine; Heme; Biology; Biochemistry; Microbiology; Virulence; Wild type; Enzyme; Gene","score_opus":0.007261828551289102,"score_gpt":0.21190008904895716,"score_spread":0.20463826049766806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1932801006","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9679183,0.02506515,0.00060691225,0.0002151052,0.0012622793,0.0016810523,0.0014813539,0.00015438326,0.0016154682],"genre_scores_gemma":[0.9794261,0.0044214525,0.002156742,0.0028174242,0.0006652752,0.00030238964,0.0070193987,0.0003390276,0.0028521824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9912164,0.00093071884,0.0019177172,0.00287352,0.00044108962,0.0026205617],"domain_scores_gemma":[0.99458283,0.0006709407,0.0012694639,0.00207559,0.000655182,0.00074599613],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0012341465,0.0016860777,0.0018078679,0.0007356252,0.0002979346,0.0001832651,0.0017155942,0.0033915294,0.0000074001928],"category_scores_gemma":[0.0029894745,0.0017437587,0.0005789657,0.0009647055,0.0016477049,0.000049478116,0.0018786305,0.0011195028,0.000089757224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000183372,0.0007296288,0.0013715521,0.00019327577,0.0003878733,0.00010674566,0.00069752976,0.0000815405,0.87706405,0.00016001766,0.11887499,0.00031444657],"study_design_scores_gemma":[0.0026136572,0.0018497222,0.00042219635,0.00008637407,0.000182482,0.00018788401,0.0019256568,0.000015434007,0.6405897,0.00036489486,0.35162014,0.00014183925],"about_ca_topic_score_codex":0.00031696257,"about_ca_topic_score_gemma":0.00021220317,"teacher_disagreement_score":0.23647434,"about_ca_system_score_codex":0.00020925596,"about_ca_system_score_gemma":0.00048423058,"threshold_uncertainty_score":0.9995886},"labels":[],"label_agreement":null},{"id":"W1933389414","doi":"10.1186/s12934-015-0315-4","title":"Enhanced secretion of a methyl parathion hydrolase in Pichia pastoris using a combinational strategy","year":2015,"lang":"en","type":"article","venue":"Microbial Cell Factories","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"National High-tech Research and Development Program; National Natural Science Foundation of China","keywords":"Pichia pastoris; Secretion; Heterologous; Secretory protein; Signal peptide; Biochemistry; Endoplasmic reticulum; Pichia; Protein precursor; Hydrolase; Biology; Recombinant DNA; Chemistry; Enzyme; Gene","score_opus":0.020155009228824225,"score_gpt":0.24683492251185035,"score_spread":0.2266799132830261,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1933389414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980322,0.00028350035,0.0010136189,0.000022930264,0.0003484148,0.0001246114,0.000041896248,0.000006824049,0.0001259802],"genre_scores_gemma":[0.9990256,0.000047177855,0.00053645,0.000015150628,0.0001049052,0.000003461991,0.0001824615,0.000012181148,0.00007263997],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992116,0.0000662066,0.00024018825,0.00022983311,0.000079883364,0.00017230058],"domain_scores_gemma":[0.9995501,0.0000051497977,0.00011908437,0.00015626664,0.00012232707,0.00004706042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011388132,0.00013318971,0.00016776368,0.000064343265,0.000025428488,0.000015373624,0.00011593251,0.00029060166,0.000009431613],"category_scores_gemma":[0.000030192647,0.000134739,0.000044938835,0.00011915359,0.000087168795,0.0000050777767,0.000075847296,0.000092769485,0.000001979395],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011303874,0.00009051568,0.0003495254,0.000013855802,0.00000911285,8.1077445e-7,0.00013047413,0.00018850205,0.9987874,0.000046004323,0.00007327493,0.00019746416],"study_design_scores_gemma":[0.0008057996,0.00042133496,0.0005351559,0.0000073877095,0.000008619899,0.0000026734733,0.00011223873,0.000052076997,0.9949846,0.00013196073,0.0027936776,0.00014445596],"about_ca_topic_score_codex":0.00012909691,"about_ca_topic_score_gemma":0.00012700327,"teacher_disagreement_score":0.0038028029,"about_ca_system_score_codex":0.00003346492,"about_ca_system_score_gemma":0.00016591517,"threshold_uncertainty_score":0.5494497},"labels":[],"label_agreement":null},{"id":"W1934407509","doi":"10.1016/j.febslet.2015.05.051","title":"VirB6 and VirB10 from the <i>Brucella</i> type IV secretion system interact via the N‐terminal periplasmic domain of VirB6","year":2015,"lang":"en","type":"article","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Concordia University","keywords":"Periplasmic space; Secretion; Terminal (telecommunication); Domain (mathematical analysis); Brucella; Chemistry; Brucella abortus; Cell biology; Type VI secretion system; Microbiology; Biochemistry; Biology; Computer science; Brucellosis; Virology; Escherichia coli; Mathematics; Gene; Virulence","score_opus":0.007089424605010604,"score_gpt":0.2009105895224986,"score_spread":0.193821164917488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1934407509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949222,0.0004646069,0.0006731076,0.0030440253,0.0005693689,0.0001745683,0.000034405013,0.000011823133,0.00010586173],"genre_scores_gemma":[0.9975697,0.00005806326,0.00029331367,0.0015751787,0.00037414144,0.0000075127327,0.00007803688,0.000017508894,0.000026552554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911666,0.00013061223,0.00020753276,0.00025983943,0.00011005556,0.00017532574],"domain_scores_gemma":[0.99932843,0.000022986464,0.00013095074,0.0004214141,0.000047673308,0.000048552465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022508523,0.00015346227,0.00014814264,0.000018298277,0.000072881296,0.00003706698,0.00030557986,0.00017563866,0.000008639031],"category_scores_gemma":[0.000023569819,0.000093939845,0.000047666457,0.00006799183,0.00023845071,0.0000031388008,0.00019216177,0.0001395842,0.000012369784],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020039133,0.000010169978,0.00047786662,0.000008902406,0.000043836273,0.0000048255406,0.00014468974,0.000008103049,0.9951293,0.000030675514,0.002957828,0.0009834134],"study_design_scores_gemma":[0.002616389,0.0022531268,0.006851815,0.00015771035,0.00021118349,0.000532577,0.0021756988,0.0017235401,0.6731283,0.00025144947,0.309231,0.0008671673],"about_ca_topic_score_codex":0.00015940938,"about_ca_topic_score_gemma":0.00007086473,"teacher_disagreement_score":0.32200095,"about_ca_system_score_codex":0.000017611948,"about_ca_system_score_gemma":0.000029881026,"threshold_uncertainty_score":0.38307557},"labels":[],"label_agreement":null},{"id":"W1934579812","doi":"10.1074/jbc.m115.654756","title":"The Soluble Periplasmic Domains of Escherichia coli Cell Division Proteins FtsQ/FtsB/FtsL Form a Trimeric Complex with Submicromolar Affinity","year":2015,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"","keywords":"Periplasmic space; Escherichia coli; Cell division; Cell biology; Membrane protein; Bacterial outer membrane; Chemistry; Cell membrane; Cell Cycle Protein; Cell; Biology; Biochemistry; Cell cycle; Membrane; Gene","score_opus":0.022432827957111698,"score_gpt":0.2325333860992371,"score_spread":0.21010055814212542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1934579812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980894,0.0006025763,0.00031331085,0.00020267243,0.00010511903,0.00017224568,0.000018763752,0.00000777882,0.00048817694],"genre_scores_gemma":[0.9965143,0.00030715615,0.0027614566,0.000052787553,0.00017630153,0.0000068020313,0.000025926278,0.000015677206,0.0001395629],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986056,0.0001031948,0.00053258013,0.00022130132,0.0002002755,0.0003370441],"domain_scores_gemma":[0.99844056,0.000035294735,0.000662273,0.00033814745,0.00034273852,0.00018100819],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064406,0.00023174536,0.00037554966,0.000018580804,0.00015122168,0.00003535771,0.0005920132,0.00045600638,0.00001295984],"category_scores_gemma":[0.00020190614,0.00012754554,0.00017350199,0.00014983496,0.00047300154,0.000005039126,0.00024791312,0.0004407294,0.0000015981421],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008653017,0.00024409089,0.0009315828,0.000026939271,0.000059222086,0.000009145024,0.000022580038,0.0000075428493,0.99694896,0.0000037330826,0.00041864236,0.00046228914],"study_design_scores_gemma":[0.0014252468,0.0030196952,0.0026952706,0.000017720502,0.000026265174,0.00011989293,0.00023893864,0.000010864054,0.9704218,0.00012894046,0.021706082,0.00018927304],"about_ca_topic_score_codex":0.000010388075,"about_ca_topic_score_gemma":0.0000056905305,"teacher_disagreement_score":0.02652712,"about_ca_system_score_codex":0.000034858116,"about_ca_system_score_gemma":0.00026236585,"threshold_uncertainty_score":0.5201156},"labels":[],"label_agreement":null},{"id":"W1935865925","doi":"10.1111/j.1365-2958.2004.04303.x","title":"The role of H‐NS in silencing F transfer gene expression during entry into stationary phase","year":2004,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Biology; Derepression; Plasmid; Bacterial conjugation; Promoter; Molecular biology; Mutant; Repressor; Psychological repression; Gene; Escherichia coli; Regulation of gene expression; Beta-galactosidase; Gene expression; Cell biology; Genetics","score_opus":0.0021517203595157698,"score_gpt":0.2032299463545215,"score_spread":0.20107822599500572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1935865925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99476904,0.0034005737,0.001315112,0.00014894274,0.00009786097,0.00019020267,0.000029444767,0.000008217598,0.000040635725],"genre_scores_gemma":[0.9979457,0.0005151052,0.0012209828,0.000064457745,0.000038625505,0.000020426653,0.00016333416,0.000018784745,0.000012535093],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896145,0.000078024976,0.0003089157,0.00032813573,0.000035809677,0.0002876526],"domain_scores_gemma":[0.9995441,0.0000072479734,0.00005503421,0.00031436633,0.0000455546,0.0000337105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000106210675,0.00015236242,0.00015906534,0.00006435983,0.00008183147,0.0000072378443,0.00025496198,0.00031661347,0.0000061444543],"category_scores_gemma":[0.000024349072,0.00012409044,0.00007846892,0.00009409853,0.0001845013,0.0000021716949,0.00013017643,0.00012439169,0.0000027479068],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019992808,0.000111178866,0.00012771034,0.000009134895,0.000024202196,0.000010927778,0.00009516175,0.00016791964,0.9977628,0.00015183966,0.0000030733438,0.0013361102],"study_design_scores_gemma":[0.001624776,0.0002916609,0.00012950334,0.000016458414,0.000007080461,0.000047599537,0.00011002998,0.0000020757698,0.99446845,0.00052724767,0.0026360408,0.00013904755],"about_ca_topic_score_codex":0.0000346331,"about_ca_topic_score_gemma":0.000047499427,"teacher_disagreement_score":0.0032943338,"about_ca_system_score_codex":0.000024659977,"about_ca_system_score_gemma":0.00007104345,"threshold_uncertainty_score":0.5060261},"labels":[],"label_agreement":null},{"id":"W1939627804","doi":"10.1046/j.1365-2958.2002.02744.x","title":"Structure of the Lrp‐regulated <i>serA</i> promoter of <i>Escherichia coli</i> K‐12","year":2002,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; Concordia University","funders":"Concordia University","keywords":"Biology; Repressor; Escherichia coli; Transcription (linguistics); Promoter; Molecular biology; Gene; Catabolite repression; Regulatory sequence; Regulation of gene expression; Gene expression; Genetics","score_opus":0.003853647659663168,"score_gpt":0.17358821979746505,"score_spread":0.16973457213780188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1939627804","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99739367,0.0011396777,0.00008667353,0.00041360405,0.00028418572,0.00029685895,0.00015733157,0.000009415451,0.0002185604],"genre_scores_gemma":[0.99820876,0.00008541691,0.0007190589,0.0005742209,0.00004347996,0.0000037301745,0.000092911054,0.000028243801,0.00024417316],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987908,0.00013144851,0.00036602534,0.00036526882,0.000050464732,0.00029596398],"domain_scores_gemma":[0.9989088,0.000004398528,0.0002423722,0.00070343254,0.00010648345,0.000034466695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053906955,0.00021800926,0.00030095715,0.00003881422,0.000040343824,0.0000050605695,0.0005230355,0.0006101144,0.00009802708],"category_scores_gemma":[0.000027958471,0.00016127677,0.000181067,0.00016701246,0.0004566016,0.000001377312,0.00029426286,0.00015967083,0.0000028624765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038170612,0.00007127375,0.00027733934,0.000025014393,0.00010331514,0.000001518916,0.000023017103,0.000018372757,0.9980543,0.00007980218,0.0009091211,0.00039871194],"study_design_scores_gemma":[0.0005216295,0.00030599954,0.00036364477,0.0000123107575,0.000035013243,0.000045425273,0.0000045391866,0.000008963384,0.9538157,0.000059938076,0.04466113,0.00016572485],"about_ca_topic_score_codex":0.000012574671,"about_ca_topic_score_gemma":0.000024055926,"teacher_disagreement_score":0.044238664,"about_ca_system_score_codex":0.000006942587,"about_ca_system_score_gemma":0.000024954117,"threshold_uncertainty_score":0.6576676},"labels":[],"label_agreement":null},{"id":"W1939730235","doi":"10.1099/mic.0.000140","title":"Complex autoregulation of the post-transcriptional regulator RsmA in Pseudomonas aeruginosa","year":2015,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research","keywords":"Regulon; Pseudomonas aeruginosa; Biology; Transcriptional regulation; Translation (biology); Regulator; Cell biology; Regulation of gene expression; Gene; Post-transcriptional regulation; Translational regulation; Ribosomal binding site; RNA-binding protein; Ribosome; Function (biology); Genetics; RNA; Messenger RNA; Gene expression; Bacteria","score_opus":0.015435772101933311,"score_gpt":0.2220535834146809,"score_spread":0.2066178113127476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1939730235","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997708,0.00022892127,0.000050050054,0.001235784,0.0003879658,0.0001652628,0.00008183479,0.00000735702,0.00013479608],"genre_scores_gemma":[0.9983879,0.000008125822,0.00072451745,0.0002744501,0.000100611716,0.0000059652552,0.00031781968,0.000010014164,0.00017062295],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991718,0.000099251236,0.0002510575,0.00024656515,0.00003651591,0.00019479854],"domain_scores_gemma":[0.9994618,0.000004559038,0.000094001036,0.00029000553,0.00011737718,0.00003224225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015341271,0.00011710158,0.00015616187,0.00005050563,0.000025356052,0.000004347991,0.00026605092,0.00034698535,0.000021907217],"category_scores_gemma":[0.000037567414,0.000089159024,0.00007333819,0.00010587626,0.00028895118,0.0000015602147,0.0001337675,0.00008174269,0.0000054390994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000098138444,0.000046993853,0.007568315,0.000004621919,0.00001439604,4.1452017e-7,0.00003211108,0.000037342186,0.99022233,0.0007217366,0.0008590326,0.00039458505],"study_design_scores_gemma":[0.00087473105,0.0002626863,0.13725209,0.000006815477,0.00000790268,0.00007692013,0.00003327319,0.000019321154,0.7853723,0.00022066961,0.075736135,0.00013714335],"about_ca_topic_score_codex":0.00005094426,"about_ca_topic_score_gemma":0.0002607095,"teacher_disagreement_score":0.20484999,"about_ca_system_score_codex":0.000019782903,"about_ca_system_score_gemma":0.00010928786,"threshold_uncertainty_score":0.36357996},"labels":[],"label_agreement":null},{"id":"W1939739894","doi":"10.1111/mmi.12593","title":"<scp>TCA</scp> cycle activity in <scp><i>S</i></scp><i>taphylococcus aureus</i> is essential for iron‐regulated synthesis of staphyloferrin <scp>A</scp>, but not staphyloferrin <scp>B</scp>: the benefit of a second citrate synthase","year":2014,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Siderophore; Mutant; Biology; Biochemistry; Citric acid cycle; Biosynthesis; Virulence; Microbiology; Enzyme; Gene","score_opus":0.005067623516529781,"score_gpt":0.2066115518900772,"score_spread":0.20154392837354743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1939739894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896914,0.0015131446,0.001645981,0.00019572454,0.00064901746,0.0018368507,0.0037529261,0.00008076929,0.00063420756],"genre_scores_gemma":[0.99565804,0.00037827424,0.000974552,0.0007631676,0.00026772651,0.00032615385,0.0005845781,0.00023850313,0.0008089791],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9928832,0.000818256,0.0016547752,0.0021987713,0.00031707506,0.002127917],"domain_scores_gemma":[0.9936212,0.0017308327,0.0014295488,0.0023236508,0.00055677077,0.00033803942],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0012440628,0.0013479238,0.0018776116,0.000517547,0.00028446998,0.00010165986,0.002012153,0.0025804325,0.000016727921],"category_scores_gemma":[0.0026792448,0.0012480107,0.0010350959,0.0008044945,0.0014478912,0.000029100325,0.0011209578,0.0008707732,0.000020916561],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000821885,0.00073104736,0.00046004227,0.0003605312,0.00070435426,0.000021867621,0.00032692507,0.0003143187,0.992386,0.0003711738,0.0034681542,0.00077338726],"study_design_scores_gemma":[0.0024137814,0.0012862068,0.0024764913,0.00009127397,0.00028862534,0.00005766774,0.00051820464,0.00021681465,0.92811805,0.00045767988,0.06387511,0.00020010256],"about_ca_topic_score_codex":0.00027976558,"about_ca_topic_score_gemma":0.00067912234,"teacher_disagreement_score":0.06426797,"about_ca_system_score_codex":0.00008103368,"about_ca_system_score_gemma":0.00031828004,"threshold_uncertainty_score":0.99992716},"labels":[],"label_agreement":null},{"id":"W1941669181","doi":"10.1099/00221287-146-11-2803","title":"Involvement of the rml locus in core oligosaccharide and O polysaccharide assembly in Pseudomonas aeruginosa","year":2000,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; Toronto General Hospital; University of Guelph","funders":"","keywords":"Pseudomonas aeruginosa; Mutant; Serotype; Oligosaccharide; Microbiology; Lipid A; Lipopolysaccharide; Biology; Polysaccharide; Pseudomonadaceae; Shuttle vector; Chemistry; Antigen; Heptose; Bacteria; Gene; Biochemistry; Genetics; Vector (molecular biology); Immunology; Recombinant DNA","score_opus":0.008414121388987178,"score_gpt":0.2162699450298935,"score_spread":0.20785582364090632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1941669181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99821395,0.0008352286,0.0000030938766,0.00046438017,0.00011707754,0.0002172797,0.000041589676,0.000004317995,0.00010307242],"genre_scores_gemma":[0.99845123,0.00075045973,0.00013092822,0.00041935372,0.000037993195,0.000012860488,0.00003083124,0.000010756765,0.00015556802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893606,0.00006645692,0.00032307534,0.00035118466,0.000025549009,0.0002976812],"domain_scores_gemma":[0.99953747,0.000009279757,0.00007530934,0.00033179132,0.000019719306,0.000026407006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015889166,0.00015494056,0.00022388293,0.00007269062,0.00002502058,0.0000055445907,0.00028789276,0.00037635418,0.000050107104],"category_scores_gemma":[0.000017724125,0.00012004994,0.00004907268,0.000149923,0.00023964966,0.0000016956758,0.00020341405,0.00015115285,0.0000042837073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007372047,0.00006150118,0.016709274,0.000009260639,0.000012541824,0.000003091461,0.00004686476,0.000010570526,0.979094,0.00007171227,0.00012248082,0.0037849739],"study_design_scores_gemma":[0.0008134909,0.00019624055,0.021126648,0.00002236551,0.000006500321,0.000055058754,0.000039286922,0.000006739123,0.9670391,0.0001353551,0.010400451,0.00015874382],"about_ca_topic_score_codex":0.0003367118,"about_ca_topic_score_gemma":0.0020287435,"teacher_disagreement_score":0.012054888,"about_ca_system_score_codex":0.000015743406,"about_ca_system_score_gemma":0.00005341682,"threshold_uncertainty_score":0.48954946},"labels":[],"label_agreement":null},{"id":"W1961858939","doi":"10.1046/j.1365-2958.2003.03287.x","title":"Two different modes of transcription repression of the <i>Escherichia coli</i> acetate operon by IclR","year":2002,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; Institute for Catastrophic Loss Reduction","keywords":"Isocitrate lyase; Psychological repression; Operon; Biology; RNA polymerase; Transcription (linguistics); Repressor; Molecular biology; Malate synthase; Promoter; RNA; Transcription factor; Escherichia coli; Gene expression; Biochemistry; Gene; Enzyme; Glyoxylate cycle","score_opus":0.006707245706935931,"score_gpt":0.19896165153156992,"score_spread":0.192254405824634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1961858939","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949819,0.003253837,0.0006532334,0.00035040552,0.00017265718,0.00023739682,0.00010937242,0.000007168853,0.00023403768],"genre_scores_gemma":[0.9983711,0.0006532692,0.00030882773,0.00026261984,0.00002018966,0.000011175594,0.00009301094,0.000019666231,0.0002600994],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988624,0.00017460146,0.00033028724,0.00035324311,0.00004594208,0.00023351866],"domain_scores_gemma":[0.9991842,0.0000041726867,0.00018302465,0.0005356917,0.000061878476,0.00003104639],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007202721,0.00018742384,0.00026710072,0.000027861737,0.000040777184,0.000004750392,0.00038364963,0.0003345383,0.00004210872],"category_scores_gemma":[0.000016784245,0.00013214636,0.00016589048,0.00008878276,0.00031083004,0.0000016526794,0.0001749059,0.00012126495,0.0000023823586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006459946,0.0001315715,0.00013526661,0.000023502203,0.00005806003,4.958893e-7,0.00002346877,0.000043232714,0.99789345,0.00006718543,0.00088573544,0.0006734178],"study_design_scores_gemma":[0.0007580903,0.00031705672,0.000109999535,0.000020637248,0.000035732715,0.000011466545,0.00001228574,0.000055005414,0.9882005,0.000026737755,0.01031262,0.00013990795],"about_ca_topic_score_codex":0.000016775148,"about_ca_topic_score_gemma":0.000009960191,"teacher_disagreement_score":0.009693003,"about_ca_system_score_codex":0.000007740795,"about_ca_system_score_gemma":0.000008625555,"threshold_uncertainty_score":0.53887725},"labels":[],"label_agreement":null},{"id":"W1963056106","doi":"10.1111/mmi.12540","title":"A general protein <scp><i>O</i></scp>‐glycosylation system within the <scp><i>B</i></scp><i>urkholderia cepacia</i> complex is involved in motility and virulence","year":2014,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Glycomics Centre; University of British Columbia; University of Alberta","funders":"National Health and Medical Research Council; Medical Research Council; Directorate for Biological Sciences; University of Alberta","keywords":"Burkholderia cenocepacia; Biology; Virulence; Glycosylation; Microbiology; Burkholderia cepacia complex; N-linked glycosylation; Escherichia coli; Campylobacter jejuni; Glycan; Biochemistry; Glycoprotein; Biofilm; Burkholderia; Bacteria; Gene; Genetics","score_opus":0.007990617256992037,"score_gpt":0.20114833710080798,"score_spread":0.19315771984381594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963056106","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99522114,0.00089989713,0.0016888881,0.00025727495,0.00026262342,0.001046066,0.00011834196,0.000060814982,0.00044495994],"genre_scores_gemma":[0.99567556,0.000051884836,0.0019210131,0.0014799164,0.00016220968,0.00012248413,0.00032271008,0.000059110167,0.00020513228],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99671143,0.0006657958,0.0006626847,0.0011124911,0.000107826505,0.00073975394],"domain_scores_gemma":[0.9983599,0.00006819476,0.00036412224,0.00093772553,0.00014323372,0.00012682866],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007919891,0.00050688285,0.0005232891,0.00012358121,0.00018758076,0.000080058846,0.00062687113,0.00092879095,0.0000032081227],"category_scores_gemma":[0.00041087205,0.00042300083,0.0001439811,0.00028291732,0.00059825514,0.000006859168,0.00055308075,0.00039410146,0.000021230911],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013953358,0.00006631922,0.0018063392,0.00007625835,0.00006190933,0.00000765604,0.00015859872,0.000037813952,0.9961189,0.00075337244,0.0006870754,0.00021181104],"study_design_scores_gemma":[0.0010594522,0.00049065065,0.0032127947,0.00004261993,0.00003428855,0.000111724745,0.00020473478,0.0008249772,0.93857396,0.00024912762,0.055072237,0.00012343895],"about_ca_topic_score_codex":0.00013325625,"about_ca_topic_score_gemma":0.00025213222,"teacher_disagreement_score":0.05754494,"about_ca_system_score_codex":0.000045209046,"about_ca_system_score_gemma":0.00008763549,"threshold_uncertainty_score":0.9998222},"labels":[],"label_agreement":null},{"id":"W1963676019","doi":"10.1126/science.1128057","title":"Structure of TonB in Complex with FhuA, <i>E. coli</i> Outer Membrane Receptor","year":2006,"lang":"en","type":"article","venue":"Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":276,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Ferrichrome; Cell envelope; Colicin; Biophysics; Cytoplasm; Biology; Inner membrane; Escherichia coli; Biochemistry; Crystallography; Chemistry; Membrane","score_opus":0.005070117311201291,"score_gpt":0.2117192595924972,"score_spread":0.2066491422812959,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963676019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99888307,0.000043629505,0.000047870773,0.0003392357,0.000078975,0.00008896226,0.000043214986,0.0000042762726,0.0004707711],"genre_scores_gemma":[0.9963934,0.000011865222,0.0032222692,0.00010624077,0.000056842975,0.0000013723309,0.000044587945,0.0000048624747,0.00015857912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992561,0.00001009824,0.00013811546,0.0002572862,0.00014776517,0.00019068261],"domain_scores_gemma":[0.9995903,0.0000017695696,0.000058402464,0.0002258025,0.00009864269,0.000025084268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010383736,0.00007651521,0.00009816807,0.000056705634,0.00003470372,0.000013864702,0.0002769686,0.00009345635,0.000034452627],"category_scores_gemma":[0.000013474281,0.00005842411,0.000015747308,0.00028141463,0.0005271806,0.0000027997294,0.000084803265,0.000047367907,0.0000013838911],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003855189,0.000019245888,0.0013917381,0.000004577842,0.0000013157345,5.997533e-7,0.000006484371,0.00003828654,0.99777406,0.00017098551,0.00023035996,0.00032378282],"study_design_scores_gemma":[0.00025494778,0.00022409041,0.014912619,0.0000048240145,0.0000015472767,0.0000061346086,0.000012040223,0.000012635769,0.9569727,0.00007332331,0.027440194,0.00008493564],"about_ca_topic_score_codex":0.00005098478,"about_ca_topic_score_gemma":0.00038361325,"teacher_disagreement_score":0.040801365,"about_ca_system_score_codex":0.000007818002,"about_ca_system_score_gemma":0.000084681684,"threshold_uncertainty_score":0.2382466},"labels":[],"label_agreement":null},{"id":"W1963762739","doi":"10.1128/jb.183.21.6253-6264.2001","title":"Gonococcal MinD Affects Cell Division in <i>Neisseria gonorrhoeae</i> and <i>Escherichia coli</i> and Exhibits a Novel Self-Interaction","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Research Council Canada; Medical Research Council Canada; Medical Research Council; Directorate for Biological Sciences; University of Ottawa; University of Guelph; School of Medicine, Case Western Reserve University; Case Western Reserve University","keywords":"Biology; Operon; FtsZ; Neisseria gonorrhoeae; Escherichia coli; Cell division; Mutant; Microbiology; Cell; Genetics; Gene","score_opus":0.006755525285489943,"score_gpt":0.22538961661474907,"score_spread":0.21863409132925912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963762739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980069,0.00080821535,0.00015831258,0.00033042405,0.00043107948,0.00013380042,0.0000053549347,0.00000397093,0.00012197904],"genre_scores_gemma":[0.99535954,0.0024380188,0.0017191885,0.00020494321,0.00021682441,0.0000031671048,0.0000099407225,0.000017627863,0.00003075277],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989648,0.0000871396,0.00038190896,0.0002811165,0.00002535106,0.00025966758],"domain_scores_gemma":[0.9993457,0.000026918255,0.00030938108,0.00014410172,0.0000640671,0.00010981896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025942764,0.00019287538,0.00033323947,0.00012721225,0.00004075532,0.000034334826,0.00012743054,0.00042061202,0.00001154446],"category_scores_gemma":[0.000036667265,0.00016930867,0.000057849233,0.0001020269,0.00009021675,0.000013944692,0.00014693064,0.0002613486,0.0000016658277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042065824,0.00014744197,0.012648866,0.000015769076,0.000026292746,0.000006764428,0.000043210995,0.000005436416,0.98302543,0.0000049120417,0.000054936063,0.0036002821],"study_design_scores_gemma":[0.0055614803,0.0059885764,0.30198103,0.00009533963,0.00007723254,0.0024633796,0.0001752635,0.0001942983,0.46183085,0.000049059327,0.22099745,0.00058605865],"about_ca_topic_score_codex":0.000009893523,"about_ca_topic_score_gemma":0.000052496736,"teacher_disagreement_score":0.5211946,"about_ca_system_score_codex":0.000019072446,"about_ca_system_score_gemma":0.000057488087,"threshold_uncertainty_score":0.69042075},"labels":[],"label_agreement":null},{"id":"W1963822433","doi":"10.1103/physrevlett.102.158105","title":"Pulling Helices inside Bacteria: Imperfect Helices and Rings","year":2009,"lang":"en","type":"article","venue":"Physical Review Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of British Columbia","funders":"","keywords":"MreB; Helix (gastropod); Protein filament; Imperfect; Physics; Azimuth; Chemical physics; Mechanics; Materials science; Cytoskeleton; Chemistry; Optics; Cell; Biology","score_opus":0.008035579785549616,"score_gpt":0.25903309129343055,"score_spread":0.2509975115078809,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963822433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9789246,0.013214551,0.000031513227,0.007493568,0.00006616024,0.00017790163,0.000004886588,0.000020493882,0.00006634648],"genre_scores_gemma":[0.9485542,0.03246581,0.00031901605,0.01815016,0.00045231084,0.000010907271,0.000028208678,0.000012538408,0.0000068139925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990769,0.000042050597,0.00017483949,0.0003765347,0.00007760716,0.00025207017],"domain_scores_gemma":[0.9995433,0.000009672022,0.00008476087,0.00026456735,0.000023107857,0.0000746068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000988743,0.00018866263,0.0002788049,0.000021278744,0.00005517008,0.000035495996,0.0001680114,0.00004352787,0.000006096876],"category_scores_gemma":[0.00003613913,0.00015513094,0.000097688935,0.00008104781,0.00007593777,0.0000054673847,0.0000885862,0.00011047258,0.0000129632745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010783401,0.000027298553,0.00006717423,0.0001066006,0.000017887172,0.0000018648448,0.000008093054,9.639318e-7,0.98480624,0.00003694525,0.00043265327,0.014483512],"study_design_scores_gemma":[0.00039187886,0.00071437843,0.008197493,0.00054590526,0.00011047017,0.000039729275,0.000005249786,0.00004419636,0.8090919,0.00013956439,0.1801493,0.0005699103],"about_ca_topic_score_codex":0.000007828833,"about_ca_topic_score_gemma":0.0000027393125,"teacher_disagreement_score":0.17971665,"about_ca_system_score_codex":0.0000054290103,"about_ca_system_score_gemma":0.000009629771,"threshold_uncertainty_score":0.6326056},"labels":[],"label_agreement":null},{"id":"W1964508389","doi":"10.1093/nar/gkl627","title":"Genetic regulation of fluxes: iron homeostasis of Escherichia coli","year":2006,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Danmarks Grundforskningsfond; Canadian Institutes of Health Research; National Research Foundation","keywords":"Intracellular; Escherichia coli; Biology; Extracellular; Iron homeostasis; Redistribution (election); Bacteria; Biophysics; Biochemistry; Cell biology; Metabolism; Genetics; Gene","score_opus":0.017635928695593106,"score_gpt":0.2830791901129589,"score_spread":0.2654432614173658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964508389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997287,0.0007350602,0.00017529771,0.00012300392,0.00005904125,0.00021240952,0.00002960988,0.000007927595,0.0013706686],"genre_scores_gemma":[0.9943226,0.00026879658,0.0047280896,0.000008658615,0.00016354669,0.00001056015,0.000053520205,0.00002403606,0.00042020992],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986391,0.0001210036,0.00032592734,0.00029658855,0.00030559662,0.000311795],"domain_scores_gemma":[0.99902153,0.000015207623,0.000100894,0.00050410704,0.0003158573,0.000042416028],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034035766,0.00010988073,0.00018248806,0.0001417869,0.000059519814,0.000011555227,0.00031466602,0.00036443642,0.00009430104],"category_scores_gemma":[0.00006926443,0.000105724954,0.000071778704,0.00034243581,0.00044736688,0.0000021800672,0.00022635242,0.00013512617,0.0000096849535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106630956,0.00010965118,0.0031414388,0.000049542738,0.000015638969,5.0558697e-7,0.00001218047,0.00004115627,0.9887431,0.00043000528,0.0013043653,0.006045732],"study_design_scores_gemma":[0.00034256984,0.0006516031,0.1468657,0.000011590717,0.000007317082,0.0000019136005,0.000039197206,0.000056751094,0.84080946,0.0005941008,0.01052449,0.00009530242],"about_ca_topic_score_codex":0.00017969153,"about_ca_topic_score_gemma":0.00004164239,"teacher_disagreement_score":0.14793368,"about_ca_system_score_codex":0.000016174328,"about_ca_system_score_gemma":0.000089905894,"threshold_uncertainty_score":0.43113384},"labels":[],"label_agreement":null},{"id":"W1964736292","doi":"10.1021/bi036229j","title":"Inhibition of Protein Interactions with the β<sub>2</sub> Sliding Clamp of <i>Escherichia coli</i> DNA Polymerase III by Peptides from β<sub>2</sub>-Binding Proteins","year":2004,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Queensland University of Technology; Commonwealth Scientific and Industrial Research Organisation; Petroleum Technology Alliance Canada","keywords":"Escherichia coli; DNA clamp; Chemistry; DNA polymerase; DNA; Polymerase; Clamp; Biochemistry; Molecular biology; Biophysics; Biology; Polymerase chain reaction; Gene","score_opus":0.004882421424312221,"score_gpt":0.1941808255553342,"score_spread":0.18929840413102197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964736292","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99734044,0.00047190752,0.00069688394,0.00043367155,0.000066846645,0.00054659456,0.00032930498,0.000029151566,0.00008517864],"genre_scores_gemma":[0.998441,0.00012714135,0.00042526907,0.00007964308,0.00020507426,0.00012788683,0.00051874557,0.000046843783,0.000028429946],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984277,0.000041681433,0.0004460188,0.0005349691,0.00020786386,0.0003418001],"domain_scores_gemma":[0.9987176,0.000013768396,0.0004700606,0.00056187465,0.00014274739,0.00009395483],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012422005,0.00033013144,0.00030484213,0.000043675664,0.00014769418,0.0000330955,0.00027858376,0.0004370547,0.0000051149586],"category_scores_gemma":[0.000047034297,0.00027212294,0.0001420701,0.00024325024,0.0003233837,0.000010320803,0.00017980492,0.00028164827,0.0000027546423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028917534,0.00020983393,0.000040338564,0.00007043292,0.00012491732,0.0000028121062,0.00005946186,0.000005999086,0.99824685,0.00001567594,0.00019256989,0.000741951],"study_design_scores_gemma":[0.0011143658,0.0003223657,0.000046142835,0.00022975274,0.00005971231,0.000011358338,0.00026344828,0.0000026004896,0.997272,0.000041661322,0.0003143883,0.00032218106],"about_ca_topic_score_codex":0.000076360084,"about_ca_topic_score_gemma":0.000053648015,"teacher_disagreement_score":0.0011005055,"about_ca_system_score_codex":0.00005052213,"about_ca_system_score_gemma":0.0002144477,"threshold_uncertainty_score":0.9999731},"labels":[],"label_agreement":null},{"id":"W1965044238","doi":"10.1021/bi7018173","title":"Core Residue Replacements Cause Coiled-Coil Orientation Switching<i>in Vitro</i>and<i>in Vivo</i>:  Structure−Function Correlations for Osmosensory Transporter ProP","year":2007,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Antiparallel (mathematics); Coiled coil; Heptad repeat; Biophysics; Mutant; Chemistry; Transmembrane domain; Biochemistry; Crystallography; Peptide sequence; Biology; Amino acid; Physics","score_opus":0.01338121113736295,"score_gpt":0.25485230503906997,"score_spread":0.241471093901707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965044238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972016,0.00017703911,0.0016034888,0.00008628838,0.0002534928,0.00041963044,0.00014111468,0.000018131204,0.000099220124],"genre_scores_gemma":[0.99711615,0.000054501983,0.0013240044,0.00014793412,0.00020945085,0.00003322895,0.00063625735,0.000027953824,0.0004505068],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998579,0.000013409911,0.00041220873,0.0005567036,0.00010571587,0.00033294884],"domain_scores_gemma":[0.99938977,0.000017395072,0.00013943313,0.00031442463,0.00006922843,0.00006976696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023852567,0.00021065267,0.00017182187,0.00007549508,0.00007047232,0.000017485472,0.00010744096,0.00053914933,0.000012635986],"category_scores_gemma":[0.00006270914,0.00021857208,0.000052404575,0.00013493748,0.00007022981,0.000005552815,0.00003592037,0.00016656892,6.1101775e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015512841,0.00006573343,0.0074000186,0.000058704627,0.000023285793,0.000005482325,0.000042657393,0.000011101958,0.98965853,0.000015508776,0.00018425295,0.000983464],"study_design_scores_gemma":[0.0016426592,0.00014142157,0.008712779,0.000028435483,0.000028864584,0.000019981888,0.000099560486,0.00006736821,0.9868127,0.00012432656,0.0020724947,0.0002494119],"about_ca_topic_score_codex":0.000029672812,"about_ca_topic_score_gemma":0.00033726174,"teacher_disagreement_score":0.002845809,"about_ca_system_score_codex":0.000040792813,"about_ca_system_score_gemma":0.000071102135,"threshold_uncertainty_score":0.89131105},"labels":[],"label_agreement":null},{"id":"W1965902126","doi":"10.1074/jbc.m112.403386","title":"Crystal Structures of a CTXφ pIII Domain Unbound and in Complex with a Vibrio cholerae TolA Domain Reveal Novel Interaction Interfaces","year":2012,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"SLAC National Accelerator Laboratory; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Office of Science; Howard Hughes Medical Institute; Norges Forskningsråd; U.S. Department of Energy; Universitetet i Oslo; Michael Smith Health Research BC","keywords":"Vibrio cholerae; Cholera toxin; Periplasmic space; Colicin; Pilus; Filamentous bacteriophage; Biology; Prophage; Bacteriophage; Microbiology; Cell biology; Escherichia coli; Genetics; Gene; Bacteria","score_opus":0.019418269150082504,"score_gpt":0.25669125517169694,"score_spread":0.23727298602161445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965902126","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99869704,0.0006006625,0.00025915072,0.00015112058,0.00006420905,0.00006469168,0.000023344544,0.0000027929746,0.00013700119],"genre_scores_gemma":[0.9946971,0.000115777104,0.004819463,0.00005130895,0.00027295807,0.0000016571107,0.000022588956,0.0000082122515,0.00001092042],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990336,0.000037034697,0.0004303149,0.00017571328,0.00009168007,0.00023168801],"domain_scores_gemma":[0.99929994,0.00001713324,0.0003847979,0.0001309862,0.0000733961,0.00009376248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024492978,0.00016986321,0.0003163015,0.000036713285,0.000026627069,0.000018942124,0.00017865324,0.0003617044,0.000032710628],"category_scores_gemma":[0.000050950937,0.00011195364,0.00006309322,0.000075183445,0.00027818602,0.000008772155,0.00013722431,0.00026580037,1.4181883e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009835982,0.00013898773,0.0099765435,0.00003124947,0.000055000404,0.0000035436767,0.000046521654,0.0000047772596,0.98829806,0.000013132216,0.000048368467,0.0004002284],"study_design_scores_gemma":[0.0012462778,0.0007353078,0.04830107,0.000046198686,0.000011975974,0.0008703091,0.0003694202,0.0000016488325,0.9422778,0.0001528221,0.005816295,0.00017090086],"about_ca_topic_score_codex":0.0000054802426,"about_ca_topic_score_gemma":0.000007032688,"teacher_disagreement_score":0.046020277,"about_ca_system_score_codex":0.000022445913,"about_ca_system_score_gemma":0.000032811815,"threshold_uncertainty_score":0.4565337},"labels":[],"label_agreement":null},{"id":"W1966296812","doi":"10.1016/j.bpj.2013.11.2054","title":"Para Protein Pattern Formation Drives Bacterial Plasmid Segregation","year":2014,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Nucleoid; Plasmid; Biology; DNA; Circular bacterial chromosome; Escherichia coli; Cell biology; Bacterial conjugation; Chromosome segregation; Molecular biology; Chromosome; DNA replication; Genetics; Gene","score_opus":0.007652425172865278,"score_gpt":0.21822353660878238,"score_spread":0.2105711114359171,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966296812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9860621,0.000005473455,0.012802477,0.0006086206,0.0003027821,0.00011014193,0.000008344695,0.000013264596,0.00008677695],"genre_scores_gemma":[0.99726975,0.000024146118,0.0007499766,0.00011501727,0.0016876283,0.000008279292,0.000077856865,0.000014181577,0.000053148913],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99919486,0.000079354315,0.00021913557,0.00017557543,0.00011797506,0.00021311578],"domain_scores_gemma":[0.99952495,0.0000038455,0.000150235,0.0001652771,0.00006985304,0.000085837055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010882047,0.00013315796,0.00012341714,0.00003597933,0.00011104909,0.00008416362,0.0001720297,0.00020854507,0.00002654137],"category_scores_gemma":[0.000036492565,0.00010962717,0.00008985435,0.00004714909,0.00006964578,0.000009452683,0.000072462026,0.00014445999,0.00003635219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006123962,0.00004656153,0.000031387495,0.0000059784084,0.000014545653,8.5980906e-7,0.000010038436,0.000002793928,0.9724981,0.00012420135,0.0002543051,0.026949955],"study_design_scores_gemma":[0.00053905277,0.00063356315,0.0014241814,0.00001437724,0.0000092945265,0.000050343795,0.0000075754524,0.0003754409,0.9676787,0.0002511877,0.028858788,0.00015748627],"about_ca_topic_score_codex":0.0000020764546,"about_ca_topic_score_gemma":0.0000037980722,"teacher_disagreement_score":0.028604483,"about_ca_system_score_codex":0.000011426312,"about_ca_system_score_gemma":0.000022450224,"threshold_uncertainty_score":0.44704664},"labels":[],"label_agreement":null},{"id":"W1966532618","doi":"10.1007/s00239-010-9352-0","title":"Evolution of the RpoS Regulon: Origin of RpoS and the Conservation of RpoS-Dependent Regulation in Bacteria","year":2010,"lang":"en","type":"article","venue":"Journal of Molecular Evolution","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"rpoS; Regulon; Biology; Sigma factor; Genetics; Gene; Proteobacteria; Escherichia coli; Gene expression; Promoter","score_opus":0.004078442283434182,"score_gpt":0.20718285390474622,"score_spread":0.20310441162131204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966532618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995572,0.0006170481,0.0023968,0.0007511512,0.00037510903,0.00024869072,0.000009250255,0.0000013305605,0.000028661654],"genre_scores_gemma":[0.99875635,0.00011168628,0.0009989203,0.000018672541,0.000077543424,0.000002767084,0.000006388595,0.000009076506,0.000018617506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987125,0.000182157,0.00064409577,0.0001300453,0.0002206419,0.0001105732],"domain_scores_gemma":[0.99829054,0.0000151094855,0.0009872852,0.00032138693,0.00036159044,0.000024082223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075698947,0.00010780178,0.00023845621,0.00010483674,0.000030942945,0.000006617275,0.00022598323,0.00029664193,0.0000054353936],"category_scores_gemma":[0.00021317793,0.00007189444,0.00012492391,0.00017310106,0.00035787415,0.0000100160405,0.00009236077,0.00019606526,1.2035309e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004966751,0.00005757137,0.0061262464,0.000028533861,0.000037840604,4.5080273e-7,0.000030283294,0.00009586435,0.9888911,0.0036955003,0.00003140963,0.0005085095],"study_design_scores_gemma":[0.0015358259,0.0002655939,0.17281096,0.000054411877,0.000054398854,0.00006409169,0.000041699015,0.00027873684,0.8222604,0.0021716359,0.00039570555,0.000066541674],"about_ca_topic_score_codex":0.00011378425,"about_ca_topic_score_gemma":0.00017358604,"teacher_disagreement_score":0.1666847,"about_ca_system_score_codex":0.00003277353,"about_ca_system_score_gemma":0.00016681552,"threshold_uncertainty_score":0.29317704},"labels":[],"label_agreement":null},{"id":"W1966857950","doi":"10.1038/sj.emboj.7601918","title":"The structural basis of cyclic diguanylate signal transduction by PilZ domains","year":2007,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":224,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium","funders":"Brookhaven National Laboratory; National Institutes of Health; Yale University","keywords":"Biology; Signal transduction; Transduction (biophysics); Cell biology; Computational biology; Botany","score_opus":0.004902349127478185,"score_gpt":0.2278399549814921,"score_spread":0.2229376058540139,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966857950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954525,0.0012073492,0.0014282818,0.0012234969,0.00043335542,0.00007367676,0.000011416557,0.000004330041,0.00016557335],"genre_scores_gemma":[0.998189,0.0008891714,0.00013051216,0.000075341464,0.0005196754,8.4628493e-7,0.000007842515,0.000011685112,0.00017597088],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991438,0.00006428895,0.00028145983,0.00011486387,0.00012878192,0.00026683896],"domain_scores_gemma":[0.99949014,0.000018818197,0.00016635814,0.00020990641,0.00006236668,0.00005238503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005981167,0.00010864841,0.00009880321,0.00002234259,0.00033673982,0.000035894012,0.0003451233,0.00012948268,0.000040233168],"category_scores_gemma":[0.000017141481,0.000057717694,0.00010891946,0.00007675898,0.00025297774,0.0000025392374,0.000043782926,0.00022741998,0.0000014834987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016439447,0.000009849505,0.00014758395,0.0000014486013,0.000063440835,0.0000012258186,0.00003652054,0.000008560847,0.97565705,0.000086580694,0.00068566133,0.023137664],"study_design_scores_gemma":[0.00035571746,0.0003055091,0.002920315,0.000003985782,0.000028177728,0.00031144384,0.00012836096,0.000011978099,0.963802,0.0009517593,0.031089002,0.000091798196],"about_ca_topic_score_codex":0.0000073690835,"about_ca_topic_score_gemma":0.000029065204,"teacher_disagreement_score":0.030403342,"about_ca_system_score_codex":0.000010000968,"about_ca_system_score_gemma":0.000029491923,"threshold_uncertainty_score":0.25899646},"labels":[],"label_agreement":null},{"id":"W1967098720","doi":"10.1007/s10534-005-5420-0","title":"Characterization of TonB Interactions with the FepA Cork Domain and FecA N-terminal Signaling Domain","year":2006,"lang":"en","type":"article","venue":"BioMetals","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research","keywords":"Bacterial outer membrane; Periplasmic space; C-terminus; Cork; Biophysics; Inner membrane; Chemistry; Escherichia coli; Biochemistry; Biology; Cell biology; Membrane; Amino acid; Gene","score_opus":0.005479843940328553,"score_gpt":0.2159869290412266,"score_spread":0.21050708510089805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967098720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99653816,0.000094127936,0.0021262036,0.00080908,0.000083494415,0.00014972451,0.000050891616,0.0000073341666,0.00014097973],"genre_scores_gemma":[0.99772793,0.000024298452,0.0014041313,0.000054161977,0.00017412317,0.0000129103055,0.00019806514,0.000011553239,0.0003928114],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993936,0.0000401009,0.00016117984,0.00019329634,0.00008149417,0.00013037254],"domain_scores_gemma":[0.99958,0.000007808347,0.00013423452,0.00018858581,0.0000681721,0.00002119234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014404004,0.00010745325,0.00012191867,0.000062827625,0.000075966775,0.000029422894,0.00010360575,0.000105680294,0.000015384096],"category_scores_gemma":[0.0000054101147,0.000071049704,0.000036139198,0.00015251509,0.00018755894,0.0000033233405,0.000066499124,0.000045564586,0.0000015002205],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006572266,0.00003329117,0.00031716182,0.000007713572,0.000030641928,0.000001939292,0.000016138432,4.8501084e-7,0.9981635,0.0002951358,0.00005940864,0.001008864],"study_design_scores_gemma":[0.00026676795,0.0002747351,0.008062369,0.000010609233,0.000021834769,0.00006215252,0.00005191382,0.0000021287062,0.93405724,0.00018866982,0.056893457,0.00010813637],"about_ca_topic_score_codex":0.000022526117,"about_ca_topic_score_gemma":0.000041811378,"teacher_disagreement_score":0.06410627,"about_ca_system_score_codex":0.000004372413,"about_ca_system_score_gemma":0.000019002557,"threshold_uncertainty_score":0.2897323},"labels":[],"label_agreement":null},{"id":"W1967128212","doi":"10.1016/j.jmb.2005.12.039","title":"Phage Display Reveals Multiple Contact Sites between FhuA, an Outer Membrane Receptor of Escherichia coli, and TonB","year":2005,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Bacterial outer membrane; Escherichia coli; Escherichia coli Proteins; Phage display; Chemistry; Biophysics; Microbiology; Biology; Crystallography; Genetics; Biochemistry; Gene; Antibody","score_opus":0.009396973193555022,"score_gpt":0.2610965880881681,"score_spread":0.25169961489461307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967128212","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957629,0.0014592049,0.0014407118,0.0009156617,0.0001456932,0.00013820382,0.00009175444,0.0000048286083,0.00004107408],"genre_scores_gemma":[0.9880329,0.00044792038,0.010441742,0.0003929282,0.00048375665,0.0000024007725,0.00011826263,0.000024260686,0.000055847286],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998537,0.00019451145,0.0006098632,0.0002793003,0.00010772496,0.0002715963],"domain_scores_gemma":[0.9987752,0.00003006666,0.0004945572,0.0002989674,0.00025422638,0.0001470078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004616026,0.00021184172,0.0004867697,0.00009859506,0.000037947906,0.000016026836,0.000319333,0.00053447805,0.00003393638],"category_scores_gemma":[0.00020594176,0.00017362171,0.0001447971,0.00007570268,0.00017276504,0.000010247995,0.0001405947,0.00020820317,0.0000023490272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021980371,0.00008993081,0.008884475,0.000014734093,0.00018263215,0.000006705102,0.000028594966,0.0000051012785,0.98654646,0.00011833623,0.00019123348,0.0037119978],"study_design_scores_gemma":[0.0012494774,0.002327912,0.005694247,0.00001509735,0.000065704975,0.000052101997,0.000023711666,0.000010661435,0.9588379,0.00008532931,0.031444732,0.00019308747],"about_ca_topic_score_codex":0.0000097304255,"about_ca_topic_score_gemma":0.000018577783,"teacher_disagreement_score":0.031253498,"about_ca_system_score_codex":0.00001162241,"about_ca_system_score_gemma":0.00005452547,"threshold_uncertainty_score":0.7080088},"labels":[],"label_agreement":null},{"id":"W1967192516","doi":"10.1128/jb.00069-15","title":"Membrane Protein Complex ExbB <sub>4</sub> -ExbD <sub>1</sub> -TonB <sub>1</sub> from Escherichia coli Demonstrates Conformational Plasticity","year":2015,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Biology; Bacterial outer membrane; Chemiosmosis; Escherichia coli; Biophysics; Membrane; Crystallography; Biochemistry; Chemistry; ATP synthase","score_opus":0.017324707332594058,"score_gpt":0.22355222958174292,"score_spread":0.20622752224914886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967192516","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953969,0.00023818482,0.0013290376,0.0010324195,0.0010336662,0.0004702076,0.00033756517,0.00003780913,0.00012422584],"genre_scores_gemma":[0.99517626,0.00044276088,0.0017619726,0.0005548409,0.0013392259,0.000030471178,0.000620599,0.00006690762,0.0000069792873],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99617314,0.00039333288,0.0015496027,0.00060183887,0.0004508773,0.0008311922],"domain_scores_gemma":[0.99646527,0.00009062634,0.001396566,0.00045864057,0.001058927,0.00052995386],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007189229,0.00063415925,0.001045557,0.00024001524,0.00018746017,0.00012613357,0.0007629887,0.0013329189,0.00003441806],"category_scores_gemma":[0.0005405358,0.00057650177,0.00034339324,0.00023687289,0.0007027545,0.000050715447,0.0004073771,0.0008190455,0.00007657504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012923134,0.0002325427,0.0004873365,0.00003293521,0.00037671905,0.000045910136,0.000059061153,0.000106808315,0.992135,0.00009359563,0.0014675355,0.0036702799],"study_design_scores_gemma":[0.0026486532,0.0020655873,0.01491307,0.00006163727,0.00011827823,0.00035906248,0.0001131704,0.00021608219,0.9713911,0.00039717363,0.0071154274,0.0006008052],"about_ca_topic_score_codex":0.000018757402,"about_ca_topic_score_gemma":0.000101323945,"teacher_disagreement_score":0.02074391,"about_ca_system_score_codex":0.00010700815,"about_ca_system_score_gemma":0.0008382221,"threshold_uncertainty_score":0.9999636},"labels":[],"label_agreement":null},{"id":"W1967297852","doi":"10.1139/w06-085","title":"The expression of<i>nifB</i>gene from<i>Herbaspirillum seropedicae</i>is dependent upon the NifA and RpoN proteins","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Food and Agriculture; Fundação Araucária; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"rpoN; Biology; Escherichia coli; lac operon; Bacillus subtilis; Promoter; Sigma factor; Gene; Microbiology; Molecular biology; Gene expression; Bacteria; Genetics","score_opus":0.003965028708628136,"score_gpt":0.1758915116953981,"score_spread":0.17192648298676996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967297852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98750305,0.009460556,0.00009724258,0.0021715593,0.00040720135,0.00015091746,0.00014688383,0.0000014539295,0.00006115787],"genre_scores_gemma":[0.9980916,0.00062382565,0.0003577246,0.00032806542,0.00040783384,0.0000029839482,0.000033170192,0.000014237887,0.00014059355],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895906,0.00012708787,0.0003879925,0.00018796611,0.000040906372,0.00029697362],"domain_scores_gemma":[0.999119,0.000022198396,0.00031540045,0.00029704,0.00013225093,0.0001141461],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029375008,0.00014276512,0.00019054781,0.000048144233,0.00019213368,0.000026811367,0.0004175579,0.00033796494,0.000026086343],"category_scores_gemma":[0.000043177595,0.000082460014,0.000083218,0.000051598767,0.00040796833,0.0000026176897,0.00007794556,0.0001987639,0.000002082445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005521695,0.000008897255,0.0010814378,0.0000029525015,0.000033937165,0.000008757698,0.000022775397,0.000003259564,0.99407804,0.00002282484,0.0030647418,0.0016171383],"study_design_scores_gemma":[0.00030439513,0.00025990084,0.0011580796,0.000013696034,0.000019048275,0.00020814197,0.000038870465,5.049241e-7,0.75349283,0.00016345386,0.24426068,0.000080408005],"about_ca_topic_score_codex":0.0023440833,"about_ca_topic_score_gemma":0.023246288,"teacher_disagreement_score":0.24119595,"about_ca_system_score_codex":0.000017588693,"about_ca_system_score_gemma":0.00036543378,"threshold_uncertainty_score":0.99457693},"labels":[],"label_agreement":null},{"id":"W1967320582","doi":"10.1128/jb.00525-10","title":"The ABC Transporter HrtAB Confers Resistance to Hemin Toxicity and Is Regulated in a Hemin-Dependent Manner by the ChrAS Two-Component System in<i>Corynebacterium diphtheriae</i>","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Petroleum Technology Research Centre","keywords":"Hemin; Biology; Operon; Corynebacterium diphtheriae; Heme; Mutant; Gene; ATP-binding cassette transporter; Plasmid; Molecular biology; Microbiology; Biochemistry; Transporter; Enzyme","score_opus":0.0038843853531306833,"score_gpt":0.20874946852547122,"score_spread":0.20486508317234053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967320582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941014,0.00058418926,0.00001737313,0.0041640573,0.00073634315,0.0002623139,0.00004852323,0.0000040535956,0.00008176779],"genre_scores_gemma":[0.9985222,0.00039887897,0.00010227761,0.0005395927,0.00020258827,0.000016808577,0.000010919773,0.000022592301,0.00018413855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982769,0.00013170518,0.0007457329,0.0003341249,0.000116403266,0.00039511558],"domain_scores_gemma":[0.99896264,0.000039735387,0.00035065325,0.000428488,0.00010981043,0.00010867382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007618863,0.00023905968,0.00040462756,0.00007156902,0.00009040277,0.000049660237,0.000505066,0.000403921,0.000011303362],"category_scores_gemma":[0.00003968571,0.00014795166,0.00009111589,0.00010407698,0.00028982657,0.0000058885944,0.00011002012,0.00049961853,0.0000014646372],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008975446,0.000057866127,0.0019099865,0.000015101999,0.000045730965,0.000023851431,0.00013766486,0.0000017422403,0.9954574,0.00004721074,0.00051291037,0.00089298905],"study_design_scores_gemma":[0.0022354298,0.00053987524,0.046409123,0.00007656936,0.000029639124,0.00047504078,0.0003114561,0.000009179714,0.8111266,0.00004589824,0.13842583,0.000315387],"about_ca_topic_score_codex":0.0000488687,"about_ca_topic_score_gemma":0.0012845573,"teacher_disagreement_score":0.18433084,"about_ca_system_score_codex":0.00003732606,"about_ca_system_score_gemma":0.00007053857,"threshold_uncertainty_score":0.60332936},"labels":[],"label_agreement":null},{"id":"W1967691910","doi":"10.1016/j.sbi.2008.07.002","title":"Structural details of the glycosyltransferase step of peptidoglycan assembly","year":2008,"lang":"en","type":"review","venue":"Current Opinion in Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Peptidoglycan; Glycosyltransferase; Lipid II; Biochemistry; Enzyme; Cell wall; Bacterial cell structure; Monomer; Chemistry; Computational biology; Structural biology; Biology; Bacteria; Genetics","score_opus":0.046148929896904216,"score_gpt":0.3448530851522305,"score_spread":0.2987041552553263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967691910","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09442789,0.8983955,0.000008894566,0.000016088714,0.0058156895,0.00069500203,0.00061885436,0.0000070659707,0.000015046637],"genre_scores_gemma":[0.050514735,0.9479677,0.00011036449,0.000003888136,0.00046435272,0.000028372237,0.00087068736,0.00003273838,0.0000071791037],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99725133,0.00036699185,0.0011719961,0.00065305305,0.00012850176,0.0004281132],"domain_scores_gemma":[0.9982715,0.00003961259,0.0007190028,0.0007934755,0.00011466555,0.000061728824],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008867544,0.00054006604,0.0014030702,0.00017775553,0.000060186456,0.0000063415173,0.0010279579,0.001075527,0.00002045411],"category_scores_gemma":[0.00008923964,0.0003419965,0.0006569134,0.00035200955,0.00070107216,0.000003064617,0.00041332934,0.00050581904,0.0000013550986],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006685594,0.000023605146,0.00079789106,0.0040799133,0.00014588398,2.8947323e-7,0.000018801618,0.000002369843,0.012939185,0.0006752666,0.00020087478,0.98104906],"study_design_scores_gemma":[0.0006653564,0.00047697866,0.00073999364,0.0018397894,0.00007881205,0.00015285837,0.000008524931,0.000008376577,0.004729475,0.0000963436,0.9906525,0.00055100076],"about_ca_topic_score_codex":0.000035590605,"about_ca_topic_score_gemma":0.000026861515,"teacher_disagreement_score":0.99045163,"about_ca_system_score_codex":0.00003368986,"about_ca_system_score_gemma":0.00035510206,"threshold_uncertainty_score":0.9999032},"labels":[],"label_agreement":null},{"id":"W1967919303","doi":"10.1074/jbc.m109.052878","title":"Coordination of Polymerization, Chain Termination, and Export in Assembly of the Escherichia coli Lipopolysaccharide O9a Antigen in an ATP-binding Cassette Transporter-dependent Pathway","year":2009,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"ATP-binding cassette transporter; Biochemistry; Bacterial outer membrane; Escherichia coli; Periplasmic space; Mutant; Biology; Transport protein; Flippase; Cytoplasm; Membrane protein; Membrane; Cell biology; Transporter; Chemistry; Gene; Phospholipid","score_opus":0.011240227585495387,"score_gpt":0.2372181367982766,"score_spread":0.22597790921278121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967919303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992357,0.00022135495,0.000047632784,0.00032322502,0.000046515845,0.00008466805,0.000017288074,0.0000018301653,0.000021769922],"genre_scores_gemma":[0.9995176,0.0001918517,0.0001363007,0.000048069865,0.00006317517,0.0000013366738,0.000019490617,0.000004845246,0.000017339762],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895495,0.000047773454,0.00058781385,0.00016874447,0.00010676325,0.00013393846],"domain_scores_gemma":[0.999204,0.000009732571,0.0005040544,0.00014020328,0.00010087735,0.00004116662],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032644934,0.000115774994,0.00024990743,0.000046742494,0.000020048874,0.0000075340486,0.00022281818,0.00035132095,0.000007725222],"category_scores_gemma":[0.00008575196,0.000082588005,0.000061816885,0.00012730075,0.00009749825,0.000008092712,0.00003248928,0.00015139394,2.3194993e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000076088254,0.00014349201,0.06149318,0.000013348252,0.000008218808,0.000005866791,0.000042988748,0.0000043739433,0.9367921,0.00001031352,0.0000019190422,0.0014081501],"study_design_scores_gemma":[0.00039863598,0.00032350968,0.19618207,0.000029935773,0.000004395747,0.000023816072,0.00007264582,0.000014585895,0.80278707,0.000031212865,0.000057231307,0.00007490295],"about_ca_topic_score_codex":0.000005611323,"about_ca_topic_score_gemma":0.000014190843,"teacher_disagreement_score":0.13468888,"about_ca_system_score_codex":0.000015254666,"about_ca_system_score_gemma":0.000073579235,"threshold_uncertainty_score":0.3367841},"labels":[],"label_agreement":null},{"id":"W1968962968","doi":"10.1177/1087057114551334","title":"Streptomyces: A Screening Tool for Bacterial Cell Division Inhibitors","year":2014,"lang":"en","type":"article","venue":"SLAS DISCOVERY","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McMaster University","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; University of Missouri; Howard Hughes Medical Institute","keywords":"Streptomyces coelicolor; Bacillus subtilis; Streptomyces; Cell division; Biology; Microbiology; Cell; Bacteria; Genetics; Cell biology","score_opus":0.006830158508379379,"score_gpt":0.2166603290006543,"score_spread":0.20983017049227493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968962968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97331935,0.000072285584,0.025181783,0.00007783229,0.0007279801,0.00024832363,0.00008275389,0.000021634298,0.00026804098],"genre_scores_gemma":[0.9952444,0.00003888032,0.002464536,0.00011875075,0.0010364607,0.000032020474,0.0003784699,0.00003144628,0.00065503083],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989362,0.00003541696,0.00022163951,0.00042157044,0.000085681146,0.00029951523],"domain_scores_gemma":[0.9994411,0.000018629413,0.00009813309,0.0003573139,0.0000408878,0.000043924392],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001579891,0.00018047188,0.0001626782,0.00003959742,0.00009113584,0.000100430494,0.00020125735,0.00029508056,0.000014501417],"category_scores_gemma":[0.000077100674,0.00016051107,0.00014320861,0.000051351366,0.000070066046,0.000009000039,0.0002014155,0.00006619948,0.0000068431737],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013722216,0.000046983936,0.0015479851,0.000027909713,0.000018505438,2.3560395e-7,0.0000066631096,0.000012167559,0.9897371,0.00018809686,0.001405994,0.006871163],"study_design_scores_gemma":[0.0009585192,0.0007140811,0.0020801665,0.0000185891,0.000017263026,0.0000013782834,0.000018095838,0.00007367736,0.8625052,0.00017684502,0.13317305,0.00026315395],"about_ca_topic_score_codex":0.0000072434236,"about_ca_topic_score_gemma":0.000011989143,"teacher_disagreement_score":0.13176705,"about_ca_system_score_codex":0.000006386864,"about_ca_system_score_gemma":0.000035309193,"threshold_uncertainty_score":0.6545452},"labels":[],"label_agreement":null},{"id":"W1968982341","doi":"10.1074/jbc.m112.442814","title":"Metabolite Profiling to Characterize Disease-related Bacteria","year":2013,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Université de Lausanne; University of Exeter; Cystic Fibrosis Canada; Wellcome Trust","keywords":"Biology; Mutant; rpoN; Sigma factor; Gene; Biochemistry; Microbiology; Genetics; Gene expression; Promoter","score_opus":0.01381824668771065,"score_gpt":0.2275126252466804,"score_spread":0.21369437855896975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968982341","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978821,0.0004968785,0.00006065402,0.00094833045,0.00025486827,0.00015172224,0.000034687037,0.000012207555,0.00015850812],"genre_scores_gemma":[0.99600345,0.0003103332,0.0023962443,0.000340489,0.00058216177,0.000013176134,0.000091722206,0.000015217091,0.00024721897],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99873465,0.000041084866,0.0005365695,0.00027453396,0.00010780887,0.00030534915],"domain_scores_gemma":[0.99886763,0.000009513707,0.0002843213,0.0002658913,0.0002293619,0.00034326615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018761941,0.00020148167,0.0003007089,0.000029945431,0.000040876883,0.000046656492,0.00039698055,0.00039129832,0.00035388384],"category_scores_gemma":[0.00026413298,0.00014063028,0.00019677829,0.0001085716,0.000096058,0.0000057771695,0.000199127,0.0002136495,0.000033216395],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013158568,0.00007009237,0.0017211953,0.0000123939335,0.000060223472,0.000008191257,0.000003533672,0.0000019641861,0.99561846,0.0000090259255,0.00028189283,0.0020814675],"study_design_scores_gemma":[0.0003235552,0.0002622933,0.038591288,0.000015157919,0.000019251142,0.00007646444,0.000017763945,0.000003507814,0.93721694,0.00018809516,0.02308299,0.00020269272],"about_ca_topic_score_codex":0.0000015519104,"about_ca_topic_score_gemma":6.160083e-8,"teacher_disagreement_score":0.058401495,"about_ca_system_score_codex":0.000013222073,"about_ca_system_score_gemma":0.00006321816,"threshold_uncertainty_score":0.57347363},"labels":[],"label_agreement":null},{"id":"W1969180319","doi":"10.1007/s002030100288","title":"Characterization of glucose-repression-resistant mutants of Bacillus subtilis : identification of the glcR gene","year":2001,"lang":"en","type":"article","venue":"Archives of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; European Commission; Deutsche Forschungsgemeinschaft; Institut national de la recherche scientifique","keywords":"Catabolite repression; PEP group translocation; CCPA; Operon; Repressor; Bacillus subtilis; Mutant; Biology; Psychological repression; Biochemistry; Gene; Glucose transporter; lac operon; Genetics; Gene expression; Bacteria","score_opus":0.005947974083406038,"score_gpt":0.20490016222441282,"score_spread":0.1989521881410068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969180319","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984275,0.0003514008,0.0003062233,0.00008408912,0.00015229527,0.00017495608,0.0004381536,0.0000025894365,0.000062804436],"genre_scores_gemma":[0.9981477,0.0012119225,0.00025183533,0.000012542719,0.000025347586,0.0000034485279,0.00026066252,0.000009297949,0.00007719101],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893665,0.00010762338,0.0005598129,0.00022527495,0.00003640243,0.00013425786],"domain_scores_gemma":[0.99874085,0.000019087434,0.00063706434,0.00050392107,0.000082449136,0.000016598222],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000099855366,0.000105842286,0.00024613223,0.0000667007,0.000023804705,0.0000012342343,0.00037931837,0.00018298805,0.000013642687],"category_scores_gemma":[0.00006368127,0.00007971347,0.00011883449,0.00010616495,0.00054806296,0.0000018147712,0.00022936445,0.000049531533,4.0676548e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033305347,0.000103837185,0.0019332829,0.000039950068,0.0000577979,1.9308077e-7,0.000068997455,0.000005324228,0.99331313,0.000061668376,0.0000033996043,0.0040793368],"study_design_scores_gemma":[0.00031357136,0.00022197913,0.05009523,0.000026069143,0.00002209411,0.000012300049,0.000020976708,0.000008460481,0.947967,0.00008506468,0.0011607263,0.000066522196],"about_ca_topic_score_codex":0.000023359811,"about_ca_topic_score_gemma":0.000021103178,"teacher_disagreement_score":0.04816195,"about_ca_system_score_codex":0.0000022047022,"about_ca_system_score_gemma":0.000048654605,"threshold_uncertainty_score":0.3250621},"labels":[],"label_agreement":null},{"id":"W1969262464","doi":"10.1007/s12010-008-8241-0","title":"Serine Hydroxamate and the Transcriptome of High Cell Density Recombinant Escherichia coli MG1655","year":2008,"lang":"en","type":"article","venue":"Applied Biochemistry and Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Boehringer Ingelheim (Canada)","funders":"National Science Foundation","keywords":"Recombinant DNA; Escherichia coli; Serine; Biochemistry; Biology; Serine protease; Stringent response; Transcriptome; Gene; Gene expression; Enzyme; Protease","score_opus":0.003924044371876342,"score_gpt":0.1705825404514219,"score_spread":0.16665849607954555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969262464","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99650997,0.0010531469,0.000098545635,0.0016905273,0.00009752326,0.00026103406,0.000020942116,0.000041444684,0.00022689062],"genre_scores_gemma":[0.9926753,0.0058564073,0.0009181914,0.00018834313,0.000059678157,0.000026756796,0.00004852451,0.00001991188,0.00020688341],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870944,0.00002541558,0.00032778652,0.00054215285,0.00008004724,0.00031516637],"domain_scores_gemma":[0.9991854,0.000015044622,0.00016835214,0.00052601006,0.0000410527,0.000064140484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017411388,0.0002718125,0.00039550022,0.000041994368,0.00017444586,0.000009175819,0.0003009578,0.0009832758,0.000007659681],"category_scores_gemma":[0.000021534193,0.00020148499,0.00006333046,0.00016685866,0.0020501541,0.000001889972,0.0003369971,0.0002684205,0.0000016486537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004547647,0.00008024552,0.00009263111,0.00006387478,0.000051910716,0.0000044124986,0.00002208078,4.4736134e-7,0.9963883,0.0013818606,0.00012828707,0.0013311944],"study_design_scores_gemma":[0.0022393386,0.00022306974,0.0007238279,0.0000060477005,0.00003949288,0.0001523439,0.00007209571,0.000010157735,0.9917109,0.0006422976,0.0039334237,0.00024700095],"about_ca_topic_score_codex":0.000057274076,"about_ca_topic_score_gemma":0.0000069816265,"teacher_disagreement_score":0.0048032603,"about_ca_system_score_codex":0.000006048082,"about_ca_system_score_gemma":0.000042087424,"threshold_uncertainty_score":0.8216319},"labels":[],"label_agreement":null},{"id":"W1969418937","doi":"10.1016/j.ijbiomac.2012.11.007","title":"Probing the molecular determinant of the lipase-specific foldase Lif26 for the interaction with its cognate Lip26","year":2012,"lang":"en","type":"article","venue":"International Journal of Biological Macromolecules","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"National Science Foundation","keywords":"Foldase; Site-directed mutagenesis; Biochemistry; Chemistry; Lipase; Salt bridge; Homology modeling; Yeast; Mutagenesis; Cyanogen bromide; Stereochemistry; Biology; Peptide sequence; Enzyme; Mutant; GroEL","score_opus":0.024049246646191937,"score_gpt":0.2698385146517627,"score_spread":0.24578926800557074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969418937","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901509,0.0020807153,0.0037588777,0.0027232063,0.00095666177,0.0002673448,0.000032959237,0.0000029385164,0.000026359989],"genre_scores_gemma":[0.9980614,0.0005672458,0.0004744372,0.00035422397,0.00048670816,0.000018488074,0.00000855187,0.000011415457,0.000017515214],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903023,0.00009987239,0.00035483853,0.00013372563,0.00018280167,0.00019855313],"domain_scores_gemma":[0.99880445,0.000089279994,0.00047568735,0.00019533785,0.00039560086,0.00003965509],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037075637,0.00014020423,0.00014174943,0.000032716584,0.00008562321,0.00003854464,0.000806018,0.00014280502,0.000009985043],"category_scores_gemma":[0.00017329406,0.00005488119,0.00021374521,0.000067245724,0.00023304563,0.000007759968,0.00021700936,0.00016063765,9.272397e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000417807,0.00009729982,0.00079382735,0.00000366625,0.00016853523,0.000004581127,0.000034535627,0.0000457614,0.98997235,0.0011037383,0.000119989476,0.0072378865],"study_design_scores_gemma":[0.00047998485,0.0005581052,0.0029353385,0.000048680937,0.00003987885,0.00041237668,0.00012967014,0.00003763312,0.943133,0.000113028414,0.052012775,0.00009954635],"about_ca_topic_score_codex":0.0000029455991,"about_ca_topic_score_gemma":0.0000053206036,"teacher_disagreement_score":0.051892783,"about_ca_system_score_codex":0.000015814241,"about_ca_system_score_gemma":0.00003515089,"threshold_uncertainty_score":0.223799},"labels":[],"label_agreement":null},{"id":"W1969564519","doi":"10.1515/bc.2011.005","title":"Omp85 in eukaryotic systems: one protein family with distinct functions","year":2011,"lang":"en","type":"review","venue":"Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Deutsche Forschungsgemeinschaft; University of Calgary; Baden-Württemberg Stiftung","keywords":"Bacterial outer membrane; Organelle; Membrane protein; Cell biology; Biology; Bacteria; Membrane; Chemistry; Biochemistry; Genetics; Gene; Escherichia coli","score_opus":0.05453957676504361,"score_gpt":0.25067123870303903,"score_spread":0.19613166193799542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969564519","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02410209,0.97239274,0.000057632893,0.0000071711943,0.00011546565,0.0008969146,0.00020188442,0.000054736964,0.0021713432],"genre_scores_gemma":[0.017047454,0.9784288,0.00020645301,0.000012844436,0.0005400239,0.0006106073,0.0016498285,0.00006308751,0.0014409372],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.997646,0.000113928174,0.00061933545,0.0010103522,0.00009400425,0.0005163978],"domain_scores_gemma":[0.9987408,0.000015004606,0.00031525383,0.00073433144,0.00006309603,0.00013153076],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00016862458,0.0006016392,0.0011728323,0.000046045305,0.00005920942,0.0000349655,0.00057923066,0.0020991578,0.00006182043],"category_scores_gemma":[0.0000824938,0.0004035365,0.00024171725,0.00024078657,0.00032497826,0.0000015383864,0.00033182462,0.0005461806,0.000047064725],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069056015,0.0023661717,0.00063706224,0.031105766,0.0014328024,0.00020507623,0.000009921944,0.0000025190689,0.48941335,0.00022788765,0.0010469209,0.47286198],"study_design_scores_gemma":[0.00029781973,0.00051008887,0.0001228499,0.0022973972,0.00012952296,0.000091499984,0.000013760726,4.2971436e-7,0.0023062497,0.000009832795,0.9934949,0.00072564953],"about_ca_topic_score_codex":0.000028256716,"about_ca_topic_score_gemma":0.00000788198,"teacher_disagreement_score":0.992448,"about_ca_system_score_codex":0.00005433676,"about_ca_system_score_gemma":0.00022651136,"threshold_uncertainty_score":0.99984163},"labels":[],"label_agreement":null},{"id":"W1969798798","doi":"10.1371/journal.pone.0056321","title":"Generation of an Artificial Double Promoter for Protein Expression in Bacillus subtilis through a Promoter Trap System","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Promoter; Bacillus subtilis; Biology; Plasmid; Bacillus licheniformis; Luciferase; Reporter gene; Molecular biology; Escherichia coli; Gene; Recombinant DNA; Expression vector; DNA; Gene expression; Genetics; Bacteria; Transfection","score_opus":0.06296920785098575,"score_gpt":0.24518458012804134,"score_spread":0.1822153722770556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969798798","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99704844,0.000058451835,0.0004826461,0.00017054549,0.000045600973,0.0021041937,0.000026822741,0.000016296415,0.000046999157],"genre_scores_gemma":[0.9841657,0.0000062185086,0.014549339,0.000015784724,0.000273725,0.0006776628,0.00018904948,0.000022337517,0.000100168596],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898785,0.000041171243,0.00031101782,0.00034247118,0.00010451642,0.00021296409],"domain_scores_gemma":[0.9994027,0.0000013628778,0.00010668138,0.00032240173,0.00013212235,0.00003472196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000111356,0.00013159518,0.00020377633,0.00003995269,0.000035505363,0.000026495098,0.00014019717,0.00034428734,0.000019356428],"category_scores_gemma":[0.000014017994,0.000114073446,0.000043260774,0.00006120258,0.000047044323,0.000011528489,0.00005151994,0.000061886756,0.000004490404],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017082208,0.00071116874,0.000021097927,0.00014975904,0.000025251271,4.533613e-7,0.000080722566,0.0000017881464,0.99771285,0.00007949963,0.000016499567,0.0010300993],"study_design_scores_gemma":[0.0007147875,0.0009893387,0.00007166844,0.00008735492,0.000015315678,0.0000015123247,0.00004080911,0.0007373733,0.99695885,0.000101754136,0.00013978043,0.00014147299],"about_ca_topic_score_codex":0.000051445368,"about_ca_topic_score_gemma":0.00008782453,"teacher_disagreement_score":0.014066693,"about_ca_system_score_codex":0.000013731913,"about_ca_system_score_gemma":0.000033593315,"threshold_uncertainty_score":0.465178},"labels":[],"label_agreement":null},{"id":"W1969833143","doi":"10.1371/journal.ppat.1002261","title":"A Novel Metal Transporter Mediating Manganese Export (MntX) Regulates the Mn to Fe Intracellular Ratio and Neisseria meningitidis Virulence","year":2011,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Agence Nationale de la Recherche","keywords":"Neisseria meningitidis; Microbiology; Virulence; Manganese; Intracellular; Biology; Heterologous expression; Neisseria; Transporter; Heterologous; Virulence factor; Gene; Bacteria; Chemistry; Biochemistry; Genetics; Recombinant DNA","score_opus":0.01868235846810404,"score_gpt":0.20243025041470555,"score_spread":0.18374789194660152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969833143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772376,0.0003473651,0.0010887949,0.00023354423,0.00011586213,0.00029156302,0.00010307077,0.000023600416,0.00007246091],"genre_scores_gemma":[0.99335384,0.00012360356,0.0058602258,0.00019732285,0.00017755736,0.000053577074,0.00009731461,0.00003099877,0.00010555121],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988884,0.000030216162,0.00026140834,0.00042882343,0.00009285301,0.00029830905],"domain_scores_gemma":[0.99933356,0.0000079471965,0.0000890283,0.0004044945,0.000059498117,0.000105470855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018129953,0.00020661841,0.00018349887,0.000038130984,0.00011791359,0.00002539989,0.00023997705,0.00022111359,0.00003555183],"category_scores_gemma":[0.0000501563,0.00015534343,0.00006796556,0.00010001755,0.0001183758,0.0000051161487,0.00011621131,0.00010133825,0.0000067186447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049046055,0.000063960404,0.00059479993,0.00001111561,0.0000703424,0.000009946001,0.00061805634,0.000001280317,0.99751854,0.00006567727,0.000016582302,0.0009806802],"study_design_scores_gemma":[0.00020675767,0.00025584613,0.005243856,0.000010190476,0.00007661565,0.000045819077,0.00021100101,0.00007326343,0.9924387,0.0000386378,0.0011730354,0.0002263266],"about_ca_topic_score_codex":0.000014652679,"about_ca_topic_score_gemma":0.000035491634,"teacher_disagreement_score":0.0050798627,"about_ca_system_score_codex":0.0000049358578,"about_ca_system_score_gemma":0.000028717604,"threshold_uncertainty_score":0.63347214},"labels":[],"label_agreement":null},{"id":"W1969917015","doi":"10.1128/jb.00827-13","title":"Salinity-Dependent Impacts of ProQ, Prc, and Spr Deficiencies on Escherichia coli Cell Structure","year":2014,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Nucleoid; MreB; Biology; Periplasmic space; Peptidoglycan; Escherichia coli; Bacteria; Biochemistry; Bacterial cell structure; Lysin; Betaine; Microbiology; Cell wall; Bacteriophage; Genetics; Gene","score_opus":0.00620058149346957,"score_gpt":0.21866673536226822,"score_spread":0.21246615386879864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969917015","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99873126,0.000307688,0.00010767219,0.00023221178,0.00038498803,0.00009011963,0.000020644893,0.0000029407322,0.00012246586],"genre_scores_gemma":[0.99806046,0.00033545823,0.0010667698,0.00022646452,0.0002613563,7.525057e-7,0.000008059575,0.000014220291,0.000026453316],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989341,0.00013622535,0.0004310237,0.00018939564,0.00009261645,0.00021664522],"domain_scores_gemma":[0.9989667,0.00002679991,0.00054238853,0.00021871622,0.0001564269,0.00008896357],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030323523,0.00016316847,0.00035574645,0.00008916307,0.000039144135,0.000014188445,0.00022631856,0.00040287373,0.000020733292],"category_scores_gemma":[0.00015737758,0.00012201199,0.00007676186,0.000053627857,0.0002072319,0.0000036908377,0.00011784736,0.00022813803,0.0000011707916],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003218043,0.00005736365,0.0031255481,0.000031037926,0.000038313898,0.0000027934848,0.000029468283,0.000011887384,0.99518794,0.00008548786,0.0000878606,0.0010205145],"study_design_scores_gemma":[0.00084036094,0.005225528,0.052786283,0.000016096954,0.00003673256,0.00015973211,0.000031247153,0.000007038293,0.9320111,0.00024384561,0.008497413,0.00014459237],"about_ca_topic_score_codex":0.000007126475,"about_ca_topic_score_gemma":0.000018523677,"teacher_disagreement_score":0.06317679,"about_ca_system_score_codex":0.000009653003,"about_ca_system_score_gemma":0.00009375017,"threshold_uncertainty_score":0.49755046},"labels":[],"label_agreement":null},{"id":"W1970162878","doi":"10.1186/1471-2180-11-199","title":"Mutation of L-2,3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Siderophore; Biology; Biochemistry; Biosynthesis; Amino acid; Enzyme; Mutant; Operon; ATP synthase; Staphylococcus aureus; Gene; Bacteria; Genetics","score_opus":0.016178842249058707,"score_gpt":0.21732738776989022,"score_spread":0.2011485455208315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970162878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99675995,0.0018904059,0.0004576429,0.000020522473,0.00023926763,0.00028341945,0.00013296327,0.000017095535,0.0001987562],"genre_scores_gemma":[0.99561954,0.0002785752,0.003746053,0.000040716517,0.000073445706,0.000056094144,0.00010607848,0.000024927711,0.00005459696],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984655,0.0001511888,0.0004564905,0.00050465326,0.000034304518,0.0003879008],"domain_scores_gemma":[0.99914354,0.00002229738,0.00020160031,0.0004971173,0.00008523356,0.000050204126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020118123,0.00023531927,0.00032948965,0.00019420958,0.00003421304,0.0000051060756,0.0003577695,0.00061827607,0.00013558846],"category_scores_gemma":[0.00010879606,0.00021969095,0.00011673559,0.00015492132,0.00028504914,0.000002730381,0.0001924633,0.00011544091,0.000012498488],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024598924,0.00017690177,0.006864349,0.000034554003,0.00004544918,0.000007730087,0.00005202467,0.0000057138727,0.9892328,0.00007447263,0.000067038,0.0031929752],"study_design_scores_gemma":[0.00047006266,0.0004910215,0.007156163,0.000016982689,0.00002281477,0.000027431914,0.000096485826,0.000006931968,0.98939663,0.000081400955,0.0019870095,0.00024704594],"about_ca_topic_score_codex":0.00013180388,"about_ca_topic_score_gemma":0.00092275086,"teacher_disagreement_score":0.00328841,"about_ca_system_score_codex":0.000017645252,"about_ca_system_score_gemma":0.00012497386,"threshold_uncertainty_score":0.89587367},"labels":[],"label_agreement":null},{"id":"W1970200721","doi":"10.1111/j.1574-6968.2000.tb08889.x","title":"Tn<i>917-lac</i>mutagenesis of<i>Streptococcus mutans</i>to identify environmentally regulated genes","year":2000,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Dental and Craniofacial Research; Medical Research Council; National Institutes of Health; National Institute of General Medical Sciences; Medical Research Council Canada","keywords":"Transposon mutagenesis; Mutagenesis; Biology; lac operon; Transposable element; Mutant; Escherichia coli; Plasmid; Molecular biology; Streptococcus mutans; Gene; Operon; Strain (injury); Biochemistry; Bacteria; Genetics","score_opus":0.004491617929106581,"score_gpt":0.21031822247464535,"score_spread":0.20582660454553878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970200721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99643713,0.0005249113,0.00013773073,0.0017743058,0.00034135944,0.00044193957,0.00021753565,0.000035164732,0.00008994176],"genre_scores_gemma":[0.99383163,0.0003917209,0.0011462136,0.0030577802,0.00022383813,0.00003912876,0.0006040984,0.000051625502,0.00065397064],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980464,0.00011619907,0.00047987027,0.0007598723,0.000059922368,0.00053776044],"domain_scores_gemma":[0.99898696,0.000009738455,0.00013826281,0.0007247801,0.000033733297,0.00010655159],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001436317,0.00034402244,0.00036541335,0.00010745211,0.00009115263,0.000017633678,0.0005482031,0.0005559636,0.0004960476],"category_scores_gemma":[0.000012256835,0.00034017916,0.0001690434,0.00020171047,0.00041593498,0.0000038049168,0.00015958672,0.00012642394,0.00019475482],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015591564,0.00007208148,0.0017479841,0.0000090317435,0.00014668885,0.0000114719,0.00002665933,0.000165289,0.9840313,0.0000026111722,0.004211197,0.009419755],"study_design_scores_gemma":[0.00048978516,0.00028411267,0.0068852585,0.000010399378,0.00003558638,0.0000706047,0.000012237886,0.0000011127912,0.82841676,0.0000037944967,0.163467,0.0003233459],"about_ca_topic_score_codex":0.00004187023,"about_ca_topic_score_gemma":0.000026244303,"teacher_disagreement_score":0.1592558,"about_ca_system_score_codex":0.000023801576,"about_ca_system_score_gemma":0.000030126224,"threshold_uncertainty_score":0.99990505},"labels":[],"label_agreement":null},{"id":"W1970237882","doi":"10.1016/j.mib.2014.10.005","title":"Integrated circuits: how transcriptional silencing and counter-silencing facilitate bacterial evolution","year":2014,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Gene silencing; Biology; Genetics; RNA silencing; Gene; Cell biology; Regulation of gene expression; Computational biology; RNA interference; RNA","score_opus":0.050658306466510865,"score_gpt":0.2960808579024776,"score_spread":0.24542255143596675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970237882","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009528614,0.979173,0.001294527,0.000041315674,0.00830704,0.0006297482,0.0009932824,0.000025784466,0.000006672575],"genre_scores_gemma":[0.0040425155,0.98720497,0.0000832516,0.000009524753,0.0010085297,0.00009406503,0.0074807634,0.000044257005,0.000032139138],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972496,0.0004444028,0.0007150949,0.0010158132,0.00005278694,0.00052227813],"domain_scores_gemma":[0.9990723,0.000034294426,0.00034045917,0.0003774231,0.00009819208,0.0000773453],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00038450607,0.0005890288,0.0011617972,0.0002992256,0.00007932486,0.000053995394,0.0003753457,0.0013354099,0.000027025879],"category_scores_gemma":[0.000092247166,0.0005245107,0.00025719494,0.00018267598,0.0003250061,0.0000064318197,0.00019703797,0.00057359505,0.0000151259255],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028282684,0.0000619889,0.000017329008,0.0053798244,0.00008586046,3.9646872e-7,0.000033483055,6.7159056e-7,0.54961824,0.00012348474,0.0011683732,0.44348207],"study_design_scores_gemma":[0.0005355666,0.0002885823,0.00001859857,0.0034494067,0.000058365953,0.00014708201,0.00002682342,0.0000049361493,0.00051046145,0.000021539452,0.9944055,0.0005331018],"about_ca_topic_score_codex":0.000015890604,"about_ca_topic_score_gemma":0.000025891071,"teacher_disagreement_score":0.99323714,"about_ca_system_score_codex":0.00013701715,"about_ca_system_score_gemma":0.0003116805,"threshold_uncertainty_score":0.9999611},"labels":[],"label_agreement":null},{"id":"W1970415380","doi":"10.1080/09687680701416570","title":"Structure and function of the bacterial Sec translocon (Review)","year":2007,"lang":"en","type":"review","venue":"Molecular Membrane Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Translocon; Endoplasmic reticulum; Archaea; ATP hydrolysis; Cell biology; Biophysics; ATPase; Transport protein; Membrane protein; Chemistry; Membrane; Biochemistry; Biology; Enzyme; Gene","score_opus":0.013037343530242253,"score_gpt":0.26893650533353747,"score_spread":0.2558991618032952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970415380","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008573627,0.98910296,0.00009187012,0.000043935506,0.00093563827,0.0009063611,0.00026417983,0.000010533213,0.00007089491],"genre_scores_gemma":[0.0024170093,0.99595445,0.000118666096,0.00027863844,0.0002716675,0.00002394252,0.00083780236,0.00005430255,0.000043535874],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979648,0.00031811267,0.0006440631,0.0006467084,0.000088208886,0.00033810313],"domain_scores_gemma":[0.9986639,0.000015735213,0.00041799093,0.0007681022,0.00007040836,0.000063889245],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00022190346,0.00047797704,0.0011556994,0.00008615728,0.000050504506,0.000007237456,0.00049130723,0.0016427152,0.00006643989],"category_scores_gemma":[0.00005780852,0.00031159804,0.0004638294,0.00020560593,0.00038086847,0.0000011666721,0.0002753447,0.00034023868,0.000001983184],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025877462,0.000013680431,0.0000014953115,0.0051220628,0.00018194386,0.0000013676548,0.0000010896619,6.228662e-8,0.52679867,0.00013156353,0.00005793032,0.46766424],"study_design_scores_gemma":[0.00024733547,0.00037337202,0.0000074189707,0.0014084398,0.0006121814,0.00008753581,7.498862e-7,6.7239284e-8,0.10788062,0.000032155585,0.8890605,0.0002896339],"about_ca_topic_score_codex":0.000007401302,"about_ca_topic_score_gemma":0.000016289852,"teacher_disagreement_score":0.88900256,"about_ca_system_score_codex":0.000010744384,"about_ca_system_score_gemma":0.0001637164,"threshold_uncertainty_score":0.9999336},"labels":[],"label_agreement":null},{"id":"W1970583068","doi":"10.1007/s00438-001-0597-6","title":"Isolation and characterization of novel F-plasmid sopB mutants defective in gene silencing","year":2002,"lang":"en","type":"article","venue":"Molecular Genetics and Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saint Paul University","funders":"","keywords":"Biology; Plasmid; Mutant; Green fluorescent protein; Gene silencing; Molecular biology; Gene; Transfection; Cell biology; Fusion protein; Fusion gene; Genetics; Recombinant DNA","score_opus":0.0078006195768294566,"score_gpt":0.1939113129851137,"score_spread":0.18611069340828423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970583068","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98995036,0.001503821,0.008118423,0.000071370756,0.000075395255,0.00019105866,0.00004902247,0.000004234872,0.000036335336],"genre_scores_gemma":[0.99243766,0.0035228278,0.0037990413,0.000093923656,0.000043397842,0.0000063269786,0.00005884778,0.00002317639,0.000014795739],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991346,0.000022695973,0.00025485424,0.00034021644,0.00006124384,0.0001863994],"domain_scores_gemma":[0.99958414,0.0000038829153,0.00011242889,0.00019670113,0.000052213054,0.0000506602],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007713848,0.0001540433,0.00016730523,0.00008828715,0.00003741232,0.000026161806,0.00008108323,0.00025285,0.0000026814357],"category_scores_gemma":[0.000014664209,0.00017082437,0.000030754378,0.00009080391,0.00009210797,0.00000309772,0.00013513408,0.00006981287,4.2034594e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020861178,0.000053339892,0.0017965563,0.00001328434,0.00002156022,0.0000017868335,0.00009718814,0.00008333098,0.9925097,0.000058184043,7.3214625e-7,0.005343482],"study_design_scores_gemma":[0.0007008911,0.00028024206,0.014875984,0.000009025554,0.000018511406,0.000026658076,0.000025483834,0.0067735594,0.97655576,0.000078093675,0.00045934104,0.00019642478],"about_ca_topic_score_codex":0.0000089565765,"about_ca_topic_score_gemma":0.000016084798,"teacher_disagreement_score":0.015953908,"about_ca_system_score_codex":0.000011068211,"about_ca_system_score_gemma":0.000014793669,"threshold_uncertainty_score":0.69660157},"labels":[],"label_agreement":null},{"id":"W1970910896","doi":"10.1016/j.vetimm.2003.10.011","title":"Construction and application of a bovine immune-endocrine cDNA microarray","year":2004,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; University of Guelph","keywords":"Biology; Complementary DNA; Molecular biology; Housekeeping gene; Gene; Immune system; Microarray; Gene expression; Genetics","score_opus":0.004939915373585697,"score_gpt":0.22037740499204994,"score_spread":0.21543748961846423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970910896","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871589,0.0099437,0.0019022506,0.0004159405,0.00027157072,0.00019448648,0.00002049869,0.000021062642,0.00007158353],"genre_scores_gemma":[0.9901882,0.004817222,0.0047231563,0.000059661787,0.000044736695,0.000031086685,0.00008998179,0.000018033099,0.000027933329],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888635,0.00007826701,0.00034456738,0.00040567355,0.000030616702,0.00025450348],"domain_scores_gemma":[0.9993278,0.000008232137,0.00017156679,0.00040608272,0.00005943756,0.000026901098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012491364,0.00019649918,0.00029255904,0.00011152298,0.000110434725,0.0000075748894,0.00015560008,0.00038658944,0.000005721842],"category_scores_gemma":[0.000031095664,0.0001967143,0.000045493543,0.00008279103,0.0011510156,0.000006838451,0.00032973167,0.00016021678,0.000003309097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062551966,0.00006423024,0.00083944644,0.000022299811,0.00006169022,0.000010464837,0.000044514563,0.0000011220613,0.9732371,0.0014213268,0.0000015833606,0.023670675],"study_design_scores_gemma":[0.0022724848,0.007117156,0.045076687,0.000017456863,0.000038079448,0.008639485,0.00017204203,0.000002386051,0.9215314,0.0010640672,0.013776065,0.00029271218],"about_ca_topic_score_codex":0.000046080982,"about_ca_topic_score_gemma":0.0000041788912,"teacher_disagreement_score":0.051705748,"about_ca_system_score_codex":0.00000887624,"about_ca_system_score_gemma":0.00003458428,"threshold_uncertainty_score":0.80217767},"labels":[],"label_agreement":null},{"id":"W1971206474","doi":"10.1111/j.1574-6968.2008.01445.x","title":"The GacSâGacA two-component regulatory system of<i>Pseudomonas fluorescens</i>: a bacterial two-hybrid analysis","year":2009,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Pseudomonas fluorescens; Biology; Two-component regulatory system; Kinase; Regulator; Genetics; Gene; Bacteria; Mutant","score_opus":0.003613508929917262,"score_gpt":0.1967027395208841,"score_spread":0.19308923059096683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971206474","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960148,0.0005032336,0.0003767636,0.0017065452,0.0008861933,0.00027558504,0.0001273312,0.000039942814,0.000069655995],"genre_scores_gemma":[0.99727887,0.00007884845,0.0005632746,0.0008459778,0.00054781977,0.000011662912,0.00060563214,0.000021739761,0.00004620476],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979181,0.00024229406,0.0005747195,0.00062065135,0.000072568786,0.0005716161],"domain_scores_gemma":[0.9985376,0.000026035455,0.00033152365,0.0009424423,0.00008445219,0.000077927296],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003733249,0.00032984014,0.00049365114,0.00014742653,0.00020344497,0.00003581927,0.00064572296,0.00026579786,0.000010568017],"category_scores_gemma":[0.000019869643,0.00025084423,0.00038926693,0.00023963717,0.0005021839,0.0000029931932,0.00017656795,0.00019517323,0.000013265008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003118601,0.000042235028,0.00032818175,0.0000063354537,0.00059265847,0.000010493574,0.000012132847,0.00009214661,0.99453205,0.00018926676,0.0027277833,0.0011548864],"study_design_scores_gemma":[0.001119827,0.0002746578,0.0033083805,0.000012662612,0.00026606326,0.00014732301,0.000020286414,0.000023943117,0.9644456,0.000009223972,0.0300542,0.00031784043],"about_ca_topic_score_codex":0.00004329539,"about_ca_topic_score_gemma":0.000042289543,"teacher_disagreement_score":0.030086428,"about_ca_system_score_codex":0.000037908118,"about_ca_system_score_gemma":0.00005123083,"threshold_uncertainty_score":0.9999944},"labels":[],"label_agreement":null},{"id":"W1971244756","doi":"10.3389/fmicb.2014.00418","title":"Localization of aggregating proteins in bacteria depends on the rate of addition","year":2014,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Nucleoid; Green fluorescent protein; Protein subcellular localization prediction; Subcellular localization; Escherichia coli; Bacteria; Cell biology; Biophysics; Gene expression; Biology; Gene; Protein aggregation; Chemistry; Biochemistry; Genetics","score_opus":0.004235713766663354,"score_gpt":0.18873006329012942,"score_spread":0.18449434952346608,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971244756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929414,0.00008760301,0.006203057,0.00016819287,0.00027051452,0.00020661618,0.00003796031,0.0000026200596,0.000082054634],"genre_scores_gemma":[0.9971341,0.00008715629,0.002353233,0.00013397163,0.000040088365,0.000016356185,0.00020899878,0.000009046956,0.000017034148],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991214,0.00022779881,0.000284356,0.00019983598,0.000014630882,0.00015197412],"domain_scores_gemma":[0.9995367,0.000014227344,0.00018193272,0.00022248061,0.000035127177,0.00000953463],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003424195,0.00009470176,0.00018527577,0.000097001175,0.000016099935,0.00000246543,0.00017334892,0.00029084808,0.000014525535],"category_scores_gemma":[0.00015050365,0.00007392319,0.000034127257,0.00012419745,0.00017252729,0.0000013119009,0.00006191972,0.00008841496,7.881874e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011049811,0.000040624374,0.0034584368,0.000013671142,0.0000105641175,2.0657546e-7,0.000020972417,0.00008658738,0.99170864,0.00019207742,0.00051998766,0.0038377454],"study_design_scores_gemma":[0.00042377313,0.0004167768,0.001464645,0.000042771968,0.000003171336,0.0000024453386,0.000038050013,0.00018845477,0.9887109,0.0003500198,0.008279116,0.000079877944],"about_ca_topic_score_codex":0.000023432416,"about_ca_topic_score_gemma":0.00009362446,"teacher_disagreement_score":0.007759128,"about_ca_system_score_codex":0.000010959594,"about_ca_system_score_gemma":0.000022174492,"threshold_uncertainty_score":0.30145},"labels":[],"label_agreement":null},{"id":"W1971414139","doi":"10.1186/1471-2180-11-253","title":"Integration of a laterally acquired gene into a cell network important for growth in a strain of Vibrio rotiferianus","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Health and Medical Research Council; Medical Research Council","keywords":"Biology; Mobile genetic elements; Horizontal gene transfer; Gene; Integron; Genetics; Genome; Vibrio; Adaptation (eye); Vibrio Infections; Vibrio vulnificus; Computational biology; Bacteria; Plasmid; Virulence","score_opus":0.013311706044315095,"score_gpt":0.21117578610562798,"score_spread":0.1978640800613129,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971414139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99429077,0.00040927195,0.0044904435,0.000017248265,0.00017965988,0.0004125136,0.00014810148,0.000005696737,0.00004631664],"genre_scores_gemma":[0.9539823,0.000112492526,0.045260895,0.00004946254,0.000077156714,0.000032414748,0.000426462,0.000016734473,0.00004209404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987937,0.00006882399,0.00054364227,0.00031485187,0.00001632523,0.00026266064],"domain_scores_gemma":[0.9993422,0.00001049617,0.0002800026,0.00023647226,0.00010366465,0.00002715147],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022874652,0.00015755316,0.0003085716,0.00007185098,0.0000156744,0.0000026042403,0.00023127689,0.00046509635,0.000016765583],"category_scores_gemma":[0.000037835372,0.00014175895,0.00010640247,0.00009531354,0.00015508637,0.0000019567074,0.00011057542,0.000042493266,6.5937235e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005825593,0.00010278344,0.0030388916,0.000054313125,0.00002469068,7.7132376e-7,0.0001254973,0.0000039294496,0.9955251,0.00023921487,0.00006796677,0.00023427361],"study_design_scores_gemma":[0.0008728843,0.0011584328,0.0041270186,0.000015862965,0.000015178061,0.000014745293,0.000027632655,0.00001698801,0.9922841,0.0009981991,0.00032534203,0.00014362541],"about_ca_topic_score_codex":0.00010380268,"about_ca_topic_score_gemma":0.0008949303,"teacher_disagreement_score":0.040770452,"about_ca_system_score_codex":0.000008897217,"about_ca_system_score_gemma":0.00010160409,"threshold_uncertainty_score":0.5780762},"labels":[],"label_agreement":null},{"id":"W1971516615","doi":"10.1016/j.str.2013.11.006","title":"NleH Defines a New Family of Bacterial Effector Kinases","year":2014,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of Regina; Saskatchewan Cancer Agency; University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Effector; Kinase; Protein kinase domain; Biology; Cell biology; Protein-Serine-Threonine Kinases; SH3 domain; Mitogen-activated protein kinase; Biochemistry; Protein kinase A; Proto-oncogene tyrosine-protein kinase Src; Gene","score_opus":0.004047672145367589,"score_gpt":0.20251706574981315,"score_spread":0.19846939360444557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971516615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99847436,0.00025804204,0.0001630209,0.0000879305,0.00063965196,0.00009519842,0.000082921375,0.000012603861,0.00018625241],"genre_scores_gemma":[0.99697816,0.000038369224,0.0016143321,0.00011823409,0.00092526415,0.0000015668434,0.0001947204,0.000016557791,0.000112800066],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993434,0.000034090463,0.0001490029,0.0002402185,0.00006427669,0.00016900561],"domain_scores_gemma":[0.99949735,0.0000065673867,0.00007974296,0.00032000444,0.000041200947,0.0000551238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000035362584,0.00014339236,0.00017610607,0.000030841664,0.000025420748,0.000012327618,0.00019399232,0.0003260818,0.000066417],"category_scores_gemma":[0.00007941156,0.00011653907,0.0000679531,0.00006126348,0.00007768328,0.000001068062,0.00010126169,0.00006236885,0.0000035174173],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009120913,0.000006662708,0.00037103376,0.000016717237,0.000022119966,2.6314743e-7,0.000006325578,0.000002569497,0.9854229,0.00021687054,0.0023973295,0.011446011],"study_design_scores_gemma":[0.0004890472,0.0004615735,0.009870111,0.000007137877,0.000016062346,0.000007629461,0.000004030675,0.000002271929,0.85976946,0.0005623072,0.12867707,0.00013327268],"about_ca_topic_score_codex":0.000034852357,"about_ca_topic_score_gemma":0.000054672186,"teacher_disagreement_score":0.12627974,"about_ca_system_score_codex":0.0000026873251,"about_ca_system_score_gemma":0.000046716577,"threshold_uncertainty_score":0.47523254},"labels":[],"label_agreement":null},{"id":"W1972447176","doi":"10.1038/nbt1174","title":"Extracellular accumulation of recombinant proteins fused to the carrier protein YebF in Escherichia coli","year":2005,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":127,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Secretion; Escherichia coli; Extracellular; Pilus; Biology; Recombinant DNA; Secretory protein; Microbiology; Bacteria; Biochemistry; Gene","score_opus":0.011468748249963192,"score_gpt":0.26189885810762026,"score_spread":0.25043010985765707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972447176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9805181,0.0021037378,0.0005005279,0.015210523,0.00028183777,0.0012660422,0.000018193408,0.00003994038,0.00006112051],"genre_scores_gemma":[0.9932842,0.00009794097,0.005402588,0.00022333142,0.00016710337,0.00012234185,0.000035501278,0.000028419132,0.0006385412],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99855167,0.00007298419,0.00037767738,0.0004998379,0.00012591366,0.00037193735],"domain_scores_gemma":[0.9989205,0.0000064493515,0.00015865994,0.0007825394,0.00008603901,0.000045792473],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00031272823,0.00021719823,0.00024980825,0.00018807202,0.000058118745,0.000011906741,0.0005919633,0.0024285049,0.000020629477],"category_scores_gemma":[0.00023117023,0.00016743586,0.000075509444,0.0005101767,0.0001642161,0.0000037431064,0.0002791764,0.0007020279,0.000010512714],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001323225,0.000097882075,0.00012245431,0.000010826121,0.000020141062,0.000001947464,0.000022423788,0.00004874381,0.9810607,0.0022945956,0.00030773878,0.015880223],"study_design_scores_gemma":[0.0003852231,0.0003787056,0.0009892972,0.00001472188,0.0000057969182,0.0000042696524,0.00002077223,0.00006203631,0.68784463,0.00009679533,0.31005275,0.00014498695],"about_ca_topic_score_codex":0.00005631091,"about_ca_topic_score_gemma":0.0007777235,"teacher_disagreement_score":0.309745,"about_ca_system_score_codex":0.00003668453,"about_ca_system_score_gemma":0.00008825371,"threshold_uncertainty_score":0.99886656},"labels":[],"label_agreement":null},{"id":"W1973604751","doi":"10.1074/jbc.m801058200","title":"Modulation of the Regulatory Activity of Bacterial Two-component Systems by SlyA","year":2008,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"Arizona State University","keywords":"Regulon; Response regulator; Two-component regulatory system; Operon; Bacterial transcription; Psychological repression; Transcription factor; Transcription (linguistics); Cell biology; Signal transduction; Biology; Transcriptional regulation; Repressor; Regulator; Gene; Genetics; Promoter; Gene expression; Mutant","score_opus":0.014054533712156477,"score_gpt":0.2173757062789893,"score_spread":0.20332117256683283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973604751","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989359,0.0004611345,0.00007381869,0.000062222185,0.0002828819,0.00006577616,0.000038911796,0.0000023135865,0.00007706645],"genre_scores_gemma":[0.99926555,0.00024318893,0.00008911898,0.000008050492,0.00031347593,0.0000011381803,0.000016276128,0.0000060226403,0.00005720653],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990782,0.00006704572,0.00044176902,0.00014296873,0.00014336746,0.00012663934],"domain_scores_gemma":[0.9988008,0.000012976239,0.00072436273,0.00025881646,0.00015554299,0.00004746331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000191741,0.000119863034,0.00028998993,0.000011833455,0.000037245285,0.0000035618757,0.0003119045,0.0003749938,0.000018225755],"category_scores_gemma":[0.000080199075,0.000073435076,0.00018676287,0.0000597225,0.0003112938,0.0000025789316,0.00012474354,0.00014902638,1.714113e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025493672,0.0001234087,0.002105877,0.000022209635,0.000048576407,0.0000010826175,0.0000042339716,0.00004934303,0.99674916,0.0000033371539,0.00036690274,0.0002709541],"study_design_scores_gemma":[0.000511277,0.00024346722,0.016638925,0.000019068793,0.000011418542,0.00013280839,0.00000871467,0.000018887982,0.9799146,0.00001317996,0.002406459,0.000081196566],"about_ca_topic_score_codex":0.0000060069183,"about_ca_topic_score_gemma":2.1350588e-7,"teacher_disagreement_score":0.016834542,"about_ca_system_score_codex":0.000016050306,"about_ca_system_score_gemma":0.00006601594,"threshold_uncertainty_score":0.29945955},"labels":[],"label_agreement":null},{"id":"W1974127479","doi":"10.1016/j.resmic.2004.09.007","title":"A new family of mobilizable suicide plasmids based on broad host range R388 plasmid (IncW) and RP4 plasmid (IncPα) conjugative machineries and their cognate Escherichia coli host strains","year":2004,"lang":"en","type":"article","venue":"Research in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":319,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"Plasmid; Biology; Escherichia coli; Genetics; Bacterial conjugation; Gene; Transformation (genetics); Microbiology","score_opus":0.024325136105590842,"score_gpt":0.289124425086645,"score_spread":0.26479928898105415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974127479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955478,0.0015212744,0.00013098902,0.0010587408,0.00010138938,0.0006691146,0.0006779444,0.000016250473,0.00027651564],"genre_scores_gemma":[0.9962134,0.001719599,0.0013418755,0.00031333647,0.00006363182,0.00003916024,0.00017663525,0.000038892274,0.0000934851],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99761814,0.00034335064,0.00041111742,0.000773965,0.00009892713,0.00075451523],"domain_scores_gemma":[0.99901426,0.00014426219,0.00011880105,0.00039735454,0.00015428124,0.00017103193],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006504859,0.00035261648,0.0005111145,0.00030278703,0.00013442889,0.000038730803,0.00035652192,0.0007348986,0.000026534224],"category_scores_gemma":[0.00018026975,0.00029728864,0.0000666569,0.0003201186,0.0015941617,0.000006906424,0.0004179342,0.00055646006,0.000006212251],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011411882,0.00015276532,0.0015482679,0.00006647165,0.00006261481,0.000011757675,0.00011377197,0.000092600305,0.99570733,0.00025053084,0.00023967354,0.0006130544],"study_design_scores_gemma":[0.004323987,0.0036643685,0.0072057806,0.0001325006,0.000008484759,0.000028188533,0.00032305194,0.000121149824,0.97675836,0.00034618945,0.006742129,0.00034581686],"about_ca_topic_score_codex":0.00082233176,"about_ca_topic_score_gemma":0.00125043,"teacher_disagreement_score":0.01894895,"about_ca_system_score_codex":0.00005545288,"about_ca_system_score_gemma":0.00044008522,"threshold_uncertainty_score":0.9999479},"labels":[],"label_agreement":null},{"id":"W1974144264","doi":"10.1371/journal.pone.0035620","title":"Natural DNA Uptake by Escherichia coli","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; DNA; Escherichia coli; Gene; Plasmid; Genetics; Recombinase; Transformation (genetics); Recombination","score_opus":0.014827530837008482,"score_gpt":0.20601104546293203,"score_spread":0.19118351462592353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974144264","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99597144,0.0025095688,0.000011338027,0.00046741945,0.00017738529,0.00012473406,0.00002732421,0.000025521136,0.00068527175],"genre_scores_gemma":[0.9949504,0.00030259942,0.0019091079,0.0004285239,0.00048848114,0.000015919011,0.00015858476,0.00002162328,0.0017247592],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992288,0.000020574891,0.00012925403,0.00018969717,0.00009716596,0.00033453002],"domain_scores_gemma":[0.9995525,0.000002674339,0.00004783352,0.00026974452,0.00004005284,0.00008718281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007454159,0.00012490015,0.00013166838,0.000016534055,0.000046736,0.000014587079,0.0001660137,0.0002574213,0.000057790465],"category_scores_gemma":[0.000039278966,0.00011721716,0.000040962797,0.000061838284,0.00006443112,0.0000024074695,0.00011824572,0.00011266357,0.000055811604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027976615,0.0004550086,0.00073486136,0.000009792541,0.00010425075,1.9063556e-7,0.00000806283,2.1381005e-8,0.99530715,0.000055551947,0.0027748817,0.0005222273],"study_design_scores_gemma":[0.00021915243,0.00014560675,0.0022837357,0.000006054736,0.000034231354,0.0000010050115,0.000008865596,0.0000052541227,0.94619036,0.00001379209,0.05093272,0.00015922697],"about_ca_topic_score_codex":0.0000044005114,"about_ca_topic_score_gemma":0.0000039449155,"teacher_disagreement_score":0.049116816,"about_ca_system_score_codex":0.000007498539,"about_ca_system_score_gemma":0.00001623885,"threshold_uncertainty_score":0.4779977},"labels":[],"label_agreement":null},{"id":"W1974295653","doi":"10.1074/jbc.m009864200","title":"Roles of Glucitol in the GutR-mediated Transcription Activation Process in Bacillus subtilis","year":2001,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Transcription (linguistics); Bacillus subtilis; Binding site; Biology; Activator (genetics); Transcription factor; Cell biology; Genetics; Molecular biology; Biophysics; Gene; Bacteria","score_opus":0.015540417485831032,"score_gpt":0.2436280968862714,"score_spread":0.22808767940044036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974295653","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988212,0.00039629935,0.000038337545,0.0004902394,0.000031800806,0.0000700811,0.00000627313,0.0000019337465,0.0001438231],"genre_scores_gemma":[0.9987341,0.00095760747,0.000047414884,0.000076715296,0.00013586416,0.000003916314,0.00003355352,0.000003982825,0.000006824013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912864,0.000055379205,0.00042604655,0.00013681721,0.000104841645,0.00014826338],"domain_scores_gemma":[0.99950904,0.0000203119,0.00023564135,0.00011801198,0.00009069503,0.000026315425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003518064,0.00010368282,0.00018981448,0.000036556266,0.000012922901,0.000007322742,0.00028626298,0.00041681755,0.000022669465],"category_scores_gemma":[0.00019679772,0.00006392527,0.000077204095,0.00019243268,0.00010377147,0.000004265811,0.000019509518,0.00022520396,2.8476236e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047910382,0.00016803817,0.00766027,0.00001619863,0.000009203793,0.000008147368,0.000050455503,0.000026238873,0.98976326,0.0000016017183,0.000015086078,0.0018023731],"study_design_scores_gemma":[0.00072801416,0.0003955256,0.019041434,0.000031136376,0.0000044277613,0.00007867654,0.00038173448,0.000013888927,0.97648233,0.00013664152,0.0026234004,0.0000827708],"about_ca_topic_score_codex":0.0000030592619,"about_ca_topic_score_gemma":0.00001150672,"teacher_disagreement_score":0.013280933,"about_ca_system_score_codex":0.000013750803,"about_ca_system_score_gemma":0.000044172368,"threshold_uncertainty_score":0.32148787},"labels":[],"label_agreement":null},{"id":"W1974631785","doi":"10.1016/j.tim.2005.01.008","title":"Insertion of the bacterial type III translocon: not your average needle stick","year":2005,"lang":"en","type":"review","venue":"Trends in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Virulence; Secretion; Biology; Cytoplasm; Cell biology; Translocon; Membrane protein; Bacteria; Microbiology; Bacterial outer membrane; Membrane; Escherichia coli; Biochemistry; Gene; Genetics","score_opus":0.03365835567034364,"score_gpt":0.3000071985611472,"score_spread":0.26634884289080357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974631785","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.047751997,0.9486922,0.0000077382765,0.00013857157,0.0021853028,0.00043807965,0.00047315628,0.000015530388,0.00029744828],"genre_scores_gemma":[0.021362755,0.9751538,0.00014287909,0.00008861105,0.0005876564,0.00002282137,0.001548635,0.00005015835,0.0010426878],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980581,0.0002486521,0.00074102887,0.0005419355,0.00003619237,0.0003741042],"domain_scores_gemma":[0.99887383,0.000013581504,0.00036684625,0.0006673443,0.000045981567,0.000032408243],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00016720673,0.00040774432,0.0010195017,0.00020626317,0.000038208425,0.000009413809,0.00069113343,0.0016617948,0.00024215263],"category_scores_gemma":[0.000024155106,0.00028870493,0.0003883748,0.0003617935,0.00026093714,0.0000016523442,0.0002675123,0.00038189435,0.000014561042],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009561229,0.00006701083,0.0000029389028,0.00019981377,0.00008372074,0.0000011989681,0.00001587558,0.0000023243233,0.48119724,0.000018895073,0.00040359568,0.5179118],"study_design_scores_gemma":[0.00057700515,0.00028580014,0.000029815508,0.00027336786,0.00013509752,0.00008891662,0.000002931283,4.6618229e-7,0.023886895,0.000002756086,0.97442186,0.00029510597],"about_ca_topic_score_codex":0.000028565904,"about_ca_topic_score_gemma":0.00023576568,"teacher_disagreement_score":0.9740183,"about_ca_system_score_codex":0.000041803454,"about_ca_system_score_gemma":0.00016537186,"threshold_uncertainty_score":0.9999565},"labels":[],"label_agreement":null},{"id":"W1974699366","doi":"10.1134/s0006297911070054","title":"Structural diversity of the core oligosaccharide domain of Pseudomonas aeruginosa lipopolysaccharide","year":2011,"lang":"en","type":"review","venue":"Biochemistry (Moscow)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Pseudomonas aeruginosa; Heptose; Chemistry; Lipopolysaccharide; Oligosaccharide; Microbiology; Lipid A; Bacteria; Virulence; Biochemistry; Biology; Mutant; Genetics; Gene; Immunology","score_opus":0.030967081287928334,"score_gpt":0.26437660406969493,"score_spread":0.2334095227817666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974699366","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22789076,0.76980126,0.0000060930147,0.000014649904,0.0006138798,0.00048134048,0.00089445343,0.00001588672,0.00028167074],"genre_scores_gemma":[0.08983073,0.90839046,0.0005036453,0.000025065816,0.00038334832,0.000021748465,0.00033277625,0.000061747756,0.00045045797],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976818,0.000075350246,0.0008276175,0.0007543769,0.00023549318,0.00042536543],"domain_scores_gemma":[0.99698275,0.000017514654,0.0011420761,0.0015931646,0.0001518546,0.00011265412],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00017551477,0.0006176546,0.0012369594,0.000058372083,0.00015199218,0.000010847807,0.0018799846,0.0015360132,0.00007766871],"category_scores_gemma":[0.000094604,0.00045044426,0.0008694274,0.0002082638,0.00073556637,0.0000025529148,0.0027153974,0.00039863383,0.0000039023],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007328653,0.000091729366,0.00029556648,0.0062632198,0.0005822638,0.0000043298037,0.000038067552,2.1042482e-7,0.93199766,0.00027301817,0.0008940315,0.05948663],"study_design_scores_gemma":[0.00029406918,0.00013299064,0.000041395495,0.0011768922,0.000494533,0.00008626219,0.00002734882,2.8099225e-7,0.7732667,0.00015585938,0.22377415,0.0005495676],"about_ca_topic_score_codex":0.00012713627,"about_ca_topic_score_gemma":0.000015478734,"teacher_disagreement_score":0.22288013,"about_ca_system_score_codex":0.000041333584,"about_ca_system_score_gemma":0.0004373977,"threshold_uncertainty_score":0.9997947},"labels":[],"label_agreement":null},{"id":"W1974811921","doi":"10.1074/jbc.m000211200","title":"A Role for Asp75 in Domain Interactions in theBacillus subtilis Response Regulator Spo0A","year":2000,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Activator (genetics); Regulator; Response regulator; Bacillus subtilis; Biology; Mutant; Transcription (linguistics); Phosphorylation; Cell biology; Transcription factor; RNA polymerase II; Biochemistry; Molecular biology; Gene; Promoter; Genetics; Gene expression","score_opus":0.011874938488194285,"score_gpt":0.2535060093644888,"score_spread":0.2416310708762945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974811921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99836767,0.00050093787,0.000017434088,0.00060595036,0.00005839673,0.000104061255,0.000028249684,0.0000040278333,0.00031329272],"genre_scores_gemma":[0.9979894,0.00028520104,0.001003935,0.00009852465,0.00024114738,0.00001155291,0.000019935896,0.000009413994,0.00034086863],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988971,0.000076176984,0.00048435447,0.0002285458,0.00006354479,0.0002502876],"domain_scores_gemma":[0.9994761,0.000048689697,0.0001526448,0.00019201147,0.00005937919,0.000071170805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000544079,0.00014376802,0.00025794972,0.000047861027,0.000024565912,0.000014335861,0.00026922635,0.00036652837,0.00021210781],"category_scores_gemma":[0.00022506466,0.000109409186,0.00015489968,0.000118920645,0.000108134074,0.0000037700113,0.000049012047,0.00024522,0.0000020885511],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044857226,0.00014867504,0.0013458405,0.000006295662,0.000016113241,0.000014208361,0.00001900342,0.000019640416,0.9889989,0.0000032747455,0.000118039505,0.004824294],"study_design_scores_gemma":[0.00141634,0.00055282,0.017376423,0.00003371771,0.000005261572,0.00021604741,0.00014476903,0.000014394455,0.8799783,0.00071875355,0.09936803,0.0001751573],"about_ca_topic_score_codex":0.0000040250557,"about_ca_topic_score_gemma":0.00001682644,"teacher_disagreement_score":0.109020606,"about_ca_system_score_codex":0.000043325377,"about_ca_system_score_gemma":0.00007278208,"threshold_uncertainty_score":0.44615772},"labels":[],"label_agreement":null},{"id":"W1974949425","doi":"10.1074/jbc.275.4.2713","title":"Combinatorial Analysis of the Structural Requirements of theEscherichia coli Hemolysin Signal Sequence","year":2000,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Linker; Sequence motif; Biology; Peptide sequence; ATP-binding cassette transporter; Sequence alignment; Biochemistry; Structural motif; Mutant; Hemolysin; Genetics; Transporter; Gene; Virulence","score_opus":0.018156765962599842,"score_gpt":0.25886027567286535,"score_spread":0.2407035097102655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974949425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992037,0.00023702865,0.000010469909,0.00007839125,0.00011877116,0.000048374437,0.000047117064,0.0000018947788,0.00025425997],"genre_scores_gemma":[0.9993427,0.00013924486,0.00022269439,0.000039551538,0.00018810394,7.3262885e-7,0.00001888001,0.000004866498,0.0000432701],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988496,0.00006750735,0.0005755753,0.00016684229,0.00017903828,0.0001614461],"domain_scores_gemma":[0.9989247,0.000014583225,0.0005634237,0.00026790806,0.00017566052,0.000053778465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002168232,0.00013720151,0.00039029383,0.000022977922,0.00003635547,0.000007101282,0.0005524396,0.00037250872,0.00041234025],"category_scores_gemma":[0.000073872885,0.00008046101,0.0003779638,0.00032388527,0.00037507922,0.000002603733,0.00010678813,0.00017930056,2.561163e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000292051,0.000066039,0.0051011774,0.00001058081,0.00040716346,0.00000209385,0.000006356553,0.000079097226,0.9927049,0.00001570173,0.0000226876,0.0012920937],"study_design_scores_gemma":[0.0004503129,0.00035296206,0.010553628,0.000010705805,0.00020593898,0.000019770292,0.000018124947,0.00004645268,0.9873472,0.00030128512,0.0005971614,0.000096490614],"about_ca_topic_score_codex":0.0000049554847,"about_ca_topic_score_gemma":7.052328e-7,"teacher_disagreement_score":0.0054524513,"about_ca_system_score_codex":0.000014534115,"about_ca_system_score_gemma":0.000077778255,"threshold_uncertainty_score":0.45148364},"labels":[],"label_agreement":null},{"id":"W1975878555","doi":"10.1074/jbc.c110.204651","title":"Dual Conserved Periplasmic Loops Possess Essential Charge Characteristics That Support a Catch-and-Release Mechanism of O-antigen Polymerization by Wzy in Pseudomonas aeruginosa PAO1","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Periplasmic space; Biology; Mutant; Bacterial outer membrane; Gene; Biochemistry; Pseudomonas aeruginosa; Genetics; Escherichia coli; Bacteria","score_opus":0.0161013630087054,"score_gpt":0.2209024338259737,"score_spread":0.20480107081726828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975878555","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988924,0.00029262132,0.0002126527,0.000117506796,0.00015586514,0.000093790346,0.00014588755,0.0000061848596,0.00008306899],"genre_scores_gemma":[0.9973669,0.0019287565,0.00025080185,0.0000761503,0.000149527,0.0000039045217,0.0001445551,0.000015262991,0.00006416067],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986438,0.000058584163,0.0005824694,0.00029676637,0.00012914804,0.00028921606],"domain_scores_gemma":[0.99891406,0.000011954842,0.0006192183,0.00019668594,0.0001218474,0.0001362011],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022325793,0.00023644035,0.00044503124,0.000041213676,0.00003599821,0.000015330932,0.00025950256,0.00066492666,0.00019517567],"category_scores_gemma":[0.00009146266,0.00019117167,0.00013140921,0.00008138729,0.000275416,0.0000068260197,0.00016269377,0.0002463011,0.000001104147],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000524013,0.000254616,0.011487891,0.00003798353,0.00006208161,0.000043184627,0.000035810444,5.2748014e-8,0.9869184,0.000025573381,0.00006581627,0.000544577],"study_design_scores_gemma":[0.00085146114,0.0006090271,0.0069084135,0.000023827432,0.000027986292,0.00030975448,0.000065573025,0.000010425291,0.9905886,0.00005140973,0.00033520986,0.00021828087],"about_ca_topic_score_codex":0.00002272218,"about_ca_topic_score_gemma":0.0000017766538,"teacher_disagreement_score":0.004579478,"about_ca_system_score_codex":0.000012768062,"about_ca_system_score_gemma":0.00011694166,"threshold_uncertainty_score":0.77957547},"labels":[],"label_agreement":null},{"id":"W1976698236","doi":"10.1007/s10529-013-1280-9","title":"Construction of a tightly-controlled expression system for use in Pseudomonas","year":2013,"lang":"en","type":"article","venue":"Biotechnology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Operon; Cloning (programming); Biology; Reporter gene; Expression vector; Pseudomonas; Gene; Pseudomonas aeruginosa; Bioreporter; Cloning vector; Vector (molecular biology); Molecular cloning; Gene expression; Genetics; Bacteria; Recombinant DNA; Escherichia coli; Computer science","score_opus":0.006760178919445394,"score_gpt":0.19787024133001976,"score_spread":0.19111006241057438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976698236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99068296,0.00010785263,0.0058859647,0.0020302853,0.0003042903,0.00090853934,0.00001726494,0.000048842405,0.000013985392],"genre_scores_gemma":[0.97270197,0.00005455683,0.026706759,0.00015675124,0.00006634992,0.00024294596,0.00003359628,0.000019168263,0.000017884107],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988611,0.000041529835,0.000382232,0.00037780503,0.000056653196,0.000280723],"domain_scores_gemma":[0.9992893,0.000021425725,0.00019126583,0.00041296077,0.000056304387,0.000028790015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010490428,0.00016822101,0.00033777798,0.00021841154,0.00003536322,0.000014330588,0.00023227277,0.00083375326,0.0000059490635],"category_scores_gemma":[0.00007889847,0.00014503922,0.00010982473,0.0001267184,0.00028744285,0.000005961041,0.000104964376,0.00011612635,0.0000049414057],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024929259,0.000031771622,0.00087299215,0.000029834291,0.000031014995,0.000001136442,0.0000032750386,0.0000049039577,0.99555564,0.00060661783,0.00049150025,0.002122038],"study_design_scores_gemma":[0.0030905106,0.00022224146,0.00074914726,0.00003281481,0.000013103689,0.000024375124,0.00005645264,0.000081996295,0.99338436,0.000052170875,0.0021363802,0.0001564418],"about_ca_topic_score_codex":0.00005709027,"about_ca_topic_score_gemma":0.000020384305,"teacher_disagreement_score":0.020820795,"about_ca_system_score_codex":0.00002093217,"about_ca_system_score_gemma":0.000017760452,"threshold_uncertainty_score":0.6430669},"labels":[],"label_agreement":null},{"id":"W1976743723","doi":"10.1007/s00253-005-0310-5","title":"Growth of Escherichia coli MG1655 on LB medium: monitoring utilization of amino acids, peptides, and nucleotides with transcriptional microarrays","year":2006,"lang":"en","type":"article","venue":"Applied Microbiology and Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IBM (Canada); University of Toronto","funders":"","keywords":"Biochemistry; Nucleotide; Escherichia coli; Operon; Amino acid; Biology; Nitrogen assimilation; Chemistry; Gene","score_opus":0.0068670432300445595,"score_gpt":0.1917382397565883,"score_spread":0.18487119652654374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976743723","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976412,0.0010317961,0.00037349007,0.00039125883,0.000082649065,0.00024083586,0.0001098969,0.000026471984,0.00010241021],"genre_scores_gemma":[0.9944549,0.0013292738,0.003862188,0.000052472788,0.00006654345,0.000014800549,0.0001671899,0.000020877129,0.00003170711],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885577,0.000027604601,0.0003297737,0.00048136903,0.000036905276,0.00026856075],"domain_scores_gemma":[0.9994567,0.000016298529,0.0001958916,0.00023197349,0.00007088965,0.000028256352],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010421784,0.00024343343,0.00034716356,0.00012744885,0.000072978684,0.0000055957744,0.0001777819,0.0010279691,0.000004938317],"category_scores_gemma":[0.00001033594,0.00020534353,0.000036233978,0.00015504714,0.0012961674,0.0000028529812,0.00010266705,0.00018664007,8.548026e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039986646,0.000104985105,0.0036157412,0.00005112597,0.000070222646,0.00000106151,0.000012459799,0.0000017845938,0.9854418,0.009297895,0.00007279531,0.00093024457],"study_design_scores_gemma":[0.0009225146,0.0009921672,0.012038207,0.00002283948,0.000040545838,0.00004923488,0.000074992175,9.676255e-7,0.98225695,0.00039520685,0.0030033642,0.00020301685],"about_ca_topic_score_codex":0.00004047462,"about_ca_topic_score_gemma":0.000060051494,"teacher_disagreement_score":0.0089026885,"about_ca_system_score_codex":0.0000070110354,"about_ca_system_score_gemma":0.000037201215,"threshold_uncertainty_score":0.8373666},"labels":[],"label_agreement":null},{"id":"W1977306382","doi":"10.1021/bi0264364","title":"Osmosensor ProP of <i>Escherichia coli</i> Responds to the Concentration, Chemistry, and Molecular Size of Osmolytes in the Proteoliposome Lumen<sup>,</sup>","year":2002,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Osmolyte; Chemistry; Escherichia coli; Biochemistry; Ethylene glycol; Osmoregulation; Osmotic concentration; Osmotic pressure; Transporter; Biophysics; Osmotic shock; Extracellular; Biology","score_opus":0.0057882294451810585,"score_gpt":0.2030559675448088,"score_spread":0.19726773809962775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977306382","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952443,0.0012837461,0.000019177769,0.0024257284,0.000018422501,0.0004950866,0.000055479915,0.000006645424,0.00045141412],"genre_scores_gemma":[0.9983129,0.00016981836,0.00056338403,0.0004198535,0.000101889615,0.000074200565,0.000023288256,0.000017522427,0.00031717742],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874073,0.000066276174,0.00037528347,0.00037448824,0.00018079323,0.00026240828],"domain_scores_gemma":[0.9990009,0.00002823672,0.00015415656,0.0006451456,0.000114378985,0.00005717279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024277775,0.00020459267,0.00021215953,0.000009476538,0.000047413967,0.000022616197,0.0004839153,0.0003209078,0.00003039949],"category_scores_gemma":[0.00031057213,0.00014369194,0.00006842204,0.00025041707,0.00031493403,0.0000023145565,0.00015149759,0.00014847599,0.0000013406091],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009483128,0.00010354591,0.00036864457,0.000093642324,0.000029900422,0.0000028363354,0.00016327064,0.000016095266,0.99788374,0.000017017379,0.00078321836,0.0004432868],"study_design_scores_gemma":[0.0004740465,0.00018641919,0.0004027408,0.000028974475,0.000019963893,0.00001855315,0.00019928021,0.0001248805,0.9913754,0.000024339022,0.006977174,0.0001682218],"about_ca_topic_score_codex":0.000013825629,"about_ca_topic_score_gemma":0.000001706493,"teacher_disagreement_score":0.0065083043,"about_ca_system_score_codex":0.000009587002,"about_ca_system_score_gemma":0.00005590983,"threshold_uncertainty_score":0.5859587},"labels":[],"label_agreement":null},{"id":"W1977416745","doi":"10.1074/jbc.m909289199","title":"Multiple Roles for the Twin Arginine Leader Sequence of Dimethyl Sulfoxide Reductase of Escherichia coli","year":2000,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biochemistry; Reductase; Fumarate reductase; Escherichia coli; Mutant; Arginine; Chemistry; Flavin group; Biology; Enzyme; Amino acid; Gene","score_opus":0.02623520106176516,"score_gpt":0.2619164980014095,"score_spread":0.23568129693964432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977416745","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99697685,0.0020749203,0.00012279539,0.0004857889,0.00005958898,0.00010430625,0.00010767306,0.0000029492721,0.00006511918],"genre_scores_gemma":[0.99537313,0.0014166,0.0026275413,0.000074760355,0.00027947064,0.0000052705154,0.000030565443,0.0000088939105,0.0001837812],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898165,0.000033342807,0.00052956736,0.00017408839,0.00009151882,0.00018980824],"domain_scores_gemma":[0.9990239,0.00008123357,0.00040556173,0.00024540978,0.00018546081,0.000058421552],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031573267,0.00014389792,0.00031381188,0.000012336393,0.000033772787,0.000005935208,0.00042051138,0.00039020213,0.00011327803],"category_scores_gemma":[0.00035972512,0.0000857039,0.00022435335,0.00008342312,0.00043532084,0.0000022958052,0.000059567454,0.0001774246,4.6554342e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006638995,0.00011431415,0.00045948598,0.000028243448,0.00008961715,0.0000017740431,0.000009403797,0.000062701714,0.99451035,0.0000041103617,0.00027762438,0.0037784819],"study_design_scores_gemma":[0.0006548501,0.0005936845,0.00085741654,0.000020640558,0.000033170374,0.000038633843,0.00008294194,0.000030092688,0.9791449,0.0000712471,0.018368926,0.00010353533],"about_ca_topic_score_codex":0.00000438051,"about_ca_topic_score_gemma":9.686634e-7,"teacher_disagreement_score":0.0180913,"about_ca_system_score_codex":0.000007449442,"about_ca_system_score_gemma":0.00007482227,"threshold_uncertainty_score":0.34949034},"labels":[],"label_agreement":null},{"id":"W1977476149","doi":"10.1006/plas.2000.1471","title":"Transcription Reporters That Shuttle Cloned DNA between High-Copy Escherichia coli Plasmids and Low-Copy Broad-Host-Range Plasmids","year":2000,"lang":"en","type":"article","venue":"Plasmid","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Medical Research Council","keywords":"Biology; Plasmid; Promoter; Transcription (linguistics); Genetics; Origin of replication; Caulobacter crescentus; Molecular biology; DNA; Gene; Gene expression; Cell cycle","score_opus":0.009336406548615917,"score_gpt":0.2123694522185861,"score_spread":0.20303304566997019,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977476149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968974,0.00029307677,0.00007344146,0.00078546244,0.0004897031,0.0003870758,0.00024295629,0.00009555129,0.0007353052],"genre_scores_gemma":[0.9950541,0.0014498645,0.001320013,0.00037169267,0.0004014841,0.000047783513,0.0004422524,0.00007051933,0.0008422516],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99777395,0.000067769026,0.00047108656,0.00085945986,0.00023956683,0.00058815675],"domain_scores_gemma":[0.9990085,0.000021766153,0.000153499,0.0005517419,0.00005358139,0.00021094077],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018683179,0.0004292837,0.0004422027,0.00009054119,0.00018399219,0.00009033521,0.00031298646,0.0008543734,0.0003119243],"category_scores_gemma":[0.000024230045,0.00042574128,0.00013009996,0.00016838525,0.00038905544,0.000015258492,0.00008454549,0.0002732277,0.00006347278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042151986,0.00008266533,0.007841557,0.00004181264,0.00013176868,0.000013715928,0.0000519394,0.000008763823,0.98595357,0.00003358366,0.0011909403,0.004228162],"study_design_scores_gemma":[0.0015335577,0.00065331196,0.048475802,0.00003071437,0.00008570194,0.000026746064,0.000031213523,0.0000408543,0.89917713,0.00009224252,0.04932412,0.0005286032],"about_ca_topic_score_codex":0.00009262957,"about_ca_topic_score_gemma":0.000066808214,"teacher_disagreement_score":0.086776435,"about_ca_system_score_codex":0.00003004487,"about_ca_system_score_gemma":0.000065618595,"threshold_uncertainty_score":0.99981946},"labels":[],"label_agreement":null},{"id":"W1977653510","doi":"10.1073/pnas.252607699","title":"Transcriptional modulation of bacterial gene expression by subinhibitory concentrations of antibiotics","year":2002,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":539,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of British Columbia","funders":"","keywords":"Bacterial transcription; Biology; Promoter; Transcription (linguistics); Reporter gene; Gene; Gene expression; Transcription factor; Bacteria; Sigma factor; Regulation of gene expression; Microbiology; Cell biology; Genetics","score_opus":0.023917025317277105,"score_gpt":0.24967200331795988,"score_spread":0.22575497800068278,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977653510","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99894,0.00020204479,0.000009010174,0.000384995,0.000040094303,0.00009486383,0.00011464839,0.000001794289,0.00021255347],"genre_scores_gemma":[0.99801576,0.00019460246,0.001637775,0.000020699457,0.00007881053,4.5525417e-7,0.000004135,0.0000027603337,0.000044992943],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991067,0.0000063172633,0.0003099133,0.0001522654,0.00034504395,0.000079777295],"domain_scores_gemma":[0.9993807,0.000008568851,0.00036608064,0.000011013995,0.00021794694,0.000015691345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002217289,0.000063487365,0.00010714246,0.000048281458,0.000053575495,0.00000431426,0.00029075617,0.0001653103,0.000021316197],"category_scores_gemma":[0.00006603916,0.00004809098,0.000060199593,0.00016665408,0.00067756354,0.000013801373,0.00004130094,0.000048337035,1.06377875e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018216211,0.00006745929,0.0009826659,0.000021993867,0.000008297948,4.3653722e-10,0.000029990293,0.00003670655,0.99685174,0.0012485994,0.00065825554,0.000076096316],"study_design_scores_gemma":[0.00019398364,0.00010808921,0.00791411,0.000024243162,0.000006772058,0.000001496303,0.000018739636,0.00029350002,0.9904334,0.00054342713,0.00041498168,0.000047275276],"about_ca_topic_score_codex":9.590728e-7,"about_ca_topic_score_gemma":4.3563038e-8,"teacher_disagreement_score":0.006931444,"about_ca_system_score_codex":0.0000049739006,"about_ca_system_score_gemma":0.000013792662,"threshold_uncertainty_score":0.24965112},"labels":[],"label_agreement":null},{"id":"W1977811408","doi":"10.1002/prot.20365","title":"NMR structure of the 18 kDa protein CC1736 from <i>Caulobacter crescentus</i> identifies a member of the “START” domain superfamily and suggests residues mediating substrate specificity","year":2004,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences","keywords":"Caulobacter crescentus; Domain (mathematical analysis); Substrate (aquarium); Index (typography); Computational biology; Information retrieval; Chemistry; Computer science; Biochemistry; Biology; Bacterial protein; World Wide Web; Mathematics; Gene; Ecology","score_opus":0.00649349564142013,"score_gpt":0.1910888990625475,"score_spread":0.18459540342112737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977811408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976043,0.00028195622,0.00018265832,0.00029766955,0.00028715297,0.0007712743,0.00051852415,0.000010500393,0.000045935405],"genre_scores_gemma":[0.9960206,0.00008313208,0.0035227626,0.00011488037,0.0001414067,0.0000053467643,0.00007523306,0.000013943934,0.000022706876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987692,0.000058059035,0.0004931289,0.0002289516,0.00023639515,0.00021426119],"domain_scores_gemma":[0.9989673,0.000007536238,0.0003920611,0.00045830174,0.00012422401,0.000050615705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009375229,0.00024227846,0.0002371231,0.000038031616,0.0001808567,0.00005922262,0.000242277,0.000392648,0.000026616528],"category_scores_gemma":[0.00006511999,0.00013868009,0.000079643956,0.00016126962,0.00044429794,0.000018413313,0.00029003972,0.00024369749,2.338568e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001241701,0.000015077919,0.0046251365,0.0001369833,0.000056524183,1.18013155e-7,0.00023915875,0.000016373344,0.99400204,0.00019159543,0.000035263653,0.00055757776],"study_design_scores_gemma":[0.0007834317,0.00016213297,0.065686636,0.00008157522,0.00004055036,0.000010289181,0.00038430703,0.000012339801,0.9275259,0.0044552567,0.00069304724,0.00016455799],"about_ca_topic_score_codex":0.00012973598,"about_ca_topic_score_gemma":0.00094718626,"teacher_disagreement_score":0.06647615,"about_ca_system_score_codex":0.000012886077,"about_ca_system_score_gemma":0.000084803374,"threshold_uncertainty_score":0.565521},"labels":[],"label_agreement":null},{"id":"W1977836482","doi":"10.1016/j.bbamcr.2013.10.018","title":"Everything old is new again: An update on current research on the Cpx envelope stress response","year":2013,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Molecular Cell Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":224,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Alberta Innovates - Health Solutions","keywords":"Periplasmic space; Bacterial outer membrane; Biology; Inner membrane; Cell envelope; Protein folding; Unfolded protein response; Membrane protein; Cell biology; Genetics; Escherichia coli; Gene; Membrane; Endoplasmic reticulum","score_opus":0.14593315464591167,"score_gpt":0.41908565267993025,"score_spread":0.2731524980340186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977836482","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.35756776,0.627589,0.000017741166,0.006879907,0.00069013593,0.0052959207,0.00072321924,0.00009382934,0.0011424874],"genre_scores_gemma":[0.028696086,0.96508485,0.00018983848,0.0006965928,0.0010106196,0.00047859663,0.001242953,0.00037705377,0.0022234097],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9841066,0.007429874,0.0010290548,0.0029603085,0.0022177715,0.0022563834],"domain_scores_gemma":[0.99271345,0.000624472,0.00044380585,0.0047557205,0.00072613946,0.0007364396],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.0046563316,0.0012923632,0.0013597064,0.001098684,0.00076520647,0.000839822,0.004485662,0.0019672744,0.00013089293],"category_scores_gemma":[0.00057734066,0.00092743296,0.0008683109,0.001712269,0.0010421858,0.000017760367,0.0027417038,0.004874321,0.0010692655],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006606285,0.0007807468,4.0353818e-8,0.0010463528,0.0002423116,0.00004208141,0.00010512841,0.0000011739396,0.798207,0.0005080781,0.028072303,0.17033419],"study_design_scores_gemma":[0.00024319347,0.0015452751,0.000002096737,0.0012072173,0.000057624915,0.000004464746,0.000038610582,0.0000042520437,0.4665121,0.00012831978,0.5296455,0.0006113397],"about_ca_topic_score_codex":0.00011346696,"about_ca_topic_score_gemma":0.0000081423605,"teacher_disagreement_score":0.5015732,"about_ca_system_score_codex":0.00024249426,"about_ca_system_score_gemma":0.002441544,"threshold_uncertainty_score":0.99998283},"labels":[],"label_agreement":null},{"id":"W1978302238","doi":"10.1007/s12033-010-9320-3","title":"Enhancing Functional Expression of Heterologous Burkholderia Lipase in Escherichia coli","year":2010,"lang":"en","type":"article","venue":"Molecular Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Periplasmic space; Escherichia coli; Biology; Fusion protein; Chaperone (clinical); Signal peptide; Heterologous expression; Biochemistry; Cytoplasm; GroEL; Lipase; Burkholderia; DsbA; Extracellular; GroES; Molecular biology; Microbiology; Bacteria; Peptide sequence; Recombinant DNA; Gene; Enzyme; Genetics","score_opus":0.005113326921996461,"score_gpt":0.20982082358991092,"score_spread":0.20470749666791446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978302238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936165,0.00022830283,0.0045920857,0.0006269135,0.00053433515,0.0002326669,0.000013884491,0.00004901734,0.00010624304],"genre_scores_gemma":[0.9925296,0.00007375917,0.006915578,0.00021169348,0.00008178025,0.000038995506,0.00007824801,0.000035124664,0.000035221587],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984241,0.00005502256,0.00041522275,0.0005812325,0.00011484814,0.00040955158],"domain_scores_gemma":[0.99895066,0.000008051631,0.0001660313,0.0007482965,0.00006600262,0.00006095821],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00019716445,0.0002442298,0.00029414924,0.00024573127,0.000044321518,0.000010595505,0.00039337564,0.0016312167,0.000058143818],"category_scores_gemma":[0.00016673942,0.00024625586,0.000105689025,0.00027927436,0.00038081888,0.0000030979231,0.0003932494,0.000521782,0.000009113152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011947599,0.00012723192,0.00027961237,0.00001405521,0.000017270691,0.000019412922,0.0000068148875,0.000021963308,0.9977471,0.00068245473,0.000053299787,0.00091131177],"study_design_scores_gemma":[0.00071064854,0.00045491595,0.0014239425,0.000011776965,0.000009068692,0.000038361315,0.000019856507,0.000019647414,0.9893193,0.00031446357,0.007442485,0.0002354832],"about_ca_topic_score_codex":0.000030286106,"about_ca_topic_score_gemma":0.00019528954,"teacher_disagreement_score":0.008427746,"about_ca_system_score_codex":0.00000933257,"about_ca_system_score_gemma":0.00007680355,"threshold_uncertainty_score":0.999999},"labels":[],"label_agreement":null},{"id":"W1979079481","doi":"10.1002/bies.20585","title":"Rebuilding microbial genomes","year":2007,"lang":"en","type":"article","venue":"BioEssays","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre","funders":"Michael Smith Health Research BC","keywords":"Genome; Biology; Gene; Synthetic biology; Computational biology; DNA; Genetics","score_opus":0.00841060990888765,"score_gpt":0.23544959447430952,"score_spread":0.22703898456542188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979079481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934141,0.00089299027,0.0017562577,0.00021421754,0.0005031342,0.0000938627,0.0000129600785,0.000029614923,0.003082841],"genre_scores_gemma":[0.9948616,0.00023697686,0.0033412585,0.00025416983,0.00066823274,0.000001886752,0.000051447925,0.000018393153,0.00056605064],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99920166,0.000011431475,0.00016072614,0.00027259445,0.000053015847,0.00030057452],"domain_scores_gemma":[0.99957484,0.0000040167,0.00004938504,0.0002746655,0.000037642494,0.000059461792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023039372,0.00011593485,0.00009225967,0.00005169212,0.00006620931,0.000018543782,0.00019643172,0.0002893308,0.00003043574],"category_scores_gemma":[0.000020730966,0.000108012864,0.000060075414,0.000081184924,0.0000701119,9.672734e-7,0.00014220609,0.000066458226,0.000025474983],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042116473,0.000022090737,0.0010322918,0.0000038044843,0.000016506257,0.000004159939,0.0000067840974,4.2488077e-7,0.98628277,0.00054086663,0.0015856066,0.010462562],"study_design_scores_gemma":[0.00018345905,0.00010982563,0.0013654496,0.0000023371863,0.000004775041,0.000018888988,0.000015858059,8.5654966e-7,0.7009784,0.0000527174,0.29714623,0.000121198376],"about_ca_topic_score_codex":0.000008131128,"about_ca_topic_score_gemma":0.000038499235,"teacher_disagreement_score":0.29556063,"about_ca_system_score_codex":0.000009350304,"about_ca_system_score_gemma":0.000025048588,"threshold_uncertainty_score":0.4404637},"labels":[],"label_agreement":null},{"id":"W1979167986","doi":"10.1016/j.bbrc.2015.03.133","title":"Crystal structure of GnsA from Escherichia coli","year":2015,"lang":"en","type":"article","venue":"Biochemical and Biophysical Research Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research; University of Toronto","funders":"Beijing Synchrotron Radiation Facility; National Key Research and Development Program of China; National Natural Science Foundation of China; European Molecular Biology Laboratory; National Science Foundation","keywords":"Escherichia coli; Antitoxin; Regulator; Suppressor; Phosphatidylethanolamine; Escherichia coli Proteins; Mutation; Biology; Chemistry; Crystal structure; Cell biology; Toxin; Crystallography; Genetics; Gene; Membrane; Phospholipid","score_opus":0.05327424877791626,"score_gpt":0.3356286359921103,"score_spread":0.28235438721419404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979167986","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968408,0.0012197006,0.000030570503,0.0012526207,0.000029094197,0.00013145416,0.00021234615,0.000009297326,0.00027413736],"genre_scores_gemma":[0.9951145,0.0005048182,0.0037537843,0.000046256097,0.00015487825,0.0000087475055,0.00035165576,0.000010905696,0.000054432043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989723,0.00013687153,0.0001811031,0.00026848665,0.00021419418,0.00022702914],"domain_scores_gemma":[0.9984484,0.000055782548,0.000045441295,0.00094434724,0.00031362887,0.00019245643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013717117,0.00010734093,0.00015389496,0.000037959242,0.00008292469,0.000024209801,0.0006880217,0.00027893577,0.000008774153],"category_scores_gemma":[0.00031217225,0.000089807705,0.00004669266,0.00022270493,0.0011249409,0.0000028135075,0.0009922216,0.00028661103,0.0000042581105],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008061825,0.00013727079,0.00011845119,0.000005880656,0.000027339382,1.5630091e-7,0.000023392358,1.0473845e-7,0.99622124,0.00090397993,0.0018172008,0.0006643903],"study_design_scores_gemma":[0.00032134453,0.00031048694,0.00091675547,0.000009888315,0.000008919749,7.55141e-7,0.00008910661,0.00006831874,0.9707158,0.0027242037,0.024723032,0.00011136614],"about_ca_topic_score_codex":0.00016551268,"about_ca_topic_score_gemma":0.000024449775,"teacher_disagreement_score":0.025505394,"about_ca_system_score_codex":0.000011415542,"about_ca_system_score_gemma":0.00011785687,"threshold_uncertainty_score":0.41448915},"labels":[],"label_agreement":null},{"id":"W1979449454","doi":"10.1074/jbc.m107803200","title":"WaaP of Pseudomonas aeruginosa Is a Novel Eukaryotic Type Protein-tyrosine Kinase as Well as a Sugar Kinase Essential for the Biosynthesis of Core Lipopolysaccharide","year":2002,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biochemistry; Phosphorylation; Chemistry; Kinase; MAP2K7; Molecular biology; Protein kinase A; Autophosphorylation; Biology; Cyclin-dependent kinase 2","score_opus":0.023853600346467427,"score_gpt":0.24874963927058522,"score_spread":0.2248960389241178,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979449454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99598503,0.0022855056,0.00016159406,0.0009613746,0.00014420012,0.00025106018,0.00008494142,0.000005574514,0.00012071007],"genre_scores_gemma":[0.99666643,0.0011818887,0.0011377387,0.00014980488,0.00043035636,0.000007765624,0.000014373632,0.000018221504,0.00039341868],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985333,0.000023222046,0.0006793395,0.00029543653,0.00017917814,0.00028953506],"domain_scores_gemma":[0.99828935,0.00007104268,0.0007292861,0.00039880694,0.00040247434,0.00010901564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025344448,0.00024877116,0.00045095518,0.00003613765,0.000063546366,0.0000146161865,0.00059167936,0.0006031626,0.00059421913],"category_scores_gemma":[0.0006477266,0.00015619291,0.00036780245,0.00013301669,0.0004522387,0.000003830886,0.00017693835,0.00022569517,0.0000065377917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081150146,0.00042538432,0.00023957189,0.00008821251,0.00016244184,0.000008819467,0.000011126324,0.0000036158262,0.9966844,0.00004466437,0.0006063741,0.0009139301],"study_design_scores_gemma":[0.0008894378,0.0015327896,0.00016147233,0.00006835923,0.00010417244,0.00016630215,0.00006219031,0.000051803207,0.99171996,0.00013698326,0.0049192063,0.00018730134],"about_ca_topic_score_codex":0.000015631262,"about_ca_topic_score_gemma":0.0000010468127,"teacher_disagreement_score":0.0049643754,"about_ca_system_score_codex":0.000014249391,"about_ca_system_score_gemma":0.00008373192,"threshold_uncertainty_score":0.65062827},"labels":[],"label_agreement":null},{"id":"W1979583433","doi":"10.1371/journal.pone.0084775","title":"A Novel Role for an ECF Sigma Factor in Fatty Acid Biosynthesis and Membrane Fluidity in Pseudomonas aeruginosa","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Laboratório Nacional de Biociências; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Centro Nacional de Pesquisa em Energia e Materiais; Governo Brasil; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Sigma factor; Pseudomonas aeruginosa; Biology; Biochemistry; Fatty acid; Enzyme; Membrane fluidity; Gene; Cell biology; Microbiology; Chemistry; Bacteria; Genetics; RNA; Membrane; RNA polymerase","score_opus":0.02848521819164102,"score_gpt":0.21858144374081132,"score_spread":0.1900962255491703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979583433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99846405,0.00025664963,0.000113462185,0.00041362224,0.000024387227,0.00056983775,0.000106148196,0.000013646989,0.000038173344],"genre_scores_gemma":[0.9922352,0.00031541561,0.007005403,0.000109103494,0.00009594833,0.00012722003,0.00006770585,0.000021228094,0.000022795452],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896544,0.000028223134,0.00021624216,0.0004170349,0.00007368554,0.0002993602],"domain_scores_gemma":[0.99950945,0.00001551526,0.00005079214,0.00029563246,0.000051565574,0.00007706999],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009210347,0.00016615607,0.00024608383,0.000083556806,0.000030036645,0.000030707204,0.00017393049,0.00037814467,0.00002429858],"category_scores_gemma":[0.00009958798,0.0001592572,0.000033964818,0.00007974051,0.00007354006,0.000007592087,0.00010923611,0.000091338436,0.000003856245],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006435325,0.0007466807,0.0043114796,0.00003807172,0.000034379405,3.77729e-7,0.000031027143,4.8350023e-7,0.9914671,0.000013413353,0.000007024488,0.0032855766],"study_design_scores_gemma":[0.00076886185,0.00039962525,0.020004679,0.000023253213,0.000013653471,0.0000019992988,0.000038582573,0.0002766121,0.9779936,0.00008677723,0.00018551188,0.00020683158],"about_ca_topic_score_codex":0.00023022927,"about_ca_topic_score_gemma":0.0007682899,"teacher_disagreement_score":0.015693199,"about_ca_system_score_codex":0.000012380357,"about_ca_system_score_gemma":0.000027180045,"threshold_uncertainty_score":0.649432},"labels":[],"label_agreement":null},{"id":"W1979800460","doi":"10.1139/cjm-46-1-1","title":"Evidence for plasmid-mediated chemotaxis of &lt;i&gt;Pseudomonas putida&lt;/i&gt; towards naphthalene and salicylate","year":2000,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Plasmid; Pseudomonas putida; Chemotaxis; Nap; Mutant; Microbiology; Recombinant DNA; Strain (injury); Biology; Pseudomonadales; EcoRI; Chemistry; Molecular biology; Pseudomonas; Biochemistry; Bacteria; DNA; Gene; Genetics","score_opus":0.014436580263901305,"score_gpt":0.22698103556004331,"score_spread":0.21254445529614202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979800460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98733866,0.0103723295,0.000049335405,0.0012420203,0.00031953125,0.00018941013,0.0003788381,0.0000032559985,0.000106601874],"genre_scores_gemma":[0.9946752,0.0031436156,0.001239742,0.0003179636,0.00023955,0.000004217004,0.00008149001,0.000025230212,0.0002729672],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99857235,0.00007458177,0.0005457306,0.00030435895,0.00003779802,0.00046515977],"domain_scores_gemma":[0.9988143,0.000044837016,0.00028868724,0.00025699937,0.00028404803,0.00031112207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036387282,0.00021957826,0.00041911603,0.00017803404,0.00007786891,0.000017063403,0.00039541634,0.00061433366,0.00018485043],"category_scores_gemma":[0.0002820521,0.00020092241,0.000156819,0.000117117226,0.0005291383,0.00000680136,0.00003925208,0.00013954082,0.0000048759575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024155826,0.000015840531,0.0002662646,0.000028245844,0.00012083256,0.00001648258,0.00003470083,0.000007086278,0.98752016,0.000035030946,0.0033651413,0.008348684],"study_design_scores_gemma":[0.0010383029,0.0014342017,0.002071162,0.00007744751,0.000050534592,0.0011524743,0.000007678764,0.0000056918648,0.6719265,0.000069983565,0.3219373,0.00022871411],"about_ca_topic_score_codex":0.00013921382,"about_ca_topic_score_gemma":0.003212983,"teacher_disagreement_score":0.31857216,"about_ca_system_score_codex":0.000036086716,"about_ca_system_score_gemma":0.0008593763,"threshold_uncertainty_score":0.8193378},"labels":[],"label_agreement":null},{"id":"W1979907396","doi":"10.1128/jb.182.15.4352-4355.2000","title":"Identification of a Second Region of the Spo0A Response Regulator of <i>Bacillus subtilis</i> Required for Transcription Activation","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Bacillus subtilis; Operon; Biology; Psychological repression; Regulator; Response regulator; Transcription (linguistics); Transcription factor; Promoter; Genetics; Repressor; Amino acid; Cell biology; Gene; Mutant; Gene expression; Bacteria","score_opus":0.01149419874633721,"score_gpt":0.2269618388228933,"score_spread":0.2154676400765561,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979907396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984817,0.000119834585,0.0004055205,0.000481488,0.00025805677,0.00019613229,0.00004578105,0.0000013871174,0.000010119239],"genre_scores_gemma":[0.9992402,0.00016863244,0.00020784227,0.00003609322,0.00009811135,0.0000035244705,0.000013871509,0.000010405699,0.00022128763],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986647,0.00018686516,0.0008279797,0.00013466956,0.000076473545,0.00010934814],"domain_scores_gemma":[0.9982429,0.000029992178,0.0010812165,0.00030161312,0.00032137276,0.000022862687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005384152,0.000095747666,0.0002911278,0.00008093538,0.000025814239,0.0000032705577,0.00024295776,0.00033041617,0.000025714233],"category_scores_gemma":[0.00014264455,0.00007256546,0.00021122789,0.00010198385,0.00022821654,0.000009285476,0.000019173955,0.00007447646,1.4691155e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0067106634,0.00006584636,0.00013818784,0.000053059848,0.000058773137,2.2577382e-7,0.00007141767,0.000016720755,0.98846734,0.000035044388,0.00012840597,0.0042543104],"study_design_scores_gemma":[0.00086195127,0.0013153593,0.03696318,0.00003469367,0.000043999236,0.00007318157,0.000032337168,0.000009109178,0.950976,0.0001931888,0.009437205,0.000059787588],"about_ca_topic_score_codex":0.0000028033385,"about_ca_topic_score_gemma":0.000006135638,"teacher_disagreement_score":0.037491336,"about_ca_system_score_codex":0.000014229617,"about_ca_system_score_gemma":0.00010998169,"threshold_uncertainty_score":0.29591337},"labels":[],"label_agreement":null},{"id":"W1979944922","doi":"10.1139/w03-047","title":"Wild-type <i>Escherichia coli</i> producing microcins B17, D93, J25, and L; cloning of genes for microcin L production and immunity","year":2003,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Escherichia coli; Gene; HindIII; Biology; Cloning (programming); Molecular cloning; Strain (injury); Immunity; Molecular biology; Gene cluster; Microbiology; Plasmid; Genetics; Gene expression; Immune system","score_opus":0.008228137877158457,"score_gpt":0.20263580541538934,"score_spread":0.19440766753823088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979944922","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9872423,0.011556772,0.00007726323,0.00034934562,0.0005382206,0.00018871359,0.00003133607,0.0000015457525,0.000014537472],"genre_scores_gemma":[0.9935742,0.0011118229,0.00483927,0.00020089289,0.00015189718,0.0000017566617,0.000025018386,0.000017855677,0.000077306875],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990549,0.00009163375,0.00033299858,0.00023392895,0.000014069598,0.0002724602],"domain_scores_gemma":[0.9991413,0.000011570358,0.00026307855,0.0001670766,0.00029264213,0.00012434216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038867185,0.00014381949,0.00027133775,0.00011518852,0.00012480466,0.000013991072,0.00012438638,0.00030011978,0.0000035099356],"category_scores_gemma":[0.00026113619,0.00013638994,0.000051368213,0.00008993736,0.00030432676,0.000004453028,0.000025596588,0.00014558964,1.9330086e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007100922,0.000012278066,0.0034332767,0.00003888874,0.00007822933,0.0000015093203,0.000090902366,0.0000052315554,0.99470663,0.000029268685,0.000812605,0.00072019343],"study_design_scores_gemma":[0.0003831466,0.0006827391,0.0009717553,0.000029366409,0.00004296232,0.00050764217,0.0001289484,3.4932228e-7,0.89931905,0.000041198888,0.09775935,0.00013350132],"about_ca_topic_score_codex":0.00025296083,"about_ca_topic_score_gemma":0.0036926968,"teacher_disagreement_score":0.096946746,"about_ca_system_score_codex":0.000019062007,"about_ca_system_score_gemma":0.00052482623,"threshold_uncertainty_score":0.556182},"labels":[],"label_agreement":null},{"id":"W1980962947","doi":"10.1128/jb.00332-15","title":"Homologues of Genetic Transformation DNA Import Genes Are Required for Rhodobacter capsulatus Gene Transfer Agent Recipient Capability Regulated by the Response Regulator CtrA","year":2015,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Horizontal gene transfer; Rhodobacter; Gene; Genetics; Population; Transformation (genetics); DNA; Bacterial genetics; Genome; Escherichia coli; Mutant","score_opus":0.019627667026508068,"score_gpt":0.2444912478971532,"score_spread":0.22486358087064515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980962947","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993039,0.0018440743,0.0018266462,0.0016982668,0.00082953426,0.0005204065,0.00022833618,0.000008722997,0.000004979351],"genre_scores_gemma":[0.99746776,0.00051387737,0.0013351637,0.00014634189,0.00028641333,0.000024023426,0.0001344289,0.000033196782,0.00005879868],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973013,0.0005121444,0.0012802035,0.00033398313,0.00017959106,0.00039277627],"domain_scores_gemma":[0.99795175,0.000052177755,0.0006402,0.0005520397,0.0006331422,0.00017072354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015354191,0.00028658786,0.0006042368,0.000114029295,0.000076499826,0.000019901914,0.0004648436,0.0006792267,0.00001116371],"category_scores_gemma":[0.00022069692,0.0002017412,0.00033130814,0.00012455654,0.0004262298,0.0000139733975,0.00005641294,0.00017697761,9.782116e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0060101277,0.0001278607,0.0010008855,0.000025679654,0.00020537563,0.000004739569,0.00022273962,0.00005436235,0.9889701,0.000008585131,0.0008825934,0.002486959],"study_design_scores_gemma":[0.0021078517,0.0036762755,0.061499182,0.000021391064,0.00013589376,0.0005998653,0.00016012747,0.000030039897,0.8956323,0.00017856403,0.03571431,0.00024420174],"about_ca_topic_score_codex":0.0000163482,"about_ca_topic_score_gemma":0.000024731013,"teacher_disagreement_score":0.09333779,"about_ca_system_score_codex":0.00007273605,"about_ca_system_score_gemma":0.0002942689,"threshold_uncertainty_score":0.8226767},"labels":[],"label_agreement":null},{"id":"W1982270074","doi":"10.1016/j.tcb.2011.04.005","title":"The SecY complex: conducting the orchestra of protein translocation","year":2011,"lang":"en","type":"review","venue":"Trends in Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Biology; Translocon; Sec61; Lipid bilayer; Transport protein; Cell biology; Ribosome; Channel (broadcasting); Cytoplasm; Biophysics; Nanotechnology; Membrane protein; Membrane; Computer science; Biochemistry; RNA; Materials science","score_opus":0.13953452276198164,"score_gpt":0.3442621723332505,"score_spread":0.20472764957126888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982270074","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0028310744,0.99476594,0.000014652375,0.000098656405,0.00023073552,0.00041385734,0.000056768647,0.000008268931,0.0015800495],"genre_scores_gemma":[0.025164345,0.9734567,0.00019176643,0.000013195782,0.00016811756,0.000116788266,0.0004805711,0.000029857103,0.00037869773],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.998173,0.00039653073,0.00064248557,0.00041922298,0.000037068807,0.00033170244],"domain_scores_gemma":[0.998771,0.000047150268,0.00044197965,0.00067375385,0.00004109965,0.000024985602],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046876914,0.0003007913,0.0006170103,0.00010005722,0.000088000445,0.000009826934,0.00079131854,0.00092912046,0.000032745134],"category_scores_gemma":[0.000028979563,0.00016062589,0.00023814918,0.00026275177,0.000578673,8.402635e-7,0.00015630006,0.00037157538,0.000005128561],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000150788965,0.000035690464,0.0000020311454,0.00027690074,0.00004970227,3.3352288e-7,0.000023200884,1.6043461e-7,0.064132504,0.0006115831,0.000051494233,0.93480134],"study_design_scores_gemma":[0.00016283403,0.00029002724,0.000005115611,0.0001409039,0.000057477882,0.000009979331,0.000022773613,0.0000011332801,0.018184407,0.000103695886,0.9808377,0.00018397391],"about_ca_topic_score_codex":0.00006240996,"about_ca_topic_score_gemma":0.00020454155,"teacher_disagreement_score":0.9807862,"about_ca_system_score_codex":0.000012768732,"about_ca_system_score_gemma":0.00011569202,"threshold_uncertainty_score":0.71662277},"labels":[],"label_agreement":null},{"id":"W1983351627","doi":"10.3791/4056","title":"Mapping Bacterial Functional Networks and Pathways in &lt;em&gt;Escherichia Coli&lt;/em&gt; using Synthetic Genetic Arrays","year":2012,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina; University of Toronto","funders":"Canadian Institutes of Health Research; Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Biology; Genetics; Mutant; Homologous recombination; Gene; Epistasis; Genome; Phenotype; Computational biology; Genetic screen; Allele","score_opus":0.02533122183570682,"score_gpt":0.300920423233466,"score_spread":0.2755892013977592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983351627","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871722,0.005050449,0.005809759,0.000021155582,0.0017027466,0.00019252041,0.0000066930734,0.000008056913,0.00003641276],"genre_scores_gemma":[0.9908125,0.0006987127,0.006807601,0.00013237337,0.0014530641,0.000009823261,0.00001969131,0.000047088455,0.00001919397],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99793875,0.00018792336,0.00075832737,0.00030086836,0.00025607337,0.0005580633],"domain_scores_gemma":[0.9989073,0.00001601354,0.0004933511,0.00024081631,0.000117858595,0.00022463381],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00046162753,0.00031163637,0.0004528234,0.00018540777,0.00010747343,0.00007940093,0.00021576411,0.00048435823,0.00008917817],"category_scores_gemma":[0.00006386699,0.00029134873,0.00014414323,0.00017502403,0.000104209175,0.00002109334,0.00021345596,0.00022165584,0.0000027838844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004806514,0.0002701535,0.0013810454,0.0000123939735,0.00011673992,0.000009724476,0.0002532813,0.00012924036,0.99611986,0.00002435472,0.00012580176,0.0010767386],"study_design_scores_gemma":[0.0052068867,0.0010009959,0.026348751,0.00017142964,0.00008479174,0.0004249992,0.0005858631,0.0013169616,0.9461221,0.00005182602,0.017931662,0.0007536961],"about_ca_topic_score_codex":0.0000039150596,"about_ca_topic_score_gemma":0.000004623796,"teacher_disagreement_score":0.04999774,"about_ca_system_score_codex":0.00006869149,"about_ca_system_score_gemma":0.00010148245,"threshold_uncertainty_score":0.99995387},"labels":[],"label_agreement":null},{"id":"W1983521560","doi":"10.1074/jbc.m114.569624","title":"Site-directed Fluorescence Labeling Reveals a Revised N-terminal Membrane Topology and Functional Periplasmic Residues in the Escherichia coli Cell Division Protein FtsK","year":2014,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; University of Guelph","keywords":"Periplasmic space; Cell division; Biology; Membrane topology; Cytoplasm; Translocase; Transmembrane domain; Cell biology; Topology (electrical circuits); Transmembrane protein; Integral membrane protein; Inner membrane; Cell membrane; Membrane protein; Escherichia coli; Biochemistry; Cell; Membrane; Gene","score_opus":0.010953720367217788,"score_gpt":0.22258836884614602,"score_spread":0.21163464847892824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983521560","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841523,0.000624885,0.0000682124,0.0005634773,0.000062951935,0.00012374659,0.0000067900864,0.0000079089705,0.00012680402],"genre_scores_gemma":[0.99677885,0.0004106469,0.0021642093,0.00020428484,0.00032366035,0.000007467524,0.000021969649,0.000008152149,0.00008073614],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986745,0.00021397734,0.00045124386,0.0002871092,0.00012815092,0.0002450319],"domain_scores_gemma":[0.9992509,0.00006191534,0.00030190707,0.0002019565,0.00011289963,0.000070416965],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007382549,0.00018093246,0.0002934724,0.000028025577,0.00007835969,0.00003127315,0.00026974882,0.0004880522,0.000036857506],"category_scores_gemma":[0.00048938475,0.00011276415,0.00008504513,0.00010999894,0.00024162505,0.0000041021945,0.00013261728,0.00038339442,0.0000013336187],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030647707,0.000074685275,0.0028914195,0.00004578248,0.00000979879,0.000017689918,0.000014359778,0.000003396838,0.99583673,0.0000054715433,0.000115083116,0.00067911367],"study_design_scores_gemma":[0.00081267726,0.00076113356,0.01791884,0.00006564428,0.000014120864,0.00021370665,0.00004066781,0.00006472332,0.97697663,0.000144907,0.0028113762,0.00017556878],"about_ca_topic_score_codex":0.000003955527,"about_ca_topic_score_gemma":0.0000025677016,"teacher_disagreement_score":0.018860087,"about_ca_system_score_codex":0.000012616464,"about_ca_system_score_gemma":0.00004375827,"threshold_uncertainty_score":0.45983887},"labels":[],"label_agreement":null},{"id":"W1983725277","doi":"10.1093/nar/gkr296","title":"Structural basis of cooperative DNA recognition by the plasmid conjugation factor, TraM","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Biology; Plasmid; Bacterial conjugation; DNA; Cooperativity; DNA-binding protein; Cooperative binding; Binding site; Molecular biology; Cell biology; Genetics; Biophysics; Biochemistry; Transcription factor; Gene","score_opus":0.06317978152798684,"score_gpt":0.30462561472164074,"score_spread":0.2414458331936539,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983725277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99755317,0.00011659179,0.000036007397,0.0002270025,0.0000920266,0.00025888666,0.00017390693,0.000008197153,0.0015342293],"genre_scores_gemma":[0.9990851,0.0001912634,0.00023077219,0.00004945196,0.00007283298,0.000018892199,0.00015207937,0.000015430249,0.00018417752],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989139,0.00018745889,0.0001830687,0.000257162,0.00019892894,0.0002594688],"domain_scores_gemma":[0.9992635,0.000021285648,0.00005551579,0.0002848926,0.00032721675,0.000047545018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026501963,0.000103489634,0.000110098925,0.000050716193,0.0001423329,0.000020209003,0.00030657882,0.00028738406,0.00038442787],"category_scores_gemma":[0.00013021557,0.000072649025,0.000046057565,0.00016343045,0.00048916024,0.000004574613,0.00013615027,0.0002199246,0.000021178788],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001578867,0.00003041955,0.00040845553,0.0000069510656,0.00003563335,3.7006734e-7,0.00018844,1.513631e-7,0.9772991,0.000071833034,0.0015028764,0.020297885],"study_design_scores_gemma":[0.00032180658,0.0007866685,0.004604693,0.000005830728,0.0000050560147,0.000005096548,0.00025294747,0.00003498275,0.9890929,0.00024182555,0.0045546726,0.000093521776],"about_ca_topic_score_codex":0.00007067971,"about_ca_topic_score_gemma":0.000035645382,"teacher_disagreement_score":0.020204363,"about_ca_system_score_codex":0.000013441388,"about_ca_system_score_gemma":0.00005828234,"threshold_uncertainty_score":0.42092156},"labels":[],"label_agreement":null},{"id":"W1984315376","doi":"10.1074/jbc.m011331200","title":"FtsY Binds to the Escherichia coli Inner Membrane via Interactions with Phosphatidylethanolamine and Membrane Proteins","year":2001,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Medical Research Council; Natural Sciences and Engineering Research Council of Canada; Medical Research Council Canada","keywords":"Signal recognition particle; Signal recognition particle receptor; Phosphatidylethanolamine; Protein targeting; Membrane protein; Biochemistry; Protein subunit; Escherichia coli; Membrane; Chemistry; Biology; Biophysics; Cell biology; Signal peptide; Peptide sequence; Phospholipid; Phosphatidylcholine","score_opus":0.010114740078061237,"score_gpt":0.22720817633723706,"score_spread":0.21709343625917582,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984315376","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947321,0.00041781238,0.0006638007,0.0035741667,0.00009918126,0.00015918711,0.000009086817,0.000008157922,0.00033651723],"genre_scores_gemma":[0.9959972,0.0007533719,0.0016503256,0.0005204305,0.0005381751,0.0000141895825,0.00001632871,0.000013394999,0.0004966092],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903786,0.000036271646,0.0003264709,0.00024588135,0.00011400498,0.00023949561],"domain_scores_gemma":[0.99920446,0.000019437675,0.00023117782,0.00024239674,0.00016194792,0.00014060094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021347594,0.00019446076,0.00024698913,0.0000241413,0.000087518085,0.00003369875,0.00031047515,0.00028555238,0.00009682015],"category_scores_gemma":[0.000120478566,0.00010382337,0.000075207514,0.00018857495,0.00018416002,0.000004675128,0.000154378,0.00031746874,0.000002825365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005484939,0.00009968027,0.0005134287,0.000010860061,0.00008134815,0.000019238094,0.000013267987,0.0000139877675,0.9961756,0.0000030106598,0.00016096314,0.0023601379],"study_design_scores_gemma":[0.0005014888,0.00090197,0.0015835656,0.000022272035,0.000023271894,0.00061120477,0.000051119005,0.000011355221,0.8953327,0.00001151618,0.10079391,0.00015561859],"about_ca_topic_score_codex":0.0000057050693,"about_ca_topic_score_gemma":0.000009770781,"teacher_disagreement_score":0.10084288,"about_ca_system_score_codex":0.000013942656,"about_ca_system_score_gemma":0.000045645596,"threshold_uncertainty_score":0.42337942},"labels":[],"label_agreement":null},{"id":"W1984475745","doi":"10.1186/1471-2164-10-349","title":"Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933","year":2009,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"rpoS; Biology; Virulence; Gene; Escherichia coli; Pathogenic Escherichia coli; Genetics; Mutant; Microbiology; Transcriptome; Gene expression; Promoter","score_opus":0.00645545544790106,"score_gpt":0.22749219442286459,"score_spread":0.22103673897496354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984475745","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982668,0.00042346623,0.00042404875,0.000043284588,0.00016668747,0.00032655516,0.00011545166,0.000010851195,0.00022285907],"genre_scores_gemma":[0.99411887,0.00019055269,0.0052495915,0.00012374466,0.00014605791,0.00000946924,0.00011839567,0.000014354754,0.000028958086],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988745,0.000098277385,0.00028625125,0.00037791708,0.00008113624,0.0002819115],"domain_scores_gemma":[0.9993549,0.000009031543,0.00012020585,0.00042947673,0.000024045074,0.0000623274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019524957,0.00020668721,0.00025106542,0.0000408647,0.000028034932,0.000011954052,0.00027186202,0.00044136166,0.0000071338654],"category_scores_gemma":[0.000045543507,0.00018759348,0.0001090469,0.000115646,0.000053643354,0.0000013780102,0.0000957388,0.00008869692,0.0000054020925],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049631397,0.00008826531,0.0020576138,0.00001346883,0.000008951861,0.0000028846052,0.00000812353,0.00022438087,0.99075294,0.0000387924,0.00006923165,0.006239022],"study_design_scores_gemma":[0.001091405,0.00202342,0.025653383,0.000013414441,0.00001229717,0.000005270619,0.000007471365,0.000049135386,0.96909547,0.00012287074,0.0017330664,0.00019279683],"about_ca_topic_score_codex":0.0000067090796,"about_ca_topic_score_gemma":0.000048201662,"teacher_disagreement_score":0.023595769,"about_ca_system_score_codex":0.00004089494,"about_ca_system_score_gemma":0.00008883417,"threshold_uncertainty_score":0.764984},"labels":[],"label_agreement":null},{"id":"W1984517428","doi":"10.1371/journal.pcbi.1000986","title":"Chromosome Driven Spatial Patterning of Proteins in Bacteria","year":2010,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Caulobacter crescentus; Biology; Cell division; Cell biology; Asymmetric cell division; Protein subcellular localization prediction; Chromosome segregation; Scaffold protein; Genetics; Chromosome; Chemotaxis; Cell Cycle Protein; Cell; Signal transduction; Cell cycle; Gene","score_opus":0.0082970721658987,"score_gpt":0.2286481782939712,"score_spread":0.2203511061280725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984517428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99789953,0.000017816827,0.0012849043,0.00023196165,0.00023449572,0.00018566949,0.00006320287,0.000009838397,0.00007260761],"genre_scores_gemma":[0.9907224,0.000008423911,0.008434688,0.000076928394,0.00022193253,0.000022803846,0.00049187377,0.000012120684,0.000008800013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991794,0.00004777646,0.00026196975,0.00027959197,0.000051107887,0.00018011915],"domain_scores_gemma":[0.9995949,0.000016758588,0.00011493758,0.00016156609,0.00007880722,0.000033010052],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006886128,0.0001148501,0.00017258787,0.00008373701,0.00002347146,0.000005916337,0.00019291173,0.00031916998,0.00008716456],"category_scores_gemma":[0.00006033578,0.00010972629,0.00004251289,0.000066602246,0.00016133292,0.000001735299,0.0001404299,0.000157109,0.00000874795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039386985,0.00009841843,0.02677842,0.00000971763,0.000024700124,0.0000012054402,0.000013863545,0.00010792749,0.9705628,0.0004188732,0.000008416463,0.0019362761],"study_design_scores_gemma":[0.00086519064,0.0006991304,0.118179895,0.00001385659,0.0000075679245,0.000019028954,0.0000062190056,0.0015054079,0.87470025,0.001538481,0.0022303204,0.00023464601],"about_ca_topic_score_codex":0.000044164713,"about_ca_topic_score_gemma":0.00021934294,"teacher_disagreement_score":0.09586254,"about_ca_system_score_codex":0.00000465196,"about_ca_system_score_gemma":0.00007029099,"threshold_uncertainty_score":0.44745082},"labels":[],"label_agreement":null},{"id":"W1984628925","doi":"10.1007/s00438-004-1089-2","title":"Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12","year":2004,"lang":"en","type":"article","venue":"Molecular Genetics and Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":236,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; McMaster University","funders":"Canadian Institutes of Health Research; National Institute for Health and Care Research","keywords":"rpoS; Regulon; Biology; Sigma factor; Gene; Genetics; Escherichia coli; DNA microarray; Microarray analysis techniques; Transcriptome; Operon; Gene expression; Mutant; Prophage; Promoter; RNA polymerase","score_opus":0.004731903013360119,"score_gpt":0.20285940558932145,"score_spread":0.19812750257596132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984628925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919592,0.0032378123,0.0042535006,0.00010404961,0.00008128242,0.00021351648,0.000079902165,0.0000069142043,0.00006379262],"genre_scores_gemma":[0.9820843,0.0027926045,0.014524552,0.0002122389,0.00003322883,0.000011216083,0.00029574573,0.000031598363,0.000014565266],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986558,0.00004238771,0.00040224486,0.0004909773,0.00010130654,0.0003073016],"domain_scores_gemma":[0.9992059,0.0000051650227,0.00014808831,0.00047893362,0.00006172927,0.000100185964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014108696,0.00022695494,0.00035242745,0.00024203678,0.00003880531,0.000021941956,0.00023810072,0.00041183483,0.0000061018536],"category_scores_gemma":[0.000022499804,0.0002362285,0.00013127326,0.00036502336,0.00015413923,0.0000015329086,0.00023728707,0.000110699206,0.0000013869403],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006443135,0.00009472831,0.0019494361,0.0000094948855,0.00021682812,0.000008467296,0.00007211469,0.0040096827,0.99309224,0.00003757515,0.0000055054034,0.00043949875],"study_design_scores_gemma":[0.00090751814,0.000264591,0.014007495,0.000007079713,0.00015876023,0.0000034436143,0.000033272656,0.00017521366,0.9810327,0.00016654862,0.0029777435,0.00026558485],"about_ca_topic_score_codex":0.000043840282,"about_ca_topic_score_gemma":0.00019678444,"teacher_disagreement_score":0.012059488,"about_ca_system_score_codex":0.000023611174,"about_ca_system_score_gemma":0.00009655909,"threshold_uncertainty_score":0.96331185},"labels":[],"label_agreement":null},{"id":"W1985306036","doi":"10.1016/j.str.2013.11.012","title":"Coiled-Coil Helix Rotation Selects Repressing or Activating State of Transcriptional Regulator DhaR","year":2014,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; McGill University; University of Saskatchewan; Concordia University; Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Operon; Coiled coil; Protein subunit; Biophysics; Transcription (linguistics); Cell biology; Transcription factor; Biology; Ternary complex; Chemistry; Biochemistry; Escherichia coli; Gene; Enzyme","score_opus":0.005266768417339753,"score_gpt":0.22038019014521534,"score_spread":0.2151134217278756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985306036","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99818176,0.00010485632,0.0011506963,0.000107580665,0.00018504901,0.00009996162,0.0000584516,0.000014372769,0.00009728985],"genre_scores_gemma":[0.9954122,0.000027872564,0.003919071,0.000084925305,0.00023032908,0.0000033257313,0.00013175038,0.00001823237,0.00017234498],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999196,0.000048096903,0.0002037205,0.00027830203,0.00010308391,0.00017081448],"domain_scores_gemma":[0.9994701,0.000007867105,0.00014743909,0.0002352064,0.000102964805,0.000036429534],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007416724,0.00012728726,0.00014499507,0.000034609384,0.000064257176,0.000016704564,0.00012472179,0.00021146482,0.0000445501],"category_scores_gemma":[0.00008972801,0.00010330559,0.00004540831,0.000090269554,0.00007427408,0.000003757634,0.00003560011,0.00010187611,5.432968e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017022436,0.0000083560135,0.00017681377,0.000031788753,0.000026795262,3.0469775e-7,0.00004578915,0.00012535052,0.96681106,0.00008923044,0.00008203808,0.032432273],"study_design_scores_gemma":[0.00041906195,0.0002336501,0.009514083,0.00002107033,0.000009573394,0.000015403337,0.000014865392,0.0001633795,0.9808274,0.00079851545,0.007850466,0.00013251122],"about_ca_topic_score_codex":0.000007213823,"about_ca_topic_score_gemma":0.000036002813,"teacher_disagreement_score":0.03229976,"about_ca_system_score_codex":0.000007084046,"about_ca_system_score_gemma":0.00005819652,"threshold_uncertainty_score":0.42126796},"labels":[],"label_agreement":null},{"id":"W1985572646","doi":"10.1016/j.bbamem.2007.07.005","title":"Bringing order to a complex molecular machine: The assembly of the bacterial flagella","year":2007,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Flagellum; Biology; Salmonella enterica; Protein filament; Cell biology; Computational biology; Gene; Escherichia coli; Genetics","score_opus":0.028736911945641683,"score_gpt":0.30845357719207733,"score_spread":0.2797166652464356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985572646","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.53946376,0.45056823,0.00007585617,0.0021326279,0.00206887,0.0033759144,0.0016656074,0.00009922793,0.00054991385],"genre_scores_gemma":[0.1285383,0.8663767,0.00066728593,0.00092582265,0.0012568383,0.00011349369,0.0014585811,0.000300768,0.000362207],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99626094,0.0004050165,0.0010344908,0.001110273,0.00041138288,0.00077787327],"domain_scores_gemma":[0.9967448,0.00007645012,0.00078664924,0.0020082924,0.00022493822,0.0001588392],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00046184563,0.000975498,0.0014204725,0.0002690577,0.00022407853,0.0001462944,0.0024010974,0.0010774115,0.000029229825],"category_scores_gemma":[0.00014146256,0.00058872724,0.00094801956,0.001555723,0.0005608274,0.000005353793,0.0016026683,0.00047898263,0.000023773595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006874177,0.00011708534,6.379837e-8,0.0012076887,0.00042280232,0.0000033186086,0.000026037917,6.623304e-7,0.96329343,0.00005562291,0.00067067036,0.03413388],"study_design_scores_gemma":[0.0001886218,0.00016557625,0.000017341232,0.00048004292,0.00031734994,0.000038002465,0.000006970906,0.0000035474554,0.49922743,0.0000047816243,0.49907494,0.00047537097],"about_ca_topic_score_codex":0.00006808296,"about_ca_topic_score_gemma":0.000034364988,"teacher_disagreement_score":0.49840426,"about_ca_system_score_codex":0.00003510362,"about_ca_system_score_gemma":0.00040252937,"threshold_uncertainty_score":0.99965644},"labels":[],"label_agreement":null},{"id":"W1985626817","doi":"10.1111/j.1574-6968.2000.tb09277.x","title":"Expression of the<i>tetA</i>(C) tetracycline efflux pump in<i>Escherichia coli</i>confers osmotic sensitivity","year":2000,"lang":"he","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Robarts Clinical Trials; Western University","funders":"","keywords":"Tetracycline; Escherichia coli; Efflux; Osmotic shock; Aminoglycoside; Biology; Microbiology; Chemistry; Biochemistry; Antibiotics; Gene","score_opus":0.005083818710502302,"score_gpt":0.19643343661124674,"score_spread":0.19134961790074442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985626817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906872,0.00068238284,0.00003760125,0.0062348684,0.0012610595,0.00063014845,0.0002791545,0.00001630191,0.00017128758],"genre_scores_gemma":[0.9932326,0.0007909212,0.00033175992,0.0045515387,0.0003300081,0.000012204927,0.00019047018,0.00005627915,0.00050422363],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99645865,0.00075222977,0.00083846546,0.0009817962,0.00008612076,0.0008827367],"domain_scores_gemma":[0.9983117,0.00006826083,0.00035595178,0.0010987403,0.000067442525,0.0000978764],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00045998965,0.00057003385,0.0007265972,0.000110765744,0.00014103438,0.000024955336,0.0006347118,0.0013808894,0.00032280036],"category_scores_gemma":[0.000078993,0.00046973285,0.00035829033,0.00034192958,0.0017187198,0.000006977088,0.00037067808,0.00071917806,0.00009124684],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027789208,0.00025820165,0.0050989375,0.00005747998,0.00009119202,0.000018603483,0.00007882468,0.00020714276,0.9907901,0.000004847074,0.0017541957,0.0013625271],"study_design_scores_gemma":[0.0014488838,0.00026529087,0.014426065,0.00013477342,0.00006666337,0.0000853019,0.000039011542,0.000018343577,0.9399862,0.0000072424614,0.043042116,0.0004801113],"about_ca_topic_score_codex":0.00020404393,"about_ca_topic_score_gemma":0.00028779788,"teacher_disagreement_score":0.050803956,"about_ca_system_score_codex":0.000054805354,"about_ca_system_score_gemma":0.00015142869,"threshold_uncertainty_score":0.99991554},"labels":[],"label_agreement":null},{"id":"W1985722898","doi":"10.1007/s10534-013-9695-2","title":"Demonstration of the functional role of conserved Glu-Arg residues in the Staphylococcus aureus ferrichrome transporter","year":2013,"lang":"en","type":"article","venue":"BioMetals","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Brandenburgische Technische Universität Cottbus-Senftenberg","keywords":"Ferrichrome; Permease; Biochemistry; ATP-binding cassette transporter; Transporter; Transmembrane domain; Conserved sequence; Alanine; Biology; Transmembrane protein; Major facilitator superfamily; Membrane transport protein; Peptide sequence; Escherichia coli; Chemistry; Amino acid; Gene; Bacterial outer membrane; Receptor","score_opus":0.010539756808166005,"score_gpt":0.20698412596920424,"score_spread":0.19644436916103822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985722898","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979845,0.0008017242,0.00004081311,0.0005019232,0.00007984822,0.0002924439,0.00004398973,0.000002866229,0.0002518543],"genre_scores_gemma":[0.9994937,0.00007621556,0.00015876917,0.00008589075,0.000046107405,0.000026119362,0.00004449568,0.0000058105156,0.00006288989],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992549,0.00007928373,0.0002772602,0.0001521224,0.000113822374,0.00012260047],"domain_scores_gemma":[0.9994524,0.000011257507,0.00012881879,0.0003159826,0.00007705135,0.000014497902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017329802,0.0000917376,0.0001296508,0.00005908069,0.000023143788,0.0000088092065,0.0002485376,0.0001899885,0.00006110422],"category_scores_gemma":[0.000013970786,0.000053072155,0.000091024885,0.00022286623,0.0002140214,0.000003004966,0.00003491313,0.00005333555,0.0000028429001],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022067947,0.000062411855,0.013096456,0.000008542532,0.00003108052,1.3166726e-7,0.000023704453,0.0000030640936,0.9853552,0.00015415599,0.0002513386,0.000991831],"study_design_scores_gemma":[0.00017788564,0.00011380373,0.33897492,0.0000046142422,0.000011738695,0.000001582757,0.00008584195,0.0000034624588,0.6573709,0.00020899244,0.0029977865,0.000048412945],"about_ca_topic_score_codex":0.0001745116,"about_ca_topic_score_gemma":0.00020820323,"teacher_disagreement_score":0.32798427,"about_ca_system_score_codex":0.000003162236,"about_ca_system_score_gemma":0.000048334325,"threshold_uncertainty_score":0.21642198},"labels":[],"label_agreement":null},{"id":"W1986397334","doi":"10.1186/1759-8753-3-7","title":"Identification of basepairs within Tn5 termini that are critical sfor H-NS binding to the transpososome and regulation of Tn5 transposition","year":2012,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Transposable element; Transposase; Transposition (logic); Biology; Genetics; Gene; P element; Tn10; Context (archaeology); Mutant; Molecular biology","score_opus":0.009924974927119034,"score_gpt":0.24522046740752565,"score_spread":0.23529549248040663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986397334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770135,0.0002389959,0.0009910364,0.00039937263,0.00018644027,0.00031286327,0.00015054848,0.0000070247615,0.000012372779],"genre_scores_gemma":[0.999411,0.000049790946,0.00023006434,0.000038331433,0.00008811314,0.00004641513,0.00008211167,0.000011153574,0.000043004406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999327,0.000042666645,0.00024043593,0.000165297,0.000083724466,0.00014085168],"domain_scores_gemma":[0.9995653,0.000013102349,0.00009987445,0.000227754,0.000048511967,0.000045425837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022628599,0.00008904966,0.00011820239,0.0000473484,0.000051156603,0.000008440697,0.000099555014,0.00017449888,0.000008698202],"category_scores_gemma":[0.00002314949,0.0000710274,0.000050072777,0.00007883189,0.00012176216,0.0000072494054,0.000020114509,0.00004426902,0.0000014987578],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059846123,0.000057625046,0.0023531602,0.000051678137,0.000013147633,1.0193701e-7,0.00022024057,0.000016647089,0.99554473,0.00018304173,0.000025332609,0.0014744217],"study_design_scores_gemma":[0.00014618815,0.0002179187,0.045264557,0.000025736113,0.000037145233,0.0000057368234,0.00019608445,0.00004311239,0.9529178,0.0000312775,0.0010331956,0.00008124502],"about_ca_topic_score_codex":0.0000045467687,"about_ca_topic_score_gemma":0.000015487287,"teacher_disagreement_score":0.042911395,"about_ca_system_score_codex":0.0000051492316,"about_ca_system_score_gemma":0.000011382384,"threshold_uncertainty_score":0.28964135},"labels":[],"label_agreement":null},{"id":"W1986665696","doi":"10.1016/j.bbamem.2014.08.008","title":"The periplasmic domain of Escherichia coli outer membrane protein A can undergo a localized temperature dependent structural transition","year":2014,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Alberta Innovates - Health Solutions","keywords":"Periplasmic space; Bacterial outer membrane; Transmembrane domain; Transmembrane protein; Biophysics; Escherichia coli; Protein structure; Outer membrane efflux proteins; Inner membrane; Chemistry; Crystallography; Biochemistry; Biology; Membrane","score_opus":0.004572870272767011,"score_gpt":0.209490173702791,"score_spread":0.20491730343002398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986665696","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930915,0.00012799198,0.000047424193,0.005362616,0.0003130619,0.00072879257,0.00021454746,0.00005043361,0.0000635871],"genre_scores_gemma":[0.99762636,0.00022824676,0.0006739687,0.0004373825,0.00032730337,0.00007615457,0.00040367403,0.00006477418,0.00016214016],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975742,0.00032051656,0.0005388456,0.00072019256,0.00030075136,0.0005454773],"domain_scores_gemma":[0.9985389,0.00003071984,0.0003118926,0.00081757933,0.00016660844,0.00013428788],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002769095,0.0004950049,0.00046961266,0.000100056546,0.0002902024,0.00013408306,0.00066955213,0.0006288452,0.000011646272],"category_scores_gemma":[0.000045085973,0.00035262792,0.00024982417,0.0003186367,0.00065871957,0.000010361962,0.00018087828,0.00027188376,0.0000042983675],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073817914,0.00008671604,7.734421e-7,0.000103809805,0.00019021769,0.0000016910519,0.00018837822,0.0000079942465,0.9979927,0.0003454673,0.00007648263,0.00026759357],"study_design_scores_gemma":[0.0014378688,0.0007619028,0.00024410398,0.000043538093,0.000061654646,0.000021919526,0.00015885386,0.00012474631,0.9933155,0.00035972527,0.0029980186,0.00047216407],"about_ca_topic_score_codex":0.00008841764,"about_ca_topic_score_gemma":0.0002488623,"teacher_disagreement_score":0.0049252333,"about_ca_system_score_codex":0.000025239675,"about_ca_system_score_gemma":0.00016889787,"threshold_uncertainty_score":0.9998926},"labels":[],"label_agreement":null},{"id":"W1987028999","doi":"10.1016/j.resmic.2004.07.009","title":"A conserved polar region in the cell division site determinant MinD is required for responding to MinE-induced oscillation but not for localization within coiled arrays","year":2004,"lang":"en","type":"article","venue":"Research in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Biology; Mutant; Cell division; Green fluorescent protein; Mutation; Cell biology; Conserved sequence; Escherichia coli; Cell; Genetics; Peptide sequence; Gene","score_opus":0.06152210429170942,"score_gpt":0.3407179883173657,"score_spread":0.2791958840256563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987028999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895118,0.000085061416,0.00575133,0.0025822439,0.00013659948,0.0017994152,0.00011973547,0.0000043889568,0.000009422573],"genre_scores_gemma":[0.99658203,0.000049213668,0.0021484322,0.0004299298,0.00009383094,0.00017456454,0.000395474,0.000023208266,0.000103288156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979744,0.0003445713,0.00042037884,0.00060635386,0.00007682668,0.00057745614],"domain_scores_gemma":[0.99909174,0.00013608768,0.00010926655,0.00040215917,0.00020974524,0.00005098133],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017958218,0.00016747753,0.0002249311,0.0005344539,0.00015586351,0.000037780654,0.00034925688,0.00059618003,0.0000014105458],"category_scores_gemma":[0.00042575874,0.00013574657,0.000070277645,0.00054765714,0.00013691884,0.000005383999,0.00014962831,0.00017852343,0.0000053234025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012714426,0.000066041895,0.0006432815,0.00003953677,0.0000058662636,0.0000061256737,0.0003913905,0.00013239277,0.9967422,0.000060757535,0.00015541723,0.00048558367],"study_design_scores_gemma":[0.0021595752,0.0019316599,0.0003955014,0.000066962035,0.0000046506975,0.000024969992,0.00020497142,0.00026506497,0.98564917,0.00024657618,0.008874741,0.00017617477],"about_ca_topic_score_codex":0.00014087516,"about_ca_topic_score_gemma":0.0010013846,"teacher_disagreement_score":0.011093011,"about_ca_system_score_codex":0.000096902004,"about_ca_system_score_gemma":0.0001838248,"threshold_uncertainty_score":0.5535584},"labels":[],"label_agreement":null},{"id":"W1987100788","doi":"10.1002/cbic.201402322","title":"A Dual Reporter System for Detecting RNA Interactions in Bacterial Cells","year":2014,"lang":"en","type":"article","venue":"ChemBioChem","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"RNA; Reporter gene; Escherichia coli; Biology; Gene; Cell biology; Riboswitch; Yellow fluorescent protein; Green fluorescent protein; Bimolecular fluorescence complementation; Computational biology; Gene expression; Chemistry; Genetics; Non-coding RNA","score_opus":0.01027010241558267,"score_gpt":0.23565702631007723,"score_spread":0.22538692389449455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987100788","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968124,0.000025278441,0.00096941245,0.00009331025,0.0010828535,0.0002449266,0.00001269014,0.000049974107,0.0007091576],"genre_scores_gemma":[0.99699295,0.0000057783823,0.0015362751,0.00004875066,0.0009842354,0.000076695396,0.00008165697,0.000040023824,0.00023362508],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988957,0.000024444593,0.00032361926,0.00041881145,0.000050888357,0.00028652197],"domain_scores_gemma":[0.9993542,0.000015531468,0.00013849672,0.0003724682,0.00006411918,0.000055199434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023086581,0.0001615643,0.0001873101,0.000056006862,0.00004558749,0.000033949487,0.00013307972,0.00023229948,0.000006382832],"category_scores_gemma":[0.000097456825,0.00016305494,0.00009970599,0.000072846015,0.000044138404,0.00000258877,0.00011059421,0.00008723045,0.000004222514],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009769125,0.000031967436,0.000043690667,0.00004486911,0.000018728057,0.0000013775071,0.0000161793,0.0000019096137,0.996767,0.00003164194,0.00039150668,0.0025534397],"study_design_scores_gemma":[0.0006812002,0.00015576635,0.00009968145,0.0000244765,0.000012264151,0.000037786172,0.000069166366,0.000098463475,0.950895,0.000015586587,0.04772274,0.00018787611],"about_ca_topic_score_codex":0.000013330989,"about_ca_topic_score_gemma":0.00006952399,"teacher_disagreement_score":0.04733123,"about_ca_system_score_codex":0.000029802075,"about_ca_system_score_gemma":0.000032838652,"threshold_uncertainty_score":0.6649187},"labels":[],"label_agreement":null},{"id":"W1987218857","doi":"10.1038/nsmb0208-121","title":"Stop and go: regulation of chain length in the biosynthesis of bacterial polysaccharides","year":2008,"lang":"en","type":"letter","venue":"Nature Structural & Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Polysaccharide; Biosynthesis; Virulence; Chain (unit); Biology; Biochemistry; Gene; Cell biology; Chemistry","score_opus":0.004389896919858539,"score_gpt":0.23776569394364772,"score_spread":0.2333757970237892,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987218857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9630033,0.00388416,0.000026032909,0.03182493,0.00051307154,0.00039991716,0.00029839005,0.0000071217814,0.000043124997],"genre_scores_gemma":[0.9814891,0.0007031812,0.00051551254,0.015162297,0.0008168807,0.000011301078,0.001240676,0.000035428504,0.000025613093],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99803656,0.00034951398,0.00050805946,0.0006036487,0.00014909977,0.00035312868],"domain_scores_gemma":[0.99875844,0.000038204493,0.00043995792,0.0006282949,0.00011275781,0.000022351625],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001685319,0.0003892134,0.0005944595,0.00021091866,0.000042746535,0.000009950069,0.00058567704,0.00414923,0.000018448009],"category_scores_gemma":[0.00016502077,0.00027597687,0.0001785424,0.00018177822,0.0006265026,0.000002575623,0.0002086755,0.0010770182,3.2136515e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010411698,0.00000728701,0.00012628826,0.000051924715,0.00009907243,0.000014261514,0.00003788831,9.1255026e-7,0.9914975,0.00034388946,0.0049330257,0.0027838042],"study_design_scores_gemma":[0.00052230933,0.00059563125,0.0052832956,0.000033078795,0.00006797013,0.00018638703,0.000018523591,0.000007091323,0.926353,0.001163188,0.06538739,0.0003821523],"about_ca_topic_score_codex":0.000058025293,"about_ca_topic_score_gemma":0.00002663893,"teacher_disagreement_score":0.06514455,"about_ca_system_score_codex":0.000012767444,"about_ca_system_score_gemma":0.000088424546,"threshold_uncertainty_score":0.99996924},"labels":[],"label_agreement":null},{"id":"W1987451188","doi":"10.1128/jb.01534-10","title":"Characterization of the Induction and Cellular Role of the BaeSR Two-Component Envelope Stress Response of Escherichia coli","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Cell envelope; Biology; Biofilm; Response regulator; Escherichia coli; Indole test; Regulon; Efflux; Cell biology; Mutant; Microbiology; Biochemistry; Genetics; Gene; Bacteria","score_opus":0.009083776351807541,"score_gpt":0.19837150491489122,"score_spread":0.18928772856308368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987451188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990899,0.00013439356,0.000042425534,0.00013811588,0.0004371639,0.00011262784,0.00002857175,8.896215e-7,0.000015906962],"genre_scores_gemma":[0.99944186,0.00017153293,0.00024895964,0.000026647427,0.0000787946,0.0000013019267,0.0000055399455,0.000008910338,0.000016461121],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988939,0.00031085638,0.0005056552,0.00011069504,0.00007398316,0.00010491257],"domain_scores_gemma":[0.9985053,0.000010990704,0.0010021636,0.00026753757,0.00018747979,0.0000265451],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033263967,0.00010122562,0.00025649476,0.00005200353,0.000030927342,0.0000027600468,0.0002995663,0.00023565548,0.00001554798],"category_scores_gemma":[0.00007335634,0.00006178331,0.00010016614,0.00008955207,0.0003311827,0.000005001473,0.00019910626,0.00013530481,1.1487548e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010054476,0.00007945762,0.0111679705,0.000014624838,0.00006561063,3.3161743e-7,0.00016744151,0.0000016191475,0.9868297,0.000043495038,0.0000020339737,0.00062226254],"study_design_scores_gemma":[0.0002701413,0.00042863056,0.33796608,0.000021329544,0.000025276931,0.00002089172,0.000052803396,0.0000020701798,0.6605451,0.00003710574,0.00059149327,0.000039034032],"about_ca_topic_score_codex":0.000020479525,"about_ca_topic_score_gemma":0.000006632899,"teacher_disagreement_score":0.32679814,"about_ca_system_score_codex":0.0000069700463,"about_ca_system_score_gemma":0.00009845326,"threshold_uncertainty_score":0.25194502},"labels":[],"label_agreement":null},{"id":"W1988395729","doi":"10.1371/journal.pone.0101787","title":"Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; Structural Genomics Consortium","funders":"Pacific Northwest National Laboratory; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; U.S. Department of Energy","keywords":"Biology; Salmonella; Multiple sequence alignment; Cysteine; Peptide sequence; Sequence alignment; Protein domain; Dimer; Function (biology); Protein structure; Biochemistry; Genetics; Gene; Chemistry; Bacteria; Enzyme","score_opus":0.01198025738919574,"score_gpt":0.18045947096284917,"score_spread":0.16847921357365342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988395729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99928886,0.00008731146,0.00019349642,0.00013937868,0.000028155355,0.00016655639,0.000040403407,0.0000052157525,0.000050636045],"genre_scores_gemma":[0.99835956,0.00020720235,0.0010761019,0.000028918801,0.000117092895,0.0000066292873,0.00012231735,0.000009674924,0.00007249508],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994481,0.000026098029,0.00016438888,0.00018547644,0.00008032286,0.000095572635],"domain_scores_gemma":[0.9996225,0.0000046937016,0.00011304402,0.00015116499,0.00007568645,0.000032876385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065271226,0.00008707441,0.00015952656,0.00003390799,0.000029228207,0.000006582233,0.000047379246,0.00016972017,0.000011247542],"category_scores_gemma":[0.00003681858,0.00007954763,0.00001826758,0.000039612016,0.00014615286,0.0000024014626,0.00008637634,0.00004489244,3.6809436e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000081401595,0.00007235235,0.006511358,0.00007586537,0.00006227883,8.021993e-8,0.0000116257825,2.803842e-7,0.991846,0.00026788263,0.0000017627292,0.0010691097],"study_design_scores_gemma":[0.00036726845,0.00044684825,0.116134316,0.000020451282,0.00003062979,0.0000031138393,0.0000041466774,0.00009428131,0.8825042,0.00012895328,0.00018597853,0.000079799305],"about_ca_topic_score_codex":0.0000059793706,"about_ca_topic_score_gemma":0.0000058769606,"teacher_disagreement_score":0.10962296,"about_ca_system_score_codex":0.0000019701038,"about_ca_system_score_gemma":0.0000131877005,"threshold_uncertainty_score":0.32438582},"labels":[],"label_agreement":null},{"id":"W1988463834","doi":"10.1111/j.1574-6968.2006.00293.x","title":"Involvement of two related porins, OprD and OpdP, in the uptake of arginine by<i>Pseudomonas aeruginosa</i>","year":2006,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Porin; Subfamily; Biology; Pseudomonas aeruginosa; Amino acid; Peptide sequence; Biochemistry; Genetics; Phylogenetic tree; Gene; Bacteria; Escherichia coli; Bacterial outer membrane","score_opus":0.004206319734230155,"score_gpt":0.19493060313724458,"score_spread":0.19072428340301442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988463834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99576604,0.0015745236,0.00002380162,0.002064002,0.00017921113,0.00021127281,0.00009795718,0.0000052735195,0.00007789487],"genre_scores_gemma":[0.9977504,0.00023907206,0.0004435817,0.0009372009,0.000050504517,0.000010300529,0.00050185126,0.000011850607,0.000055262033],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988876,0.00007638069,0.00044770545,0.0003081031,0.000033908076,0.00024629603],"domain_scores_gemma":[0.9994465,0.000012307624,0.0001903632,0.00030904784,0.000026009187,0.000015755617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025240058,0.00016429293,0.00024183554,0.00006419942,0.000025365433,0.000004847739,0.0002717616,0.00025094827,0.00000660322],"category_scores_gemma":[0.000009070233,0.00012626412,0.000058124846,0.000115322255,0.0004175667,0.0000017443139,0.00012338167,0.00013419654,0.000001160863],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042214557,0.000084030726,0.0056508593,0.0000105216905,0.00003592378,0.0000034164377,0.0000320054,0.000011919759,0.98786587,0.00017793385,0.005658931,0.0004263821],"study_design_scores_gemma":[0.0013451542,0.00025740062,0.0065855044,0.000013048528,0.000018687506,0.00005222075,0.000041759406,0.0000015869564,0.94499767,0.00006752532,0.046466548,0.00015291439],"about_ca_topic_score_codex":0.00022219834,"about_ca_topic_score_gemma":0.00010381962,"teacher_disagreement_score":0.042868212,"about_ca_system_score_codex":0.000006761757,"about_ca_system_score_gemma":0.00001963584,"threshold_uncertainty_score":0.51489013},"labels":[],"label_agreement":null},{"id":"W1988466378","doi":"10.1016/j.bbamem.2008.08.008","title":"Structural proteomics of the cell envelope of Gram-negative bacteria","year":2008,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Gram; Cell envelope; Gram-negative bacteria; Proteomics; Bacteria; Envelope (radar); Microbiology; Biology; Computational biology; Computer science; Genetics; Escherichia coli; Gene","score_opus":0.011202620397150202,"score_gpt":0.21463738828164888,"score_spread":0.20343476788449869,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988466378","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99799466,0.000069714835,0.0000050490657,0.0005682202,0.00035044784,0.0005168317,0.0003262658,0.000018790515,0.00014999419],"genre_scores_gemma":[0.9972526,0.0004406927,0.0016722757,0.00010397227,0.00016899784,0.000018296523,0.00012261039,0.000041279047,0.00017930644],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983095,0.00012305994,0.0005131889,0.0005024701,0.0002089131,0.00034290354],"domain_scores_gemma":[0.99840105,0.000021267235,0.0005305671,0.0008030394,0.00017269822,0.00007137511],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009253811,0.0003544915,0.0004240392,0.00009410274,0.00013033554,0.00001568821,0.0008031957,0.00042230607,0.00001691657],"category_scores_gemma":[0.000050255185,0.0002526985,0.0002841587,0.00039808964,0.0010780067,0.000008758414,0.00045292478,0.00016257043,0.0000034054704],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023004672,0.00011618224,0.000044596494,0.000087048626,0.000091875845,7.203373e-7,0.00017832173,0.0000017762133,0.99898386,0.000040161063,0.00013608161,0.000089346526],"study_design_scores_gemma":[0.00065264455,0.00043904406,0.017797671,0.000023457957,0.00003858771,0.000021375694,0.000042426494,0.000011646388,0.9800937,0.00009466471,0.00047809252,0.00030664523],"about_ca_topic_score_codex":0.000063864136,"about_ca_topic_score_gemma":0.000010578661,"teacher_disagreement_score":0.0188901,"about_ca_system_score_codex":0.000011267838,"about_ca_system_score_gemma":0.00019959542,"threshold_uncertainty_score":0.99999255},"labels":[],"label_agreement":null},{"id":"W1988539074","doi":"10.1007/s002849910033","title":"Construction of a Promoter-Rescue Plasmid for Butyrivibrio fibrisolvens and Its Use in Characterization of a Flagellin Promoter","year":2000,"lang":"en","type":"article","venue":"Current Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lethbridge College; University of Lethbridge; Statistics Canada; Health Canada","funders":"","keywords":"Promoter; Biology; Plasmid; Gene; Flagellin; Transcription (linguistics); Genetics; Mutant; Shuttle vector; Molecular biology; Gene expression; Vector (molecular biology); Recombinant DNA","score_opus":0.013211384437848401,"score_gpt":0.23059979452539986,"score_spread":0.21738841008755147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988539074","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982968,0.00024412971,0.00019217198,0.00008024114,0.00017941235,0.0005168204,0.00048329812,0.000004976899,0.000002133575],"genre_scores_gemma":[0.9976242,0.0006889928,0.0007225439,0.000010986453,0.000058930556,0.000022221844,0.00082310644,0.00001218354,0.000036802136],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911106,0.000048168073,0.00033842673,0.00030181144,0.00001602287,0.00018450165],"domain_scores_gemma":[0.99962586,0.000006825132,0.000119440505,0.00014709667,0.00007752252,0.00002325553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007680755,0.00013004895,0.0002358722,0.00007593842,0.000016377244,0.0000059324134,0.00008765057,0.00029375005,0.000021281694],"category_scores_gemma":[0.000027028816,0.00012419772,0.000051769915,0.0000647287,0.00014956217,0.0000052028017,0.00005141797,0.00006527505,0.0000010932712],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022867648,0.00008769223,0.0009836113,0.00009908179,0.000017927476,1.7365798e-7,0.000031394444,0.0000017345669,0.9833667,0.000035955178,0.000012108143,0.015134938],"study_design_scores_gemma":[0.0007663538,0.00054950133,0.0025084328,0.000053222237,0.000013749751,0.0000350188,0.0000026442585,0.000069981885,0.9729175,0.000022954637,0.022937587,0.00012303889],"about_ca_topic_score_codex":0.0000034945822,"about_ca_topic_score_gemma":0.00002620192,"teacher_disagreement_score":0.02292548,"about_ca_system_score_codex":0.0000053034846,"about_ca_system_score_gemma":0.000035143217,"threshold_uncertainty_score":0.5064636},"labels":[],"label_agreement":null},{"id":"W1988679341","doi":"10.1111/j.1365-2958.2009.06630.x","title":"CtrA response regulator binding to the <i>Caulobacter</i> chromosome replication origin is required during nutrient and antibiotic stress as well as during cell cycle progression","year":2009,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Caulobacter crescentus; Biology; Cell cycle; Genetics; Cell division; DNA replication; Response regulator; Regulator; Origin of replication; Cell biology; Cell; Gene; Mutant","score_opus":0.003423876692619043,"score_gpt":0.23138439791920307,"score_spread":0.22796052122658403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988679341","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99471134,0.00086442416,0.00003065355,0.003319933,0.00016553389,0.00071004377,0.00006181206,0.000046321325,0.000089930225],"genre_scores_gemma":[0.997632,0.00027458963,0.00036995063,0.0008653076,0.00012212188,0.000015223418,0.00015070128,0.000037243077,0.00053282006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977242,0.00021055645,0.0003668994,0.0010488166,0.00007831593,0.0005712375],"domain_scores_gemma":[0.99847424,0.000008967141,0.0001886803,0.0011156927,0.00007383665,0.00013855782],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00026530662,0.00032806623,0.0002665212,0.00012520558,0.00026214521,0.00006643596,0.00042565237,0.00053624227,0.000022216023],"category_scores_gemma":[0.000063259766,0.00027191223,0.000099629084,0.00023515856,0.00014972746,0.000006505832,0.00033070002,0.00018696948,0.00010546237],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009512254,0.00010221123,0.000183815,0.000026163703,0.000028219356,0.000036797424,0.000060102615,0.000008321997,0.9981042,0.00001959139,0.00017495215,0.0003043694],"study_design_scores_gemma":[0.0008402084,0.0010094324,0.0027530633,0.00006028592,0.000026366133,0.00038144196,0.000032507112,0.0000023961,0.9707353,0.000031826654,0.023793451,0.00033368418],"about_ca_topic_score_codex":0.000006609032,"about_ca_topic_score_gemma":0.000002787151,"teacher_disagreement_score":0.027368894,"about_ca_system_score_codex":0.000049328348,"about_ca_system_score_gemma":0.00006083523,"threshold_uncertainty_score":0.9999733},"labels":[],"label_agreement":null},{"id":"W1988717852","doi":"10.1038/emboj.2013.34","title":"ParA‐mediated plasmid partition driven by protein pattern self‐organization","year":2013,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":179,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research; National Institutes of Health; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Biology; Plasmid; Escherichia coli Proteins; Computational biology; Genetics; Bacterial protein; Cell biology; Gene","score_opus":0.0044352121197489625,"score_gpt":0.18971365676343352,"score_spread":0.18527844464368456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988717852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950404,0.00010281015,0.0012856784,0.0031157883,0.00014925486,0.00021837681,0.0000109180255,0.000020261063,0.000056504476],"genre_scores_gemma":[0.99854517,0.00022539818,0.00017945227,0.0003813703,0.00035426242,0.000015424988,0.00011879783,0.000019741625,0.00016040451],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929553,0.00007688791,0.00018762269,0.00013686942,0.00009588664,0.0002072248],"domain_scores_gemma":[0.99949574,0.0000040996224,0.00013060363,0.0001774852,0.00012724394,0.00006479531],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010736124,0.00010885231,0.00008260878,0.00002054918,0.00015683059,0.000084315165,0.00022774901,0.00016106191,0.0002367447],"category_scores_gemma":[0.000040713494,0.000074283256,0.000033665594,0.00008143545,0.000052526146,0.0000052716605,0.000073814255,0.00017219418,0.00013299346],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000054129514,0.000038693615,0.0010840205,0.0000023250725,0.00003455169,9.051483e-7,0.000026303325,0.0000047868293,0.98713344,0.0000042603438,0.0103565985,0.0013086756],"study_design_scores_gemma":[0.00045967466,0.0003005916,0.005287833,0.0000107490405,0.0000173579,0.00012586208,0.000040171075,0.00013067837,0.97022057,0.00018084866,0.02305879,0.00016686264],"about_ca_topic_score_codex":0.000009305886,"about_ca_topic_score_gemma":0.0000044421245,"teacher_disagreement_score":0.016912885,"about_ca_system_score_codex":0.000012030121,"about_ca_system_score_gemma":0.00003552316,"threshold_uncertainty_score":0.30291831},"labels":[],"label_agreement":null},{"id":"W1988753673","doi":"10.1016/j.jmb.2008.08.027","title":"CRP Binding and Transcription Activation at CRP-S Sites","year":2008,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; University of British Columbia","keywords":"Promoter; Binding site; Consensus sequence; Biology; Haemophilus influenzae; DNA binding site; Base pair; Transcription (linguistics); Molecular biology; DNA; Conserved sequence; DNA-binding protein; Transcription factor; Genetics; Gene; Base sequence; Gene expression; Bacteria","score_opus":0.01293047233406559,"score_gpt":0.24170936281164254,"score_spread":0.22877889047757696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988753673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99480647,0.0011043369,0.0032056982,0.00055633474,0.00017468282,0.00006683278,0.000006356417,0.000004729569,0.00007458465],"genre_scores_gemma":[0.99621737,0.0013883822,0.0018572946,0.00022418151,0.00017506635,0.000001557681,0.00004169585,0.000014059952,0.00008038246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991962,0.00007842402,0.00028922167,0.00018976063,0.00006561683,0.00018079698],"domain_scores_gemma":[0.99945414,0.000007645494,0.00022594772,0.00013786195,0.00010852296,0.00006585299],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014909598,0.00012960465,0.0001912507,0.00011579024,0.00008826006,0.000007432454,0.00012942887,0.00036282322,0.000015854814],"category_scores_gemma":[0.00007075129,0.00011068235,0.00009816173,0.00007105509,0.00017113017,0.000004150291,0.000072713825,0.00012563265,0.0000025256588],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015361077,0.000029943212,0.0027293423,0.000005366561,0.00006110224,0.000014826468,0.000022570759,0.000004667276,0.99522394,0.00008953077,0.00022712535,0.0014379543],"study_design_scores_gemma":[0.0006143715,0.0010090793,0.0029582328,0.000007725834,0.0000204593,0.00076724176,0.000013134954,0.000004681833,0.9773067,0.00017429503,0.016998924,0.00012515024],"about_ca_topic_score_codex":0.0000027105448,"about_ca_topic_score_gemma":0.0000035353496,"teacher_disagreement_score":0.017917259,"about_ca_system_score_codex":0.00001811404,"about_ca_system_score_gemma":0.00004004605,"threshold_uncertainty_score":0.4513495},"labels":[],"label_agreement":null},{"id":"W1988775133","doi":"10.1074/jbc.m110.107086","title":"O-Acetylation of Peptidoglycan in Gram-negative Bacteria","year":2010,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Peptidoglycan; Periplasmic space; Biology; Escherichia coli; Biochemistry; Neisseria gonorrhoeae; Molecular biology; Esterase; Signal peptide; Gene; Peptide sequence; Enzyme; Microbiology","score_opus":0.01073474266888663,"score_gpt":0.2403664136490161,"score_spread":0.22963167098012946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988775133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992093,0.00006245015,0.000029995754,0.00015061113,0.00017174809,0.000044474855,0.000012345306,0.0000024588032,0.00031665218],"genre_scores_gemma":[0.9969943,0.0001578801,0.0024435797,0.0000259286,0.00031487964,0.0000013980465,0.000017319235,0.0000061184937,0.000038552334],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991714,0.000025391257,0.00043082685,0.00015016121,0.000072964925,0.00014926004],"domain_scores_gemma":[0.9992555,0.000016670097,0.00037075632,0.00016117014,0.0001358675,0.00006007639],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024116867,0.00011464276,0.0002321331,0.000028725563,0.000015367894,0.0000074704362,0.000242223,0.00051973306,0.00010683128],"category_scores_gemma":[0.0003200479,0.00008460339,0.00010857255,0.00008801617,0.00019544436,0.000002654165,0.00008219477,0.0003121377,7.516978e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019647292,0.00008614794,0.006068122,0.000010075351,0.000017401382,0.0000036025315,0.000010844262,0.000002258566,0.99201983,0.000010512256,0.0000475952,0.0015271574],"study_design_scores_gemma":[0.0005076223,0.0003704369,0.02224407,0.000011382258,0.0000050527588,0.00007189039,0.000044530585,0.0000030957417,0.9731293,0.00027835908,0.0032366738,0.00009763702],"about_ca_topic_score_codex":0.000004175234,"about_ca_topic_score_gemma":0.000010126606,"teacher_disagreement_score":0.018890562,"about_ca_system_score_codex":0.000007242737,"about_ca_system_score_gemma":0.000063654115,"threshold_uncertainty_score":0.40086573},"labels":[],"label_agreement":null},{"id":"W1988946936","doi":"10.1074/jbc.m804490200","title":"YidC Is Involved in the Biogenesis of Anaerobic Respiratory Complexes in the Inner Membrane of Escherichia coli","year":2008,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Universiteit Utrecht; University of Alberta; Centre National de la Recherche Scientifique; Dartmouth College","keywords":"Escherichia coli; Biogenesis; Anaerobic exercise; Inner membrane; Chemistry; Membrane; Respiratory system; Microbiology; Biology; Biochemistry; Physiology; Anatomy; Gene","score_opus":0.03504968258813782,"score_gpt":0.24841840542598004,"score_spread":0.21336872283784222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988946936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99760556,0.0017119786,0.00000589922,0.00045679556,0.000032688877,0.000083374995,0.000021202934,0.000001234611,0.00008127473],"genre_scores_gemma":[0.99780285,0.001230305,0.00026006714,0.0005767955,0.00010644676,0.0000035591997,0.0000083119885,0.000005424678,0.0000062224535],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872833,0.00015590692,0.00063272426,0.0001600633,0.00014722059,0.00017576783],"domain_scores_gemma":[0.999095,0.00005281202,0.00042209792,0.00029243925,0.00010966052,0.000027978602],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006236706,0.00014111657,0.00033179158,0.00003945896,0.000029099676,0.0000047062085,0.0006839017,0.0004199067,0.000025268539],"category_scores_gemma":[0.00014835417,0.000073970055,0.0001563072,0.00028176227,0.00047755626,0.0000024002316,0.00008878602,0.00025273208,2.94229e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017830101,0.00021109355,0.01634763,0.000023222226,0.000023030945,0.000015259233,0.00006457305,0.000005108677,0.98277235,0.000008058154,0.0002531606,0.00009818828],"study_design_scores_gemma":[0.0005294083,0.0004770468,0.03879852,0.0000183671,0.000009613405,0.00003609267,0.00028576786,0.0000016077174,0.9554844,0.00003736899,0.0042327438,0.000089081856],"about_ca_topic_score_codex":0.000024416733,"about_ca_topic_score_gemma":0.000013506396,"teacher_disagreement_score":0.02728799,"about_ca_system_score_codex":0.000008948698,"about_ca_system_score_gemma":0.00008228976,"threshold_uncertainty_score":0.32387048},"labels":[],"label_agreement":null},{"id":"W1989026749","doi":"10.1038/nsmb.2935","title":"A coiled-coil domain acts as a molecular ruler to regulate O-antigen chain length in lipopolysaccharide","year":2014,"lang":"en","type":"article","venue":"Nature Structural & Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Wellcome Trust","keywords":"Coiled coil; Biophysics; Polymerase; Chemistry; Biochemistry; Biology; Crystallography; DNA","score_opus":0.0020861520810200066,"score_gpt":0.257192799530803,"score_spread":0.25510664744978295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989026749","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99177843,0.0012071973,0.0013054434,0.0035123862,0.00076895196,0.0006021916,0.00005323779,0.000057619145,0.0007145202],"genre_scores_gemma":[0.9885961,0.00008148806,0.0049304613,0.005504377,0.00032635292,0.000051439034,0.0003307262,0.000082918166,0.000096164506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965014,0.00037609116,0.0005479904,0.0013356075,0.00021301236,0.0010259037],"domain_scores_gemma":[0.99828273,0.000016003156,0.00019588054,0.001074345,0.00015283903,0.00027818466],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00039315954,0.0006129334,0.00061570795,0.0003175796,0.00010418791,0.000052645424,0.0009010095,0.0022721658,0.00005084987],"category_scores_gemma":[0.0004206539,0.0005506919,0.00024352667,0.0003673096,0.00024845396,0.0000062000368,0.00061126874,0.0008401159,0.000039200204],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002630069,0.000021311009,0.00034331824,0.000011790072,0.00009739659,0.00004843537,0.000036782505,0.000052343556,0.9666113,0.026683621,0.00009705436,0.0057336134],"study_design_scores_gemma":[0.0011679938,0.00093771965,0.0027116851,0.000025042182,0.000022196347,0.00015000238,0.000023883975,0.000049108407,0.9336975,0.013327442,0.047149234,0.0007381448],"about_ca_topic_score_codex":0.00010129223,"about_ca_topic_score_gemma":0.00018205364,"teacher_disagreement_score":0.04705218,"about_ca_system_score_codex":0.000048536524,"about_ca_system_score_gemma":0.00011351636,"threshold_uncertainty_score":0.99969447},"labels":[],"label_agreement":null},{"id":"W1989065363","doi":"10.1039/c1mb05122a","title":"Small delay, big waves: a minimal delayed negative feedback model captures <i>Escherichia coli</i> single cell SOS kinetics","year":2011,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; Christie (Canada)","funders":"","keywords":"SOS response; Escherichia coli; Biological system; Kinetics; Ordinary differential equation; Negative feedback; Noise (video); Biophysics; Positive feedback; Dynamics (music); Biology; Gene; Differential equation; Physics; Genetics; Computer science; Classical mechanics","score_opus":0.02280044562887158,"score_gpt":0.19917521494695994,"score_spread":0.17637476931808838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989065363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821094,0.0012479029,0.010850883,0.00008543422,0.0005091129,0.0006787423,0.0001730533,0.000071236456,0.004274236],"genre_scores_gemma":[0.9848511,0.00009687022,0.013303671,0.0006510264,0.00024300277,0.00006270859,0.00015333349,0.00012089419,0.0005173492],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973576,0.00015381131,0.0006092799,0.0009138911,0.00022126302,0.00074417586],"domain_scores_gemma":[0.99829924,0.000008440279,0.00030564374,0.00090149307,0.00024072311,0.00024448484],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015718368,0.0005661523,0.00045263924,0.00011324817,0.000104127466,0.00007272578,0.00066424644,0.0009702682,0.0000146790435],"category_scores_gemma":[0.000042647942,0.0005439821,0.00026888683,0.00025133046,0.00024634995,0.000003797901,0.00037179975,0.0002467795,0.00003132637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002748629,0.00037994713,0.000028856644,0.000058214828,0.00015308813,0.000048703452,0.00022515775,0.000114709284,0.9977953,0.00007504302,0.00051441515,0.00033169537],"study_design_scores_gemma":[0.0010687119,0.0017023805,0.000038726244,0.000028404178,0.00010331607,0.00004437141,0.00017341031,0.0011696994,0.9896538,0.00012421227,0.005193292,0.0006996248],"about_ca_topic_score_codex":0.00022428708,"about_ca_topic_score_gemma":0.00027986313,"teacher_disagreement_score":0.008141455,"about_ca_system_score_codex":0.000039105285,"about_ca_system_score_gemma":0.00013752088,"threshold_uncertainty_score":0.99970114},"labels":[],"label_agreement":null},{"id":"W1989304001","doi":"10.1016/j.resmic.2013.02.003","title":"Separate mechanisms are involved in rifampicin upmodulated and downmodulated gene expression in Salmonella Typhimurium","year":2013,"lang":"en","type":"article","venue":"Research in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; McMaster University","funders":"","keywords":"Biology; Transcription (linguistics); RNA polymerase; Promoter; Gene; RNA polymerase II; Gene expression; Rifampicin; Molecular biology; Polymerase; RNA; Genetics; Antibiotics","score_opus":0.024706519244135302,"score_gpt":0.29016049168577,"score_spread":0.2654539724416347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989304001","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997488,0.0010224766,0.00002812723,0.00062301866,0.00010336067,0.0006610751,0.000020489744,0.000010680986,0.000042778676],"genre_scores_gemma":[0.99731,0.0011161788,0.0010316459,0.00009366957,0.000042968673,0.0000819648,0.00020117324,0.000025704332,0.000096686425],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974058,0.00057241984,0.0004166918,0.0007451649,0.00006233274,0.0007975817],"domain_scores_gemma":[0.9992815,0.00003243304,0.00007301545,0.00041321426,0.00011505763,0.000084772124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007995994,0.00021498592,0.0003354821,0.0005351043,0.000044313227,0.00002861729,0.00032053163,0.00097187515,0.00004132083],"category_scores_gemma":[0.00008064135,0.00019542285,0.000030207042,0.0004931979,0.0002673379,0.0000062176123,0.0005291604,0.0005433164,0.000038689654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014930958,0.000112216934,0.009594582,0.000019201056,0.000008116657,0.000027538788,0.000032224725,0.00005027908,0.98933315,0.000018703844,0.00023594154,0.00041871506],"study_design_scores_gemma":[0.0014695318,0.00033132127,0.03398116,0.00006534041,0.0000010627739,0.000024095943,0.00010021891,0.00021409147,0.9610072,0.0015812656,0.0009903082,0.00023441795],"about_ca_topic_score_codex":0.000525578,"about_ca_topic_score_gemma":0.0013627266,"teacher_disagreement_score":0.028325986,"about_ca_system_score_codex":0.000055435572,"about_ca_system_score_gemma":0.0000671353,"threshold_uncertainty_score":0.79691124},"labels":[],"label_agreement":null},{"id":"W1989446693","doi":"10.1128/jb.185.16.4973-4982.2003","title":"Genomic Profiling of Iron-Responsive Genes in <i>Salmonella enterica</i> Serovar Typhimurium by High-Throughput Screening of a Random Promoter Library","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":178,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"","keywords":"Biology; Salmonella enterica; Gene; Regulon; Promoter; Genetics; Salmonella; Gene expression profiling; Ferritin; Gene expression; Computational biology; Bacteria; Biochemistry; Escherichia coli","score_opus":0.006802504390411782,"score_gpt":0.2127975875425082,"score_spread":0.20599508315209641,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989446693","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962415,0.0022449072,0.0007117251,0.00019982245,0.0003121692,0.00019468946,0.000050450126,0.0000033494152,0.000041380827],"genre_scores_gemma":[0.9836134,0.0015161266,0.014524529,0.00009808466,0.00012576516,0.00000416066,0.00004027929,0.000031395284,0.000046309422],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981145,0.0003271101,0.00094079337,0.0002578829,0.00008107123,0.0002786409],"domain_scores_gemma":[0.99867123,0.00003775746,0.00085310213,0.00026139856,0.00011469228,0.00006181273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035841926,0.0002062857,0.0006407555,0.00016339595,0.000020271807,0.000008799755,0.00030952206,0.00042084898,0.00003624712],"category_scores_gemma":[0.00009116665,0.0001762171,0.00016309379,0.00012798222,0.000216512,0.000012007338,0.00014687961,0.000208474,8.5995794e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018767917,0.00012575352,0.012517024,0.000043387223,0.000102413534,0.000013841678,0.00002900925,0.000044790446,0.98415035,0.000028146409,0.00011569735,0.0009528246],"study_design_scores_gemma":[0.0026014398,0.0016541899,0.0057453723,0.000043352593,0.000032646712,0.00020506447,0.00005546264,0.0000070806395,0.9828743,0.00007822501,0.0065395604,0.00016335232],"about_ca_topic_score_codex":0.000009175596,"about_ca_topic_score_gemma":0.0000020244545,"teacher_disagreement_score":0.013812804,"about_ca_system_score_codex":0.000009988277,"about_ca_system_score_gemma":0.00015504923,"threshold_uncertainty_score":0.7185925},"labels":[],"label_agreement":null},{"id":"W1989709109","doi":"10.1128/jb.00949-08","title":"Differential Interactions between Tat-Specific Redox Enzyme Peptides and Their Chaperones","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Biochemistry; Enzyme; Translocase; Sequence motif; Redox; Peptide sequence; Cofactor; Escherichia coli; Chemistry; Gene","score_opus":0.012518782524182162,"score_gpt":0.2386088994568024,"score_spread":0.2260901169326202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989709109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99626946,0.0007368475,0.00094190135,0.0014001199,0.00050283805,0.000057501842,0.000017752556,0.000006089058,0.0000674985],"genre_scores_gemma":[0.9964063,0.0014953251,0.0005826658,0.00013083043,0.0012765165,9.813728e-7,0.00002857568,0.000010943949,0.00006781652],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990603,0.00007973925,0.00040716084,0.00019893899,0.000041541643,0.00021237547],"domain_scores_gemma":[0.99932456,0.000020563357,0.00028633093,0.00018107762,0.000099295146,0.00008815571],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010416889,0.00017061188,0.00033284607,0.000109576235,0.000066414264,0.000030438128,0.00020320342,0.00025595355,0.00004631011],"category_scores_gemma":[0.000029276476,0.00012552463,0.00011313954,0.000045932844,0.00015300607,0.0000074439045,0.000081198836,0.00022533095,0.000002559776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001407207,0.000040469276,0.00079129974,0.000002292788,0.00006319634,0.0000035458147,0.000042083644,5.91856e-7,0.9720481,0.00007401539,0.00040716576,0.026386537],"study_design_scores_gemma":[0.0008757238,0.003462732,0.15285406,0.000026472528,0.00003434949,0.0007944944,0.000114042086,0.000004219207,0.6456102,0.0006956774,0.19526172,0.0002662873],"about_ca_topic_score_codex":0.000001458121,"about_ca_topic_score_gemma":0.0000039795564,"teacher_disagreement_score":0.32643786,"about_ca_system_score_codex":0.000010087499,"about_ca_system_score_gemma":0.000028519404,"threshold_uncertainty_score":0.5118746},"labels":[],"label_agreement":null},{"id":"W1990045685","doi":"10.1021/bi048561g","title":"Overexpression, Purification, and Characterization of ProQ, a Posttranslational Regulator for Osmoregulatory Transporter ProP of <i>Escherichia coli</i>","year":2004,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Circular dichroism; Escherichia coli; Histidine; Biochemistry; Chemistry; Biology; Biophysics; Amino acid; Gene","score_opus":0.0062555604880020115,"score_gpt":0.20799695158681136,"score_spread":0.20174139109880934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990045685","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99761117,0.0001611127,0.0012911205,0.00024071925,0.00003065933,0.00035060372,0.00028637834,0.000008111844,0.000020110434],"genre_scores_gemma":[0.9957339,0.000043670494,0.0032072612,0.000040001694,0.00009653393,0.00004149662,0.00074495474,0.000017346405,0.000074796706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99920577,0.000006809754,0.00030467377,0.0002772254,0.000087191096,0.00011836165],"domain_scores_gemma":[0.99933726,0.0000025621966,0.00019575405,0.00024701245,0.00017351015,0.000043933163],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007003861,0.00012584822,0.00015181517,0.000021997495,0.000031597145,0.0000050164676,0.00011070052,0.00031275224,0.0000049644927],"category_scores_gemma":[0.000014324983,0.00012165205,0.000061045874,0.00006217296,0.00018174943,0.0000037197017,0.00001892989,0.00003725538,1.0049684e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002099824,0.00009789394,0.0004880416,0.00022171927,0.000029525412,7.08708e-8,0.000027369428,0.000002245215,0.99839735,0.00017225968,0.00002072824,0.00033283912],"study_design_scores_gemma":[0.00083407015,0.0001520166,0.0153771015,0.00006532349,0.000019301222,0.0000034903874,0.000008920852,0.000006044099,0.981976,0.0001619807,0.0012650358,0.00013073145],"about_ca_topic_score_codex":0.0000020943191,"about_ca_topic_score_gemma":4.957699e-7,"teacher_disagreement_score":0.016421342,"about_ca_system_score_codex":0.000006140143,"about_ca_system_score_gemma":0.00014599164,"threshold_uncertainty_score":0.49608266},"labels":[],"label_agreement":null},{"id":"W1990103780","doi":"10.1139/w05-138","title":"Transcriptional analysis of the<i>Pseudomonas aeruginosa toxA</i>regulatory gene<i>ptxR</i>","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; National Institute of Allergy and Infectious Diseases; Japan Science and Technology Agency; National Institutes of Health","keywords":"Biology; Promoter; RNA polymerase; Transcription (linguistics); Gene expression; Gene; Sigma factor; Genetics; Molecular biology; Regulatory sequence; Regulation of gene expression; RNA","score_opus":0.003969772385356151,"score_gpt":0.17093893069296096,"score_spread":0.1669691583076048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990103780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954551,0.0027808156,0.00015211456,0.0005160808,0.0005807093,0.0000651249,0.0003149083,0.0000014989138,0.00013366583],"genre_scores_gemma":[0.9987088,0.000053237152,0.00037619963,0.0003169531,0.0002503721,9.772859e-7,0.000113083224,0.000011395334,0.00016902613],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988945,0.000092704366,0.00048450986,0.00018605482,0.000046315912,0.0002959239],"domain_scores_gemma":[0.9990438,0.000008019755,0.0003153096,0.00030610507,0.00021219105,0.000114563154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019855032,0.00014732372,0.00032716256,0.0002926491,0.00007882088,0.000010010938,0.00047124995,0.00036458197,0.000069157984],"category_scores_gemma":[0.000019765524,0.000115621435,0.0004260386,0.00032722254,0.00045720328,0.0000024447368,0.000028288017,0.00015099731,0.0000015016835],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022768802,0.000022543853,0.011078758,0.0000030888748,0.0004051493,0.000006166992,0.00001095523,0.00026295372,0.98573214,0.000258623,0.00199308,0.0002037499],"study_design_scores_gemma":[0.00044664618,0.00016045677,0.05759832,0.000006300717,0.00036832524,0.00028901934,0.000014542548,0.0000024770723,0.7748029,0.00009169499,0.16607268,0.00014663798],"about_ca_topic_score_codex":0.0008708574,"about_ca_topic_score_gemma":0.028567562,"teacher_disagreement_score":0.21092926,"about_ca_system_score_codex":0.00003451433,"about_ca_system_score_gemma":0.00071152777,"threshold_uncertainty_score":0.9891586},"labels":[],"label_agreement":null},{"id":"W1990311621","doi":"10.1371/journal.pone.0056858","title":"Antibiotic Inducibility of the mexXY Multidrug Efflux Operon of Pseudomonas aeruginosa: Involvement of the MexZ Anti-Repressor ArmZ","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Cystic Fibrosis Canada","keywords":"Operon; Repressor; Efflux; Pseudomonas aeruginosa; Biology; Aminoglycoside; Mutant; Microbiology; TetR; Spectinomycin; Multiple drug resistance; trp operon; Gene; Genetics; Gene expression; Antibiotic resistance; Drug resistance; Antibiotics; Bacteria","score_opus":0.023795419452180087,"score_gpt":0.2133633105904806,"score_spread":0.18956789113830053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990311621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981899,0.00023281173,0.000004435841,0.0005759234,0.000108216824,0.00073113304,0.000050650964,0.0000048006223,0.0001021302],"genre_scores_gemma":[0.9989914,0.00016880613,0.000594851,0.000063427746,0.00004661306,0.000010077785,0.000010818821,0.0000141543305,0.000099855184],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986903,0.000115120536,0.00043317387,0.00033681074,0.00023066413,0.0001939453],"domain_scores_gemma":[0.9981434,0.000015437237,0.0003292367,0.0012555084,0.00022399367,0.000032438144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002153268,0.00015320019,0.00032666308,0.000024938388,0.000043428954,0.000005984574,0.0006460615,0.00025951708,0.000030074993],"category_scores_gemma":[0.00017831544,0.00009170294,0.00013972829,0.0001380507,0.00045615228,0.0000032147614,0.00065426045,0.00013186941,0.0000023048656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016154749,0.0009839352,0.048972327,0.00014501408,0.00019211872,3.876462e-8,0.000049006438,0.000008064029,0.94931847,0.000029655283,0.000055334385,0.0002299014],"study_design_scores_gemma":[0.0003893152,0.00017085829,0.13767174,0.000091900154,0.00007775845,4.4924724e-7,0.000039457846,0.00003624254,0.8613484,0.000047109505,0.000039914652,0.00008683697],"about_ca_topic_score_codex":0.00034192752,"about_ca_topic_score_gemma":0.000053016072,"teacher_disagreement_score":0.088699415,"about_ca_system_score_codex":0.00000925751,"about_ca_system_score_gemma":0.00006301137,"threshold_uncertainty_score":0.37395376},"labels":[],"label_agreement":null},{"id":"W1990448131","doi":"10.1186/1471-2180-14-71","title":"Identification of a predicted partner-switching system that affects production of the gene transfer agent RcGTA and stationary phase viability in Rhodobacter capsulatus","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rhodobacter; Biology; Gene; Mutant; Regulator; Genetics; Regulation of gene expression; Regulator gene; Transcription factor; Gene expression; Cell biology","score_opus":0.009712202902920034,"score_gpt":0.22807259258791276,"score_spread":0.21836038968499272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990448131","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99644864,0.00014666654,0.0023980795,0.000074102754,0.0003652049,0.00047826045,0.000077700846,0.0000073102033,0.000004063415],"genre_scores_gemma":[0.9995173,0.00003766616,0.00019115306,0.000012102012,0.000050237635,0.000020279911,0.00014424279,0.000009120259,0.000017881905],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887353,0.00031470586,0.00029795803,0.00033803424,0.000032240794,0.00014355753],"domain_scores_gemma":[0.99940044,0.000016854532,0.00014314344,0.00036510517,0.000055384917,0.000019054598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042148313,0.00011357289,0.00019416171,0.000049574133,0.000032519656,0.000004093418,0.00013159914,0.00025605646,0.0000016953472],"category_scores_gemma":[0.00007179493,0.00008620843,0.000051385134,0.0000840275,0.00016104014,0.000003121742,0.00007193326,0.00007074871,2.2861326e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001418006,0.0000929997,0.009943244,0.00015691499,0.000020074674,7.883952e-8,0.00006265046,0.00003068632,0.98872423,0.000068324545,0.000014372141,0.0007446042],"study_design_scores_gemma":[0.0007261219,0.00020526034,0.042941887,0.000022536582,0.000023009075,0.000028007262,0.000035482117,0.00012906049,0.9553812,0.000016691096,0.0004109462,0.00007977893],"about_ca_topic_score_codex":0.000017078712,"about_ca_topic_score_gemma":0.00012232261,"teacher_disagreement_score":0.033343032,"about_ca_system_score_codex":0.000015024042,"about_ca_system_score_gemma":0.00004168348,"threshold_uncertainty_score":0.35154775},"labels":[],"label_agreement":null},{"id":"W1990595232","doi":"10.1016/j.abb.2003.08.008","title":"The Escherichia coli ynfEFGHI operon encodes polypeptides which are paralogues of dimethyl sulfoxide reductase (DmsABC)","year":2003,"lang":"en","type":"article","venue":"Archives of Biochemistry and Biophysics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Operon; Escherichia coli; Dimethyl sulfoxide; Plasmid; Molecular biology; Biology; Chemistry; Protein subunit; Biochemistry; Gene; Enzyme","score_opus":0.006385361590282706,"score_gpt":0.21305274269524077,"score_spread":0.20666738110495805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990595232","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99630034,0.0025067744,0.00006251133,0.00017302042,0.00007977087,0.000112392554,0.000108225424,0.000007695255,0.00064926146],"genre_scores_gemma":[0.9938942,0.0033796243,0.0022816327,0.000027339409,0.00009979948,0.0000089771565,0.00007762262,0.000016247743,0.00021453395],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989069,0.00006916334,0.00031193887,0.0003566086,0.00009233921,0.00026302793],"domain_scores_gemma":[0.9990496,0.000054416385,0.0002575255,0.00049440784,0.0000702086,0.00007385806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011565318,0.00021757127,0.00024995417,0.000018510065,0.00012687109,0.0000198354,0.00029486787,0.00019482175,0.0000018575853],"category_scores_gemma":[0.00016146842,0.00016334133,0.00010209099,0.00013231364,0.0008657895,0.0000035652686,0.00016533387,0.00012433824,5.052513e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013926282,0.00010275129,0.00072287634,0.00007641007,0.00008505579,5.1086164e-7,0.000032516386,0.000003200325,0.996282,0.0005837264,0.000060773735,0.001910936],"study_design_scores_gemma":[0.0002923418,0.00026649467,0.0012245051,0.000039992778,0.00003152044,0.000006033117,0.00030861047,0.00000782455,0.99362266,0.0011629233,0.0028408873,0.00019622117],"about_ca_topic_score_codex":0.000022134605,"about_ca_topic_score_gemma":0.000011867107,"teacher_disagreement_score":0.0027801136,"about_ca_system_score_codex":0.000002560583,"about_ca_system_score_gemma":0.00008668843,"threshold_uncertainty_score":0.6660866},"labels":[],"label_agreement":null},{"id":"W1990633741","doi":"10.1016/j.jsb.2012.05.003","title":"ClpP: A structurally dynamic protease regulated by AAA+ proteins","year":2012,"lang":"en","type":"review","venue":"Journal of Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; U.S. Public Health Service","keywords":"AAA proteins; Protease; Proteolysis; Proteases; Biophysics; ATPase; Protein degradation; Biology; Chemistry; Biochemistry; Enzyme; Cell biology","score_opus":0.012580960019165621,"score_gpt":0.28811316168330814,"score_spread":0.2755322016641425,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990633741","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.022203255,0.9748271,0.00003285245,0.00009012546,0.0015719351,0.0008710844,0.0003775389,0.000014192216,0.000011902753],"genre_scores_gemma":[0.013454643,0.9821318,0.0015861609,0.00005016732,0.00129076,0.0000239602,0.0011901603,0.000084495376,0.00018787719],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968982,0.0003609859,0.0014001962,0.0005067469,0.0001561249,0.0006777484],"domain_scores_gemma":[0.9968249,0.000017748767,0.002079054,0.0005618898,0.00026917152,0.00024721617],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00029860283,0.0007226466,0.0017729142,0.00022982377,0.00009746349,0.000041608728,0.0009879298,0.0021835924,0.00010019946],"category_scores_gemma":[0.000107315245,0.0004725993,0.0007395757,0.00021223981,0.00036307005,0.0000084007725,0.00033969092,0.0008861272,0.000013605578],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011663456,0.000022195614,0.00001268206,0.001004416,0.00072865566,0.000010478011,0.00000662853,2.3207265e-7,0.22441438,0.000039380797,0.0005166703,0.7731276],"study_design_scores_gemma":[0.00048063605,0.0012925131,0.000026176867,0.0004478048,0.0006674016,0.0015653083,0.000004331749,0.0000010669219,0.0037049323,0.00022721362,0.9909973,0.0005852802],"about_ca_topic_score_codex":0.00000786245,"about_ca_topic_score_gemma":0.0000054001666,"teacher_disagreement_score":0.99048066,"about_ca_system_score_codex":0.00008606852,"about_ca_system_score_gemma":0.0003843825,"threshold_uncertainty_score":0.99977255},"labels":[],"label_agreement":null},{"id":"W1990840993","doi":"10.1093/nar/gkt918","title":"High-copy bacterial plasmids diffuse in the nucleoid-free space, replicate stochastically and are randomly partitioned at cell division","year":2013,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute on Minority Health and Health Disparities; National Institute of Allergy and Infectious Diseases; Wellcome Trust","keywords":"Plasmid; Biology; Cell division; Nucleoid; T-DNA Binary system; Genetics; Caulobacter crescentus; Origin of replication; Cell biology; Gene; Escherichia coli; Cell; Cell cycle; Vector (molecular biology)","score_opus":0.016280342141670234,"score_gpt":0.2647283452051548,"score_spread":0.24844800306348458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990840993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99247056,0.000109809705,0.00008469744,0.0060720765,0.00011649645,0.0007609611,0.00004896323,0.000018607963,0.00031780248],"genre_scores_gemma":[0.9979857,0.00042154043,0.000488773,0.00016049782,0.00023758304,0.00015634435,0.00006526622,0.000035386773,0.00044885822],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99775475,0.00032241913,0.0002973073,0.0006312914,0.00037643043,0.000617828],"domain_scores_gemma":[0.9984895,0.000095546275,0.00007385514,0.0010432152,0.00016324202,0.00013461782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076202507,0.00020543768,0.00024264544,0.00011537023,0.00039467638,0.00014119546,0.00071591977,0.0004619387,0.00021775618],"category_scores_gemma":[0.00037700028,0.00014673456,0.00005510907,0.00022145583,0.000552158,0.000009238019,0.0014901432,0.00038955122,0.00010858513],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005752068,0.00018203082,0.0013021835,0.000019731027,0.000012367661,0.0000063996113,0.000070804075,0.0000024036542,0.98891836,0.00022071284,0.007998994,0.00069077994],"study_design_scores_gemma":[0.014086663,0.002600244,0.15510215,0.000060264098,0.000022054133,0.000033955395,0.00035364612,0.00028967168,0.7713877,0.0036249084,0.05176962,0.00066913717],"about_ca_topic_score_codex":0.000113602124,"about_ca_topic_score_gemma":0.00010513425,"teacher_disagreement_score":0.2175307,"about_ca_system_score_codex":0.000030779713,"about_ca_system_score_gemma":0.000038117596,"threshold_uncertainty_score":0.5983662},"labels":[],"label_agreement":null},{"id":"W1991286237","doi":"10.1074/jbc.m110.144709","title":"Structure and Functional Analysis of LptC, a Conserved Membrane Protein Involved in the Lipopolysaccharide Export Pathway in Escherichia coli*","year":2010,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Periplasmic space; Bacterial outer membrane; Inner membrane; Biochemistry; Cell biology; Biology; Transport protein; Chaperone (clinical); Chemistry; Biophysics; Escherichia coli; Membrane","score_opus":0.01335513730464976,"score_gpt":0.21798680136006823,"score_spread":0.20463166405541847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991286237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993173,0.00020365592,0.000010599314,0.00027348305,0.000050028702,0.00009393491,0.000029170948,0.0000017081755,0.000020109503],"genre_scores_gemma":[0.9991924,0.000074484946,0.00045818492,0.000101290105,0.000113652655,0.000005159295,0.000037771068,0.000004432034,0.0000126148525],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989815,0.000057878202,0.0004929587,0.00019830102,0.00011286341,0.00015652167],"domain_scores_gemma":[0.99930334,0.000027393537,0.00033146827,0.00019557838,0.00009234585,0.000049860857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044064943,0.00013707213,0.0003430769,0.00006648197,0.000019721663,0.0000134598895,0.0002426314,0.00055117626,0.00007877083],"category_scores_gemma":[0.00025058657,0.00008372962,0.00012503235,0.00024776623,0.00023155159,0.000002971768,0.00008086964,0.0004770651,6.758387e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024872407,0.000094993375,0.026830042,0.000014351808,0.000106556065,0.000011944628,0.000013087311,0.000006388954,0.97251445,0.0000178867,0.0000071361756,0.000134443],"study_design_scores_gemma":[0.0005134268,0.00017304065,0.051933605,0.000008628753,0.000032769094,0.000027378863,0.000093194685,0.000014723503,0.946662,0.000104990104,0.00033975867,0.00009646626],"about_ca_topic_score_codex":0.000014091615,"about_ca_topic_score_gemma":0.00011700758,"teacher_disagreement_score":0.025852427,"about_ca_system_score_codex":0.000006299457,"about_ca_system_score_gemma":0.00009006349,"threshold_uncertainty_score":0.42511758},"labels":[],"label_agreement":null},{"id":"W1991586725","doi":"10.1021/bi060278p","title":"Synthesis of HPr(Ser-P)(His∼P) by Enzyme I of the Phosphoenolpyruvate:Sugar Phosphotransferase System of <i>Streptococcus</i> <i>salivarius</i>","year":2006,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"PEP group translocation; Phosphorylation; Phosphoenolpyruvate carboxykinase; Bacillus subtilis; Streptococcus salivarius; Enzyme; Chemistry; Kinase; Biochemistry; Phosphotransferase; Streptococcus; Stereochemistry; Biology; Bacteria","score_opus":0.00249610379505398,"score_gpt":0.1736508429648255,"score_spread":0.17115473916977153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991586725","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946905,0.0020722754,0.00007123371,0.000080298756,0.00016102169,0.00025192447,0.0011366132,0.00001874746,0.0015174317],"genre_scores_gemma":[0.9990425,0.00013989622,0.00019161432,0.0000277204,0.00009290619,0.000032852036,0.00014535226,0.000036441605,0.00029067995],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99823725,0.000041362986,0.0007278431,0.00045021644,0.00023508706,0.00030826675],"domain_scores_gemma":[0.9983147,0.000023313984,0.0004444702,0.0009921058,0.00016985477,0.000055559125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015917921,0.000296152,0.00044528008,0.00002445875,0.000048969407,0.0000076241095,0.0006982032,0.00061861024,0.000027868839],"category_scores_gemma":[0.000047522484,0.00024111675,0.0002723002,0.00021315235,0.00047261015,0.0000023552943,0.00019367652,0.00012286322,0.0000012642909],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000114846276,0.00021743309,0.0015172897,0.00042204917,0.00008316776,8.199141e-7,0.0000056520453,0.000011176131,0.99265265,0.00007963998,0.004641205,0.00025404315],"study_design_scores_gemma":[0.000455967,0.00010340517,0.00030797478,0.00011801449,0.000079672885,0.000009042074,0.000060083534,0.000007496236,0.9934525,0.000010831975,0.0051617157,0.00023331934],"about_ca_topic_score_codex":0.0003499062,"about_ca_topic_score_gemma":0.000010049291,"teacher_disagreement_score":0.0043520834,"about_ca_system_score_codex":0.000022185088,"about_ca_system_score_gemma":0.00013882178,"threshold_uncertainty_score":0.98324555},"labels":[],"label_agreement":null},{"id":"W1991863703","doi":"10.1128/jb.00599-08","title":"Genome-Wide Identification of H-NS-Controlled, Temperature-Regulated Genes in <i>Escherichia</i> <i>coli</i> K-12","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Alberta","keywords":"Biology; Escherichia coli; Gene; Genome; DNA microarray; Genetics; Heat shock; DNA; Molecular biology; Heat shock protein; Gene expression","score_opus":0.0066553414943907275,"score_gpt":0.20887036209625165,"score_spread":0.20221502060186092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991863703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968135,0.0019086362,0.000077596866,0.00034593052,0.0005837793,0.00019856803,0.00001352631,0.000004569,0.000053913693],"genre_scores_gemma":[0.9956318,0.0031656963,0.0004794575,0.00020876534,0.0003061093,0.0000072674807,0.000036271846,0.000021604623,0.00014302845],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980257,0.0001797363,0.0011787211,0.00024435908,0.00010623581,0.00026520703],"domain_scores_gemma":[0.9984414,0.000025675934,0.00088786054,0.00031506584,0.0002609035,0.00006906705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043744044,0.000200353,0.0006556835,0.00019907882,0.000045861252,0.000010087881,0.0003685074,0.0005535276,0.000016272896],"category_scores_gemma":[0.00014637176,0.00016742191,0.00021917971,0.00016121268,0.00024169254,0.000008832806,0.00008747152,0.00023783825,0.0000027618864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011864416,0.00013479085,0.0091530215,0.00001248216,0.00011529226,0.000022080189,0.00003432048,0.0000968385,0.98893744,0.000009154765,0.00008727892,0.00021089127],"study_design_scores_gemma":[0.0030886445,0.00079679413,0.20251825,0.000011646395,0.000031131603,0.0002809336,0.00002147165,0.0000071021796,0.7849043,0.000041916035,0.008133538,0.00016428124],"about_ca_topic_score_codex":0.000008668485,"about_ca_topic_score_gemma":0.00002182518,"teacher_disagreement_score":0.20403312,"about_ca_system_score_codex":0.000021631155,"about_ca_system_score_gemma":0.00018771234,"threshold_uncertainty_score":0.68272674},"labels":[],"label_agreement":null},{"id":"W1991892385","doi":"10.1038/nsmb.1374","title":"Bacterial polysaccharide co-polymerases share a common framework for control of polymer length","year":2008,"lang":"en","type":"article","venue":"Nature Structural & Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Biotechnology Research Institute; Institute for Research in Immunology and Cancer; McGill University","funders":"","keywords":"Periplasmic space; Polysaccharide; Chemistry; Cryo-electron microscopy; Helix (gastropod); Polymer; Crystallography; Sinorhizobium meliloti; Polymerase; Peptidoglycan; Biophysics; Biochemistry; Biology; DNA; Cell wall; Gene; Escherichia coli","score_opus":0.006386226476173757,"score_gpt":0.2871153536731513,"score_spread":0.2807291271969775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991892385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98570085,0.005553274,0.005201585,0.00063183624,0.0008897706,0.0005211044,0.0014362591,0.00003242528,0.000032894353],"genre_scores_gemma":[0.9943844,0.00013374184,0.0024013142,0.0012127762,0.00062962784,0.000042550782,0.0011125534,0.0000508355,0.000032202217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981019,0.000121775265,0.00045819016,0.0006591778,0.00011361577,0.00054536154],"domain_scores_gemma":[0.9988007,0.0000433788,0.00029086316,0.0005977297,0.00015552761,0.00011178425],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00007697052,0.00039566224,0.0005737177,0.00011068032,0.0001510078,0.000012534974,0.00054272293,0.002052555,0.00009004776],"category_scores_gemma":[0.00020682681,0.00033799352,0.00032403678,0.00012957893,0.00046795767,0.0000041591215,0.0001285057,0.00045706294,0.0000019242502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008105364,0.000023800816,0.0012745126,0.000018250348,0.00022000386,0.000008079376,0.000014131343,0.0000018480857,0.98745286,0.008149178,0.00020062047,0.0018261926],"study_design_scores_gemma":[0.0014667212,0.0010983325,0.0014151253,0.000012999763,0.000056307665,0.00014184098,0.000010465686,0.0000146633,0.9889574,0.0018087078,0.0046336213,0.00038383075],"about_ca_topic_score_codex":0.00003458905,"about_ca_topic_score_gemma":0.000011349022,"teacher_disagreement_score":0.008683547,"about_ca_system_score_codex":0.000013293278,"about_ca_system_score_gemma":0.000115862145,"threshold_uncertainty_score":0.9999072},"labels":[],"label_agreement":null},{"id":"W1992676329","doi":"10.1371/journal.pone.0084382","title":"Transmission of an Oxygen Availability Signal at the Salmonella enterica Serovar Typhimurium fis Promoter","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Science Foundation Ireland; Society for General Microbiology; University of Regina","keywords":"Salmonella enterica; rpoS; Biology; Repressor; Promoter; Transcription (linguistics); DNA supercoil; Nucleoid; Gene expression; Molecular biology; Gene; Escherichia coli; Genetics","score_opus":0.015538553225231467,"score_gpt":0.20126393173928414,"score_spread":0.18572537851405269,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992676329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99802923,0.00019473153,0.000044632903,0.0010596676,0.000022152502,0.00041219383,0.000026666232,0.0000130709195,0.00019766651],"genre_scores_gemma":[0.99657506,0.00013357964,0.0019663747,0.00013941868,0.00010720877,0.000032410913,0.00010115692,0.000018224795,0.0009265888],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990564,0.000077648496,0.00022083317,0.00031363565,0.000129024,0.0002024382],"domain_scores_gemma":[0.999245,0.0000061355963,0.000079764584,0.00049485365,0.000105160165,0.00006911136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000114383336,0.00013269858,0.00016553873,0.00001758448,0.000059900343,0.0000138157975,0.00027089487,0.0002416094,0.0007834339],"category_scores_gemma":[0.000011680968,0.0000905693,0.00006230668,0.00005737877,0.0001589012,0.0000031708253,0.00015006596,0.000085587744,0.00004668046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007867918,0.00060949253,0.00041376185,0.000039525174,0.00007656001,3.445876e-7,0.000032598015,6.976598e-7,0.9947521,0.0000010375554,0.00024461548,0.003750597],"study_design_scores_gemma":[0.00023461206,0.0007986657,0.0052354084,0.000014319469,0.00003692569,0.000002760216,0.0000101916785,0.00013564964,0.9897138,0.00006896903,0.00362938,0.00011935159],"about_ca_topic_score_codex":0.00004190816,"about_ca_topic_score_gemma":0.0000125321885,"teacher_disagreement_score":0.0050383243,"about_ca_system_score_codex":0.000009200745,"about_ca_system_score_gemma":0.000021193671,"threshold_uncertainty_score":0.8578052},"labels":[],"label_agreement":null},{"id":"W1992709794","doi":"10.1002/prot.22272","title":"Trapping open and closed forms of FitE—A group III periplasmic binding protein","year":2008,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"Biological and Environmental Research; Basic Energy Sciences; National Center for Research Resources; Canadian Institutes of Health Research; National Institutes of Health; U.S. Department of Energy","keywords":"Periplasmic space; Chemistry; Crystallography; Stereochemistry; Biochemistry; Escherichia coli","score_opus":0.009809252533767281,"score_gpt":0.20612771044952155,"score_spread":0.19631845791575428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992709794","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99611616,0.0001310842,0.0023316417,0.00008164049,0.00008670943,0.000897815,0.000048904745,0.0000152330285,0.0002908355],"genre_scores_gemma":[0.9884738,0.00020122764,0.010911889,0.00007151282,0.000052657153,0.000024009414,0.00012768102,0.00001243014,0.00012483426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991584,0.000014563601,0.00034093414,0.0001951845,0.00009490636,0.00019602693],"domain_scores_gemma":[0.9994735,0.0000026369166,0.00020592145,0.00020094812,0.00005033299,0.00006666679],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094398674,0.00018211843,0.0002134521,0.000086222346,0.00020454757,0.000047253714,0.00015468945,0.00030927078,0.00001791819],"category_scores_gemma":[0.000022112179,0.00014100336,0.000036038175,0.00011617902,0.00019285013,0.000022504804,0.00026259993,0.00012513631,5.755444e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021104248,0.000016110509,0.00040801405,0.00011703056,0.00004210745,3.9050394e-7,0.00010820007,8.6323445e-7,0.9852124,0.0005139192,0.000042189855,0.013327759],"study_design_scores_gemma":[0.0031509153,0.0023227336,0.0050227814,0.00008228176,0.00003894108,0.0002224396,0.00052219565,0.000581874,0.9741318,0.00076103484,0.012657175,0.0005057987],"about_ca_topic_score_codex":0.000011855016,"about_ca_topic_score_gemma":0.000026396849,"teacher_disagreement_score":0.01282196,"about_ca_system_score_codex":0.0000067613178,"about_ca_system_score_gemma":0.000039043294,"threshold_uncertainty_score":0.574995},"labels":[],"label_agreement":null},{"id":"W1993016819","doi":"10.4161/mge.20498","title":"Diversity of integrating conjugative elements in actinobacteria","year":2012,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Academy of Finland; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Actinobacteria; Plasmid; Biology; Bacterial conjugation; DNA; Bacteria; Streptomyces; Genetics; Horizontal gene transfer; Gene; Secretion; Bacterial genetics; Computational biology; Microbiology; Escherichia coli; Biochemistry; Genome","score_opus":0.010355523278562508,"score_gpt":0.25115703617469404,"score_spread":0.24080151289613153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993016819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985709,0.00030060738,0.00009988794,0.000010037412,0.00029069773,0.0003904644,0.000033885324,0.0000065359923,0.00029696076],"genre_scores_gemma":[0.9959779,0.00018604513,0.003458107,0.000062109175,0.00011148224,0.00004855905,0.00006510386,0.00001498422,0.00007570224],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99869484,0.00007434545,0.00042597263,0.0002589031,0.00013040546,0.00041554103],"domain_scores_gemma":[0.999355,0.0000065150775,0.00021401166,0.00029131086,0.00005959355,0.0000735755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024718704,0.00016970544,0.00019423239,0.00007314204,0.000098252596,0.0000057652223,0.0002653738,0.00017882125,0.000116212184],"category_scores_gemma":[0.000034494435,0.00016698704,0.000056797533,0.0001363526,0.00008393659,0.000004806082,0.001016391,0.00008963236,0.000007218224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035328336,0.00013132782,0.41274545,0.000009681074,0.000034285193,4.1047073e-7,0.00015884548,0.000002104735,0.5795205,0.000009696424,0.000045333254,0.0073070177],"study_design_scores_gemma":[0.00093211635,0.00055974483,0.2446456,0.000019140369,0.000019246425,0.000003155277,0.00035360266,0.00001064968,0.7453108,0.000031605046,0.007905328,0.00020904408],"about_ca_topic_score_codex":0.000059983828,"about_ca_topic_score_gemma":0.000079033314,"teacher_disagreement_score":0.16809985,"about_ca_system_score_codex":0.000026552354,"about_ca_system_score_gemma":0.000026822023,"threshold_uncertainty_score":0.6809534},"labels":[],"label_agreement":null},{"id":"W1993389025","doi":"10.1016/s0923-2508(00)00226-6","title":"Effects of global regulatory proteins and environmental conditionson fimbrial gene expression of F1651 and F1652 producedby causing septicaemia in pigs","year":2000,"lang":"en","type":"article","venue":"Research in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe","funders":"","keywords":"Biology; Fimbria; Gene; Promoter; Catabolite repression; Plasmid; Regulation of gene expression; Regulator gene; Escherichia coli; Reporter gene; Gene expression; Regulatory sequence; lac operon; Genetics; Microbiology; Molecular biology; Mutant","score_opus":0.008033452952858778,"score_gpt":0.265607211725764,"score_spread":0.2575737587729052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993389025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976399,0.0016159063,0.0000035881485,0.00007416664,0.000027136775,0.000518542,0.000097374184,0.000002120656,0.000021285254],"genre_scores_gemma":[0.9983519,0.00089349423,0.00054919114,0.000009288854,0.00004539852,0.000024112687,0.000094941934,0.000008049658,0.000023669269],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987548,0.0002758934,0.00024172086,0.00037980173,0.0000518498,0.00029592967],"domain_scores_gemma":[0.99966717,0.00002694023,0.00004777336,0.0001998591,0.00001758223,0.00004068322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003573167,0.00010617926,0.00020843816,0.00008024877,0.000032249438,0.0000043534124,0.00009357276,0.00038043427,0.000018005194],"category_scores_gemma":[0.00004638573,0.00010095132,0.000020812871,0.00010425721,0.0007442494,0.0000031207685,0.00020273104,0.00015788253,7.683532e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002709024,0.00012286809,0.0071739326,0.00008380672,0.000008442345,0.000008384757,0.000021404709,0.0000028648794,0.9903003,0.000016778136,0.000034976318,0.0019553197],"study_design_scores_gemma":[0.0010044422,0.0005535093,0.039219715,0.00006449222,0.0000030683113,0.00005365985,0.000017799692,0.0000037134803,0.95844215,0.000101136546,0.00044933165,0.00008695747],"about_ca_topic_score_codex":0.000058379173,"about_ca_topic_score_gemma":0.00005045129,"teacher_disagreement_score":0.03204578,"about_ca_system_score_codex":0.00003460246,"about_ca_system_score_gemma":0.000057754703,"threshold_uncertainty_score":0.41166753},"labels":[],"label_agreement":null},{"id":"W1993763802","doi":"10.1111/j.1365-2958.2007.05875.x","title":"WaaL of <i>Pseudomonas aeruginosa</i> utilizes ATP in <i>in vitro</i> ligation of O antigen onto lipid A‐core","year":2007,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canada Research Chairs; Cystic Fibrosis Foundation","keywords":"DNA ligase; Biology; Periplasmic space; Biochemistry; Escherichia coli; Molecular biology; Enzyme; Gene","score_opus":0.006623482281594363,"score_gpt":0.2268408227107473,"score_spread":0.22021734042915292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993763802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971175,0.0013620668,0.0006306563,0.00011647659,0.00019466714,0.00026831086,0.00004398309,0.000007532436,0.00025877895],"genre_scores_gemma":[0.9971055,0.00027268307,0.00205543,0.00021928629,0.000048503065,0.000005880565,0.00025199947,0.000023309878,0.000017400276],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99835366,0.00006941194,0.0006473056,0.0004461575,0.000051243547,0.000432211],"domain_scores_gemma":[0.99921876,0.000015500671,0.00022629742,0.0004103398,0.00008715456,0.00004196139],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039344252,0.00021737744,0.0004113225,0.00021032014,0.000014609127,0.0000031118066,0.00031930872,0.00067276217,0.0000071039667],"category_scores_gemma":[0.000051212668,0.00022172583,0.00012925292,0.00025901315,0.00027676285,0.000002443165,0.00019397242,0.00015537244,0.000002153729],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045073678,0.00015683896,0.006216333,0.000028547294,0.000029931049,0.000016026765,0.00005584412,0.000013417191,0.9906523,0.0001356641,0.0000308298,0.0022135337],"study_design_scores_gemma":[0.0010008406,0.0003663661,0.0044080983,0.000023682336,0.000008795053,0.00003862312,0.000038842813,0.000003684132,0.98614275,0.00006102331,0.007707573,0.00019974148],"about_ca_topic_score_codex":0.00016598833,"about_ca_topic_score_gemma":0.00034849718,"teacher_disagreement_score":0.007676743,"about_ca_system_score_codex":0.000023351557,"about_ca_system_score_gemma":0.00006677027,"threshold_uncertainty_score":0.9041717},"labels":[],"label_agreement":null},{"id":"W1993936359","doi":"10.1128/jb.182.19.5620-5623.2000","title":"Mutation of the Lipopolysaccharide Core Glycosyltransferase Encoded by <i>waaG</i> Destabilizes the Outer Membrane of <i>Escherichia coli</i> by Interfering with Core Phosphorylation","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; University of Guelph","funders":"","keywords":"Bacterial outer membrane; Heptose; Biology; Escherichia coli; Phosphorylation; Lipopolysaccharide; Mutant; Mutation; Glucosyltransferase; Biochemistry; Cell biology; Gene","score_opus":0.007250815406857123,"score_gpt":0.21034552755618327,"score_spread":0.20309471214932615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993936359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982033,0.0004556731,0.00037798216,0.0004528728,0.00021083301,0.00018762537,0.00007631165,0.0000032321382,0.00003220653],"genre_scores_gemma":[0.9985266,0.0007554494,0.0002742619,0.00025646875,0.00007327086,0.0000050820054,0.000032374603,0.000019173789,0.000057374767],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988277,0.00010108669,0.0005951515,0.00017369376,0.00012005715,0.00018232007],"domain_scores_gemma":[0.99892306,0.000037135804,0.00049742294,0.0002880365,0.00021166664,0.000042683183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023793065,0.00017473918,0.00033652928,0.000026940703,0.000056234032,0.000010519501,0.0004017991,0.00026094491,0.00007106427],"category_scores_gemma":[0.00003391377,0.000099284414,0.00012060248,0.00011603123,0.00039988817,0.000009042178,0.000041901636,0.00022269077,5.1261475e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013008977,0.00006883588,0.0009591593,0.000019989739,0.00012520117,0.0000016892608,0.00013369403,0.0000614151,0.99506736,0.000012306098,0.00025226118,0.0019971794],"study_design_scores_gemma":[0.0008735489,0.0015722254,0.00088544824,0.000039717448,0.000087011635,0.00013667885,0.00009808501,0.000028939645,0.9921412,0.000033251887,0.003990897,0.0001130067],"about_ca_topic_score_codex":0.0000475355,"about_ca_topic_score_gemma":0.000059664293,"teacher_disagreement_score":0.003738636,"about_ca_system_score_codex":0.000013992326,"about_ca_system_score_gemma":0.000103821134,"threshold_uncertainty_score":0.4048701},"labels":[],"label_agreement":null},{"id":"W1994343217","doi":"10.1128/jb.183.5.1787-1791.2001","title":"Characterization of the Catalytic Activities of the PhoQ Histidine Protein Kinase of <i>Salmonella enterica</i> Serovar Typhimurium","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Autophosphorylation; Salmonella enterica; Biology; Phosphatase; Dephosphorylation; Biochemistry; Phosphorylation; Divalent; Histidine; Histidine kinase; Escherichia coli; Protein kinase A; Enzyme; Chemistry","score_opus":0.006828929423997359,"score_gpt":0.20201054946257802,"score_spread":0.19518162003858067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994343217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985239,0.00012897597,0.00008087241,0.0004972224,0.0004914188,0.00017800997,0.00004781694,0.0000015264566,0.00005026629],"genre_scores_gemma":[0.99917805,0.00028540325,0.00011131078,0.000062052415,0.00016176945,0.0000028691554,0.000012985504,0.000013888781,0.00017164426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884164,0.00014138148,0.00062102865,0.00013248518,0.00010813189,0.00015533682],"domain_scores_gemma":[0.9980537,0.000011145813,0.001304715,0.00039828478,0.00020328048,0.000028819397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019123992,0.00013928828,0.00037137113,0.000059247577,0.000031187843,0.000003634237,0.00049571623,0.000244652,0.000015050481],"category_scores_gemma":[0.000084507046,0.000083931416,0.00020638817,0.00015159721,0.00041848293,0.000006000775,0.00023219956,0.00015249837,2.3945026e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039287526,0.00011931176,0.0035240136,0.00004346047,0.00007659249,0.0000014328265,0.000033101544,0.0000038706967,0.9951067,0.000025963463,0.000028851342,0.0006438504],"study_design_scores_gemma":[0.00041762317,0.00068868534,0.03821445,0.00006112838,0.000042921583,0.00014190297,0.00002512062,0.0000037688267,0.9544346,0.000029267341,0.005867106,0.00007346238],"about_ca_topic_score_codex":0.00001893168,"about_ca_topic_score_gemma":0.000011207878,"teacher_disagreement_score":0.040672112,"about_ca_system_score_codex":0.000014986802,"about_ca_system_score_gemma":0.00012731418,"threshold_uncertainty_score":0.3422624},"labels":[],"label_agreement":null},{"id":"W1994943166","doi":"10.1007/s12104-012-9377-y","title":"1H, 13C and 15N resonance assignments of the periplasmic signalling domain of HasR, a TonB-dependent outer membrane heme transporter","year":2012,"lang":"en","type":"article","venue":"Biomolecular NMR Assignments","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nautical Research Society","funders":"Université Pierre et Marie Curie; Centre National de la Recherche Scientifique; Agence Nationale de la Recherche","keywords":"Periplasmic space; Bacterial outer membrane; Cytoplasm; Transporter; Cell biology; Heme; Biochemistry; Chemistry; Serratia marcescens; Biophysics; Biology; Gene; Escherichia coli; Enzyme","score_opus":0.008519254058776776,"score_gpt":0.2224718014097082,"score_spread":0.21395254735093144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994943166","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99380165,0.0014728603,0.003551017,0.00022260271,0.0002692157,0.00037458818,0.00008776489,0.000007673964,0.00021265176],"genre_scores_gemma":[0.9976968,0.00018367036,0.0014510027,0.00020136812,0.00008058371,0.000021669015,0.00004325562,0.000036219833,0.0002854313],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99813366,0.00011691778,0.00046847216,0.00039901413,0.00044601763,0.0004358986],"domain_scores_gemma":[0.99903005,0.000006862653,0.00026586174,0.00051786995,0.00006930099,0.00011002807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003662437,0.00027206185,0.00030178434,0.00005438251,0.000075087824,0.000016618693,0.0004125992,0.00036182473,0.000032933225],"category_scores_gemma":[0.00001994274,0.0002118263,0.00015956457,0.000114545,0.0002747234,0.000008565371,0.00030653618,0.00011630273,0.0000024516671],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012382236,0.0002040261,0.0064684134,0.00004193606,0.00012749062,0.0000032718162,0.00013173855,0.0000037078264,0.99143,0.00006088782,0.000055052442,0.001349682],"study_design_scores_gemma":[0.0010808704,0.00025481769,0.009423387,0.000050214996,0.000058943584,0.000020885234,0.000067494286,0.00001308155,0.9783657,0.000059443835,0.01036819,0.00023693434],"about_ca_topic_score_codex":0.000019407844,"about_ca_topic_score_gemma":0.0000057715256,"teacher_disagreement_score":0.0130642345,"about_ca_system_score_codex":0.00002277696,"about_ca_system_score_gemma":0.0000425485,"threshold_uncertainty_score":0.86380255},"labels":[],"label_agreement":null},{"id":"W1994970859","doi":"10.1021/bi000301l","title":"Mutational Evidence of Transition State Stabilization by Serine 88 in <i>Escherichia coli</i> Type I Signal Peptidase<sup>,</sup>","year":2000,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; Ohio State University","keywords":"Oxyanion hole; Escherichia coli; Serine; Chemistry; Mutant; Catalytic triad; Stereochemistry; Enzyme; Oxyanion; Proteases; Biochemistry; Catalysis","score_opus":0.006774284270303709,"score_gpt":0.2230053529242401,"score_spread":0.21623106865393638,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994970859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845415,0.00077809696,0.0001796251,0.00018561381,0.000019522855,0.00013709826,0.0001220357,0.000012671043,0.00011119386],"genre_scores_gemma":[0.9976992,0.00061867124,0.00044647625,0.00012144337,0.00007097411,0.000012739265,0.0006284338,0.000017808776,0.0003842275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989811,0.00003705593,0.00030441326,0.00034864713,0.00012797215,0.00020081508],"domain_scores_gemma":[0.9995352,0.000009756764,0.00007280968,0.00022231437,0.00010456865,0.00005535157],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116073126,0.00015949867,0.00014988532,0.00002285776,0.000027456566,0.0000126374225,0.00015912962,0.00026921756,0.00032857028],"category_scores_gemma":[0.000026696242,0.00017255564,0.00004765945,0.00020163126,0.00012209824,0.000006147924,0.000026580483,0.00009621851,0.000006073603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038673435,0.00011080854,0.00021292285,0.00007726011,0.000015658185,0.0000018818415,0.00004399749,0.0011828535,0.99570936,0.0000011598738,0.0005002085,0.0017571836],"study_design_scores_gemma":[0.0004567168,0.0002951605,0.00033991874,0.000055083066,0.000009470443,0.000006850311,0.00003838934,0.00081670046,0.9958209,0.00002597965,0.0019472201,0.00018762253],"about_ca_topic_score_codex":0.000026763886,"about_ca_topic_score_gemma":0.000006424845,"teacher_disagreement_score":0.0015695611,"about_ca_system_score_codex":0.000021221744,"about_ca_system_score_gemma":0.00012755772,"threshold_uncertainty_score":0.70366144},"labels":[],"label_agreement":null},{"id":"W1996679741","doi":"10.1074/jbc.m507154200","title":"The TagB Protein in Bacillus subtilis 168 Is an Intracellular Peripheral Membrane Protein That Can Incorporate Glycerol Phosphate onto a Membrane-bound Acceptor in Vitro","year":2005,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Teichoic acid; Biochemistry; Bacillus subtilis; Peptidoglycan; Biology; Intracellular; Cell wall; Bacteria","score_opus":0.015501554003146066,"score_gpt":0.22535282637647147,"score_spread":0.2098512723733254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996679741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99570453,0.0015102077,0.000010328895,0.0021345343,0.000081171376,0.0004296714,0.000039489114,0.000009468773,0.00008057868],"genre_scores_gemma":[0.9973493,0.0005730709,0.0009077941,0.00023396128,0.0005205054,0.000048300564,0.000045146404,0.000025986792,0.0002959236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99768466,0.0001599562,0.0008191639,0.0004982379,0.00024079578,0.0005971804],"domain_scores_gemma":[0.99864346,0.000015031353,0.0005545245,0.00044188695,0.00013838976,0.00020673117],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007811285,0.0003771643,0.00049395085,0.000045065437,0.000105612744,0.0001109949,0.0008390412,0.0009880692,0.0001507767],"category_scores_gemma":[0.00014447654,0.00024890635,0.00018983292,0.00019227616,0.00037712284,0.000014977226,0.0002060493,0.00076362316,0.0000021692051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021864984,0.0002419688,0.00048502203,0.000027033659,0.00004145801,0.000048566166,0.000049186187,0.0000169979,0.99116516,0.0000032185883,0.000021772647,0.005713137],"study_design_scores_gemma":[0.0016191204,0.0005690739,0.00041513986,0.00003265279,0.000008852982,0.00009473233,0.0001609482,0.00007362643,0.982448,0.00008475651,0.014168055,0.00032506805],"about_ca_topic_score_codex":0.000057732545,"about_ca_topic_score_gemma":0.0002370834,"teacher_disagreement_score":0.014146281,"about_ca_system_score_codex":0.0001411704,"about_ca_system_score_gemma":0.00021372674,"threshold_uncertainty_score":0.9999963},"labels":[],"label_agreement":null},{"id":"W1997949364","doi":"10.1111/j.1365-2958.2008.06186.x","title":"Regulation of transcription by acetate in <i>Escherichia coli</i>: <i>in vivo</i> and <i>in vitro</i> comparisons","year":2008,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Emergent BioSolutions (Canada)","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Transcription (linguistics); RNA polymerase; Promoter; In vitro; In vivo; Molecular biology; Biochemistry; Escherichia coli; RNA polymerase II; Transcription factor; Psychological repression; Sigma factor; Transcription factor II B; Cell biology; Gene expression; Gene; Genetics","score_opus":0.005868303079774539,"score_gpt":0.19507435251080085,"score_spread":0.1892060494310263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997949364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969475,0.0019316399,0.00036152237,0.00025293356,0.00007335962,0.0002570279,0.00006933887,0.0000059940076,0.00010065981],"genre_scores_gemma":[0.99771404,0.0007574501,0.00095185434,0.0002691716,0.000009851435,0.000016929169,0.00021572779,0.00001797985,0.0000470204],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870956,0.00014812328,0.00040080494,0.00040976508,0.000030254145,0.00030147514],"domain_scores_gemma":[0.9996277,0.0000062720756,0.00009521229,0.0002142671,0.000024915733,0.000031615473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014064631,0.00017846165,0.00033017003,0.00012706606,0.000019331424,0.0000034880168,0.00013883416,0.0004470448,0.0000056139047],"category_scores_gemma":[0.0000114292525,0.00019498995,0.00005025815,0.00020806801,0.00025763398,0.0000032814573,0.00006177571,0.00015376715,9.4219996e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033997843,0.00012463253,0.001791815,0.000015031291,0.000010717789,0.000009128942,0.000037446458,0.00005129615,0.99724805,0.0000133053845,0.00026242854,0.000096150696],"study_design_scores_gemma":[0.0015057679,0.000161889,0.0046093543,0.000011613484,0.000005407625,0.000041548486,0.000013960677,0.000037441594,0.9783917,0.0000192638,0.0150193805,0.00018265795],"about_ca_topic_score_codex":0.00009654334,"about_ca_topic_score_gemma":0.00024067417,"teacher_disagreement_score":0.018856354,"about_ca_system_score_codex":0.00001591987,"about_ca_system_score_gemma":0.00003499968,"threshold_uncertainty_score":0.7951459},"labels":[],"label_agreement":null},{"id":"W1997955858","doi":"10.1111/j.1365-2958.2009.06880.x","title":"Molecular characterization of staphyloferrin B biosynthesis in <i>Staphylococcus aureus</i>","year":2009,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Siderophore; Biosynthesis; Biochemistry; Biology; Enzyme; Citric acid; Molecular mass; Electrospray ionization; Staphylococcus aureus; Bacteria; Mass spectrometry; Chemistry; Gene; Chromatography","score_opus":0.003458493512752702,"score_gpt":0.1976339298949503,"score_spread":0.19417543638219759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997955858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967031,0.00047714007,0.0014451327,0.000610956,0.00012398786,0.00030296066,0.000092512484,0.000019222889,0.00022499451],"genre_scores_gemma":[0.9976598,0.00015665469,0.0006057462,0.0010002222,0.000039639934,0.000011512849,0.0004790035,0.00002632116,0.000021087113],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983613,0.00014695547,0.00045823876,0.00055050536,0.00005353335,0.0004294715],"domain_scores_gemma":[0.99910694,0.000004991129,0.00018359743,0.0005626449,0.00008542303,0.000056397756],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015933841,0.00027424918,0.00036094693,0.00022388081,0.000024842562,0.000010815879,0.0003905275,0.00060168316,0.000017544253],"category_scores_gemma":[0.00004446199,0.0002817064,0.00014961002,0.0002824826,0.0001575636,0.0000030311537,0.00012149754,0.00014413742,0.0000066044654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001073297,0.00015482513,0.00035987762,0.000010493256,0.000035132565,0.00002329529,0.000013054965,0.000017072487,0.9959706,0.00041514164,0.000028140526,0.0028650332],"study_design_scores_gemma":[0.0005368986,0.0005763972,0.00313258,0.000016369651,0.000014725978,0.000015161803,0.0000074348413,0.000005938804,0.98353016,0.00012377993,0.011755703,0.00028483552],"about_ca_topic_score_codex":0.000010890408,"about_ca_topic_score_gemma":0.000011796195,"teacher_disagreement_score":0.012440429,"about_ca_system_score_codex":0.000017054814,"about_ca_system_score_gemma":0.00005673707,"threshold_uncertainty_score":0.9999635},"labels":[],"label_agreement":null},{"id":"W1998790040","doi":"10.4161/cib.4.1.14162","title":"Regulation of symmetric bacterial cell division by MinE: What is the role of conformational dynamics?","year":2011,"lang":"en","type":"article","venue":"PubMed","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Cell division; Division (mathematics); Bacterial cell structure; Cell; Protein structure; Cell biology; Biophysics; Bacterial protein; Chemistry; Bacteria; Computational biology; Biology; Biochemistry; Genetics","score_opus":0.005536045691687869,"score_gpt":0.16713893148972483,"score_spread":0.16160288579803697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998790040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99747944,0.0006489019,0.000068873196,0.0000759349,0.00019674657,0.00024874965,0.00007815848,0.0000031445268,0.0012000632],"genre_scores_gemma":[0.9990856,0.00032022753,0.00010114815,0.000031521926,0.00003909272,0.00003966691,0.0002468696,0.0000067770166,0.00012906907],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99940735,0.000022483093,0.00022815756,0.00012125293,0.0000889621,0.000131823],"domain_scores_gemma":[0.9994682,0.0000067417413,0.00019240536,0.0002235481,0.00008332219,0.000025768379],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014033382,0.00007699824,0.0000965798,0.00004582444,0.000022258595,0.000011857744,0.00018385808,0.00017892929,0.00003059781],"category_scores_gemma":[0.000017722752,0.00005762959,0.0000535436,0.0001012083,0.00009240904,0.000007704762,0.00009643587,0.000034521596,0.000001107127],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009328863,0.00007481182,0.0012472544,0.00001318566,0.000026385596,2.144154e-8,0.000042947588,6.019081e-7,0.884088,0.00048105945,0.00029785547,0.113634616],"study_design_scores_gemma":[0.00024859663,0.00007986117,0.08329825,0.0000022376016,0.000011957241,8.1204513e-7,0.00006495878,0.00008346089,0.9094569,0.0002952388,0.0063930494,0.00006469352],"about_ca_topic_score_codex":0.00002580396,"about_ca_topic_score_gemma":0.000005096716,"teacher_disagreement_score":0.11356992,"about_ca_system_score_codex":0.0000063396997,"about_ca_system_score_gemma":0.00001301169,"threshold_uncertainty_score":0.23500665},"labels":[],"label_agreement":null},{"id":"W1998847489","doi":"10.1073/pnas.0811669106","title":"Pathogenic adaptation of intracellular bacteria by rewiring a <i>cis</i> -regulatory input function","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; McMaster University","funders":"Ontario Ministry of Research and Innovation; Canadian Institutes of Health Research; National Institute of General Medical Sciences; Public Health Agency; Public Health Agency of Canada; National Institutes of Health; National Science Foundation","keywords":"Biology; Horizontal gene transfer; Genetics; Gene; Salmonella; Regulator gene; Pathogenicity island; Mutation; Adaptation (eye); Regulatory sequence; Regulation of gene expression; Pathogen; Mutant; Function (biology); Computational biology; Bacteria; Phylogenetics","score_opus":0.014600267394006088,"score_gpt":0.23548007985671207,"score_spread":0.220879812462706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998847489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986093,0.00040435448,0.00002152246,0.00061131007,0.000026410366,0.00009602137,0.000015830637,0.000003814957,0.0002114036],"genre_scores_gemma":[0.9986188,0.00011090107,0.001019971,0.00013259247,0.00006714269,0.0000021824121,0.0000017937085,0.0000028470315,0.000043808668],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991078,0.0000058116357,0.00027194238,0.00019686713,0.00031591376,0.00010170409],"domain_scores_gemma":[0.9994131,0.0000057274196,0.00037400034,0.000013013458,0.00017635537,0.000017805005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049997855,0.00007575843,0.00010559495,0.00006216069,0.000061769395,0.000007873144,0.00035017115,0.00017996207,0.0000036284382],"category_scores_gemma":[0.000079084566,0.0000575601,0.000058740938,0.00024768044,0.00032885847,0.0000145690565,0.0000551822,0.00006836744,2.0130678e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040493287,0.000031469015,0.00023496163,0.000013265934,0.000009088819,8.6328195e-10,0.000018354434,0.000028671078,0.99533796,0.0015877106,0.00024984076,0.0024482072],"study_design_scores_gemma":[0.00013416758,0.0002826199,0.014551911,0.000021611084,0.000010897332,0.0000029253129,0.00003640577,0.00014025951,0.9802818,0.0031983922,0.0012781862,0.00006087827],"about_ca_topic_score_codex":0.0000014210502,"about_ca_topic_score_gemma":5.9484023e-8,"teacher_disagreement_score":0.01505619,"about_ca_system_score_codex":0.0000074893546,"about_ca_system_score_gemma":0.000023220862,"threshold_uncertainty_score":0.23472328},"labels":[],"label_agreement":null},{"id":"W1999085178","doi":"10.1186/s12866-015-0371-2","title":"A tyrosine phosphorylation switch controls the interaction between the transmembrane modulator protein Wzd and the tyrosine kinase Wze of Lactobacillus rhamnosus","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Tyrosine phosphorylation; Phosphorylation; SH2 domain; Tyrosine; Lactobacillus rhamnosus; Biochemistry; Protein phosphorylation; Tyrosine kinase; Proto-oncogene tyrosine-protein kinase Src; Molecular biology; Protein kinase A; Signal transduction; Lactobacillus","score_opus":0.01428884058240881,"score_gpt":0.22786294949926103,"score_spread":0.21357410891685222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999085178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921662,0.0026543976,0.001000232,0.0028841272,0.00021878771,0.00092703715,0.000091930546,0.000011671985,0.00004561292],"genre_scores_gemma":[0.9989125,0.00012511473,0.00017590243,0.00019743,0.00024341891,0.000058176127,0.00014451034,0.000017177359,0.00012577884],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987371,0.0003047198,0.00036118948,0.00030672486,0.000051520987,0.00023877154],"domain_scores_gemma":[0.9990319,0.000074974174,0.00022783712,0.00048149005,0.00014286725,0.00004091207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000634831,0.00019782022,0.00029329548,0.000027917891,0.00010960699,0.000025356276,0.00032061356,0.0003462387,0.000008122342],"category_scores_gemma":[0.00015802827,0.00009623918,0.00009837349,0.000105175204,0.00074458704,0.0000039332213,0.00014037611,0.00019142975,0.000003977832],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011022456,0.000028492605,0.00067710975,0.000013121382,0.00007344509,2.663515e-7,0.00008049857,0.000023315062,0.99588245,0.00034510324,0.00017737405,0.0015966045],"study_design_scores_gemma":[0.003966539,0.0005592942,0.0021483905,0.000015924043,0.00009081814,0.000059103004,0.0001493202,0.00011081967,0.96220267,0.00026508642,0.030261723,0.00017034037],"about_ca_topic_score_codex":0.00012651444,"about_ca_topic_score_gemma":0.00017477966,"teacher_disagreement_score":0.033679783,"about_ca_system_score_codex":0.000014212272,"about_ca_system_score_gemma":0.000079901525,"threshold_uncertainty_score":0.39245197},"labels":[],"label_agreement":null},{"id":"W1999119506","doi":"10.1006/abio.2000.4707","title":"Assay for Lytic Transglycosylases: A Family of Peptidoglycan Lyases","year":2000,"lang":"en","type":"article","venue":"Analytical Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Peptidoglycan; Chemistry; Muramic acid; Hydrolysis; Sodium borohydride; Biochemistry; Lysis; Chromatography; Enzyme","score_opus":0.009802858443663812,"score_gpt":0.24783660434424068,"score_spread":0.23803374590057685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999119506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99567974,0.00040340846,0.00049023627,0.00031965226,0.00004107547,0.00017531622,0.00023257958,0.00001907793,0.002638933],"genre_scores_gemma":[0.9953832,0.0002584684,0.0010395857,0.00024148323,0.00024490882,0.000024098852,0.00028217962,0.000025536168,0.0025005348],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986758,0.00001928208,0.00035790273,0.00047319205,0.0001238266,0.00034995397],"domain_scores_gemma":[0.9991983,0.000031254105,0.00006427599,0.00047872477,0.00009940927,0.00012804737],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001504022,0.00021585118,0.00027843122,0.000031244068,0.000047020185,0.000015987087,0.0003109185,0.0004446159,0.00021311309],"category_scores_gemma":[0.00012161935,0.00020290016,0.0002608706,0.00013360305,0.00028137752,0.0000018045193,0.000038550734,0.00008869946,0.000010805054],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002737146,0.0001420477,0.00010033062,0.000067001456,0.00009514014,0.0000017608523,0.000003814009,0.0000082510205,0.98750424,0.00008236945,0.0023112164,0.009410114],"study_design_scores_gemma":[0.00069702056,0.00045898696,0.0001544396,0.000021495985,0.00008608576,0.000012808253,0.000031181906,0.00027592477,0.9550862,0.00011489492,0.04280431,0.00025670763],"about_ca_topic_score_codex":0.000013292844,"about_ca_topic_score_gemma":0.000004201366,"teacher_disagreement_score":0.040493093,"about_ca_system_score_codex":0.000012043152,"about_ca_system_score_gemma":0.000118171716,"threshold_uncertainty_score":0.82740283},"labels":[],"label_agreement":null},{"id":"W1999194137","doi":"10.1128/jb.01342-06","title":"<i>nalD</i> Encodes a Second Repressor of the <i>mexAB-oprM</i> Multidrug Efflux Operon of <i>Pseudomonas aeruginosa</i>","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"TetR; Biology; Repressor; Operon; Efflux; Pseudomonas putida; Pseudomonas aeruginosa; Genetics; Mutant; Promoter; Microbiology; Gene; Gene expression; Bacteria","score_opus":0.0053726930426336705,"score_gpt":0.2094403676889128,"score_spread":0.20406767464627915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999194137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99656165,0.00063996814,0.00008544464,0.0015571166,0.0005959391,0.00015459365,0.00006313688,0.0000038388953,0.00033829804],"genre_scores_gemma":[0.9968085,0.00022172535,0.0013240263,0.00084209774,0.00054006313,0.0000033495348,0.00001591552,0.000022892655,0.00022140174],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99806863,0.00021422397,0.001011187,0.00026272415,0.00015016172,0.00029307223],"domain_scores_gemma":[0.99782807,0.00004802657,0.0012126137,0.00055653235,0.0003081874,0.00004656572],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038570273,0.00022360873,0.00056609075,0.00008387564,0.00004945795,0.000010155343,0.0007001692,0.0005280109,0.000049676044],"category_scores_gemma":[0.00008679034,0.00015297107,0.0003489026,0.00012732846,0.00052307616,0.00000796067,0.00022745655,0.00032270476,0.0000013517035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002294933,0.00012531721,0.0065841223,0.000037741516,0.00009391622,0.000005648097,0.000026417289,0.000051920062,0.9886351,0.000054916498,0.0037696122,0.00038579755],"study_design_scores_gemma":[0.0009806583,0.0008181343,0.018324584,0.000036420843,0.000052647178,0.00037554672,0.000021768923,0.000005173109,0.9116575,0.00017117606,0.0674131,0.00014325547],"about_ca_topic_score_codex":0.000050804036,"about_ca_topic_score_gemma":0.000067274865,"teacher_disagreement_score":0.07697756,"about_ca_system_score_codex":0.000013984306,"about_ca_system_score_gemma":0.00014505963,"threshold_uncertainty_score":0.62379795},"labels":[],"label_agreement":null},{"id":"W1999678283","doi":"10.1016/j.mimet.2012.04.004","title":"Can dead bacterial cells be defined and are genes expressed after cell death?","year":2012,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Gene; Gene expression; Bacteria; Programmed cell death; Microbiology; Bacterial cell structure; Cell biology; Cell division; Cell; Genetics; Apoptosis","score_opus":0.024046989658138566,"score_gpt":0.2851739770509438,"score_spread":0.26112698739280527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999678283","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99259883,0.0045665787,0.0014654204,0.0003972048,0.00079605426,0.00009138401,0.000054026135,0.00000825851,0.000022247239],"genre_scores_gemma":[0.82038766,0.0017927592,0.17663729,0.00037276288,0.00072736817,0.0000042767847,0.00001035873,0.000020637754,0.00004686073],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99852943,0.0004166439,0.0004124072,0.00022045984,0.00004620737,0.00037485728],"domain_scores_gemma":[0.9991235,0.0000522789,0.00035011186,0.0001977347,0.000104220555,0.00017215365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006945589,0.00021992525,0.00037284158,0.00005529233,0.00003964938,0.000028232826,0.00022510646,0.00058707775,0.000046576097],"category_scores_gemma":[0.00010223033,0.00015063932,0.00015312272,0.0000494164,0.00013522603,0.0000046396494,0.00023719501,0.00020317145,0.0000010768383],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003338744,0.000108214605,0.0023703037,0.000011857746,0.00003984637,0.000005295364,0.000016642616,5.777824e-7,0.99238306,0.0000057232214,0.0003216129,0.0044029644],"study_design_scores_gemma":[0.0005082773,0.00052476145,0.00606485,0.000008895168,0.000046398858,0.00012952223,0.000027742777,3.3218546e-7,0.8623315,0.00005190046,0.13012479,0.00018101408],"about_ca_topic_score_codex":0.0000028246016,"about_ca_topic_score_gemma":0.0000021836736,"teacher_disagreement_score":0.17517188,"about_ca_system_score_codex":0.0000119909,"about_ca_system_score_gemma":0.000031515436,"threshold_uncertainty_score":0.6142893},"labels":[],"label_agreement":null},{"id":"W2000087003","doi":"10.1074/jbc.m111.295857","title":"In Vitro Reconstruction of the Chain Termination Reaction in Biosynthesis of the Escherichia coli O9a O-Polysaccharide","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Innovates; University of Alberta; University of Guelph","funders":"Canadian Institutes of Health Research; Alberta Innovates","keywords":"Chemistry; Methylation; Biochemistry; Periplasmic space; Escherichia coli; Biosynthesis; Phosphorylation; Acceptor; ATP-binding cassette transporter; Enzyme; Stereochemistry; Transporter; Gene","score_opus":0.014968037671801371,"score_gpt":0.2133207027729151,"score_spread":0.1983526651011137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000087003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992694,0.00010129768,0.000005865206,0.0002182217,0.00019131092,0.000065552755,0.00000725276,9.688047e-7,0.0001400945],"genre_scores_gemma":[0.99936974,0.00020594859,0.00029116712,0.00002939911,0.000077281096,0.0000019782187,9.230165e-7,0.0000038278517,0.000019740326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991803,0.00007321611,0.00045472378,0.00011672831,0.00007080651,0.000104220155],"domain_scores_gemma":[0.9991368,0.000013233506,0.00057911465,0.00018130457,0.00007128084,0.000018252309],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030332827,0.00008683951,0.00018320151,0.000027701744,0.000015703554,0.0000021342507,0.00028959406,0.00037966788,0.000017231754],"category_scores_gemma":[0.00024131969,0.00004840284,0.00012466667,0.00014370368,0.00020345076,0.0000038902617,0.00008972256,0.0002016154,1.1331376e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022965542,0.00009096547,0.0059282426,0.0000126317755,0.000011700318,7.1137015e-7,0.000017852806,6.818895e-7,0.99110717,0.0000033196777,0.000005685117,0.0025914107],"study_design_scores_gemma":[0.00023057636,0.00008343013,0.055724073,0.000032392916,0.000007889569,0.00004411947,0.00008173721,0.0000052201476,0.94343674,0.0001769681,0.00012433088,0.000052496216],"about_ca_topic_score_codex":0.00002121058,"about_ca_topic_score_gemma":0.0000066154244,"teacher_disagreement_score":0.049795832,"about_ca_system_score_codex":0.00002314866,"about_ca_system_score_gemma":0.000053056745,"threshold_uncertainty_score":0.29283464},"labels":[],"label_agreement":null},{"id":"W2000125435","doi":"10.1016/j.jasms.2004.02.012","title":"Electrospray/mass spectrometric identification and analysis of 4-hydroxy-2-alkylquinolines (HAQs) produced by <i>Pseudomonas aeruginosa</i>","year":2004,"lang":"en","type":"article","venue":"Journal of the American Society for Mass Spectrometry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":253,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Chemistry; Electrospray ionization; Alkyl; Side chain; Electrospray; Biosynthesis; Stereochemistry; Mass spectrometry; Degree of unsaturation; Quinoline; Medicinal chemistry; Organic chemistry; Chromatography; Enzyme","score_opus":0.0049824617464045255,"score_gpt":0.23609170777181185,"score_spread":0.23110924602540733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000125435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97701406,0.002056841,0.018500088,0.0019811254,0.00014192626,0.00020248111,0.000088138135,0.0000070512915,0.00000826845],"genre_scores_gemma":[0.98093015,0.0028942644,0.015647758,0.00022463014,0.0001884953,0.000005664242,0.000026481815,0.00002558775,0.000056976332],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984032,0.00003753848,0.00060917303,0.0003339376,0.00028464387,0.000331539],"domain_scores_gemma":[0.99769074,0.000027730757,0.0014954428,0.00044709607,0.0002631502,0.00007583165],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048422892,0.00021088833,0.00058517593,0.00028353938,0.00010273667,0.000038916092,0.00051937415,0.00014258135,0.0000028802626],"category_scores_gemma":[0.00015829568,0.00016054342,0.0009939636,0.0026288922,0.0004011361,0.000010153668,0.00007954705,0.00021521389,2.1996676e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010686584,0.00010163934,0.0023512233,0.000017196051,0.0018264978,2.5842544e-7,0.000020175223,0.00005212663,0.99443257,0.000089943,0.00068446645,0.00031701414],"study_design_scores_gemma":[0.00067910494,0.0012259799,0.0088695055,0.000006905518,0.0010103264,0.000021362042,0.00012152042,0.000027534177,0.9862039,0.0005361359,0.0011145195,0.00018319931],"about_ca_topic_score_codex":0.000015675976,"about_ca_topic_score_gemma":0.000002692114,"teacher_disagreement_score":0.008228688,"about_ca_system_score_codex":0.00009130583,"about_ca_system_score_gemma":0.00011157541,"threshold_uncertainty_score":0.65467703},"labels":[],"label_agreement":null},{"id":"W2000165838","doi":"10.1186/1471-2105-9-373","title":"Increasing the efficiency of bacterial transcription simulations: When to exclude the genome without loss of accuracy","year":2008,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"College of Family Physicians of Canada; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Computational biology; DNA microarray; Genome; Computer science; Genetics; Biology; Bioinformatics; Gene; Gene expression","score_opus":0.022106200086113265,"score_gpt":0.24717745227963084,"score_spread":0.22507125219351756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000165838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.979013,0.00010702896,0.020016205,0.0001464326,0.00013787864,0.0003965379,0.00007591425,0.000007511298,0.000099437355],"genre_scores_gemma":[0.9835827,0.000119602555,0.015969127,0.000106918866,0.00011292522,0.0000059963736,0.000073306284,0.000009605134,0.000019836696],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905384,0.000055245622,0.00048103757,0.00010135204,0.000138079,0.0001704415],"domain_scores_gemma":[0.9991042,0.000043039636,0.00023508754,0.00046408075,0.000120656005,0.000032928074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025414958,0.00012308524,0.00015807177,0.000046821802,0.00013009035,0.000013947789,0.00039362436,0.00015848975,0.00001731783],"category_scores_gemma":[0.00021507252,0.000074165364,0.000081194776,0.00013207865,0.00026745914,0.000007395857,0.00011788726,0.00006862255,0.000003646589],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001673767,0.00004006693,0.0010784435,0.00004049133,0.000022175129,8.177037e-8,0.0011693778,0.0007477316,0.9961539,0.000061281986,0.0000353842,0.0004837262],"study_design_scores_gemma":[0.0016481691,0.0011153336,0.026332468,0.00005568314,0.000104165396,0.00015145302,0.0008886049,0.010189128,0.92639,0.00016649027,0.032482464,0.00047602525],"about_ca_topic_score_codex":0.000025287301,"about_ca_topic_score_gemma":0.000035704856,"teacher_disagreement_score":0.06976385,"about_ca_system_score_codex":0.0000074381805,"about_ca_system_score_gemma":0.00010197542,"threshold_uncertainty_score":0.30243757},"labels":[],"label_agreement":null},{"id":"W2000309642","doi":"10.1016/j.gene.2003.08.015","title":"Blocking the T4 lysis inhibition phenotype","year":2003,"lang":"en","type":"article","venue":"Gene","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Prophage; Lysis; Escherichia coli; Lysogenic cycle; Molecular biology; Periplasmic space; Plasmid; Phenotype; Gene; Lysogen; Lambda phage; Microbiology; Bacteriophage; Genetics","score_opus":0.006933077502407847,"score_gpt":0.2045746195947404,"score_spread":0.19764154209233256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000309642","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99621993,0.0007493092,0.0008343936,0.00040829816,0.00022308518,0.000082365346,0.0000065113472,0.000011988495,0.0014641236],"genre_scores_gemma":[0.99790674,0.00022559182,0.0008967369,0.00040288104,0.00020649984,0.000009349327,0.000037132777,0.000011873546,0.0003031935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943346,0.00004178923,0.00010411225,0.00019666305,0.000054935525,0.00016907188],"domain_scores_gemma":[0.9995887,0.0000029006767,0.00004054652,0.00030504246,0.00003770663,0.000025085074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012473941,0.000086693646,0.000065487555,0.000018180895,0.000097567565,0.000018616302,0.00009241036,0.00015702285,0.0000450779],"category_scores_gemma":[0.00003915524,0.00006330219,0.000050346855,0.00008983696,0.00005862167,6.6585267e-7,0.000055068,0.000057767193,0.000023703742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007809651,0.000014800749,0.00011892355,0.0000014162392,0.000020111333,8.6165676e-7,0.000008881911,0.00001834073,0.9960334,0.00040760048,0.00051463,0.002853248],"study_design_scores_gemma":[0.00014573162,0.000071862494,0.0002865427,0.0000013519185,0.000013212917,0.0000137268535,0.00001663635,0.000004740123,0.87046427,0.0003127508,0.12858455,0.00008463491],"about_ca_topic_score_codex":0.0000070021956,"about_ca_topic_score_gemma":0.000022084658,"teacher_disagreement_score":0.12806992,"about_ca_system_score_codex":0.0000050346075,"about_ca_system_score_gemma":0.00002615515,"threshold_uncertainty_score":0.25813884},"labels":[],"label_agreement":null},{"id":"W2000333675","doi":"10.1074/jbc.m301076200","title":"The Twin-arginine Leader-binding Protein, DmsD, Interacts with the TatB and TatC Subunits of the Escherichia coli Twin-arginine Translocase","year":2003,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Fondation pour la Recherche Médicale; University of East Anglia; University of Alberta","keywords":"Translocase; Twin-arginine translocation pathway; Arginine; TATB; Escherichia coli; Chemistry; Biochemistry; Cell biology; Biology; Membrane transport protein; Amino acid; Chromosomal translocation; Membrane protein; Membrane; Gene","score_opus":0.013809643013539152,"score_gpt":0.2229986144427431,"score_spread":0.20918897142920395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000333675","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99549973,0.0014920727,0.000047165373,0.0023960122,0.0000957306,0.00020148062,0.000014688726,0.0000041310936,0.00024897957],"genre_scores_gemma":[0.9985082,0.00046640987,0.0002939191,0.00015237383,0.00016334737,0.0000088648285,0.0000050215235,0.000014465108,0.00038740723],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998744,0.00014349543,0.0004304014,0.00022306819,0.00015809119,0.00030093783],"domain_scores_gemma":[0.9988162,0.00007102591,0.00049811957,0.00032611954,0.00019693864,0.00009158927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005293572,0.00022988157,0.00028079373,0.000012437478,0.00018729358,0.000041477055,0.00051391893,0.00033765333,0.000028870025],"category_scores_gemma":[0.00034145176,0.000093795126,0.00013407692,0.00017643756,0.0008144678,0.000004552729,0.000106772415,0.00053356,4.932801e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034273716,0.00006853297,0.00047985674,0.000020238724,0.00010087682,0.00000925292,0.000032129385,0.0000053788062,0.998092,0.000031659823,0.00023694527,0.00058039033],"study_design_scores_gemma":[0.0007788941,0.0007135935,0.00080104376,0.00004979054,0.000038145,0.0003041767,0.0004776715,0.000002701526,0.9578021,0.00004262229,0.03884586,0.00014340733],"about_ca_topic_score_codex":0.0000019772426,"about_ca_topic_score_gemma":0.000005345496,"teacher_disagreement_score":0.040289905,"about_ca_system_score_codex":0.000011683563,"about_ca_system_score_gemma":0.0001226582,"threshold_uncertainty_score":0.38248542},"labels":[],"label_agreement":null},{"id":"W2000335716","doi":"10.1002/prot.22459","title":"NMR structure of protein YvyC from <i>Bacillus subtilis</i> reveals unexpected structural similarity between two PFAM families","year":2009,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; University at Buffalo; National Institutes of Health","keywords":"Flagellin; Flagellum; Bacillus subtilis; Operon; Biology; Structural genomics; Genetics; Gene; Protein family; Sequence alignment; Accession number (library science); Computational biology; Protein structure; Peptide sequence; Biochemistry; GenBank; Mutant; Bacteria","score_opus":0.006314153179001951,"score_gpt":0.21311180897919726,"score_spread":0.20679765580019532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000335716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951531,0.00036097373,0.0016216879,0.0002130416,0.0001931974,0.0009157315,0.0013850249,0.00005851102,0.00009871841],"genre_scores_gemma":[0.9809522,0.000056191908,0.016958088,0.00027403337,0.00041296374,0.000005069576,0.0012909892,0.000019611234,0.000030852643],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981732,0.00006260567,0.00070813583,0.00039959638,0.00027213086,0.00038434763],"domain_scores_gemma":[0.9986273,0.000009651673,0.0004446648,0.0005502104,0.00023089029,0.0001373073],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007483242,0.0004297112,0.00048211502,0.00013037132,0.0001833361,0.00008190344,0.00028384628,0.00070728693,0.00006743455],"category_scores_gemma":[0.00009736272,0.0003417976,0.000107586115,0.0002649338,0.00023555804,0.000029124769,0.00015787705,0.00035582646,0.0000010644262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002330843,0.000012042361,0.0027037289,0.00006993684,0.00009193047,4.2329418e-7,0.0001059128,0.0000136943345,0.9699949,0.00020691032,0.000074808515,0.026492624],"study_design_scores_gemma":[0.0019966247,0.0015720183,0.060083866,0.00005590783,0.00011757635,0.000016826762,0.00025287512,0.00025964924,0.92091966,0.010614171,0.0034678539,0.00064295874],"about_ca_topic_score_codex":0.000065661734,"about_ca_topic_score_gemma":0.000101043945,"teacher_disagreement_score":0.057380136,"about_ca_system_score_codex":0.000019824527,"about_ca_system_score_gemma":0.00007096503,"threshold_uncertainty_score":0.9999034},"labels":[],"label_agreement":null},{"id":"W2000416763","doi":"10.1016/j.jmb.2006.02.034","title":"Structural and Biochemical Study of Effector Molecule Recognition by the E.coli Glyoxylate and Allantoin Utilization Regulatory Protein AllR","year":2006,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Glyoxylate cycle; Effector; Tetramer; Biochemistry; Dimer; Chemistry; Homotetramer; Biology; Stereochemistry; Enzyme; Gene","score_opus":0.007738832111376928,"score_gpt":0.23537686766273233,"score_spread":0.2276380355513554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000416763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99595296,0.003132251,0.00031399535,0.00016935216,0.000065783075,0.00032932576,0.00002132107,0.0000031851137,0.000011847657],"genre_scores_gemma":[0.9993411,0.000097778604,0.0003381617,0.00004979875,0.000084519306,0.0000060761927,0.000058021495,0.000013899579,0.000010648844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989521,0.0002052811,0.00038333278,0.00021712796,0.00008604278,0.00015609729],"domain_scores_gemma":[0.9993078,0.000010781134,0.00034190185,0.0001675025,0.0001308453,0.000041133862],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023505154,0.00015045726,0.00022771915,0.00005852973,0.00004524914,0.00001393937,0.00014183986,0.00029108985,0.0000032636667],"category_scores_gemma":[0.000058461126,0.000105400926,0.0000514649,0.00006890927,0.0002244009,0.0000029777882,0.00011173288,0.00013109103,1.8636733e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019387188,0.00006972196,0.0007725885,0.000012763694,0.00007414355,0.0000041472,0.000014982056,0.0000020608165,0.9962923,0.000032753,0.00011906469,0.002411608],"study_design_scores_gemma":[0.001225198,0.0023272028,0.0050532273,0.000013726479,0.000053404958,0.00013634405,0.000040246272,0.000019485697,0.9899872,0.00052149175,0.0004955084,0.00012699803],"about_ca_topic_score_codex":0.00003593301,"about_ca_topic_score_gemma":0.000011936926,"teacher_disagreement_score":0.006305129,"about_ca_system_score_codex":0.000008463689,"about_ca_system_score_gemma":0.00003481889,"threshold_uncertainty_score":0.4298125},"labels":[],"label_agreement":null},{"id":"W2001535876","doi":"10.1038/488165a","title":"Dynamic binding","year":2012,"lang":"en","type":"letter","venue":"Nature","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Biophysics; Protein dynamics; Nuclear magnetic resonance spectroscopy; Microsecond; DNA; Protein structure; Chemistry; DNA-binding protein; Crystallography; Nuclear magnetic resonance; Gene; Physics; Biology; Biochemistry; Transcription factor","score_opus":0.004112524813624568,"score_gpt":0.2291423562383467,"score_spread":0.22502983142472213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001535876","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11549232,0.018822828,0.000048112375,0.8532796,0.008020631,0.0005108731,0.0006200056,0.00010553737,0.0031000988],"genre_scores_gemma":[0.12335039,0.0011007056,0.0011401162,0.83761173,0.0112226885,0.00002614317,0.0085918335,0.00016263194,0.016793787],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988307,0.000031887037,0.0001417664,0.0004210077,0.00013263675,0.0004420114],"domain_scores_gemma":[0.99926,0.0000044423236,0.00010632668,0.0005434617,0.000049822484,0.000035954265],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00006871681,0.00028001188,0.00020144769,0.00008271881,0.000051090195,0.00002665817,0.00041805397,0.02099187,0.00007126747],"category_scores_gemma":[0.000027647195,0.000249144,0.00013597349,0.00007652229,0.00006728453,8.832499e-7,0.00021320776,0.0061019505,0.00008551794],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000052976184,0.0000060017524,0.000021927186,0.000024027951,0.00004574603,0.00001468429,0.0000012571678,5.5065982e-8,0.31808582,0.000003246412,0.680508,0.0012839485],"study_design_scores_gemma":[0.00011058161,0.000052326217,0.000077285644,0.000013221096,0.00003415291,0.0000671844,0.0000013921554,0.0000013711345,0.03329325,0.000018947354,0.9660239,0.00030639194],"about_ca_topic_score_codex":0.0000012904952,"about_ca_topic_score_gemma":0.0000032027244,"teacher_disagreement_score":0.2855159,"about_ca_system_score_codex":0.00001929495,"about_ca_system_score_gemma":0.000045961246,"threshold_uncertainty_score":0.99999607},"labels":[],"label_agreement":null},{"id":"W2001576536","doi":"10.1021/bp0255412","title":"Isoprene Formation in <i>Bacillus subtilis</i> : A Barometer of Central Carbon Assimilation in a Bioreactor?","year":2002,"lang":"en","type":"article","venue":"Biotechnology Progress","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Basic Energy Sciences; Atlantic Canada Opportunities Agency; U.S. Department of Energy","keywords":"Acetoin; Isoprene; Catabolism; Biochemistry; Chemistry; Bacillus subtilis; Metabolism; Biosynthesis; Biology; Organic chemistry; Bacteria; Fermentation; Enzyme","score_opus":0.011805318990176138,"score_gpt":0.21382959182929737,"score_spread":0.20202427283912122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001576536","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968711,0.0014720405,0.000038994465,0.0009469137,0.00013998226,0.00032808518,0.000017730323,0.000034822442,0.00015032076],"genre_scores_gemma":[0.9985346,0.0006392099,0.0006469619,0.000029270226,0.000035712,0.000039616927,0.000045125962,0.000016212987,0.000013248566],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986715,0.000048985752,0.00041866643,0.0003610655,0.00009165487,0.0004081547],"domain_scores_gemma":[0.9993737,0.000004803054,0.00016250124,0.00039129058,0.000035063098,0.000032671727],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011037467,0.00018082184,0.0002448548,0.00038329005,0.000015756603,0.00000818568,0.00026278687,0.0011059473,0.000010685246],"category_scores_gemma":[0.000046473746,0.00017748332,0.000053378608,0.00044780716,0.00027370633,0.000006837223,0.00015208266,0.00019485703,0.000001633011],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007313327,0.00020060509,0.017043915,0.000027395052,0.000012444898,0.000009627244,0.000064156484,0.0000050487765,0.9532492,0.00011037004,0.000026998241,0.029177094],"study_design_scores_gemma":[0.0010352009,0.00047478912,0.019364795,0.000032867003,0.0000075307894,0.000027805407,0.000042854084,0.0011570943,0.9750094,0.00007724772,0.0025636056,0.00020680005],"about_ca_topic_score_codex":0.000033242708,"about_ca_topic_score_gemma":0.00029567862,"teacher_disagreement_score":0.028970294,"about_ca_system_score_codex":0.000037504,"about_ca_system_score_gemma":0.000013258031,"threshold_uncertainty_score":0.8530078},"labels":[],"label_agreement":null},{"id":"W2001793440","doi":"10.1046/j.1365-2958.2000.02189.x","title":"Topological analysis and role of the transmembrane domain in polar targeting of PilS, a <i>Pseudomonas aeruginosa</i> sensor kinase","year":2000,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary General Hospital; University of Calgary","funders":"Medical Research Council Canada; University of British Columbia; University of Calgary","keywords":"Transmembrane protein; Biology; Transmembrane domain; Cell biology; Cytoplasm; Pilin; Topology (electrical circuits); Membrane topology; Pilus; Membrane protein; Biophysics; Biochemistry; Membrane; Gene; Escherichia coli; Receptor","score_opus":0.0020183952079972736,"score_gpt":0.18071245094887833,"score_spread":0.17869405574088107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001793440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966067,0.002531414,0.00011187248,0.0003142834,0.000029259982,0.00018445398,0.000103577084,0.0000048437623,0.0001135754],"genre_scores_gemma":[0.99775803,0.0003495976,0.001553478,0.00019050806,0.000016822658,0.0000056639014,0.000090336885,0.000011475417,0.00002408438],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986547,0.00024339934,0.00038787723,0.00038992247,0.000038994505,0.00028510616],"domain_scores_gemma":[0.9994475,0.000011572563,0.00011053029,0.00035881108,0.00003650565,0.000035037378],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019084997,0.00017837589,0.00038750615,0.00009738686,0.0000332944,0.0000042054608,0.000271665,0.0004453486,0.00006294302],"category_scores_gemma":[0.000023268816,0.0001350981,0.00020125476,0.0003591535,0.0004758234,0.0000012995781,0.0001120657,0.00014222643,8.548823e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012874145,0.00008762861,0.0051965723,0.000012753587,0.00015113993,0.0000060708603,0.00004766709,0.000050717932,0.9930911,0.00013564114,0.0000056410363,0.0010863477],"study_design_scores_gemma":[0.00055893994,0.00023144946,0.0029473323,0.0000065976487,0.00008872855,0.000036398385,0.00006109703,0.000007640428,0.9889786,0.00015152575,0.006783808,0.0001478624],"about_ca_topic_score_codex":0.00013037164,"about_ca_topic_score_gemma":0.00011001447,"teacher_disagreement_score":0.006778167,"about_ca_system_score_codex":0.000005775794,"about_ca_system_score_gemma":0.00002759049,"threshold_uncertainty_score":0.5509141},"labels":[],"label_agreement":null},{"id":"W2001808448","doi":"10.1139/w01-009","title":"Transcriptional regulation of the<i>Enterobacter cloacae</i>UW4 1-aminocyclopropane-1-carboxylate (ACC) deaminase gene (<i>acdS</i>)","year":2001,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds De La Recherche Scientifique - FNRS","keywords":"Luciferase; Biology; Molecular biology; Gene expression; Expression vector; Gene; Transcriptional regulation; Promoter; Biochemistry; Transfection; Recombinant DNA","score_opus":0.00674494726538773,"score_gpt":0.18050663621414656,"score_spread":0.17376168894875882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001808448","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996266,0.0012817801,0.00019522767,0.0008607127,0.0010431205,0.00012114027,0.0001223335,0.0000020421003,0.000107650805],"genre_scores_gemma":[0.99809533,0.00026449037,0.00046142025,0.00040609975,0.00032585222,0.0000015797244,0.000079756974,0.00001876568,0.00034672185],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877995,0.00011259505,0.0005102982,0.00020865351,0.00004615326,0.0003423237],"domain_scores_gemma":[0.99893713,0.0000064815135,0.00035060494,0.00030052647,0.00024016146,0.00016507963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019999681,0.00017423429,0.00025257512,0.00013859538,0.00008478374,0.000012615589,0.0004630683,0.00041482545,0.00009882006],"category_scores_gemma":[0.00003678707,0.00013615564,0.0002153409,0.0001284128,0.0003642745,0.0000052725813,0.000038079797,0.00020227018,0.000003848392],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009889766,0.000020723808,0.0071868114,0.000006015745,0.000076962555,0.0000123794,0.000027059192,0.000025416124,0.99056983,0.00006132785,0.0008429113,0.0010716803],"study_design_scores_gemma":[0.00075149606,0.00039013987,0.041320786,0.000024743986,0.000048843147,0.002205889,0.000018373623,0.0000022272898,0.7558467,0.00011696358,0.19911301,0.00016082538],"about_ca_topic_score_codex":0.00025951935,"about_ca_topic_score_gemma":0.0051967385,"teacher_disagreement_score":0.23472312,"about_ca_system_score_codex":0.000043281398,"about_ca_system_score_gemma":0.0004839267,"threshold_uncertainty_score":0.55522656},"labels":[],"label_agreement":null},{"id":"W2001883600","doi":"10.1038/nchembio.221","title":"Chemical genomics in Escherichia coli identifies an inhibitor of bacterial lipoprotein targeting","year":2009,"lang":"en","type":"article","venue":"Nature Chemical Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Purdue University","keywords":"Escherichia coli; Small molecule; Chemical biology; Pseudomonas aeruginosa; Bacteria; Biology; Drug discovery; Function (biology); Genomics; Computational biology; Gene; Genome; Phenotypic screening; Chemistry; Genetics; Microbiology; Biochemistry; Phenotype","score_opus":0.004303538393154085,"score_gpt":0.23316716225676262,"score_spread":0.22886362386360853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001883600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980386,0.0008352673,0.000017930704,0.0003229358,0.0003991488,0.0002144283,0.000046037163,0.000021760201,0.000103897764],"genre_scores_gemma":[0.99442524,0.000119705765,0.00333643,0.0002998146,0.0009810184,0.000010268204,0.0007971015,0.000019147612,0.000011252998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983786,0.0000662327,0.00047664673,0.00059464644,0.00007123339,0.00041269313],"domain_scores_gemma":[0.999276,0.0000127384865,0.00016260726,0.00036093904,0.00009430373,0.00009341529],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002003762,0.0002507342,0.00038998015,0.00006981809,0.000022618999,0.000015408903,0.00044955264,0.0022806402,0.000031066942],"category_scores_gemma":[0.00027668435,0.00023481381,0.00010277701,0.00016356361,0.00024132166,0.000005061515,0.00018736569,0.0005712645,0.0000026409514],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040622745,0.00016003696,0.00009988071,0.0000105024255,0.000016068876,0.0000019158651,0.000019799383,4.9935693e-7,0.995187,0.00022285993,0.00022010911,0.003655107],"study_design_scores_gemma":[0.00069570343,0.00036622313,0.00028067635,0.000009182805,0.000008818539,0.0000055865275,0.000018449822,0.0000086089085,0.9883376,0.0007561243,0.009251277,0.0002617994],"about_ca_topic_score_codex":0.000012996427,"about_ca_topic_score_gemma":0.000011243419,"teacher_disagreement_score":0.009031168,"about_ca_system_score_codex":0.00002879511,"about_ca_system_score_gemma":0.00007402006,"threshold_uncertainty_score":0.9990146},"labels":[],"label_agreement":null},{"id":"W2002697778","doi":"10.1186/2046-1682-5-11","title":"Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase","year":2012,"lang":"en","type":"article","venue":"BMC Biophysics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; College of Engineering, Michigan State University; Michigan State University; U.S. Department of Health and Human Services; National Institutes of Health; National Science Foundation","keywords":"Biophysics; Thermus thermophilus; Polymerase; Processivity; DNA; Active site; RNA; Chemistry; Salt bridge; Biology; Stereochemistry; Biochemistry; Mutant; Enzyme","score_opus":0.004750630969928775,"score_gpt":0.21389394515413848,"score_spread":0.2091433141842097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002697778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965165,0.00072498596,0.0025077148,0.00005250762,0.000041889296,0.00006142852,0.00006703234,0.0000015913366,0.000026299651],"genre_scores_gemma":[0.99937564,0.00006158148,0.00039728443,0.00002787525,0.000025252473,0.0000021582753,0.00009641232,0.0000055073024,0.000008258001],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996147,0.000019175812,0.00012325948,0.00010399129,0.00005616849,0.00008270459],"domain_scores_gemma":[0.9996761,0.0000058426017,0.0000851419,0.0001733417,0.000034457025,0.000025094274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047096073,0.000066093904,0.0001095862,0.00003428466,0.000020992911,0.0000033275178,0.000065003,0.00009418017,5.823754e-7],"category_scores_gemma":[0.000008967304,0.000052916457,0.00005891068,0.00019173614,0.00016533448,0.0000023145183,0.000048301616,0.000026914031,8.1682856e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013883073,0.00004264786,0.0045279656,0.000017939617,0.00013556832,2.9570959e-8,0.000043229513,0.00006774173,0.9901742,0.0015310944,5.857237e-7,0.0034451366],"study_design_scores_gemma":[0.00014901263,0.00003856075,0.047417052,0.0000032269566,0.00025147622,0.0000013196211,0.00003499263,0.0026781068,0.9492539,0.000096914235,0.00001059636,0.00006480269],"about_ca_topic_score_codex":0.000027266651,"about_ca_topic_score_gemma":0.000023704008,"teacher_disagreement_score":0.04288909,"about_ca_system_score_codex":0.0000038495386,"about_ca_system_score_gemma":0.000030966192,"threshold_uncertainty_score":0.21578705},"labels":[],"label_agreement":null},{"id":"W2002854054","doi":"10.2166/wh.2013.201","title":"Eliminating false positives in a qPCR assay for the detection of the uidA gene in Escherichia coli","year":2013,"lang":"en","type":"article","venue":"Journal of Water and Health","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Escherichia coli; Polymerase chain reaction; Molecular biology; Biology; False positive paradox; genomic DNA; Taq polymerase; Recombinant DNA; Gene; Real-time polymerase chain reaction; Genetics; Thermus aquaticus","score_opus":0.012167257956677226,"score_gpt":0.25930956575813596,"score_spread":0.24714230780145874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002854054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940917,0.0009198099,0.00047049977,0.004218017,0.00010354838,0.00019023247,0.00000198638,3.9310362e-7,0.000003850867],"genre_scores_gemma":[0.99863297,0.0006350338,0.00037103135,0.00025725996,0.00007919207,0.000005866546,9.3448085e-7,0.000004238826,0.000013484029],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946547,0.00005782876,0.0002562806,0.00006108737,0.000038163183,0.00012118486],"domain_scores_gemma":[0.99971634,0.000010504908,0.00013065521,0.000065644555,0.000057269644,0.000019566178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053152593,0.00004864041,0.00010908346,0.000031326425,0.00004193508,0.000009956151,0.000082059254,0.00007786748,0.0000010549201],"category_scores_gemma":[0.000019894731,0.000023168095,0.000035356432,0.000035712466,0.000036825128,0.0000026475836,0.00004173477,0.00009499757,6.440706e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038765727,0.000021583512,0.0016302696,0.000016674872,0.000008524606,1.1797158e-7,0.00016400842,0.000007968404,0.9868562,0.0000045851434,0.000012257395,0.0112390295],"study_design_scores_gemma":[0.00044733638,0.0005403354,0.11746544,0.000022215605,0.000004246863,0.000013452874,0.00017797404,0.00009712293,0.880345,0.00015877119,0.00069465034,0.000033477907],"about_ca_topic_score_codex":0.0001625984,"about_ca_topic_score_gemma":0.00029558153,"teacher_disagreement_score":0.11583517,"about_ca_system_score_codex":0.000011091977,"about_ca_system_score_gemma":0.000037462738,"threshold_uncertainty_score":0.09447675},"labels":[],"label_agreement":null},{"id":"W2003390978","doi":"10.1371/journal.pgen.1000619","title":"Alternative Mechanisms for Tn5 Transposition","year":2009,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Transposable element; Biology; Transposition (logic); Mechanism (biology); Genetics; DNA Transposable Elements; Computational biology; Genome; Gene; Computer science; Physics","score_opus":0.012470673650695617,"score_gpt":0.23492245079162566,"score_spread":0.22245177714093003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003390978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94603693,0.0005167762,0.05122864,0.00095702894,0.0002578976,0.00053489394,0.00012676371,0.00003314258,0.00030791998],"genre_scores_gemma":[0.9839832,0.00030955745,0.014154048,0.0008222352,0.00036123977,0.000028742517,0.00020918305,0.00002065539,0.000111149515],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991662,0.000017725968,0.00016680357,0.00031594423,0.00008526626,0.00024807322],"domain_scores_gemma":[0.99952435,0.000004318314,0.000056956113,0.00026027203,0.000094771145,0.00005931697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000050865394,0.00015062018,0.00012550247,0.000037597692,0.00006549553,0.000020057103,0.00020414933,0.00025677506,0.000010003298],"category_scores_gemma":[0.00001321699,0.0001496921,0.00008556403,0.00005094944,0.00003629901,0.0000012012238,0.000022782255,0.000054943604,0.000005714101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008358204,0.000099592915,0.000008736072,0.0000062977974,0.000036101505,7.4917097e-7,0.000016905313,0.00004983457,0.9919181,0.0017937353,0.00015244643,0.0058339164],"study_design_scores_gemma":[0.00052777684,0.0017788219,0.00011866325,0.000006613975,0.00003955842,0.0000055358205,0.000008863804,0.0008558418,0.9759955,0.013185361,0.007281619,0.00019586382],"about_ca_topic_score_codex":5.166143e-7,"about_ca_topic_score_gemma":0.000004751632,"teacher_disagreement_score":0.03794625,"about_ca_system_score_codex":0.00000833859,"about_ca_system_score_gemma":0.000024984816,"threshold_uncertainty_score":0.61042666},"labels":[],"label_agreement":null},{"id":"W2003550923","doi":"10.1073/pnas.1007805107","title":"A small RNA promotes siderophore production through transcriptional and metabolic remodeling","year":2010,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Université de Sherbrooke","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Enterobactin; Siderophore; Biology; Repressor; Serine; Nonribosomal peptide; Biosynthesis; Biochemistry; Gene expression; Gene; Enzyme","score_opus":0.03810317278605748,"score_gpt":0.2704590194846959,"score_spread":0.23235584669863843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003550923","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99580616,0.00034343253,0.0000028770119,0.0033375504,0.000048433274,0.00012262122,0.0000071063514,0.0000039190113,0.0003279046],"genre_scores_gemma":[0.99106985,0.00025538725,0.00833449,0.00009618467,0.00018640757,0.000005259496,3.6338858e-7,0.0000033864085,0.00004865646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992623,0.000003016054,0.00017217244,0.00024036574,0.00022648288,0.00009568464],"domain_scores_gemma":[0.99963564,0.0000044706085,0.000151898,0.000009298963,0.00018372595,0.0000149599555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042499913,0.000070745955,0.00008551156,0.0000417537,0.00011212369,0.000013256888,0.00027969605,0.00015502684,0.0000023215696],"category_scores_gemma":[0.0001945995,0.00004807402,0.00003970373,0.00017465295,0.00067850185,0.000013139779,0.00006525445,0.0001296265,1.0733073e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012086156,0.000018268483,0.0003454866,0.000015234862,0.000008232361,5.681736e-10,0.00004345735,0.000007569277,0.98950064,0.0092891585,0.000027181419,0.000732679],"study_design_scores_gemma":[0.00008134709,0.00004171551,0.008403274,0.000011203342,0.000009101152,0.000017879187,0.000030062354,0.00010310288,0.96795624,0.022003338,0.001286161,0.000056555815],"about_ca_topic_score_codex":0.000003545772,"about_ca_topic_score_gemma":5.805243e-7,"teacher_disagreement_score":0.021544386,"about_ca_system_score_codex":0.0000015362438,"about_ca_system_score_gemma":0.00002215172,"threshold_uncertainty_score":0.24999683},"labels":[],"label_agreement":null},{"id":"W2003724384","doi":"10.1016/s0010-9452(08)70642-7","title":"Six Proposals for Freeing Online Access to the Refereed Literature and How the Cortex Initiative can Help","year":2002,"lang":"en","type":"article","venue":"Cortex","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Messenger RNA; Bacteria; Translation (biology); Computational biology; Gene; RNA; Psychology; Mechanism (biology); Key (lock); Gene expression; Biology; Genetics; Epistemology; Philosophy; Ecology","score_opus":0.03200461340641452,"score_gpt":0.2670553606529429,"score_spread":0.23505074724652836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003724384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94984466,0.0019075697,0.0002611551,0.046093535,0.0003043264,0.00095193484,0.0004712131,0.00001809467,0.0001475223],"genre_scores_gemma":[0.99362254,0.0007120956,0.0002952553,0.0037602647,0.0005653865,0.00006977857,0.00018689007,0.000021309488,0.00076646556],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991796,0.000045055094,0.000116097355,0.00034771592,0.00006949337,0.00024203635],"domain_scores_gemma":[0.999289,0.000023558008,0.00007507542,0.00040954532,0.0001449179,0.00005793165],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009780147,0.00016259731,0.00013644935,0.000028096349,0.00018213566,0.0001857932,0.00043160163,0.00022962768,0.000009290925],"category_scores_gemma":[0.00013557202,0.00009158383,0.00004990241,0.00013978328,0.000112688205,0.0000039138254,0.0002843778,0.00014204945,0.000001278548],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000067330766,0.000047398324,0.00020521034,0.000020710291,0.00007098083,0.0000030200474,0.00025506626,9.111595e-7,0.94498295,0.00018182881,0.023913557,0.030251011],"study_design_scores_gemma":[0.0009910722,0.0014197142,0.031500757,0.000068385554,0.00007920442,0.000058831356,0.0003387835,0.00033608088,0.21449436,0.00040941036,0.749816,0.00048739748],"about_ca_topic_score_codex":0.0000064669557,"about_ca_topic_score_gemma":0.00056650786,"teacher_disagreement_score":0.7304886,"about_ca_system_score_codex":0.000007115207,"about_ca_system_score_gemma":0.000022652495,"threshold_uncertainty_score":0.37346804},"labels":[],"label_agreement":null},{"id":"W2003808203","doi":"10.1016/j.jmb.2006.11.010","title":"Bacillus subtilis RNA Polymerase Recruits the Transcription Factor Spo0A∼P to Stabilize a Closed Complex during Transcription Initiation","year":2006,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Molecular biology; RNA polymerase; Transcription factor II D; RNA polymerase II; Polymerase; Transcription (linguistics); Biology; General transcription factor; RNA polymerase I; RNA polymerase II holoenzyme; Transcription factor II F; Abortive initiation; RNA-dependent RNA polymerase; Sigma factor; RNA; Promoter; DNA; Biochemistry; Gene expression; Gene","score_opus":0.018918348885290533,"score_gpt":0.25598167377549735,"score_spread":0.23706332489020682,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003808203","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887133,0.0009836105,0.0071266154,0.002202776,0.00046844955,0.00031876258,0.00008227736,0.000011663484,0.00009250706],"genre_scores_gemma":[0.9978456,0.00021094184,0.0008829306,0.00043612436,0.00043691482,0.000010319378,0.000108179695,0.000027916518,0.000041060648],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982821,0.000271163,0.00064146204,0.0003044075,0.00015149027,0.0003494029],"domain_scores_gemma":[0.99904144,0.000011796284,0.0003109508,0.00030836888,0.0002336058,0.00009386225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025996566,0.0002383039,0.00029875926,0.0001659696,0.00011137395,0.000035059362,0.00034635686,0.0004107314,0.00005536017],"category_scores_gemma":[0.000065971995,0.00018052671,0.00025670585,0.00019340994,0.00013016211,0.000007858416,0.00004523865,0.00022839062,0.0000044954677],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052230415,0.000084196145,0.00014434959,0.000011479681,0.00006071801,0.00001339748,0.000052974217,0.000055756194,0.99533224,0.00014419599,0.00008114586,0.0034972203],"study_design_scores_gemma":[0.0012864978,0.0011137051,0.011332487,0.00001273745,0.00004698444,0.00014571733,0.000046761033,0.000008049693,0.97017723,0.00028191443,0.015335195,0.0002126941],"about_ca_topic_score_codex":0.000043011514,"about_ca_topic_score_gemma":0.000097728655,"teacher_disagreement_score":0.025155006,"about_ca_system_score_codex":0.000042662956,"about_ca_system_score_gemma":0.00007915269,"threshold_uncertainty_score":0.73616654},"labels":[],"label_agreement":null},{"id":"W2004805008","doi":"10.1016/j.jmb.2009.08.036","title":"Ligand-Induced Conformational Rearrangements Promote Interaction between the Escherichia coli Enterobactin Biosynthetic Proteins EntE and EntB","year":2009,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"","keywords":"Enterobactin; Chemistry; Escherichia coli; Ligand (biochemistry); Nitrilotriacetic acid; Stereochemistry; Biochemistry; Chelation; Receptor; Gene","score_opus":0.010800005623953644,"score_gpt":0.26412281050060904,"score_spread":0.25332280487665537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004805008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939111,0.0003092444,0.0020201413,0.00317672,0.00021269638,0.00026263794,0.000008337933,0.000005191645,0.000093960254],"genre_scores_gemma":[0.99805295,0.00019849902,0.0008786802,0.00058844103,0.00022582705,0.0000039129395,0.000028243106,0.00000971969,0.000013737247],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989495,0.00013243155,0.00042580205,0.00017898464,0.00010057113,0.00021271089],"domain_scores_gemma":[0.9991736,0.000009755226,0.00043194895,0.00017445689,0.00014090035,0.000069331705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003399587,0.00016407696,0.00021660264,0.000084680265,0.00007478391,0.00003728146,0.00023617386,0.00027511612,0.0000069353023],"category_scores_gemma":[0.00009050242,0.000113667,0.0001043749,0.000075202544,0.00008859041,0.00000770334,0.00008092167,0.00025015813,0.0000027842455],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013279803,0.00004869288,0.00044327087,0.000004297833,0.00011761835,0.0000035431467,0.000025502666,9.619474e-7,0.98661894,0.000084167215,0.000060527298,0.012459668],"study_design_scores_gemma":[0.0007085277,0.002354798,0.005566009,0.000026333619,0.000050906354,0.00011766047,0.00003324189,0.000008767454,0.9716639,0.00037543388,0.018965077,0.00012937398],"about_ca_topic_score_codex":0.0000038869803,"about_ca_topic_score_gemma":0.0000019415556,"teacher_disagreement_score":0.01890455,"about_ca_system_score_codex":0.000015530208,"about_ca_system_score_gemma":0.000054132164,"threshold_uncertainty_score":0.4635206},"labels":[],"label_agreement":null},{"id":"W2004845857","doi":"10.1021/bi7005288","title":"The TatA Subunit of<i>Escherichia coli</i>Twin-Arginine Translocase Has an N-in Topology","year":2007,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"University of East Anglia; University of Calgary","keywords":"Translocase; Protein subunit; Escherichia coli; Topology (electrical circuits); Chemistry; Physics; Genetics; Biology; Combinatorics; Mathematics; Gene","score_opus":0.0118307432889976,"score_gpt":0.2463779972054079,"score_spread":0.2345472539164103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004845857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968827,0.0012793477,0.00025104894,0.000526417,0.00021414785,0.00013513907,0.000036722824,0.000014648977,0.00065983424],"genre_scores_gemma":[0.9981375,0.00028583893,0.0006876337,0.00014583772,0.0002677135,0.000009105293,0.00013535938,0.00002321476,0.00030784545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99865633,0.000037868416,0.00038821955,0.00038715807,0.0000985485,0.00043184965],"domain_scores_gemma":[0.99900645,0.00002489765,0.00011417323,0.00067338644,0.000075908734,0.00010515556],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047126185,0.00019621389,0.00019118353,0.000033059623,0.00010026392,0.00002119055,0.00048706165,0.0005184665,0.000025466721],"category_scores_gemma":[0.000073106305,0.00016417031,0.000078831414,0.00017812317,0.0005731017,0.000002197292,0.00010008329,0.00018564056,0.000002576074],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030154135,0.00011160521,0.00074198865,0.000017804323,0.0000242817,0.000013301587,0.00002060545,0.0000023081213,0.9949096,0.00008679723,0.00029615144,0.003474043],"study_design_scores_gemma":[0.00059362006,0.0002958568,0.0015487615,0.000007013911,0.000011825384,0.000026675045,0.00017751774,0.000013039152,0.9520174,0.000052671323,0.045063823,0.00019176285],"about_ca_topic_score_codex":0.00006551326,"about_ca_topic_score_gemma":0.00028978143,"teacher_disagreement_score":0.044767674,"about_ca_system_score_codex":0.0000128485235,"about_ca_system_score_gemma":0.00014058201,"threshold_uncertainty_score":0.6694671},"labels":[],"label_agreement":null},{"id":"W2005034781","doi":"10.1139/o10-141","title":"TonB or not TonB: is that the question?This paper is one of a selection of papers published in a Special Issue entitled CSBMCB 53rd Annual Meeting — Membrane Proteins in Health and Disease, and has undergone the Journal’s usual peer review process.","year":2011,"lang":"en","type":"review","venue":"Biochemistry and Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research","keywords":"Periplasmic space; Bacterial outer membrane; Siderophore; Biochemistry; Heme; Biology; Membrane transport protein; Inner membrane; Membrane protein; Colicin; Ferrichrome; Transport protein; Bacteria; Cytoplasm; Biophysics; Cell biology; Membrane; Escherichia coli; Gene","score_opus":0.0257606314991067,"score_gpt":0.2895190207715376,"score_spread":0.26375838927243095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005034781","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011266623,0.9811704,0.000001046889,0.00614052,0.00011574027,0.00085945666,0.00020768425,0.000004179783,0.0002343065],"genre_scores_gemma":[0.008024534,0.9888288,0.00006224647,0.0006097426,0.0004527611,0.000055327375,0.00019141854,0.000021705178,0.0017535099],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978066,0.0003669046,0.0008112456,0.0005344815,0.00017689327,0.0003038677],"domain_scores_gemma":[0.9983698,0.000051871928,0.0008008004,0.00030865078,0.00033695795,0.00013188092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015615697,0.00035190058,0.00096578366,0.00006998521,0.000105855026,0.000028809913,0.0002988222,0.00072149985,0.00068235426],"category_scores_gemma":[0.0007792043,0.00020693456,0.00010813755,0.00023267655,0.000583312,0.0000090770845,0.000211458,0.00045096193,4.2509652e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003047644,0.0010335371,0.00043313202,0.16315715,0.001225812,0.000011733402,0.0021539126,3.0697316e-7,0.40923244,0.000104307386,0.032367576,0.38723245],"study_design_scores_gemma":[0.00048572398,0.0004899248,0.0000150014375,0.0045120013,0.00021987378,0.00008127048,0.00021469327,7.2673845e-7,0.10115768,0.000044906294,0.8925038,0.00027438335],"about_ca_topic_score_codex":0.0001027117,"about_ca_topic_score_gemma":0.00009789368,"teacher_disagreement_score":0.8601363,"about_ca_system_score_codex":0.000027062217,"about_ca_system_score_gemma":0.00079027464,"threshold_uncertainty_score":0.84385467},"labels":[],"label_agreement":null},{"id":"W2005967422","doi":"10.1021/bi401349d","title":"Crystal and Solution Structure Analysis of FhuD2 from <i>Staphylococcus aureus</i> in Multiple Unliganded Conformations and Bound to Ferrioxamine-B","year":2014,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; U.S. Department of Energy","keywords":"Siderophore; Chemistry; Small-angle X-ray scattering; Ligand (biochemistry); Crystallography; Stereochemistry; Crystal structure; Hydrogen bond; Bacillus cereus; Receptor; Molecule; Biochemistry; Biology; Bacteria; Scattering; Organic chemistry","score_opus":0.005207518373739099,"score_gpt":0.20695439484403474,"score_spread":0.20174687647029566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005967422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99873066,0.00024163844,0.00034366807,0.00012536843,0.000042169824,0.000095153955,0.00036707183,0.0000065227,0.000047723533],"genre_scores_gemma":[0.9985909,0.000052321648,0.00054992567,0.00009377071,0.000074818185,0.000005134568,0.00060196646,0.000007242108,0.000023921606],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925613,0.000015454996,0.00022275414,0.00028989936,0.000062707484,0.00015307534],"domain_scores_gemma":[0.9995154,0.00001322923,0.000082457474,0.00026743987,0.000046743968,0.00007469921],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006334524,0.00013319119,0.00020910405,0.00008537903,0.000040603358,0.00002213668,0.00010298191,0.0003153147,0.000009219911],"category_scores_gemma":[0.000088919296,0.00013187122,0.000039261176,0.00018923746,0.00011860195,0.0000026152602,0.00014000514,0.00006692537,1.6502081e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046033536,0.000017361166,0.0092929965,0.000016247848,0.00009889628,1.8670114e-7,0.000038275448,0.000019530973,0.98973554,0.000008489242,0.000085544634,0.0006408884],"study_design_scores_gemma":[0.0005035773,0.000074450654,0.040498953,0.000008895276,0.00008504633,9.995972e-7,0.000057343295,0.0007980565,0.95625013,0.000042405747,0.0015249144,0.00015524565],"about_ca_topic_score_codex":0.00015525435,"about_ca_topic_score_gemma":0.0006558075,"teacher_disagreement_score":0.033485435,"about_ca_system_score_codex":0.0000084208095,"about_ca_system_score_gemma":0.000024599873,"threshold_uncertainty_score":0.5377552},"labels":[],"label_agreement":null},{"id":"W2006211127","doi":"10.1016/s0005-2736(02)00578-3","title":"TonB-dependent receptors—structural perspectives","year":2002,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":172,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Human Frontier Science Program; Canadian Institutes of Health Research; Welch Foundation","keywords":"Periplasmic space; Bacterial outer membrane; Siderophore; Biology; Antiparallel (mathematics); Chemiosmosis; Biophysics; Cytoplasm; Bacteria; Cell biology; Biochemistry; ATP synthase; Escherichia coli; Enzyme; Genetics","score_opus":0.02256458580877343,"score_gpt":0.2904079944170467,"score_spread":0.26784340860827327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006211127","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.059943274,0.9348607,0.0000024208484,0.00081330625,0.0017040041,0.001137694,0.0008020616,0.00017178414,0.0005647313],"genre_scores_gemma":[0.016986469,0.9747337,0.00028379555,0.00010892144,0.0020183905,0.00012221395,0.002208836,0.0002451758,0.0032924984],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99511546,0.00035122575,0.0010096355,0.0020417185,0.0005081492,0.00097383396],"domain_scores_gemma":[0.9969871,0.00004407046,0.0007974277,0.0016591155,0.00024022485,0.00027203182],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.00023435391,0.0014473925,0.0019759745,0.00044420775,0.00025338627,0.00025847263,0.0016107576,0.0021697928,0.00020194906],"category_scores_gemma":[0.00010455575,0.0011838373,0.0012620997,0.00066036306,0.00071333256,0.000014313248,0.00086089637,0.0007046465,0.00020771744],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009709199,0.0003257433,1.2176686e-7,0.003011377,0.0013393676,0.000016245644,0.00019999247,2.4549206e-7,0.813477,0.00016178717,0.0053739143,0.17599712],"study_design_scores_gemma":[0.00039118654,0.00053903705,0.0000044833996,0.0006095443,0.0005447037,0.0001373353,0.00008900616,0.0000024423857,0.18241008,0.000027552993,0.81382686,0.0014177511],"about_ca_topic_score_codex":0.000030085526,"about_ca_topic_score_gemma":0.000011332783,"teacher_disagreement_score":0.80845296,"about_ca_system_score_codex":0.00009593591,"about_ca_system_score_gemma":0.0002664839,"threshold_uncertainty_score":0.99982756},"labels":[],"label_agreement":null},{"id":"W2006832626","doi":"10.1006/jmbi.2000.4500","title":"Analysis of a cell-cycle promoter bound by a response regulator","year":2000,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Caulobacter crescentus; Cell cycle; Biology; Promoter; Transcription (linguistics); Transcription factor; Response element; Cell division; Response regulator; Cell biology; Genetics; DNA replication; Molecular biology; DNA; Cell; Gene; Gene expression; Mutant","score_opus":0.0031631694392693335,"score_gpt":0.23316496006045723,"score_spread":0.2300017906211879,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006832626","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969046,0.0014655669,0.0008956142,0.00039391918,0.000083334846,0.000081915525,0.00005356752,0.0000032656246,0.00011819395],"genre_scores_gemma":[0.9975045,0.00032201986,0.0015579493,0.00022525383,0.000056586567,0.0000020865812,0.00004475517,0.000017091323,0.0002698021],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985854,0.0002668916,0.0005527763,0.00024787948,0.000103137085,0.00024388998],"domain_scores_gemma":[0.99898785,0.000014665171,0.00036853645,0.00038419073,0.00015527928,0.00008949907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004646758,0.00016372005,0.00043410537,0.0002295237,0.000028998773,0.000011460855,0.00034829587,0.00044501657,0.00019466104],"category_scores_gemma":[0.000064471904,0.00013743142,0.00036392125,0.00033591178,0.0002027129,0.0000024216502,0.0000644716,0.00013661393,0.0000028645877],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001357065,0.00014297297,0.00042795943,0.0000047860426,0.0007328425,0.00001278613,0.00001641582,0.000036578076,0.99415,0.000011049327,0.00035856973,0.0027490018],"study_design_scores_gemma":[0.0006885402,0.0019507103,0.0017186316,0.000005274818,0.0003743551,0.0000547042,0.000009147017,0.000021988239,0.9630618,0.00014696538,0.031816926,0.0001509597],"about_ca_topic_score_codex":0.000007866448,"about_ca_topic_score_gemma":0.000003809734,"teacher_disagreement_score":0.031458355,"about_ca_system_score_codex":0.000012630053,"about_ca_system_score_gemma":0.00010095313,"threshold_uncertainty_score":0.56042904},"labels":[],"label_agreement":null},{"id":"W2006843948","doi":"10.1093/emboj/20.7.1508","title":"Cpx signaling pathway monitors biogenesis and affects assembly and expression of P pili","year":2001,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":188,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Biology; Pilus; Biogenesis; Cell biology; Signal transduction; Expression (computer science); Genetics; Gene; Escherichia coli","score_opus":0.009481964766112773,"score_gpt":0.2262583430853351,"score_spread":0.21677637831922233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006843948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963686,0.002942961,0.00017342233,0.00024571244,0.00014380255,0.000058198722,0.000004055536,0.0000036090576,0.00005965636],"genre_scores_gemma":[0.9966245,0.0026159468,0.00037502366,0.000037121452,0.0002875801,0.0000013775657,0.0000023067237,0.000010354482,0.000045789326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999446,0.00007023273,0.00013432246,0.00012884023,0.00007166821,0.0001489648],"domain_scores_gemma":[0.99963766,0.000014340447,0.00011276346,0.00013729095,0.000039015482,0.00005893306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024954567,0.00009781591,0.00011363696,0.0000371188,0.00012953853,0.000029164723,0.00012075379,0.00012738057,0.000006549141],"category_scores_gemma":[0.000028604049,0.000062384235,0.000037382037,0.00005002753,0.00010547898,0.0000025738138,0.000116235984,0.0000955531,3.703604e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000062973384,0.000015928996,0.0027695154,0.0000053481967,0.000018209541,0.0000047378944,0.00002607835,0.0000049414352,0.9882347,0.0000085081565,0.00007839818,0.008770677],"study_design_scores_gemma":[0.00027963135,0.0003196338,0.0033447468,0.000025346655,0.000015753169,0.0003558214,0.000093803064,0.000009316484,0.9922152,0.00013352183,0.0031247311,0.00008249703],"about_ca_topic_score_codex":0.000004500757,"about_ca_topic_score_gemma":0.0000026271282,"teacher_disagreement_score":0.00868818,"about_ca_system_score_codex":0.000002776059,"about_ca_system_score_gemma":0.00002195144,"threshold_uncertainty_score":0.2543955},"labels":[],"label_agreement":null},{"id":"W2007194419","doi":"10.1038/nsmb.1603","title":"A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system","year":2009,"lang":"en","type":"article","venue":"Nature Structural & Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":189,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Periplasmic space; Inner membrane; Bacterial outer membrane; Cell biology; Secretion; Biology; Membrane transport protein; Translocon; Membrane; Membrane protein; Biophysics; Biochemistry","score_opus":0.003067707678493138,"score_gpt":0.23780231941294339,"score_spread":0.23473461173445026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007194419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962605,0.0011465775,0.000060557348,0.0014504006,0.00056602387,0.00038269194,0.000026176513,0.000013940276,0.00009307885],"genre_scores_gemma":[0.99872065,0.000030828338,0.0002373212,0.0006547756,0.0001089265,0.0000054512384,0.00022611574,0.0000093280305,0.0000066296093],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99873966,0.00022842085,0.00033007062,0.00030412967,0.00011726969,0.00028046305],"domain_scores_gemma":[0.99918324,0.000009839994,0.00021694363,0.0004391165,0.00012461081,0.000026264617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016286242,0.00021600076,0.00022554508,0.00006168931,0.00009116782,0.000018357294,0.00058033655,0.0008713683,0.000004772933],"category_scores_gemma":[0.000095679796,0.00012287054,0.000117472446,0.0002586463,0.00019323398,0.0000049561277,0.00010590923,0.00043568734,6.5466537e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011176292,0.0000033850613,0.0005949507,0.000015898404,0.000015748717,0.00000199299,0.00007818397,0.000015623616,0.99189913,0.006558612,0.00003115468,0.0006735261],"study_design_scores_gemma":[0.0010998953,0.000820827,0.056946483,0.000034114997,0.000042288513,0.00029442346,0.00028017155,0.00093152747,0.9356958,0.0024744975,0.0010827179,0.00029722403],"about_ca_topic_score_codex":0.000037631657,"about_ca_topic_score_gemma":0.00006602362,"teacher_disagreement_score":0.05635153,"about_ca_system_score_codex":0.000025676925,"about_ca_system_score_gemma":0.00004723457,"threshold_uncertainty_score":0.672079},"labels":[],"label_agreement":null},{"id":"W2007632362","doi":"10.2174/187152607780090685","title":"Targeting Bacterial Secretion Systems: Benefits of Disarmament in the Microcosm","year":2007,"lang":"en","type":"review","venue":"Infectious Disorders - Drug Targets","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Secretion; Virulence; Lytic cycle; Biology; Microbiology; Type three secretion system; Pathogen; Bacteria; Virulence factor; Antibiotics; Computational biology; Biochemistry; Virology; Genetics; Virus; Gene","score_opus":0.01290411838370911,"score_gpt":0.2701158656284315,"score_spread":0.2572117472447224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007632362","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.015255899,0.9813489,0.00010854529,0.0000318114,0.0013284738,0.0015138692,0.00013595415,0.000023182743,0.0002533664],"genre_scores_gemma":[0.023515576,0.97429603,0.000036214937,0.00003711751,0.0005680997,0.0001685749,0.001282441,0.000067695466,0.00002823701],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99740916,0.0003324737,0.0009548615,0.00060300017,0.0001922945,0.00050822954],"domain_scores_gemma":[0.99869347,0.000051337538,0.0006192118,0.00051986286,0.00006864911,0.000047444482],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00074262003,0.00052332645,0.00094806444,0.00023771501,0.00009677202,0.000051717583,0.00053640676,0.0008569839,0.000013809327],"category_scores_gemma":[0.00007325898,0.0003941546,0.00036401532,0.00032874043,0.00015318346,0.000004270597,0.00022261265,0.00039606384,0.0000098765895],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010675098,0.0010734922,0.00034233785,0.009610242,0.0006445922,0.00000765238,0.0004592015,0.00024720427,0.012801541,0.00030004166,0.0042762714,0.9701307],"study_design_scores_gemma":[0.00040857497,0.00021180313,0.00002437469,0.0008134146,0.00014370319,0.000027999098,0.000081945414,0.0000032635744,0.0005416171,0.000022183478,0.9972724,0.00044875953],"about_ca_topic_score_codex":0.0003103272,"about_ca_topic_score_gemma":0.00041347404,"teacher_disagreement_score":0.9929961,"about_ca_system_score_codex":0.00006228379,"about_ca_system_score_gemma":0.0001344701,"threshold_uncertainty_score":0.99985105},"labels":[],"label_agreement":null},{"id":"W2008085142","doi":"10.1021/bi6023786","title":"Structural and Functional Analysis of ProQ:  An Osmoregulatory Protein of <i>Escherichia coli</i>","year":2007,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Allergy and Infectious Diseases; University of Colorado Denver","keywords":"Circular dichroism; Escherichia coli; Chemistry; C-terminus; Biochemistry; Thermostability; Linker; Stereochemistry; Biophysics; Amino acid; Crystallography; Biology; Enzyme","score_opus":0.00686460839048696,"score_gpt":0.21766520072841797,"score_spread":0.210800592337931,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008085142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991854,0.0003436139,0.00013911707,0.000018445646,0.00003788912,0.000103332044,0.000057673366,0.000007144716,0.000107429936],"genre_scores_gemma":[0.9982511,0.000010002308,0.0012788523,0.0000236336,0.00009077321,0.000004019317,0.00021729496,0.000009996813,0.0001143698],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991603,0.00001218267,0.00026960124,0.00029228616,0.000107188425,0.00015846855],"domain_scores_gemma":[0.999323,0.0000035056237,0.00016371069,0.0003266031,0.00011191671,0.0000712808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016178815,0.00012753205,0.00020462347,0.000061320236,0.000027273834,0.0000051134007,0.00011420428,0.0003210493,0.000020820253],"category_scores_gemma":[0.000024452806,0.00012134793,0.00008359228,0.00022970156,0.0002684518,0.0000019744684,0.00008413536,0.00006210486,1.0281378e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017515765,0.00003969002,0.0048228325,0.000042239124,0.00024330508,4.988111e-7,0.00000782096,0.0000058770474,0.9937702,0.00005863282,0.00002115766,0.0008126327],"study_design_scores_gemma":[0.0002357169,0.0001605984,0.06714618,0.0000050228286,0.00011754855,0.0000026104792,0.000039813614,0.000049725648,0.9318379,0.000020760286,0.0002605881,0.00012349596],"about_ca_topic_score_codex":0.0000142861845,"about_ca_topic_score_gemma":0.000015852882,"teacher_disagreement_score":0.062323354,"about_ca_system_score_codex":0.000006376229,"about_ca_system_score_gemma":0.000060512353,"threshold_uncertainty_score":0.4948425},"labels":[],"label_agreement":null},{"id":"W2008509434","doi":"10.1128/jb.184.10.2709-2718.2002","title":"<i>Caulobacter crescentus</i> Synthesizes an S-Layer-Editing Metalloprotease Possessing a Domain Sharing Sequence Similarity with Its Paracrystalline S-Layer Protein","year":2002,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Caulobacter crescentus; Biology; S-layer; Paracrystalline; Structural similarity; Peptide sequence; Sequence (biology); Metalloproteinase; Domain (mathematical analysis); Layer (electronics); Genetics; Sequence alignment; Similarity (geometry); Bacterial protein; Computational biology; Biochemistry; Bacteria; Gene; Matrix metalloproteinase; Crystallography","score_opus":0.03318486716219826,"score_gpt":0.2607233651685794,"score_spread":0.22753849800638115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008509434","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968028,0.00055682514,0.00094056985,0.0010216681,0.00021834513,0.00032382927,0.00003513745,0.000021616643,0.000079186975],"genre_scores_gemma":[0.986449,0.00021662556,0.011877079,0.00036282765,0.0009179502,0.000016770275,0.000028277816,0.00005309293,0.000078362136],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99755144,0.000253495,0.0008093004,0.0005751921,0.0002112407,0.00059932127],"domain_scores_gemma":[0.9979833,0.000018064904,0.00086505275,0.00051312806,0.00036713804,0.0002533668],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00063502806,0.00039341795,0.0006038965,0.00014075807,0.00017090405,0.00012363921,0.0006424691,0.0005497577,0.00017485708],"category_scores_gemma":[0.0001896839,0.00030520235,0.0001721261,0.00015046635,0.0002505285,0.000052848096,0.00022693332,0.0005310731,0.0000058131977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037825026,0.00022262736,0.0014376988,0.000041786512,0.00016365435,0.00018894776,0.000049226044,0.000029947334,0.99564946,0.00004436105,0.000027237227,0.0017667853],"study_design_scores_gemma":[0.0018821751,0.003982396,0.0024548734,0.00024393715,0.00012952648,0.002683444,0.00017367258,0.00030808087,0.970508,0.00024809036,0.016700367,0.00068547105],"about_ca_topic_score_codex":0.000012821931,"about_ca_topic_score_gemma":0.000044165827,"teacher_disagreement_score":0.025141511,"about_ca_system_score_codex":0.00004461772,"about_ca_system_score_gemma":0.00008819816,"threshold_uncertainty_score":0.99994004},"labels":[],"label_agreement":null},{"id":"W2008523848","doi":"10.1016/j.mib.2010.10.009","title":"Structural overview of the bacterial injectisome","year":2010,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Biology; Bacterial protein; Cytoplasm; Virulence; Microbiology; Bacteria; Computational biology; Cell biology; Biochemistry; Genetics; Gene","score_opus":0.061479891832579,"score_gpt":0.35300414208952835,"score_spread":0.29152425025694934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008523848","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0072036143,0.9696017,0.0000010371949,0.000020626108,0.022089986,0.0005906033,0.0004779584,0.0000058821265,0.000008573938],"genre_scores_gemma":[0.00019038378,0.9971821,0.000042746375,0.000006936574,0.0011034493,0.00003777231,0.0013846285,0.00003373362,0.000018265138],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980362,0.0002918507,0.00074710336,0.0005522649,0.000037372953,0.0003352149],"domain_scores_gemma":[0.99860203,0.000018424822,0.0005454536,0.00075138087,0.000050295886,0.000032440625],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00015609799,0.0003964322,0.0009838777,0.00012288215,0.00004148335,0.000011364534,0.00089660526,0.0014603297,0.000056177872],"category_scores_gemma":[0.00007165704,0.0002614077,0.00044242464,0.00022675988,0.00037241983,0.0000014510105,0.00076475187,0.0007106884,0.000008978319],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021150337,0.00005555919,0.00006117457,0.005455116,0.000059644924,1.04610166e-7,0.0000078019475,1.9127975e-7,0.13825026,0.00021335107,0.0011565535,0.8547191],"study_design_scores_gemma":[0.00024704062,0.00010893718,0.00004743478,0.0018079991,0.000039072012,0.00009638591,0.0000010139559,1.17386314e-7,0.0015932799,0.00002735141,0.9957575,0.00027382286],"about_ca_topic_score_codex":0.0000063929406,"about_ca_topic_score_gemma":0.000025277772,"teacher_disagreement_score":0.994601,"about_ca_system_score_codex":0.00002239101,"about_ca_system_score_gemma":0.00030125453,"threshold_uncertainty_score":0.9999838},"labels":[],"label_agreement":null},{"id":"W2008718124","doi":"10.1371/journal.pone.0080739","title":"Glycosylation of the Escherichia coli TibA Self-Associating Autotransporter Influences the Conformation and the Functionality of the Protein","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Bacterial adhesin; Glycosylation; Glycosyltransferase; Escherichia coli; Operon; Biology; Biochemistry; Microbiology; Bacteria; Gene; Genetics","score_opus":0.009067706042294142,"score_gpt":0.17771572523883516,"score_spread":0.16864801919654102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008718124","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99652314,0.000098489516,0.000012188206,0.0025392924,0.000031406078,0.0006367978,0.000010720821,0.000004409912,0.00014355348],"genre_scores_gemma":[0.99949276,0.00003991903,0.00015834007,0.00016056129,0.000039129325,0.000046140776,0.000005664507,0.0000035363116,0.000053940134],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99940276,0.000092468836,0.00020641625,0.00007801288,0.00013895034,0.00008140119],"domain_scores_gemma":[0.9993513,0.000017823355,0.0002648181,0.00022488776,0.00013295937,0.000008191176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026821706,0.0000614566,0.00009009041,0.000004932798,0.000117718526,0.000011164921,0.00018100803,0.00011482468,0.000010324664],"category_scores_gemma":[0.00007962538,0.000025760479,0.00004321084,0.00007389007,0.00022075,0.0000045425572,0.000074084455,0.00008636331,6.619339e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021736452,0.000052470506,0.009167606,0.000027405997,0.00009760549,2.164043e-9,0.00014089714,0.0000040336186,0.9898348,0.00042795838,0.0000102861395,0.00021518981],"study_design_scores_gemma":[0.00033141024,0.000049434217,0.29584593,0.00002239097,0.000056040157,1.9574603e-7,0.000059932776,0.0003264686,0.70255303,0.0005134712,0.00020148455,0.000040178486],"about_ca_topic_score_codex":0.00012736848,"about_ca_topic_score_gemma":0.000049853494,"teacher_disagreement_score":0.28728175,"about_ca_system_score_codex":0.000005149733,"about_ca_system_score_gemma":0.000040726034,"threshold_uncertainty_score":0.10504819},"labels":[],"label_agreement":null},{"id":"W2008817593","doi":"10.1021/bi060022j","title":"Conformation of the Cell Division Regulator MinE:  Evidence for Interactions between the Topological Specificity and Anti-MinCD Domains","year":2006,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"University of Ottawa","keywords":"Domain (mathematical analysis); Function (biology); Topology (electrical circuits); Cell division; Mutant; Regulator; Chemistry; Protein structure; Biophysics; Amide; Stereochemistry; Crystallography; Biology; Cell; Biochemistry; Cell biology; Gene; Mathematics","score_opus":0.016974972877305268,"score_gpt":0.2634784172121294,"score_spread":0.24650344433482413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008817593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978232,0.0004576813,0.0004534082,0.0007373372,0.000103223036,0.00019221255,0.00006795101,0.000005601367,0.00015943244],"genre_scores_gemma":[0.998919,0.00007518731,0.00033449035,0.000030978365,0.0002765134,0.000010074998,0.00005757153,0.000005505816,0.0002906534],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993921,0.000020024901,0.00020967255,0.0001870301,0.00006765763,0.0001235162],"domain_scores_gemma":[0.99936354,0.0000442917,0.00018475285,0.00032349644,0.000063897176,0.000020049301],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012663665,0.00009929939,0.00010080824,0.000008636096,0.00011768118,0.00001441391,0.00021933856,0.00019773305,0.0000056026047],"category_scores_gemma":[0.000091129186,0.00005953487,0.00007521387,0.000051088024,0.0002620611,0.0000028060417,0.00017207391,0.000070409995,4.185518e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018996261,0.000020894475,0.007950128,0.000028416775,0.000006909081,4.2543025e-8,0.0000037569039,0.0000021157102,0.9905038,0.000044372166,0.0011040855,0.00031648204],"study_design_scores_gemma":[0.00017388901,0.000051409068,0.064270526,0.000017070015,0.000018799397,0.0000039909037,0.000028968981,0.000017009079,0.92941606,0.00009835599,0.0058290767,0.000074842654],"about_ca_topic_score_codex":0.000016547578,"about_ca_topic_score_gemma":0.0000057514053,"teacher_disagreement_score":0.06108774,"about_ca_system_score_codex":0.000008727186,"about_ca_system_score_gemma":0.000027019529,"threshold_uncertainty_score":0.24277614},"labels":[],"label_agreement":null},{"id":"W2009314991","doi":"10.1016/j.femsle.2005.07.028","title":"Transcriptional regulation of the S-layer protein type I secretion system in<i>Caulobacter crescentus</i>","year":2005,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Caulobacter crescentus; Operon; Transcription (linguistics); Secretion; Biology; Gene; Transcriptional regulation; Transcription factor; Cell biology; Escherichia coli; Genetics; Biochemistry; Bacterial protein","score_opus":0.00580209244091811,"score_gpt":0.18724537646702646,"score_spread":0.18144328402610835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009314991","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99659306,0.00014975578,0.00012391845,0.0023536815,0.00036672945,0.00031011907,0.000032307402,0.0000106883945,0.000059769867],"genre_scores_gemma":[0.9983986,0.000011583861,0.00039752864,0.000663895,0.00021777976,0.0000120726445,0.00016663322,0.000012673903,0.000119209144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913496,0.00009804795,0.00026416781,0.00026157984,0.000036120928,0.0002051394],"domain_scores_gemma":[0.9995444,0.0000025873308,0.00011362502,0.0002762453,0.000045571764,0.000017560362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012434016,0.00012743213,0.00013393813,0.00004875924,0.000038366445,0.0000059033655,0.0002067121,0.00032718308,0.000019512083],"category_scores_gemma":[0.000009222796,0.00009873918,0.000076190074,0.00010832387,0.00016431765,0.0000031227116,0.000060239832,0.00012016132,0.000010349975],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010545562,0.000029077653,0.0013887741,0.000014691415,0.000020038786,2.5417242e-7,0.000017689401,0.00006879248,0.9972348,0.00015571916,0.0006675546,0.0002971417],"study_design_scores_gemma":[0.00047603418,0.00008892786,0.020069424,0.00003624964,0.000009000818,0.000030185409,0.000010957748,0.000020088128,0.9218991,0.000004082508,0.057237536,0.0001184314],"about_ca_topic_score_codex":0.000013658588,"about_ca_topic_score_gemma":0.00007180071,"teacher_disagreement_score":0.075335726,"about_ca_system_score_codex":0.0000364754,"about_ca_system_score_gemma":0.000030737225,"threshold_uncertainty_score":0.4026467},"labels":[],"label_agreement":null},{"id":"W2009847553","doi":"10.1016/j.compbiolchem.2008.01.001","title":"Water-mediated interactions in the CRP–cAMP–DNA complex: Does water mediate sequence-specific binding at the DNA primary-kink site?","year":2008,"lang":"en","type":"article","venue":"Computational Biology and Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University","funders":"Core Research for Evolutional Science and Technology; Natural Sciences and Engineering Research Council of Canada","keywords":"Hydrogen bond; DNA; Base pair; Chemistry; Crystallography; Sequence (biology); DNA sequencing; Base (topology); Molecular dynamics; Binding site; Escherichia coli; Molecule; Biophysics; Stereochemistry; Biology; Biochemistry; Computational chemistry; Gene; Organic chemistry","score_opus":0.02121107132538371,"score_gpt":0.24871490472500418,"score_spread":0.22750383339962046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009847553","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958123,0.00021299819,0.000034160465,0.0031858878,0.00016949468,0.00012812995,0.00013804359,0.000015568856,0.00030340295],"genre_scores_gemma":[0.9919607,0.00044858764,0.00009959968,0.0006105803,0.00026427794,0.00003082883,0.0063233674,0.000011205408,0.00025087563],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988373,0.00008770827,0.00027390075,0.00039955272,0.00008096039,0.00032059688],"domain_scores_gemma":[0.9995181,0.00007746704,0.000062746105,0.00023960616,0.000059584876,0.000042485706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018413828,0.00019543455,0.00016684333,0.000030012265,0.00037937914,0.000021650958,0.000287234,0.00025929624,0.00015919158],"category_scores_gemma":[0.000017670402,0.00009128663,0.000062227664,0.000064343,0.00072992325,0.000004614493,0.00027945585,0.0002341731,0.00004467725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000062118874,0.00004170535,0.0035668046,0.000009419414,0.000031451134,0.000008660525,0.00021289033,0.000033247503,0.9951161,0.000016234448,0.00065178424,0.00024958167],"study_design_scores_gemma":[0.0005724679,0.000057665573,0.00820055,0.0000073459896,0.000010104048,0.0003219428,0.00009623529,0.000053558975,0.89993006,0.00043574313,0.09007679,0.00023750954],"about_ca_topic_score_codex":0.000006233709,"about_ca_topic_score_gemma":0.000023426013,"teacher_disagreement_score":0.09518601,"about_ca_system_score_codex":0.000027909406,"about_ca_system_score_gemma":0.000029759402,"threshold_uncertainty_score":0.3722561},"labels":[],"label_agreement":null},{"id":"W2009963071","doi":"10.1186/1741-7007-11-106","title":"Non-coding-regulatory regions of human brain genes delineated by bacterial artificial chromosome knock-in mice","year":2013,"lang":"en","type":"article","venue":"BMC Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Simon Fraser University; Child and Family Research Institute; University of British Columbia","funders":"Genome British Columbia; Child and Family Research Institute; Genome Canada; GlaxoSmithKline","keywords":"Biology; Gene; Gene knockin; Human genome; Genetics; Bacterial artificial chromosome; Locus (genetics); Genome; Regulation of gene expression; Regulatory sequence; Computational biology","score_opus":0.014523719946466958,"score_gpt":0.2483135449227368,"score_spread":0.23378982497626985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009963071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979133,0.00039881913,0.0004070352,0.00041290512,0.00036720524,0.00033391075,0.00007622567,0.000018136456,0.00007245348],"genre_scores_gemma":[0.9977059,0.000086654625,0.00052983226,0.00013392627,0.00045557332,0.00005118498,0.0008054938,0.000027381462,0.00020405202],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984123,0.00010499775,0.00052334956,0.00050570304,0.000047676123,0.00040597183],"domain_scores_gemma":[0.9992207,0.000017400784,0.0001855666,0.00040334507,0.00010156309,0.00007142044],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015415263,0.00023144003,0.00034427748,0.00010799623,0.000061203595,0.000014114978,0.00034245593,0.00083130604,0.000138337],"category_scores_gemma":[0.000050600796,0.00021808468,0.00010394719,0.0001364211,0.00034625197,0.0000037307523,0.00019709268,0.00011617305,0.000024129646],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051449835,0.00010165846,0.0022621206,0.000015075371,0.000026571026,4.807701e-7,0.000008901677,0.000001844808,0.9926064,0.0002470463,0.0033631665,0.0013152835],"study_design_scores_gemma":[0.00063814217,0.00064014125,0.005633788,0.000010329215,0.000010456285,0.000007836324,0.000020565642,0.00005695213,0.9826523,0.00039001452,0.00967334,0.0002661257],"about_ca_topic_score_codex":0.00029709603,"about_ca_topic_score_gemma":0.000551885,"teacher_disagreement_score":0.009954093,"about_ca_system_score_codex":0.000014729417,"about_ca_system_score_gemma":0.000079220226,"threshold_uncertainty_score":0.88932353},"labels":[],"label_agreement":null},{"id":"W2010005033","doi":"10.1016/j.str.2010.08.015","title":"Structure of a SLC26 Anion Transporter STAS Domain in Complex with Acyl Carrier Protein: Implications for E. coli YchM in Fatty Acid Metabolism","year":2010,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Acyl carrier protein; Biochemistry; Mutant; Fatty acid; Membrane transport protein; Transport protein; Transporter; Biology; Escherichia coli; Mutation; Fatty acid metabolism; Chemistry; Gene","score_opus":0.006044632183478684,"score_gpt":0.23269203869175392,"score_spread":0.22664740650827525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010005033","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962752,0.00007844039,0.00036900898,0.0005424413,0.000109301545,0.00083349727,0.001773376,0.000006008652,0.00001272889],"genre_scores_gemma":[0.98550946,0.00001069114,0.013578718,0.0000844118,0.00014276376,0.000034475986,0.00060893,0.000024500174,0.000006056651],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901366,0.00002604821,0.00027684122,0.00034310148,0.00006804851,0.0002722841],"domain_scores_gemma":[0.99930567,0.0000027579545,0.0001315722,0.00039843714,0.00010694633,0.000054596945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005527003,0.0001972462,0.00026674222,0.00008654551,0.00004544201,0.000015288899,0.0002601428,0.000528146,0.000042766562],"category_scores_gemma":[0.000013057555,0.00015318108,0.000055663706,0.00017255134,0.00016345529,0.000004578771,0.00003439859,0.0002909875,5.371481e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023698808,0.000020388354,0.003381015,0.000029419683,0.000026520318,7.895445e-7,0.00009452671,0.000005629751,0.9938543,0.0011484053,0.000041069015,0.0011609631],"study_design_scores_gemma":[0.0013007936,0.00019213407,0.2016185,0.0000066026696,0.000014378631,0.00002279583,0.00004234374,0.0000016418861,0.7780501,0.004602911,0.013970984,0.00017679778],"about_ca_topic_score_codex":0.000024558822,"about_ca_topic_score_gemma":0.00377656,"teacher_disagreement_score":0.21580416,"about_ca_system_score_codex":0.000008082329,"about_ca_system_score_gemma":0.00010410818,"threshold_uncertainty_score":0.62465435},"labels":[],"label_agreement":null},{"id":"W2010230246","doi":"10.1101/gr.3257305","title":"Genome-wide identification of <i>Pseudomonas aeruginosa</i> exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen","year":2005,"lang":"en","type":"article","venue":"Genome Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Genome Canada","keywords":"Signal peptide; Protein Sorting Signals; Biology; Proteome; Computational biology; Genome; Transmembrane protein; Consensus sequence; Fusion protein; Biochemistry; Peptide sequence; Gene; Recombinant DNA","score_opus":0.031966647316705475,"score_gpt":0.2985015184113944,"score_spread":0.26653487109468893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010230246","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946898,0.00035592122,0.0033288463,0.00044752966,0.000017519837,0.0008648485,0.00021587693,0.000018696124,0.000060941406],"genre_scores_gemma":[0.9916383,0.00004065824,0.0074270647,0.000046225327,0.00011164119,0.00004040524,0.00059567223,0.000033310374,0.000066705616],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979597,0.00021096418,0.00044416529,0.000494715,0.00045123778,0.00043923585],"domain_scores_gemma":[0.9981994,0.000029919633,0.00020116608,0.0004815304,0.0009731761,0.000114821894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078033126,0.00018148837,0.00022062997,0.00023797537,0.00018600312,0.000049452065,0.0003123255,0.00027239852,0.00003480098],"category_scores_gemma":[0.000059549453,0.00016867738,0.00005139606,0.000540327,0.00045839936,0.0000042582456,0.00014218646,0.0002212396,0.000011169355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00066429307,0.00020371914,0.00081135944,0.00003861494,0.000055459448,0.0000069329844,0.000024288443,0.006927863,0.99087995,0.000038551665,0.00002224101,0.0003267493],"study_design_scores_gemma":[0.0020103548,0.0016127246,0.020091789,0.000021913667,0.000019931249,0.000012254464,0.000115036,0.0026441433,0.9691924,0.000060224025,0.003929137,0.00029013457],"about_ca_topic_score_codex":0.000054582135,"about_ca_topic_score_gemma":0.00007587842,"teacher_disagreement_score":0.021687571,"about_ca_system_score_codex":0.000056010274,"about_ca_system_score_gemma":0.00079971127,"threshold_uncertainty_score":0.68784636},"labels":[],"label_agreement":null},{"id":"W2010891932","doi":"10.1016/j.vetmic.2015.03.024","title":"Interplay between iron homeostasis and virulence: Fur and RyhB as major regulators of bacterial pathogenicity","year":2015,"lang":"en","type":"review","venue":"Veterinary Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":175,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Université de Montréal; Armand Frappier Museum","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Armand-Frappier Foundation","keywords":"Biology; Virulence; Iron homeostasis; Biofilm; Bacteria; Pathogenic bacteria; Quorum sensing; Microbiology; Pathogen; Homeostasis; Escherichia coli; Cell biology; Genetics; Gene","score_opus":0.024131239469367936,"score_gpt":0.3117895850945146,"score_spread":0.28765834562514664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010891932","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.45022696,0.5480564,0.000002446866,0.00001042664,0.00029382305,0.0003030469,0.0010793476,0.000009889844,0.000017602675],"genre_scores_gemma":[0.018375216,0.978639,0.00045580365,0.000024090676,0.00037303616,0.00002755536,0.0019608717,0.00006375257,0.00008067174],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99760514,0.0003474661,0.0006989809,0.00089580915,0.000042678843,0.0004099435],"domain_scores_gemma":[0.99873185,0.000028647917,0.00046940896,0.0005780978,0.00007187306,0.000120137775],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00032133094,0.00056962896,0.00156315,0.00017787542,0.000056684417,0.000020876074,0.00040905463,0.0018540414,0.00003283815],"category_scores_gemma":[0.000047670444,0.0004873514,0.00020707291,0.00010954314,0.0006905567,0.0000040897585,0.0012702547,0.00026464422,0.000009748512],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011811759,0.000025358362,0.000008833512,0.0014066865,0.0001763579,0.000011617055,0.000014485393,6.2332517e-9,0.5974752,0.000006715839,0.00018016718,0.40057644],"study_design_scores_gemma":[0.00043575096,0.0035492058,0.000016703052,0.00046397984,0.00035716614,0.0015817822,0.000012429021,4.1033648e-8,0.015033305,0.000019080733,0.97802895,0.00050160877],"about_ca_topic_score_codex":0.000019825336,"about_ca_topic_score_gemma":0.000005166349,"teacher_disagreement_score":0.97784877,"about_ca_system_score_codex":0.00002635995,"about_ca_system_score_gemma":0.00018124345,"threshold_uncertainty_score":0.9997578},"labels":[],"label_agreement":null},{"id":"W2010983045","doi":"10.1016/j.abb.2012.02.007","title":"Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria","year":2012,"lang":"en","type":"review","venue":"Archives of Biochemistry and Biophysics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":374,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"rpoS; Regulon; Oxidative stress; Escherichia coli; Reactive oxygen species; Gammaproteobacteria; Bacteria; Biology; Oxidative phosphorylation; Alphaproteobacteria; Superoxide dismutase; Biochemistry; Gene; Microbiology; Genetics; Gene expression; Promoter","score_opus":0.016538975673509322,"score_gpt":0.2402438454062463,"score_spread":0.22370486973273698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010983045","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.62276477,0.3767824,0.000008143797,0.000014106542,0.000032329972,0.00013697287,0.00024863495,0.0000017534824,0.000010880408],"genre_scores_gemma":[0.22561653,0.7732018,0.0004881492,0.000006812277,0.00009067631,0.00001842876,0.00052798906,0.000018160194,0.000031439227],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988493,0.0001271659,0.00044070673,0.0003561066,0.00004762191,0.00017910075],"domain_scores_gemma":[0.99923545,0.00008160358,0.00034692537,0.00026481572,0.00002411405,0.000047092257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012950467,0.00028639074,0.00063945627,0.000084574946,0.000019091769,0.000007133205,0.00013703201,0.0004264224,0.0000020404148],"category_scores_gemma":[0.000030447085,0.00024030407,0.00010145851,0.00014827217,0.0004957561,0.000003923967,0.0002295607,0.00014721966,9.966285e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031146503,0.0001024307,0.00024759726,0.002154707,0.00006442604,3.9662785e-7,0.00003518602,2.3661407e-7,0.8872885,0.0000288471,0.0000018999589,0.10976427],"study_design_scores_gemma":[0.000357525,0.00017721533,0.0026007826,0.0012605118,0.00006177314,0.000006510317,0.000075260716,0.000004919356,0.9758854,0.00011172274,0.019165292,0.0002930941],"about_ca_topic_score_codex":0.000015612897,"about_ca_topic_score_gemma":0.00000816777,"teacher_disagreement_score":0.39714828,"about_ca_system_score_codex":0.000006122461,"about_ca_system_score_gemma":0.00013937517,"threshold_uncertainty_score":0.9799316},"labels":[],"label_agreement":null},{"id":"W2011066018","doi":"10.1016/j.sbi.2008.04.001","title":"Periplasmic export machines for outer membrane assembly","year":2008,"lang":"en","type":"review","venue":"Current Opinion in Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council; Wellcome Trust","keywords":"Bacterial outer membrane; Periplasmic space; Cell envelope; Cell biology; Biology; Membrane; Organelle; Glycoconjugate; Innate immune system; Chemistry; Biochemistry; Immune system; Escherichia coli; Genetics","score_opus":0.056424905433653826,"score_gpt":0.37385192992833277,"score_spread":0.31742702449467897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011066018","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0032696256,0.98204947,0.000050469273,0.000034505323,0.0128896125,0.0010509623,0.00060239923,0.000025879897,0.000027060361],"genre_scores_gemma":[0.00045533385,0.98839056,0.0004305885,0.000014852932,0.002174714,0.00028416142,0.008140825,0.000061036284,0.00004791919],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973695,0.00014303131,0.0008491073,0.0010022188,0.0000663539,0.0005697311],"domain_scores_gemma":[0.9988631,0.00003550442,0.00040359513,0.0005408955,0.0000733279,0.00008355182],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00009288329,0.0006536668,0.0013084781,0.00023037074,0.00008948389,0.000020372257,0.0006178301,0.0013855472,0.00002208447],"category_scores_gemma":[0.000080686725,0.0004971826,0.0005428525,0.00015570437,0.00023816965,0.0000031711857,0.00032505635,0.00039133595,0.000010454585],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049760944,0.000024203684,0.00005763316,0.0031702565,0.00009622766,7.3149096e-7,0.000008849448,4.1303866e-7,0.0035673287,0.00032657172,0.0015725029,0.9911255],"study_design_scores_gemma":[0.00048735455,0.0003357267,0.000031290052,0.00060160446,0.000034938763,0.000246142,0.0000020308555,0.000011474543,0.0003803183,0.00010061753,0.9971828,0.0005857062],"about_ca_topic_score_codex":0.0000060121006,"about_ca_topic_score_gemma":0.000004649349,"teacher_disagreement_score":0.9956103,"about_ca_system_score_codex":0.00004049305,"about_ca_system_score_gemma":0.00022020961,"threshold_uncertainty_score":0.9999109},"labels":[],"label_agreement":null},{"id":"W2011133126","doi":"10.1006/jtbi.2000.2179","title":"Regulation of Competence Development in Haemophilus influenzae","year":2000,"lang":"en","type":"article","venue":"Journal of Theoretical Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Gene; Competence (human resources); Regulator; Genetics; Regulatory sequence; Computational biology; Regulation of gene expression; Psychology","score_opus":0.006568799111385221,"score_gpt":0.23904309212129532,"score_spread":0.2324742930099101,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011133126","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841595,0.00029886112,0.00023516436,0.00033703458,0.000108167544,0.000051914063,0.0000028938773,0.0000016248839,0.000548409],"genre_scores_gemma":[0.9956261,0.00020577658,0.0039155404,0.00011764222,0.00010062416,9.099361e-7,0.000007828554,0.00000580911,0.000019794381],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990475,0.00008947903,0.0005215597,0.00012408779,0.000059025373,0.00015834278],"domain_scores_gemma":[0.9995331,0.000020796624,0.00016583056,0.00014184417,0.00009438665,0.00004400468],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033411017,0.00009023291,0.00022842368,0.000079914586,0.0000147006895,0.000003345038,0.00022953613,0.00028134094,0.00023894825],"category_scores_gemma":[0.000102734215,0.00006939953,0.00006148686,0.00008501019,0.00045162492,0.0000018405991,0.000053370517,0.00011978056,0.0000044530825],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041851852,0.0000727278,0.002230173,0.0000057606208,0.000025359865,0.0000023284415,0.000020559584,0.000038899238,0.9480569,0.021934584,0.000024426752,0.027169801],"study_design_scores_gemma":[0.00091362296,0.0012251782,0.027465424,0.00003624539,0.000011378324,0.000118385324,0.00001137151,0.000028186101,0.9221712,0.019864807,0.028009009,0.00014520319],"about_ca_topic_score_codex":0.0000013583827,"about_ca_topic_score_gemma":0.000003136226,"teacher_disagreement_score":0.027984582,"about_ca_system_score_codex":0.000011777726,"about_ca_system_score_gemma":0.00007756558,"threshold_uncertainty_score":0.2830031},"labels":[],"label_agreement":null},{"id":"W2011420278","doi":"10.1016/s0014-5793(02)03839-5","title":"DmsD is required for the biogenesis of DMSO reductase in <i>Escherichia coli</i> but not for the interaction of the DmsA signal peptide with the Tat apparatus","year":2002,"lang":"en","type":"article","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biogenesis; Periplasmic space; Escherichia coli; Signal peptide; Mutant; Translocase; Fusion protein; Biochemistry; Reductase; Protein subunit; Chemistry; Peptide; Biology; Enzyme; Peptide sequence; Gene; Chromosomal translocation","score_opus":0.015809015671525057,"score_gpt":0.22392494913845679,"score_spread":0.20811593346693172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011420278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96311975,0.0005808699,0.0011278028,0.033848148,0.00023259057,0.0008879607,0.00018537143,0.00000385552,0.000013671054],"genre_scores_gemma":[0.9941285,0.00016892744,0.0003470108,0.004797421,0.00019166162,0.00017329492,0.0000137502175,0.000020638345,0.00015874385],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912566,0.000062055595,0.00024212121,0.0002420867,0.00010198774,0.000226071],"domain_scores_gemma":[0.99904466,0.0001141312,0.00023075561,0.0005250193,0.00006892166,0.000016519327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021050741,0.00015432472,0.00015352467,0.000022760127,0.0001414402,0.000019834431,0.00049064687,0.00013197122,0.000009161644],"category_scores_gemma":[0.000034331893,0.00006961717,0.0001550666,0.00015742792,0.0003986819,0.0000037061557,0.00008336995,0.00010365314,6.812594e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046486023,0.000032782667,0.00008942822,0.000017073775,0.00010668813,1.933025e-7,0.00011649628,0.00014766867,0.9777831,0.000019434243,0.02015647,0.0010658071],"study_design_scores_gemma":[0.00057642383,0.00027307795,0.0006346418,0.000014623601,0.00008529631,0.0000046129144,0.00027311555,0.00042235176,0.933746,0.000006608958,0.06386069,0.00010257153],"about_ca_topic_score_codex":0.0001222349,"about_ca_topic_score_gemma":0.00012876188,"teacher_disagreement_score":0.04403712,"about_ca_system_score_codex":0.0000114681625,"about_ca_system_score_gemma":0.000024222994,"threshold_uncertainty_score":0.28389058},"labels":[],"label_agreement":null},{"id":"W2011574741","doi":"10.1074/jbc.m203867200","title":"Three Highly Conserved Proteins Catalyze the Conversion of UDP-N-acetyl-d-glucosamine to Precursors for the Biosynthesis of O Antigen in Pseudomonas aeruginosaO11 and Capsule in Staphylococcus aureus Type 5","year":2003,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; University of Guelph","funders":"U.S. Public Health Service; Directorate for Biological Sciences; National Institutes of Health","keywords":"Biosynthesis; Staphylococcus aureus; Chemistry; Glucosamine; Pseudomonas; Capsule; Microbiology; Biochemistry; Pseudomonas aeruginosa; Stereochemistry; Bacteria; Biology; Enzyme","score_opus":0.017610452701250674,"score_gpt":0.23340321015954882,"score_spread":0.21579275745829815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011574741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967022,0.0021043927,0.00007998055,0.0006371424,0.00006109917,0.00035551598,0.00004051133,0.0000013923744,0.000017785775],"genre_scores_gemma":[0.9980777,0.0009822854,0.0008212972,0.00004215195,0.000045217337,0.000009449373,0.000007764481,0.0000065947715,0.000007560175],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990558,0.000048508526,0.00044672168,0.00018371774,0.000079478916,0.00018575157],"domain_scores_gemma":[0.99918693,0.00008316643,0.00030733866,0.00022595373,0.00014862264,0.000047995825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005201709,0.00013811523,0.00030058654,0.000031196818,0.000028886774,0.0000065389263,0.00031737992,0.00032089453,0.000010157678],"category_scores_gemma":[0.0006269138,0.00007502593,0.000089352354,0.00016284137,0.00027353843,0.000002289877,0.00009292923,0.0001468147,1.3752005e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045818242,0.00009787151,0.008832078,0.000042826825,0.00004335495,0.000002182668,0.000021351032,0.000011743451,0.99009186,0.000013234071,0.00007000646,0.00031531413],"study_design_scores_gemma":[0.00073725317,0.0007752574,0.012510633,0.000035672812,0.000014476453,0.00001485973,0.00014607873,0.000007917259,0.98302263,0.00006422694,0.0025751495,0.0000958699],"about_ca_topic_score_codex":0.000036324232,"about_ca_topic_score_gemma":0.00003962074,"teacher_disagreement_score":0.007069249,"about_ca_system_score_codex":0.000012804861,"about_ca_system_score_gemma":0.00008805522,"threshold_uncertainty_score":0.30594686},"labels":[],"label_agreement":null},{"id":"W2011938303","doi":"10.1128/aac.46.6.2035-2037.2002","title":"Nonradiolabeling Assay for WaaP, an Essential Sugar Kinase Involved in Biosynthesis of Core Lipopolysaccharide of <i>Pseudomonas aeruginosa</i>","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Pseudomonas aeruginosa; Lipopolysaccharide; Heptose; Biochemistry; Chemistry; Kinase; Enzyme; Monoclonal antibody; Bacteria; Microbiology; Molecular biology; Biology; Gene; Antibody; Immunology","score_opus":0.01717427935553977,"score_gpt":0.24252996558768447,"score_spread":0.2253556862321447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011938303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99871576,0.00014728526,0.00018543939,0.00045150195,0.00011702052,0.00025840467,0.000098694414,0.000006724776,0.00001915449],"genre_scores_gemma":[0.99430895,0.0028997483,0.0019461211,0.0005938354,0.00011897371,0.0000060635534,0.000062023835,0.000028946475,0.00003531165],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989729,0.000027861064,0.00034863938,0.00034894087,0.00006104609,0.00024061477],"domain_scores_gemma":[0.9994437,0.0000121289695,0.00016143413,0.00026414453,0.000068928726,0.00004967373],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014535277,0.00018279887,0.00030907072,0.00007914513,0.0000398065,0.000012650984,0.0002006367,0.00029651518,0.000035513935],"category_scores_gemma":[0.000019223533,0.00017393928,0.000097837445,0.00007814483,0.00015834474,0.0000057546245,0.000051506013,0.00005943903,4.0467395e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019105639,0.00036151859,0.0066737887,0.000056650246,0.00005922605,0.0000011853181,0.00008223481,0.0000037785203,0.98523957,0.000041666888,0.0007349972,0.0065543326],"study_design_scores_gemma":[0.0014766286,0.00041443435,0.00077610527,0.00003806763,0.000022429627,0.0000035348337,0.000029327508,0.00026946896,0.99297714,0.00003676633,0.003757913,0.00019815973],"about_ca_topic_score_codex":0.000097592245,"about_ca_topic_score_gemma":0.00009977382,"teacher_disagreement_score":0.0077376,"about_ca_system_score_codex":0.000005149401,"about_ca_system_score_gemma":0.00001648129,"threshold_uncertainty_score":0.70930374},"labels":[],"label_agreement":null},{"id":"W2012511424","doi":"10.1046/j.1365-2958.2001.02404.x","title":"Physiological consequences of blocked <i>Caulobacter crescentus dnaA</i> expression, an essential DNA replication gene","year":2001,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Caulobacter crescentus; DnaA; Biology; DNA replication; Transcription (linguistics); Cell cycle; Cell division; Origin of replication; Cell biology; Origin recognition complex; Control of chromosome duplication; Pre-replication complex; Molecular biology; Genetics; Gene; Eukaryotic DNA replication; Cell","score_opus":0.008276265642654384,"score_gpt":0.23777441000181757,"score_spread":0.2294981443591632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012511424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973093,0.00052520167,0.0011973607,0.00030155483,0.00021363924,0.00026650174,0.00007304255,0.00003260305,0.00008076607],"genre_scores_gemma":[0.9956898,0.00039881302,0.0019563518,0.00053843035,0.0001595513,0.00002473213,0.0011410385,0.000025201887,0.00006605561],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980454,0.00023078163,0.00042285005,0.00084265263,0.00005467963,0.00040368052],"domain_scores_gemma":[0.99850994,0.000005638409,0.00023310467,0.0010127077,0.00014830047,0.00009030645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015969068,0.00025951775,0.0003207092,0.00006561535,0.00007177944,0.000014477773,0.00049030123,0.00068576494,0.00007343719],"category_scores_gemma":[0.00006481467,0.00022520001,0.00013905492,0.0001292009,0.00065085344,0.000004120772,0.00025566877,0.00013096556,0.0000111368545],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021333527,0.00019201836,0.00035252006,0.0000068611157,0.000047827765,0.000016071192,0.000010978057,0.000009604632,0.99810916,0.00008643563,0.00036123433,0.00059392775],"study_design_scores_gemma":[0.00055556564,0.00070168695,0.0006193415,0.000008095355,0.00002436976,0.00023951523,0.00001520591,0.0000030147653,0.9756904,0.00014306781,0.021739336,0.0002603778],"about_ca_topic_score_codex":0.000018682462,"about_ca_topic_score_gemma":0.000008714119,"teacher_disagreement_score":0.022418762,"about_ca_system_score_codex":0.000010347035,"about_ca_system_score_gemma":0.00006184762,"threshold_uncertainty_score":0.918339},"labels":[],"label_agreement":null},{"id":"W2012889157","doi":"10.1016/j.febslet.2004.11.098","title":"2‐Aminoperimidine, a specific inhibitor of bacterial NhaA Na<sup>+</sup>/H<sup>+</sup> antiporters","year":2004,"lang":"en","type":"article","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Antiporters; Amiloride; Chemistry; Escherichia coli; Biochemistry; Sodium; Antiporter; Membrane","score_opus":0.00854597192162432,"score_gpt":0.20453030257851076,"score_spread":0.19598433065688645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012889157","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99544585,0.0002706704,0.00057617587,0.0023327728,0.0006003904,0.0004027714,0.00015518161,0.000054923697,0.0001612872],"genre_scores_gemma":[0.99355966,0.00031685896,0.00243361,0.001418231,0.0015386043,0.000026059926,0.0005155141,0.00008368229,0.000107756525],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99741244,0.000075118325,0.0006698992,0.00086550426,0.00026895938,0.00070805894],"domain_scores_gemma":[0.9985923,0.000010654543,0.00023856717,0.00089300214,0.00009710327,0.00016837688],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019483104,0.00048818818,0.0005112018,0.00018049487,0.00011358183,0.00007069602,0.0005799736,0.0006132342,0.00015398265],"category_scores_gemma":[0.0000400286,0.00047578785,0.00028460522,0.00025041949,0.00046047015,0.000013559531,0.00030136027,0.00027117677,0.00007714898],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003706123,0.00015132224,0.0003240298,0.00003997643,0.0001170772,0.000035673922,0.00020909071,0.0011768247,0.9895867,0.000058351186,0.0061686626,0.0017616969],"study_design_scores_gemma":[0.0021698875,0.0006910972,0.00063404423,0.00005375578,0.000043934677,0.00007092656,0.00015122397,0.00004661074,0.88789696,0.000019188159,0.10763742,0.0005849743],"about_ca_topic_score_codex":0.000044188404,"about_ca_topic_score_gemma":0.000006203532,"teacher_disagreement_score":0.10168975,"about_ca_system_score_codex":0.00005754228,"about_ca_system_score_gemma":0.00011763989,"threshold_uncertainty_score":0.9997694},"labels":[],"label_agreement":null},{"id":"W2013106856","doi":"10.1128/jb.00023-07","title":"The Autotransporter Esterase EstA of <i>Pseudomonas aeruginosa</i> Is Required for Rhamnolipid Production, Cell Motility, and Biofilm Formation","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":180,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Infection and Immunity; Deutsche Forschungsgemeinschaft","keywords":"Rhamnolipid; Pseudomonas aeruginosa; Biofilm; Biology; Swarming motility; Mutant; Motility; Microbiology; Extracellular; Bacterial outer membrane; Biochemistry; Escherichia coli; Cell biology; Bacteria; Quorum sensing; Gene; Genetics","score_opus":0.009586621028351722,"score_gpt":0.2345271762797995,"score_spread":0.22494055525144777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013106856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99523747,0.00056116603,0.00183902,0.0013840242,0.00070818333,0.00021188192,0.000027561104,0.000003421272,0.000027248283],"genre_scores_gemma":[0.9966331,0.00089106255,0.0018279367,0.00015496409,0.00038333834,0.0000030468555,0.000020284775,0.000011976208,0.000074296746],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987901,0.00004201421,0.00068403373,0.00017605725,0.00006922419,0.00023860352],"domain_scores_gemma":[0.99878013,0.000031366253,0.0005750107,0.00024596124,0.0003069802,0.00006055829],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007633157,0.00013406765,0.00024080965,0.00007213907,0.000086792556,0.000014284056,0.00019520092,0.0002875753,0.0000032682383],"category_scores_gemma":[0.00006718282,0.00009390267,0.00011414342,0.000060478596,0.00025934837,0.0000089543155,0.000050351726,0.000109413384,3.4689361e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005875256,0.000050908824,0.0018013514,0.000044222208,0.000039767026,0.0000013401113,0.00007944382,0.0000019661293,0.9901408,0.000020735937,0.0005257227,0.0067062285],"study_design_scores_gemma":[0.00071267784,0.0012738636,0.012913292,0.000012889556,0.000040340736,0.0002498012,0.000071774,0.000009546321,0.9465004,0.00019971388,0.03792176,0.00009390396],"about_ca_topic_score_codex":0.000003393057,"about_ca_topic_score_gemma":0.000020336567,"teacher_disagreement_score":0.04364035,"about_ca_system_score_codex":0.0000101797605,"about_ca_system_score_gemma":0.00006108041,"threshold_uncertainty_score":0.382924},"labels":[],"label_agreement":null},{"id":"W2013256585","doi":"10.1371/journal.pone.0032684","title":"Pentachlorophenol Induction of the Pseudomonas aeruginosa mexAB-oprM Efflux Operon: Involvement of Repressors NalC and MexR and the Antirepressor ArmR","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Operon; Repressor; Pentachlorophenol; Efflux; Effector; Biology; Pseudomonas aeruginosa; Microbiology; Plasmid; Cell biology; Transcription factor; Mutant; Biochemistry; DNA; Genetics; Gene; Bacteria","score_opus":0.024195176489510993,"score_gpt":0.21401525874352395,"score_spread":0.18982008225401295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013256585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995988,0.0027401368,0.000008856843,0.000615874,0.00010635516,0.00039073254,0.000016417624,0.0000045394036,0.00012909029],"genre_scores_gemma":[0.9979134,0.0014111651,0.00032106836,0.00007305087,0.00015219621,0.000023174654,0.000009379323,0.000011640208,0.00008491302],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911135,0.0001093272,0.00024064358,0.00021661403,0.00015125854,0.00017078963],"domain_scores_gemma":[0.99922556,0.00001533304,0.00018172065,0.00047257644,0.00006589334,0.000038895014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003341904,0.00012196445,0.00022403523,0.00002165638,0.00007040976,0.000009741196,0.00019046356,0.00017114407,0.000010524202],"category_scores_gemma":[0.00007469208,0.000073291216,0.000047688896,0.00006446879,0.00051873276,0.0000049354,0.00042455905,0.00010058353,4.8546804e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011625326,0.0002887451,0.013818124,0.000065063585,0.00022202742,5.632258e-8,0.00018361391,8.167052e-7,0.98414534,0.0002724933,0.000022666954,0.00086480845],"study_design_scores_gemma":[0.0009204599,0.000138748,0.021904472,0.0000403087,0.00015465693,0.0000041957437,0.000120543526,0.000010366973,0.9761917,0.00008898431,0.00033842862,0.00008713096],"about_ca_topic_score_codex":0.00006139853,"about_ca_topic_score_gemma":0.00000980915,"teacher_disagreement_score":0.008086348,"about_ca_system_score_codex":0.000004597152,"about_ca_system_score_gemma":0.000014557201,"threshold_uncertainty_score":0.2988729},"labels":[],"label_agreement":null},{"id":"W2013504009","doi":"10.1016/j.jmb.2007.12.035","title":"The Nucleoid Binding Protein H-NS Acts as an Anti-Channeling Factor to Favor Intermolecular Tn10 Transposition and Dissemination","year":2007,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Vector Institute","keywords":"Tn10; Transposable element; Nucleoid; Biology; Tn3 transposon; DNA supercoil; DNA; Circular bacterial chromosome; Genetics; Mutant; DNA replication; Gene","score_opus":0.0054010433563891356,"score_gpt":0.27777532410259587,"score_spread":0.27237428074620673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013504009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9772697,0.00043053404,0.0205361,0.0011989292,0.00026877236,0.00025109792,0.000013895151,0.0000072317794,0.00002372024],"genre_scores_gemma":[0.9975999,0.00018094514,0.0017770671,0.00018917373,0.0001738191,0.000003458262,0.000026228023,0.000026068228,0.000023354722],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987196,0.00011657737,0.00043328936,0.00027656826,0.00011176219,0.00034220793],"domain_scores_gemma":[0.99912405,0.000021249185,0.00025830566,0.00022731737,0.00019681279,0.00017224262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058317615,0.00018821143,0.00020746194,0.00015839853,0.0001450761,0.000054426313,0.00030572008,0.00037501132,0.000003177061],"category_scores_gemma":[0.00023401725,0.00014054615,0.00010481951,0.00012038105,0.00012219654,0.000007875842,0.00008835555,0.00020942965,0.000001916799],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025107464,0.000043182878,0.000096525975,0.0000061907886,0.00006310686,0.000032913806,0.00007110127,0.000003470418,0.9863048,0.0005541929,0.000006098673,0.012567296],"study_design_scores_gemma":[0.00029117006,0.0023740935,0.0009470357,0.00004259962,0.000023709516,0.00022066176,0.00014809413,0.000007041226,0.99128366,0.00025017635,0.004234412,0.00017736387],"about_ca_topic_score_codex":0.0000033935526,"about_ca_topic_score_gemma":0.000017723974,"teacher_disagreement_score":0.020330168,"about_ca_system_score_codex":0.000020860003,"about_ca_system_score_gemma":0.000043817203,"threshold_uncertainty_score":0.5731306},"labels":[],"label_agreement":null},{"id":"W2013719025","doi":"10.1128/jb.184.13.3450-3456.2002","title":"<i>pfs</i><b>-</b>Dependent Regulation of Autoinducer 2 Production in<i>Salmonella enterica</i>Serovar Typhimurium","year":2002,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research; Heritage Medical Research Institute","keywords":"Biology; Salmonella enterica; Bioreporter; Autoinducer; Vibrio harveyi; Reporter gene; Microbiology; Quorum sensing; Homoserine; Gene expression; Gene; Vibrio; Biochemistry; Escherichia coli; Bacteria; Genetics; Virulence","score_opus":0.01168254336614977,"score_gpt":0.21831435342869693,"score_spread":0.20663181006254716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013719025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972589,0.0005384244,0.00007025319,0.00073285407,0.0010904126,0.00010736602,0.0000049580444,0.000004042072,0.00019279208],"genre_scores_gemma":[0.99730575,0.0010000479,0.0008394403,0.00007671109,0.0004903708,0.000002536227,0.000010970795,0.000016703934,0.00025747277],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99865735,0.00012225508,0.00067689334,0.00022909735,0.000104621366,0.00020978983],"domain_scores_gemma":[0.99888986,0.000008101267,0.00059157243,0.00027168565,0.00019068895,0.00004811478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030795357,0.00014482268,0.0003335785,0.00018053956,0.00002144158,0.000007011764,0.00022118063,0.000359929,0.00008453786],"category_scores_gemma":[0.000098613404,0.00012739231,0.00010783541,0.00012860309,0.00012511808,0.0000086504215,0.00008763104,0.00019417363,0.0000053530725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002005496,0.00015690517,0.0028687885,0.000014540234,0.000043292486,0.000005751986,0.0000386707,0.000064433014,0.99153763,0.0000125763645,0.00056486146,0.004491988],"study_design_scores_gemma":[0.00084888743,0.0015536172,0.061092597,0.000033543718,0.000026972135,0.0005260645,0.000034879384,0.00003202367,0.91968966,0.00013205616,0.015858795,0.00017091965],"about_ca_topic_score_codex":0.000008851175,"about_ca_topic_score_gemma":0.000014256953,"teacher_disagreement_score":0.071848,"about_ca_system_score_codex":0.000025557481,"about_ca_system_score_gemma":0.00003414198,"threshold_uncertainty_score":0.5194907},"labels":[],"label_agreement":null},{"id":"W2013947537","doi":"10.1128/jb.01642-05","title":"Glycosylation of b-Type Flagellin of <i>Pseudomonas aeruginosa</i> : Structural and Genetic Basis","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; Institute for Research in Immunology and Cancer; Université de Montréal; Caprion (Canada)","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Flagellin; Biology; Mutant; Glycosylation; Glycan; Gene; Serine; Wild type; Biochemistry; Molecular biology; Microbiology; Genetics; Glycoprotein; Phosphorylation","score_opus":0.005424724867186573,"score_gpt":0.2118729974085879,"score_spread":0.20644827254140133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013947537","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978714,0.0013415539,0.00021283112,0.000119918775,0.0003328011,0.00006386916,0.000015225217,0.0000017357418,0.000040665684],"genre_scores_gemma":[0.9944541,0.00069605507,0.0045094313,0.000025063518,0.00026505874,4.0126707e-7,0.000019861882,0.00001083423,0.000019193061],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989563,0.00007370442,0.0006094816,0.00014320645,0.00007212503,0.00014513284],"domain_scores_gemma":[0.99891305,0.000018367937,0.0006192809,0.00016638185,0.00024663188,0.000036270452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116286516,0.00012444242,0.00034024025,0.00010103017,0.00002030084,0.0000051686447,0.00015629303,0.00029939253,0.000020175488],"category_scores_gemma":[0.000044098175,0.00010397737,0.00008949826,0.0000824605,0.00021800789,0.0000038798044,0.00007502423,0.00009761533,3.8764182e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031051374,0.000023229548,0.01763878,0.00002288825,0.000046026253,0.0000045466045,0.000008390292,0.00006110595,0.9787825,0.000068585236,0.000064889544,0.0029685425],"study_design_scores_gemma":[0.0006511172,0.0015882635,0.19947957,0.000014796034,0.00004564037,0.000349126,0.000009227374,0.000029366096,0.7944031,0.00049709383,0.0028274169,0.00010529383],"about_ca_topic_score_codex":0.000034903856,"about_ca_topic_score_gemma":0.000022916622,"teacher_disagreement_score":0.1843794,"about_ca_system_score_codex":0.000006013308,"about_ca_system_score_gemma":0.000065519045,"threshold_uncertainty_score":0.42400742},"labels":[],"label_agreement":null},{"id":"W2015828459","doi":"10.1016/s1074-5521(01)00051-5","title":"Active site labeling of the gentamicin resistance enzyme AAC(6′)-APH(2″) by the lipid kinase inhibitor wortmannin","year":2001,"lang":"en","type":"article","venue":"Chemistry & Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"Wortmannin; Biochemistry; Kinase; Aminoglycoside; Enzyme; Biology; Phosphofructokinase 2; Active site; Phosphatidylinositol; Antibiotics","score_opus":0.005486912778865008,"score_gpt":0.21673375513519663,"score_spread":0.21124684235633162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015828459","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943159,0.0026046087,0.0000410096,0.0015704549,0.00029885166,0.00018919606,0.00018177312,0.000016389447,0.0007818213],"genre_scores_gemma":[0.9949194,0.0007559851,0.000105622734,0.0003539028,0.0005034617,0.000023397544,0.00022700924,0.00002440596,0.0030867802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985873,0.00007953634,0.0003413805,0.00051253446,0.000083786894,0.00039543095],"domain_scores_gemma":[0.99874634,0.000024719753,0.00025567404,0.00081124733,0.00010556916,0.000056454166],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016113924,0.00025017143,0.00023622783,0.000013663282,0.00015124466,0.000012819068,0.00064489874,0.0005847642,0.000058135807],"category_scores_gemma":[0.000119875585,0.0001631602,0.00014518228,0.00019599458,0.0006183593,0.0000023064067,0.00039272688,0.00027852663,0.0000055500664],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001687198,0.00005755417,0.0015505155,0.000019773506,0.000053177682,0.0000012599868,0.000026520982,0.0000024023182,0.99149626,0.000016655646,0.005479556,0.0011275782],"study_design_scores_gemma":[0.00033271263,0.000054092347,0.00028365362,0.00001812245,0.00002127034,0.000016697899,0.00005383457,0.0000033270007,0.7712867,0.000047647958,0.2277285,0.00015343116],"about_ca_topic_score_codex":0.000024481495,"about_ca_topic_score_gemma":0.00004018394,"teacher_disagreement_score":0.22224894,"about_ca_system_score_codex":0.00002476072,"about_ca_system_score_gemma":0.00007221923,"threshold_uncertainty_score":0.665348},"labels":[],"label_agreement":null},{"id":"W2016173081","doi":"10.1093/emboj/20.17.4901","title":"Probing the ATP‐binding site of P1 ParA: partition and repression have different requirements for ATP binding and hydrolysis","year":2001,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; ATP hydrolysis; Binding site; Adenosine triphosphate; Psychological repression; Biochemistry; Plasma protein binding; Hydrolysis; Enzyme; ATPase; Gene; Gene expression","score_opus":0.027985843398312654,"score_gpt":0.2751347403695714,"score_spread":0.24714889697125877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016173081","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974379,0.0006670988,0.0004891248,0.0010810405,0.000100681784,0.00018678703,0.000009619061,0.0000032258044,0.00002452224],"genre_scores_gemma":[0.9972319,0.002223226,0.00012608834,0.00004978218,0.00019961623,0.0000098777155,0.000015570697,0.000010516758,0.0001334274],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929744,0.0000552933,0.0002221866,0.00016127966,0.00008017813,0.00018363186],"domain_scores_gemma":[0.9995236,0.000017521506,0.00021560185,0.00017150072,0.000033949455,0.000037831687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035861135,0.00010290053,0.00012647615,0.00003241942,0.00030946423,0.00005080381,0.000107428205,0.000098505385,0.0000054314405],"category_scores_gemma":[0.00003389747,0.00005585955,0.00005526036,0.000034998127,0.00010094992,0.000004945504,0.00013860338,0.00011070912,3.3487925e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117767624,0.000017550128,0.0033246172,0.000008611347,0.00005895603,9.876093e-7,0.00019579944,0.000009537908,0.9917802,0.000010115871,0.00007572126,0.004400142],"study_design_scores_gemma":[0.0011321796,0.00057515653,0.007634504,0.00012816454,0.00015860873,0.00032359987,0.00032738672,0.00069806405,0.9792746,0.00046813916,0.009097517,0.00018210236],"about_ca_topic_score_codex":0.0000031242632,"about_ca_topic_score_gemma":0.0000069274424,"teacher_disagreement_score":0.012505616,"about_ca_system_score_codex":0.000008518089,"about_ca_system_score_gemma":0.000009008678,"threshold_uncertainty_score":0.23801799},"labels":[],"label_agreement":null},{"id":"W2017284605","doi":"10.1006/geno.2001.6528","title":"Recombinant Congenic Strains Derived from A/J and C57BL/6J: A Tool for Genetic Dissection of Complex Traits","year":2001,"lang":"en","type":"article","venue":"Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal General Hospital; McGill University","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Biology; Congenic; Genetics; Genome; Inbreeding; Inbred strain; Strain (injury); Backcrossing; Microsatellite; Gene mapping; Gene; Chromosome; Population; Allele","score_opus":0.016132499919053158,"score_gpt":0.23006548653905143,"score_spread":0.21393298661999827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017284605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944614,0.00038012644,0.0042958367,0.00014464122,0.00018127359,0.00032506557,0.00017757791,0.000008940963,0.000025137535],"genre_scores_gemma":[0.9884665,0.0013535322,0.009606201,0.00008260814,0.0001537844,0.000019698222,0.00022594516,0.000021782433,0.00006995158],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99920887,0.000019479998,0.00023803808,0.0003030521,0.000033693956,0.00019688458],"domain_scores_gemma":[0.99960756,0.000008318712,0.00009836339,0.00019064227,0.000051713298,0.000043388827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005485707,0.00013357527,0.00018625842,0.000029443703,0.00005475387,0.000015443993,0.00012401653,0.00023821568,0.000016664479],"category_scores_gemma":[0.000020080162,0.00013547816,0.00006794219,0.000038182137,0.000100262776,0.0000014199401,0.00006967849,0.000043919943,9.814405e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016417484,0.000039915856,0.0007623356,0.0000100246725,0.00006230979,8.3784636e-7,0.000034281667,0.000007986529,0.9683139,0.000030472162,0.000060306764,0.030513465],"study_design_scores_gemma":[0.002333896,0.0015949529,0.21717314,0.000010204777,0.00009734708,0.00006562286,0.00010460271,0.0004664901,0.70931387,0.0010658682,0.0673396,0.00043443084],"about_ca_topic_score_codex":0.00002108317,"about_ca_topic_score_gemma":0.00018264569,"teacher_disagreement_score":0.25900003,"about_ca_system_score_codex":0.000011132426,"about_ca_system_score_gemma":0.000042168213,"threshold_uncertainty_score":0.5524639},"labels":[],"label_agreement":null},{"id":"W2017521839","doi":"10.1016/j.str.2006.05.018","title":"Structural Polymorphism in Bacterial EspA Filaments Revealed by Cryo-EM and an Improved Approach to Helical Reconstruction","year":2006,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Biomedical Imaging and Bioengineering","keywords":"Cryo-electron microscopy; Protein filament; Crystallography; Twist; Cryo-electron tomography; Protein subunit; Polymer; Negative stain; Electron microscope; Biophysics; Physics; Molecular physics; Materials science; Chemistry; Optics; Biology; Geometry; Tomography; Mathematics; Nuclear magnetic resonance","score_opus":0.003747801099064939,"score_gpt":0.2080274566931113,"score_spread":0.20427965559404634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017521839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986199,0.0001295287,0.00003786249,0.00011970635,0.00040753928,0.00031749747,0.0002614238,0.00001807033,0.00008843341],"genre_scores_gemma":[0.99407965,0.000014265545,0.004181975,0.000118257696,0.00064778706,0.000011982453,0.00078324566,0.000025182731,0.00013766867],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866843,0.00005750865,0.00026661763,0.0005977976,0.000077775294,0.00033187954],"domain_scores_gemma":[0.99947083,0.000002038666,0.00008153827,0.00030976092,0.000034105677,0.00010171226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053490876,0.00023909526,0.00021802586,0.000071304785,0.00006794445,0.00006667971,0.00018260717,0.0005532699,0.000029037432],"category_scores_gemma":[0.00001638758,0.00021696936,0.000034591074,0.00011149211,0.00009198983,0.000007766617,0.00012463663,0.00016438038,5.968591e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019164891,0.000016503687,0.0014257268,0.00000820587,0.000010364364,6.2593415e-7,0.00001835136,0.0000035976545,0.985838,0.000052733252,0.0003629979,0.012071239],"study_design_scores_gemma":[0.003149526,0.0010448719,0.1081804,0.000016571455,0.000029948189,0.00029719356,0.00013947673,0.00029188694,0.8771252,0.001819926,0.0069364845,0.00096849195],"about_ca_topic_score_codex":0.00013213816,"about_ca_topic_score_gemma":0.0002729947,"teacher_disagreement_score":0.108712785,"about_ca_system_score_codex":0.00002148023,"about_ca_system_score_gemma":0.000028940603,"threshold_uncertainty_score":0.88477534},"labels":[],"label_agreement":null},{"id":"W2017798220","doi":"10.1186/1471-2148-13-262","title":"Evolution and dynamics of megaplasmids with genome sizes larger than 100 kb in the Bacillus cereus group","year":2013,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China; University of Alberta","keywords":"Plasmid; Biology; Genetics; Genome; Bacillus cereus; Cereus; Gene; Horizontal gene transfer; Phylogenetic tree; Bacteria","score_opus":0.0061375075179392145,"score_gpt":0.1998914988097297,"score_spread":0.1937539912917905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017798220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994741,0.0019123177,0.002035749,0.00045037307,0.00010356903,0.00035606083,0.000087767774,0.000010582167,0.00030256904],"genre_scores_gemma":[0.99686337,0.0002419547,0.0021387867,0.00007096494,0.0001175008,0.000065018416,0.0004114794,0.000012950455,0.00007797686],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988426,0.00016421142,0.0002523628,0.00037086906,0.00006851363,0.00030145686],"domain_scores_gemma":[0.99939376,0.000035010235,0.000109444976,0.0003452518,0.00007989038,0.000036627454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001758954,0.00017748616,0.00019720523,0.00008939849,0.00007090564,0.000009200032,0.0002703224,0.00041375138,0.000036610498],"category_scores_gemma":[0.000038984195,0.00011814851,0.00004752939,0.00016226638,0.0005122058,0.0000062119166,0.00016384598,0.00012465946,0.000006705182],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002136489,0.00021262371,0.26635003,0.00003333019,0.00005266472,0.000001319567,0.000033021195,0.00004503661,0.72060585,0.011746275,0.00021988981,0.0004863066],"study_design_scores_gemma":[0.0011968525,0.0027212647,0.9815691,0.000012756474,0.000025291996,0.00016754364,0.0004176734,0.0010215839,0.0020521218,0.004446584,0.006004226,0.00036501078],"about_ca_topic_score_codex":0.0003128969,"about_ca_topic_score_gemma":0.0013656816,"teacher_disagreement_score":0.7185537,"about_ca_system_score_codex":0.000028013546,"about_ca_system_score_gemma":0.00007253401,"threshold_uncertainty_score":0.48179567},"labels":[],"label_agreement":null},{"id":"W2018016153","doi":"10.1016/j.chembiol.2008.10.007","title":"Known Bioactive Small Molecules Probe the Function of a Widely Conserved but Enigmatic Bacterial ATPase, YjeE","year":2008,"lang":"en","type":"article","venue":"Chemistry & Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; University of Calgary","keywords":"DNA gyrase; Biology; Norfloxacin; Escherichia coli; Activator (genetics); Cell biology; Function (biology); ATPase; Signal transduction; Gene; Biochemistry; Mutant; Bacteria; Genetics; Enzyme","score_opus":0.01515593141332421,"score_gpt":0.20755046570969338,"score_spread":0.19239453429636916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018016153","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968265,0.0006911655,0.0008748688,0.00040656724,0.0002887313,0.00027029932,0.00011207157,0.000029125616,0.0005006447],"genre_scores_gemma":[0.9974798,0.00038420805,0.00065912283,0.00013492772,0.00041083357,0.000058257334,0.0004774816,0.000026572214,0.00036880406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985576,0.00009591238,0.0004172388,0.0005050887,0.000062618135,0.00036151824],"domain_scores_gemma":[0.99882716,0.00003274598,0.0002831312,0.00060702243,0.00017878527,0.00007113578],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013442512,0.000284283,0.00032946226,0.000025990092,0.00013571169,0.000010088393,0.00042668494,0.00069892796,0.000083351304],"category_scores_gemma":[0.00012751593,0.00021311645,0.00016468526,0.00011908248,0.0009693765,0.0000022973268,0.00025204875,0.0001877293,0.000008825636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042429657,0.00009570494,0.00063600816,0.00004301938,0.00017077074,0.0000032950907,0.000022827418,0.0000017979285,0.99737465,0.000059629776,0.00025607596,0.0009119283],"study_design_scores_gemma":[0.0007439637,0.00046257768,0.0019748935,0.0000122058145,0.00006033701,0.000101891645,0.00006387491,0.000017144657,0.977458,0.00019784058,0.01866419,0.00024306381],"about_ca_topic_score_codex":0.00005461511,"about_ca_topic_score_gemma":0.000023177665,"teacher_disagreement_score":0.01991663,"about_ca_system_score_codex":0.000016163485,"about_ca_system_score_gemma":0.00019849325,"threshold_uncertainty_score":0.8690637},"labels":[],"label_agreement":null},{"id":"W2018161141","doi":"10.1021/jm301483h","title":"Structural–Functional Studies of <i>Burkholderia cenocepacia</i> <scp>d</scp>-Glycero-β-<scp>d</scp>-manno-heptose 7-Phosphate Kinase (HldA) and Characterization of Inhibitors with Antibiotic Adjuvant and Antivirulence Properties","year":2012,"lang":"en","type":"article","venue":"Journal of Medicinal Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; McMaster University","funders":"National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Ontario Ministry of Economic Development and Innovation; Cystic Fibrosis Canada; U.S. Department of Energy","keywords":"Chemistry; Burkholderia cenocepacia; Adjuvant; Antibiotics; Kinase; Biochemistry; Stereochemistry; Combinatorial chemistry","score_opus":0.014006185365007008,"score_gpt":0.21928694883821354,"score_spread":0.20528076347320653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018161141","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873398,0.012077315,0.000027773487,0.00007322144,0.0003012803,0.00011581216,0.000029781158,0.0000054441143,0.000029587345],"genre_scores_gemma":[0.99367833,0.005370858,0.00019839924,0.00004498629,0.00054587907,0.0000014523328,0.00002630164,0.000022961369,0.00011085915],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984927,0.000039017887,0.00059147604,0.00024309696,0.00032979317,0.00030390182],"domain_scores_gemma":[0.99832904,0.000046764133,0.00088354514,0.00018210632,0.00039685584,0.00016166821],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033118937,0.000275611,0.00053070125,0.0000634809,0.000072513,0.000014843945,0.00014436776,0.00027888996,0.0000024318438],"category_scores_gemma":[0.0004013486,0.00019270292,0.00006597099,0.00012789649,0.0007618379,0.000033178334,0.00014475713,0.00023928627,1.523185e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012044928,0.00007422241,0.017225185,0.00062770507,0.00020573336,0.000007964099,0.0004113778,0.0000024361336,0.98038435,0.0000032640614,0.00015805206,0.0007792787],"study_design_scores_gemma":[0.0010202143,0.00080802763,0.0279798,0.00046865482,0.00016217702,0.00045108274,0.0015386388,0.000007812439,0.9667299,0.000011528132,0.00075052085,0.00007168448],"about_ca_topic_score_codex":0.0000036447127,"about_ca_topic_score_gemma":8.8510313e-7,"teacher_disagreement_score":0.013654473,"about_ca_system_score_codex":0.000016020784,"about_ca_system_score_gemma":0.00010064218,"threshold_uncertainty_score":0.7858197},"labels":[],"label_agreement":null},{"id":"W2018295920","doi":"10.1016/j.nbt.2010.06.012","title":"Reconstitution of the Cpx signaling system from cell-free synthesized proteins","year":2010,"lang":"en","type":"article","venue":"New Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Agence Nationale de la Recherche; Institut national de la recherche scientifique","keywords":"Membrane; Integral membrane protein; Cell envelope; Membrane protein; Escherichia coli; Biochemistry; Histidine kinase; Cell biology; Cell membrane; Biology; Chemistry; Cell; Histidine; Enzyme; Gene","score_opus":0.0048611019460390046,"score_gpt":0.1814567229785113,"score_spread":0.17659562103247228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018295920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99306655,0.00023749049,0.002514795,0.0020715387,0.0010176207,0.00040951848,0.00007005288,0.00008831688,0.0005241283],"genre_scores_gemma":[0.98876756,0.000050994968,0.010651649,0.000052870597,0.00028695495,0.000017069895,0.000018928704,0.000020467112,0.00013348582],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883235,0.000044848664,0.00032655857,0.00043093957,0.00009860011,0.00026672968],"domain_scores_gemma":[0.99825996,0.0000137940215,0.00024510905,0.0013774886,0.000054536835,0.000049117516],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00013285661,0.00019051047,0.00024173646,0.00007415238,0.0000972742,0.000012947949,0.0010238545,0.001571129,0.000035441262],"category_scores_gemma":[0.00020514705,0.00014375531,0.00012557376,0.00018165067,0.00046903137,0.000002228547,0.0004962724,0.0004133514,0.000011658157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049950366,0.000033925695,0.0001686809,0.000014718258,0.000029600014,0.0000010939863,0.0000056929675,0.000002007086,0.9903474,0.0026408995,0.00028958518,0.0064164377],"study_design_scores_gemma":[0.0006139267,0.00014590834,0.0001751087,0.00002485717,0.00003125856,0.000024338107,0.000041772735,0.000014022244,0.96445835,0.00053794653,0.033774357,0.00015816012],"about_ca_topic_score_codex":0.00027134875,"about_ca_topic_score_gemma":0.0003423919,"teacher_disagreement_score":0.03348477,"about_ca_system_score_codex":0.000012730126,"about_ca_system_score_gemma":0.00019025673,"threshold_uncertainty_score":0.99972504},"labels":[],"label_agreement":null},{"id":"W2018913185","doi":"10.1016/j.resmic.2004.02.005","title":"Influence of environmental cues on transcriptional regulation of foo and clp coding for F1651 and CS31A adhesins in Escherichia coli","year":2004,"lang":"en","type":"article","venue":"Research in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Bacterial adhesin; Escherichia coli; Enterobacteriaceae; Genetics; Microbiology; Gene; Coding (social sciences); Coding region","score_opus":0.022506574808907914,"score_gpt":0.28893430375809187,"score_spread":0.266427728949184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018913185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99891436,0.00046547517,0.000019960475,0.00021984208,0.000013371612,0.00026006406,0.000098157,9.988134e-7,0.000007751997],"genre_scores_gemma":[0.9982717,0.00093429367,0.0006738034,0.000020353737,0.000015219272,0.000014261004,0.000057536887,0.0000058875967,0.000006969886],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930054,0.00007083251,0.00019018743,0.00022260493,0.000030471867,0.00018538226],"domain_scores_gemma":[0.9997933,0.000029211293,0.00004000477,0.00009521623,0.000021791762,0.00002048896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033134833,0.00006760346,0.00013453026,0.0001281941,0.000022657268,0.0000027788312,0.00007677056,0.00024513793,0.00000173777],"category_scores_gemma":[0.0000348758,0.000066331086,0.000017107077,0.00006687108,0.00046881297,0.000002382025,0.000057858946,0.00010071531,2.0433434e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003006146,0.00007920773,0.0030498854,0.00003775404,0.000007889087,3.682929e-7,0.00004260094,0.00016220448,0.994845,0.0010083995,0.0000027914898,0.00046333522],"study_design_scores_gemma":[0.0009787151,0.0010209853,0.120972544,0.000035933106,0.0000015540697,0.0000054306097,0.000038203576,0.00000970307,0.8754177,0.00076437055,0.0006978045,0.000057072997],"about_ca_topic_score_codex":0.000036451573,"about_ca_topic_score_gemma":0.00012704602,"teacher_disagreement_score":0.119427264,"about_ca_system_score_codex":0.000021642014,"about_ca_system_score_gemma":0.00004115556,"threshold_uncertainty_score":0.27049032},"labels":[],"label_agreement":null},{"id":"W2019082498","doi":"10.1016/j.str.2014.02.010","title":"Coordinated Rearrangements between Cytoplasmic and Periplasmic Domains of the Membrane Protein Complex ExbB-ExbD of Escherichia coli","year":2014,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"","keywords":"Periplasmic space; Biology; Bacterial outer membrane; Biophysics; Protein subunit; Negative stain; Crystallography; Cell envelope; Cytoplasm; Escherichia coli; Biochemistry; Chemistry; Electron microscope","score_opus":0.006329806470980065,"score_gpt":0.21032705782378666,"score_spread":0.2039972513528066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019082498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99898183,0.000048103764,0.00004468603,0.00018704652,0.00008047804,0.00030538588,0.00016472819,0.0000060129255,0.0001817231],"genre_scores_gemma":[0.99879825,0.000015330814,0.00089657295,0.000042584477,0.00007271788,0.000003988326,0.00006609728,0.000015163636,0.00008928928],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923897,0.000072704075,0.00021279561,0.00022586217,0.00008861066,0.0001610705],"domain_scores_gemma":[0.99936765,0.0000051226957,0.00017277259,0.00035720243,0.000062543855,0.000034716126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007434721,0.00014231465,0.00022848355,0.000026118832,0.000056161818,0.0000073079855,0.00025549135,0.00028155503,0.000026804906],"category_scores_gemma":[0.000038227565,0.000101912454,0.000049976145,0.00010715853,0.0002976523,0.0000014264207,0.00019805763,0.00010633917,2.6759574e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049453713,0.000008219991,0.0042295386,0.000057449113,0.000055147444,8.348168e-8,0.000021692867,0.0000038543967,0.9945912,0.00015099507,0.00006956084,0.0007628045],"study_design_scores_gemma":[0.0006511834,0.00024746938,0.05912721,0.00001673423,0.000029339393,0.0000027327605,0.000019684981,0.000018738263,0.9316358,0.00030108288,0.007841267,0.00010873091],"about_ca_topic_score_codex":0.000026022917,"about_ca_topic_score_gemma":0.000046224402,"teacher_disagreement_score":0.06295537,"about_ca_system_score_codex":0.0000045347124,"about_ca_system_score_gemma":0.0000267761,"threshold_uncertainty_score":0.41558692},"labels":[],"label_agreement":null},{"id":"W2019102787","doi":"10.1111/j.1462-2920.2010.02182.x","title":"Biosynthesis of uronamide sugars in <i>Pseudomonas aeruginosa</i> O6 and <i>Escherichia coli</i> O121 O antigens","year":2010,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; National Research Council Canada; University of Guelph","funders":"Canada Research Chairs; Public Health Agency of Canada; Canadian Institutes of Health Research; Ontario Innovation Trust","keywords":"Biology; Escherichia coli; Biosynthesis; Mutant; Bacterial outer membrane; Microbiology; Glutamine; Biochemistry; Antigen; Biofilm; Pseudomonas aeruginosa; Bacteria; Gene; Amino acid; Genetics","score_opus":0.002315452467226349,"score_gpt":0.17045031525944954,"score_spread":0.1681348627922232,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019102787","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985168,0.00051817496,0.00001028024,0.00021241076,0.00023866004,0.00018745122,0.00016149222,0.000007249405,0.00014750002],"genre_scores_gemma":[0.9966115,0.0009847174,0.0017805154,0.00030845893,0.000060566188,0.0000088431825,0.0001575476,0.000023911747,0.000063935244],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884075,0.000059922924,0.00029082265,0.0004583925,0.000029007817,0.0003210842],"domain_scores_gemma":[0.9994824,0.000016005612,0.00010849427,0.00033065243,0.000004603728,0.00005784542],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012441645,0.00021160253,0.00026094104,0.00006357598,0.00003805894,0.000005785518,0.00021709314,0.0005257286,0.000065362954],"category_scores_gemma":[0.000017671642,0.00020843509,0.00006336152,0.000055198307,0.000704398,0.0000025835423,0.00029001592,0.00020854655,0.000011918507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006565231,0.000120656645,0.029740157,0.000007121567,0.000025280557,0.0000036486106,0.000017042521,7.5540345e-7,0.9677033,0.000030380545,0.00008529082,0.002200702],"study_design_scores_gemma":[0.0005001741,0.00025504813,0.041536417,0.000004159308,0.000011801931,0.00006319307,0.00003591496,0.0000021254898,0.9234397,0.000035572237,0.03390452,0.00021141682],"about_ca_topic_score_codex":0.000029271234,"about_ca_topic_score_gemma":0.000228351,"teacher_disagreement_score":0.044263653,"about_ca_system_score_codex":0.000008796864,"about_ca_system_score_gemma":0.000020135158,"threshold_uncertainty_score":0.8499736},"labels":[],"label_agreement":null},{"id":"W2019341121","doi":"10.1111/j.1365-2958.2007.05913.x","title":"Systematic deletion analyses of the <i>fla</i> genes in the flagella operon identify several genes essential for proper assembly and function of flagella in the archaeon, <i>Methanococcus maripaludis</i>","year":2007,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Core Research for Evolutional Science and Technology; Natural Sciences and Engineering Research Council of Canada; Fundação Luso-Americana para o Desenvolvimento","keywords":"Flagellum; Flagellin; Methanococcus; Operon; Biology; Gene; Mutant; Genetics; Sulfolobus acidocaldarius; Escherichia coli; Archaea","score_opus":0.011539004441171266,"score_gpt":0.2708257669029024,"score_spread":0.2592867624617311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019341121","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9880951,0.0052104164,0.004950688,0.00026036237,0.00019469489,0.0012371204,0.000025206722,0.000002825144,0.000023602703],"genre_scores_gemma":[0.99885005,0.00031690375,0.0002646124,0.00033332244,0.000057363846,0.00006167282,0.00007965228,0.000015842994,0.000020566433],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980466,0.0006154062,0.00059372815,0.00035960213,0.00008099127,0.00030369335],"domain_scores_gemma":[0.9990468,0.000060728777,0.00027000334,0.0005028113,0.00010475164,0.0000148813615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013902929,0.00020354385,0.00034069762,0.00010324584,0.00006267701,0.000017034052,0.00051836,0.0003693689,0.0000014487565],"category_scores_gemma":[0.000076184704,0.000110525856,0.00016021176,0.00025099545,0.00033575972,0.0000035148712,0.00019631306,0.00013146496,4.19966e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016759855,0.00006957027,0.0004914205,0.0005073226,0.0000782763,0.000003201195,0.00011014841,0.00006645986,0.99799174,0.00006606582,0.000039628663,0.00040857747],"study_design_scores_gemma":[0.00059896713,0.00032365177,0.0024994076,0.00009237897,0.00012718729,0.000072258634,0.00028282552,0.000021941427,0.9950134,0.00008069244,0.00075462594,0.00013267396],"about_ca_topic_score_codex":0.00009904483,"about_ca_topic_score_gemma":0.00056810846,"teacher_disagreement_score":0.010754979,"about_ca_system_score_codex":0.000009969323,"about_ca_system_score_gemma":0.00004153735,"threshold_uncertainty_score":0.45071137},"labels":[],"label_agreement":null},{"id":"W2019775362","doi":"10.1139/w08-111","title":"In vivo associations of <i>Escherichia coli</i> NarJ with a peptide of the first 50 residues of nitrate reductase catalytic subunit NarG","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Medical School, University of Michigan; University of Michigan","keywords":"Bimolecular fluorescence complementation; Yellow fluorescent protein; Complementation; Förster resonance energy transfer; Escherichia coli; Protein subunit; Mutant; Biochemistry; Peptide; Biology; N-terminus; Protein folding; Nitrate reductase; Molecular biology; Chemistry; Enzyme; Biophysics; Fluorescence; Peptide sequence; Gene","score_opus":0.006204656057780597,"score_gpt":0.19476867531127606,"score_spread":0.18856401925349547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019775362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99676526,0.00070190825,0.000003049326,0.001897929,0.00010921536,0.00010092409,0.00029717365,5.47664e-7,0.0001240127],"genre_scores_gemma":[0.99920225,0.00008042376,0.00027074196,0.00030065005,0.000046318633,6.4209496e-7,0.000018099347,0.000007871801,0.0000729866],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991071,0.00006310438,0.0004653785,0.000116399024,0.000031121195,0.00021689366],"domain_scores_gemma":[0.998896,0.000010275077,0.00055828824,0.00022619088,0.00023651011,0.000072750096],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022226851,0.00011113511,0.00030527255,0.00013478464,0.000038166047,0.0000035649705,0.00035696547,0.0002587954,0.000015487272],"category_scores_gemma":[0.000061802195,0.00008333164,0.00008969899,0.00021020565,0.0003392263,0.0000034509694,0.00001978239,0.00016319107,2.2513709e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006685584,0.000036418212,0.007682831,0.0000107063415,0.000060221864,0.0000063764164,0.0000948682,0.000031496464,0.9893879,0.000052610623,0.002547205,0.000022489236],"study_design_scores_gemma":[0.0005529938,0.000918057,0.01786393,0.000056544246,0.00003727113,0.00012330731,0.00008679314,3.1258477e-7,0.969519,0.00007949991,0.01067258,0.00008968917],"about_ca_topic_score_codex":0.001957082,"about_ca_topic_score_gemma":0.068654194,"teacher_disagreement_score":0.06669711,"about_ca_system_score_codex":0.000035000376,"about_ca_system_score_gemma":0.0010000729,"threshold_uncertainty_score":0.9483404},"labels":[],"label_agreement":null},{"id":"W2019971451","doi":"10.1016/j.micinf.2006.01.022","title":"Transcriptional modulation of some Staphylococcus aureus iron-regulated genes during growth in vitro and in a tissue cage model in vivo","year":2006,"lang":"en","type":"article","venue":"Microbes and Infection","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Montréal; Université de Sherbrooke","funders":"","keywords":"In vivo; Biology; Gene; In vitro; Gene expression; Staphylococcus aureus; Molecular biology; Regulation of gene expression; Microbiology; Cell biology; Bacteria; Biochemistry; Genetics","score_opus":0.003575010144720064,"score_gpt":0.18921130256148957,"score_spread":0.18563629241676952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019971451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99877286,0.00085238216,0.00013430598,0.000044821605,0.000029826464,0.00013004708,0.000021490034,0.000004098386,0.000010148625],"genre_scores_gemma":[0.998957,0.0007255374,0.0001834557,0.0000064743576,0.00003601681,0.0000077375435,0.000044469598,0.0000074022,0.00003194463],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994501,0.000019393685,0.00019264655,0.00019358826,0.00002610959,0.00011818919],"domain_scores_gemma":[0.99987733,0.0000013010291,0.000038896014,0.00005442907,0.000016676948,0.000011337933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005574237,0.00008991782,0.000112026275,0.00015293824,0.000018615669,0.000008520787,0.000021849599,0.00020488507,0.0000018979488],"category_scores_gemma":[0.0000022979948,0.00009434733,0.000015242383,0.00008448569,0.000046155877,0.000008464146,0.000024376544,0.000052745032,7.321189e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106801075,0.000064964515,0.0101283,0.0000415927,0.0000023400369,7.034889e-7,0.000017655624,0.0032560765,0.9857665,0.000036219357,0.0000025321458,0.00057636085],"study_design_scores_gemma":[0.0006441599,0.000050591665,0.20435424,0.000010964147,0.0000023385876,0.0000031218633,0.00000311992,0.002802425,0.79173285,0.00023455602,0.000080634214,0.000081002945],"about_ca_topic_score_codex":0.001123672,"about_ca_topic_score_gemma":0.0015573968,"teacher_disagreement_score":0.19422594,"about_ca_system_score_codex":0.00001531774,"about_ca_system_score_gemma":0.00001026733,"threshold_uncertainty_score":0.38473725},"labels":[],"label_agreement":null},{"id":"W2020040257","doi":"10.1371/journal.pone.0006096","title":"Bacterial Ortholog of Mammalian Translocator Protein (TSPO) with Virulence Regulating Activity","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Institute of Environmental Health Sciences; National Institutes of Health; Institut National de la Recherche Agronomique","keywords":"Translocator protein; Porin; Biology; Bacterial outer membrane; Pseudomonas fluorescens; Mutant; Cell biology; Biochemistry; Bacteria; Gene; Genetics; Escherichia coli; Inflammation","score_opus":0.01526468125797689,"score_gpt":0.20443573217386232,"score_spread":0.18917105091588543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020040257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879694,0.000044778913,0.0001557203,0.0004650411,0.000017135231,0.0003285283,0.000023891149,0.000019904719,0.0001480812],"genre_scores_gemma":[0.99206716,0.000020110228,0.0075220363,0.00003709082,0.00014723535,0.000014413399,0.00002744456,0.000014360468,0.00015015458],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991211,0.00004074855,0.00017017445,0.00031464518,0.00012886673,0.00022443806],"domain_scores_gemma":[0.99940956,0.0000022257145,0.00010333252,0.0003610926,0.00007299654,0.00005082574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009256091,0.00014744796,0.00022217658,0.000034519602,0.00004120195,0.000011102949,0.00017773178,0.00026015783,0.000026043517],"category_scores_gemma":[0.000025911297,0.00012847663,0.00004042379,0.000094882584,0.00012034274,0.0000036609313,0.000032936437,0.00009771732,0.000002002055],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060999376,0.0005111038,0.00031303335,0.000034730463,0.000051627194,0.0000019686338,0.0000122198835,0.0000013195553,0.99338084,0.000049113787,0.000002656277,0.005031407],"study_design_scores_gemma":[0.0005302166,0.0019703486,0.008180804,0.00006583356,0.000035678113,0.000004144083,0.0000049203645,0.000010596924,0.9888764,0.00003443194,0.00011743982,0.00016919817],"about_ca_topic_score_codex":0.000011345848,"about_ca_topic_score_gemma":0.000034259327,"teacher_disagreement_score":0.00786777,"about_ca_system_score_codex":0.000005818849,"about_ca_system_score_gemma":0.00005149231,"threshold_uncertainty_score":0.5239125},"labels":[],"label_agreement":null},{"id":"W2021345678","doi":"10.1074/jbc.m809068200","title":"Biochemical and Structural Analysis of Bacterial O-antigen Chain Length Regulator Proteins Reveals a Conserved Quaternary Structure","year":2009,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Protein quaternary structure; Regulator; Antigen; Protein structure; Biology; Cell biology; Chemistry; Biochemistry; Computational biology; Genetics; Gene; Protein subunit","score_opus":0.009930860637197664,"score_gpt":0.2357299023764795,"score_spread":0.22579904173928184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021345678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99838805,0.0009700511,0.000031925123,0.00028736138,0.00007217526,0.00010162346,0.00012584888,0.0000061625437,0.000016824699],"genre_scores_gemma":[0.9975021,0.0003085909,0.0015520053,0.000080523714,0.00039330267,8.2347225e-7,0.00013400863,0.0000074362806,0.000021200769],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985665,0.00006387448,0.0006671026,0.00031726868,0.0001388117,0.00024644003],"domain_scores_gemma":[0.9987878,0.0000155409,0.00060517516,0.00027615254,0.00017406685,0.00014121497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000202081,0.00023438594,0.0006176831,0.00006774946,0.000039355073,0.000021791977,0.0003366761,0.0007350734,0.00009905902],"category_scores_gemma":[0.00019988793,0.00016376736,0.00027021274,0.00020049018,0.00027535215,0.000004301406,0.000091527196,0.00022754075,1.0465575e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060823717,0.000042969747,0.0068151713,0.00001670771,0.000460862,0.000009508559,0.000011752744,0.000003686231,0.99121904,0.000009466875,0.0000879783,0.0007146372],"study_design_scores_gemma":[0.0005938564,0.00074692286,0.04825641,0.000018253517,0.00015720911,0.0001376796,0.000022984046,0.00002762136,0.9491494,0.00026426147,0.00043224692,0.00019314203],"about_ca_topic_score_codex":0.0000027320318,"about_ca_topic_score_gemma":9.1629414e-7,"teacher_disagreement_score":0.04206961,"about_ca_system_score_codex":0.000013521704,"about_ca_system_score_gemma":0.000055772165,"threshold_uncertainty_score":0.6678239},"labels":[],"label_agreement":null},{"id":"W2021432931","doi":"10.1371/journal.pone.0078742","title":"Diversity and Evolution of Bacterial Twin Arginine Translocase Protein, TatC, Reveals a Protein Secretion System That Is Evolving to Fit Its Environmental Niche","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Twin-arginine translocation pathway; Biology; Translocase; Conserved sequence; Genetics; Gene; Peptide sequence; Signal peptide","score_opus":0.01870073695386881,"score_gpt":0.18247932865329622,"score_spread":0.1637785916994274,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021432931","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975062,0.000364765,0.00013138629,0.00025446102,0.000026032203,0.0015610922,0.000121260455,0.000016772125,0.00001804717],"genre_scores_gemma":[0.9983116,0.000032502292,0.001107416,0.00003172664,0.00010685174,0.00011070117,0.00004734879,0.000015842901,0.0002360054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999007,0.000060408387,0.00020116637,0.00035766413,0.00016199052,0.00021180251],"domain_scores_gemma":[0.99949455,0.0000027061105,0.00011188629,0.00024597018,0.000050193164,0.0000946705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000113323644,0.00015745913,0.00022058649,0.000050979314,0.0001720871,0.000014065239,0.00013930611,0.00027920186,0.00011905256],"category_scores_gemma":[0.000024981351,0.0001568737,0.000043292694,0.00005373653,0.00006211814,0.000009748014,0.00048739143,0.00007829655,0.000013106771],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001251646,0.00020070432,0.0020114568,0.00019164376,0.000090569316,0.0000010250081,0.00012938841,2.9113755e-7,0.997026,0.000009177293,0.000035366593,0.0001792138],"study_design_scores_gemma":[0.00055273855,0.0008182319,0.009975754,0.00017331429,0.00006253352,0.000004098409,0.000111906586,0.00012111972,0.9879185,0.000013954592,0.000066567474,0.00018126942],"about_ca_topic_score_codex":0.00006603082,"about_ca_topic_score_gemma":0.0000074797167,"teacher_disagreement_score":0.009107487,"about_ca_system_score_codex":0.00004455248,"about_ca_system_score_gemma":0.000015556052,"threshold_uncertainty_score":0.6397124},"labels":[],"label_agreement":null},{"id":"W2021439946","doi":"10.1128/jb.01326-07","title":"Galactosyl Transferases in Mycobacterial Cell Wall Synthesis","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Glycomics Centre; University of Alberta","funders":"Fogarty International Center; National Institutes of Health; Alberta Glycomics Centre; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; European Commission; Vedecká Grantová Agentúra MŠVVaŠ SR a SAV; Agentúra na Podporu Výskumu a Vývoja","keywords":"Biology; Cell wall; Bacterial protein; Microbiology; Cell; Biochemistry; Computational biology; Bacteria; Genetics","score_opus":0.007191734301000296,"score_gpt":0.22120913503159553,"score_spread":0.21401740073059525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021439946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977687,0.00028132563,0.0003520033,0.00030046588,0.00088128913,0.00008548847,0.000010635342,0.000004767632,0.00031535348],"genre_scores_gemma":[0.9974139,0.0006551774,0.00096564495,0.00019086999,0.00069866684,0.0000020996295,0.000011581164,0.000022672868,0.000039401224],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99844646,0.000106427855,0.0007391883,0.00022709857,0.000086575375,0.00039425888],"domain_scores_gemma":[0.9992261,0.000057212812,0.000279444,0.0002214867,0.00010796738,0.000107803215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069769926,0.00019446382,0.00040227067,0.00023021152,0.000027773707,0.000016588412,0.00033489827,0.00055237097,0.000096216754],"category_scores_gemma":[0.00012603088,0.0001670172,0.00016822673,0.00010854072,0.00012353498,0.0000062512327,0.000059531598,0.00024595196,0.0000061982428],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010767756,0.00013973744,0.0070612086,0.000012324042,0.00003306055,0.00005828782,0.000026233127,0.000003526475,0.9875461,0.000016686627,0.00012316371,0.003902903],"study_design_scores_gemma":[0.0009580193,0.0012157934,0.07608198,0.000019332867,0.000024810148,0.00031184492,0.000039265797,0.0000010462197,0.884205,0.000046004792,0.03690132,0.00019558921],"about_ca_topic_score_codex":0.000016162094,"about_ca_topic_score_gemma":0.00011259351,"teacher_disagreement_score":0.103341095,"about_ca_system_score_codex":0.000028508126,"about_ca_system_score_gemma":0.000112609996,"threshold_uncertainty_score":0.6810764},"labels":[],"label_agreement":null},{"id":"W2021862499","doi":"10.1074/jbc.m100659200","title":"Structure of a Pilin Monomer fromPseudomonas aeruginosa","year":2001,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Heritage Medical Research Clinic; University of Alberta","funders":"","keywords":"Pilin; Monomer; Pilus; Materials science; Chemistry; Composite material; Polymer","score_opus":0.011562057117429888,"score_gpt":0.22989353018317926,"score_spread":0.21833147306574938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021862499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980893,0.0011633175,0.00009354262,0.00017325724,0.00012422347,0.000040249735,0.000029984578,0.0000040233285,0.0002820597],"genre_scores_gemma":[0.99698764,0.0010728466,0.0012090027,0.000074368276,0.0005329409,4.8603687e-7,0.000027776734,0.00000804438,0.00008689495],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990129,0.000026906759,0.00046505904,0.00019017606,0.00011054192,0.00019445506],"domain_scores_gemma":[0.99910337,0.000011969536,0.00039182804,0.00022196247,0.00017962167,0.00009126734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011292891,0.0001551471,0.00030556726,0.000023783077,0.000023122011,0.000008145684,0.00035131126,0.00061451003,0.00023828431],"category_scores_gemma":[0.00012605327,0.000107889326,0.00018207004,0.00008909053,0.00018888622,0.0000020467912,0.000118718184,0.0002421756,0.0000011638283],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028540244,0.00007875738,0.0056761513,0.000010260205,0.00006303702,0.000015658887,0.0000039424053,0.00001024357,0.991726,0.000005306333,0.0002736256,0.0018516616],"study_design_scores_gemma":[0.0005027972,0.00045471362,0.0038030555,0.000012019031,0.000015668424,0.0003770056,0.000030071273,0.000002974783,0.9723453,0.00026088508,0.0220666,0.00012892445],"about_ca_topic_score_codex":0.0000023335524,"about_ca_topic_score_gemma":8.557054e-7,"teacher_disagreement_score":0.021792974,"about_ca_system_score_codex":0.000009701291,"about_ca_system_score_gemma":0.000058478436,"threshold_uncertainty_score":0.47396642},"labels":[],"label_agreement":null},{"id":"W2021870152","doi":"10.1074/jbc.m100905200","title":"Roles of Glucitol in the GutR-mediated Transcription Activation Process in Bacillus subtilis","year":2001,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Transcription (linguistics); Operon; Activator (genetics); Binding site; Bacillus subtilis; Mutant; Biology; Transcription factor; Molecular biology; Cell biology; Biochemistry; Chemistry; Gene; Genetics; Bacteria","score_opus":0.015540417485831032,"score_gpt":0.2436280968862714,"score_spread":0.22808767940044036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021870152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988212,0.00039629935,0.000038337545,0.0004902394,0.000031800806,0.0000700811,0.00000627313,0.0000019337465,0.0001438231],"genre_scores_gemma":[0.9987341,0.00095760747,0.000047414884,0.000076715296,0.00013586416,0.000003916314,0.00003355352,0.000003982825,0.000006824013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912864,0.000055379205,0.00042604655,0.00013681721,0.000104841645,0.00014826338],"domain_scores_gemma":[0.99950904,0.0000203119,0.00023564135,0.00011801198,0.00009069503,0.000026315425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003518064,0.00010368282,0.00018981448,0.000036556266,0.000012922901,0.000007322742,0.00028626298,0.00041681755,0.000022669465],"category_scores_gemma":[0.00019679772,0.00006392527,0.000077204095,0.00019243268,0.00010377147,0.000004265811,0.000019509518,0.00022520396,2.8476236e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047910382,0.00016803817,0.00766027,0.00001619863,0.000009203793,0.000008147368,0.000050455503,0.000026238873,0.98976326,0.0000016017183,0.000015086078,0.0018023731],"study_design_scores_gemma":[0.00072801416,0.0003955256,0.019041434,0.000031136376,0.0000044277613,0.00007867654,0.00038173448,0.000013888927,0.97648233,0.00013664152,0.0026234004,0.0000827708],"about_ca_topic_score_codex":0.0000030592619,"about_ca_topic_score_gemma":0.00001150672,"teacher_disagreement_score":0.013280933,"about_ca_system_score_codex":0.000013750803,"about_ca_system_score_gemma":0.000044172368,"threshold_uncertainty_score":0.32148787},"labels":[],"label_agreement":null},{"id":"W2022038541","doi":"10.1101/gad.244517.114","title":"How to build segregation complexes in bacteria: Use bridges","year":2014,"lang":"en","type":"letter","venue":"Genes & Development","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Filamentation; DNA; Centromere; Partition (number theory); Genetics; Gene; Computational biology; Cell biology; Chromosome; Combinatorics","score_opus":0.01787315025518192,"score_gpt":0.22254831036952694,"score_spread":0.204675160114345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022038541","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.741002,0.00037422898,0.0010560286,0.25588244,0.00092649803,0.0006339452,0.000061759405,0.000038301707,0.00002476715],"genre_scores_gemma":[0.16466847,0.0016719023,0.09032748,0.70636666,0.008327067,0.00062855467,0.015298158,0.00039829852,0.01231344],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99793285,0.00008670553,0.0003881471,0.00083176227,0.00020128793,0.00055925775],"domain_scores_gemma":[0.99906164,0.000012168225,0.00016285133,0.00057725556,0.00011497125,0.000071093506],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00014715703,0.0004525886,0.00040984192,0.00021219379,0.000070997645,0.00020684296,0.00046363793,0.0013456577,0.00001325999],"category_scores_gemma":[0.00004476984,0.00044418863,0.00007595446,0.00012409847,0.000059951828,0.000004078156,0.00041323304,0.000336549,0.00003418675],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030256859,0.000021078515,0.00092361495,0.00006351839,0.00007028994,0.000025394163,0.000028338802,0.000007797795,0.69077444,0.000008161912,0.28596476,0.022082387],"study_design_scores_gemma":[0.00017198201,0.000083299594,0.0056357523,0.00003561476,0.000008424214,0.000017649381,0.0000044578364,0.0000011547742,0.31204754,0.000009914124,0.6815725,0.0004117087],"about_ca_topic_score_codex":0.000042130127,"about_ca_topic_score_gemma":0.00030452,"teacher_disagreement_score":0.5763336,"about_ca_system_score_codex":0.000071027214,"about_ca_system_score_gemma":0.00017395092,"threshold_uncertainty_score":0.9999508},"labels":[],"label_agreement":null},{"id":"W2022644503","doi":"10.1074/jbc.m808305200","title":"Structure, Binding, and Activity of Syd, a SecY-interacting Protein","year":2009,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Heterotrimeric G protein; Translocon; Protein subunit; Biogenesis; Cytosol; Cell biology; Biology; Membrane protein; Biophysics; Chemistry; Biochemistry; Membrane; Signal transduction; G protein","score_opus":0.011033375971390275,"score_gpt":0.2462546014704284,"score_spread":0.23522122549903812,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022644503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99919665,0.00030752385,0.00005813041,0.0001779617,0.000048216047,0.00005322845,0.000015757967,0.0000033977062,0.00013915269],"genre_scores_gemma":[0.99856615,0.00013190822,0.000993571,0.000028418743,0.00022593794,3.9239592e-7,0.000006272997,0.00000429239,0.000043053577],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992993,0.000026472251,0.00028291845,0.00016563332,0.00007378494,0.0001519127],"domain_scores_gemma":[0.9992818,0.000010442696,0.00041886166,0.00012807889,0.00009177889,0.00006904078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013721356,0.00012665712,0.00024135034,0.000021026839,0.00002767782,0.0000128005,0.00017700432,0.00038809603,0.000028260823],"category_scores_gemma":[0.00021689622,0.00008886894,0.00009022939,0.00005249559,0.00010661758,0.0000032835367,0.00007743884,0.0002334378,1.5470093e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023719389,0.00005910471,0.0005543763,0.000016399354,0.00002985001,0.0000058273963,0.000004183717,0.0000010849805,0.99263275,0.0000043493665,0.00003225959,0.0064226207],"study_design_scores_gemma":[0.0003425494,0.00083429005,0.0023756658,0.000034449902,0.000009685861,0.00020902009,0.000018949444,0.000003740496,0.9946633,0.0001659897,0.0012396518,0.00010269363],"about_ca_topic_score_codex":9.3156757e-7,"about_ca_topic_score_gemma":3.1515805e-7,"teacher_disagreement_score":0.0063199275,"about_ca_system_score_codex":0.000008374181,"about_ca_system_score_gemma":0.000033924283,"threshold_uncertainty_score":0.36239702},"labels":[],"label_agreement":null},{"id":"W2022876339","doi":"10.1021/bi0606997","title":"The Periplasmic Domains of<i>Escherichia coli</i>HflKC Oligomerize through Right-Handed Coiled-Coil Interactions","year":2006,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Periplasmic space; Circular dichroism; Sedimentation equilibrium; Escherichia coli; Coiled coil; Chemistry; Protein subunit; Crystallography; Mutant; Biophysics; Ultracentrifuge; Biochemistry; Stereochemistry; Biology","score_opus":0.004757958722043886,"score_gpt":0.22096418589683742,"score_spread":0.21620622717479354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022876339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895721,0.0011413533,0.00018723686,0.0004325333,0.0004604472,0.0001450666,0.00008349053,0.00003191518,0.007945878],"genre_scores_gemma":[0.9943631,0.00047801752,0.0010006088,0.000111268426,0.00053686375,0.00004214225,0.00019657049,0.00003096317,0.0032404603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986396,0.00003573714,0.0004015956,0.000416223,0.00013741408,0.00036946958],"domain_scores_gemma":[0.9989097,0.000025708774,0.0002243034,0.0006716023,0.00011637189,0.000052290914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001008234,0.00025481667,0.00021713744,0.000016573773,0.00024703206,0.000047593654,0.00044037835,0.00035906478,0.000051702595],"category_scores_gemma":[0.000048100326,0.00019972821,0.00017506236,0.00015816836,0.00045907433,0.000003879729,0.00018623033,0.0001844691,0.000011757097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011387306,0.00009915625,0.00014430266,0.000021664762,0.00006582628,0.000002265703,0.000008431791,0.000004253213,0.99289745,0.00028745667,0.006101394,0.00025392039],"study_design_scores_gemma":[0.00043025045,0.000084121595,0.00038371535,0.0000122681195,0.000026777541,0.000023840805,0.000053241027,0.000011666353,0.8043789,0.0002481265,0.19414383,0.00020321562],"about_ca_topic_score_codex":0.00008403861,"about_ca_topic_score_gemma":0.00010402944,"teacher_disagreement_score":0.18851851,"about_ca_system_score_codex":0.000025686153,"about_ca_system_score_gemma":0.00013129029,"threshold_uncertainty_score":0.81446797},"labels":[],"label_agreement":null},{"id":"W2022898490","doi":"10.1128/jb.00046-15","title":"An Escherichia coli Mutant That Makes Exceptionally Long Cells","year":2015,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"","keywords":"Biology; Escherichia coli; Mutant; Escherichia coli Proteins; Mutation; Microbiology; Enterobacteriaceae; Genetics; Gene","score_opus":0.017459949096068628,"score_gpt":0.24786118516039285,"score_spread":0.23040123606432422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022898490","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968967,0.00030440468,0.0010863186,0.00041485866,0.0010595763,0.00007773452,0.00001592229,0.000007643884,0.00013687092],"genre_scores_gemma":[0.9952577,0.00029824217,0.0029396021,0.0004097256,0.000940465,0.000002318504,0.000036939284,0.0000225938,0.0000924526],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988284,0.00015603706,0.0004019551,0.00022335254,0.00012365285,0.00026656338],"domain_scores_gemma":[0.99880534,0.0000086563505,0.00039951896,0.00028822964,0.00028101148,0.00021725452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041054725,0.00017728147,0.0003140789,0.00008701657,0.000037200407,0.000033815042,0.00040234657,0.00044920325,0.000057389316],"category_scores_gemma":[0.00004635968,0.00014545991,0.0001156508,0.000063673615,0.00017776617,0.000009621968,0.00009742697,0.00020459226,0.000014028302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037629236,0.000105324056,0.0031310907,0.0000042568413,0.00006755605,0.00003494447,0.000026653872,0.000040652794,0.9941721,0.000034888562,0.0005913594,0.0014148715],"study_design_scores_gemma":[0.0012666412,0.0043971683,0.040147103,0.000012496999,0.000042490923,0.0006390457,0.00017325621,0.00001984021,0.8851046,0.00020958093,0.06770281,0.00028497048],"about_ca_topic_score_codex":0.000006091013,"about_ca_topic_score_gemma":0.000023209626,"teacher_disagreement_score":0.10906751,"about_ca_system_score_codex":0.0000245167,"about_ca_system_score_gemma":0.00024303918,"threshold_uncertainty_score":0.5931683},"labels":[],"label_agreement":null},{"id":"W2022936373","doi":"10.1139/w04-019","title":"Cytotoxic effects of pyocin S2 produced by <i>Pseudomonas aeruginosa</i> on the growth of three human cell lines","year":2004,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pseudomonas aeruginosa; Bacteriocin; Cytotoxicity; Microbiology; Chemistry; Sodium dodecyl sulfate; Cell culture; Bacteria; Biochemistry; Molecular biology; Biology; In vitro","score_opus":0.004893220419642798,"score_gpt":0.18158926582958484,"score_spread":0.17669604540994205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022936373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99644536,0.0016237216,0.0000319733,0.0012425354,0.00032983336,0.00019891487,0.00007911152,0.0000016230624,0.000046911908],"genre_scores_gemma":[0.9991761,0.00011635296,0.00012352789,0.00034276972,0.00016518809,0.0000025612171,0.000027297394,0.00001822689,0.000027980179],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897826,0.00007561661,0.00041692494,0.0001975124,0.000035924695,0.0002957707],"domain_scores_gemma":[0.9989392,0.000024279918,0.00041279328,0.00029358224,0.00020874724,0.00012140555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020498424,0.00017408315,0.00031762753,0.00011843453,0.00006813624,0.0000063664406,0.0005043023,0.00036432975,0.000010994131],"category_scores_gemma":[0.00011004397,0.00012427437,0.00014338078,0.00010512431,0.00041410772,0.0000018660317,0.000038153907,0.00021547698,0.0000021000249],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003883927,0.00005374744,0.0005706255,0.00003782757,0.000065853645,0.000010149546,0.000024952391,0.0000055450564,0.99651587,0.0002626695,0.0023421473,0.0000717627],"study_design_scores_gemma":[0.00082593266,0.0019156988,0.00041665902,0.000047607486,0.000030935957,0.00008578002,0.00001154027,4.5626507e-8,0.99294245,0.00025244805,0.0033491924,0.000121726174],"about_ca_topic_score_codex":0.00066060835,"about_ca_topic_score_gemma":0.0032799111,"teacher_disagreement_score":0.0035734468,"about_ca_system_score_codex":0.000027761285,"about_ca_system_score_gemma":0.00047069823,"threshold_uncertainty_score":0.5067762},"labels":[],"label_agreement":null},{"id":"W2024104089","doi":"10.1074/jbc.m402913200","title":"Three-dimensional Structure of Wza, the Protein Required for Translocation of Group 1 Capsular Polysaccharide across the Outer Membrane of Escherichia coli","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Tetramer; Crystallography; Bacterial outer membrane; Polysaccharide; Escherichia coli; Chemistry; Protein structure; Resolution (logic); Biophysics; Biology; Biochemistry; Gene","score_opus":0.013274237482979984,"score_gpt":0.24118185957872543,"score_spread":0.22790762209574544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024104089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99676675,0.00092314975,0.0011264447,0.000734611,0.00006882016,0.00023642213,0.00013976765,0.0000018268158,0.0000021937753],"genre_scores_gemma":[0.997467,0.00008034234,0.0021729153,0.00005514355,0.00017974943,0.000005085929,0.000024850717,0.000008312794,0.000006615522],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889827,0.000026623753,0.00060524105,0.00015863443,0.00013962452,0.00017160716],"domain_scores_gemma":[0.99872524,0.000022649303,0.00068963383,0.00025992823,0.00026639257,0.000036161833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031780027,0.00014236115,0.0003136545,0.000009065374,0.000049551636,0.0000057101306,0.00044377122,0.00045301794,0.00001395346],"category_scores_gemma":[0.00013222033,0.00007181163,0.00023114485,0.000085117324,0.00046592587,0.0000031064276,0.000074239026,0.00018093546,5.098495e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005872325,0.00009282968,0.00005693203,0.000058914196,0.00010929869,7.797738e-7,0.000026088574,0.00009031627,0.9984374,0.000045066547,0.000011373533,0.00048378363],"study_design_scores_gemma":[0.0009310215,0.0006768277,0.00062081474,0.000043185628,0.000028900004,0.000034532794,0.000060415838,0.000008783302,0.996382,0.0008815289,0.00024823679,0.00008373044],"about_ca_topic_score_codex":0.000016079828,"about_ca_topic_score_gemma":0.000013049704,"teacher_disagreement_score":0.0020553623,"about_ca_system_score_codex":0.000009874021,"about_ca_system_score_gemma":0.0000908756,"threshold_uncertainty_score":0.34940892},"labels":[],"label_agreement":null},{"id":"W2024137529","doi":"10.1371/journal.pone.0019589","title":"Crystal Structures of Two Aminoglycoside Kinases Bound with a Eukaryotic Protein Kinase Inhibitor","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Kinase; Aminoglycoside; Biochemistry; Casein kinase 1; Biology; Casein kinase 2; Kinome; Protein kinase A; Chemistry; Cyclin-dependent kinase 2; Antibiotics","score_opus":0.023395029795668244,"score_gpt":0.20555473801410082,"score_spread":0.18215970821843258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024137529","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99889535,0.00027527174,0.00003503543,0.000034451754,0.000026259147,0.00037464083,0.000038856735,0.000019238982,0.00030087915],"genre_scores_gemma":[0.9914387,0.0000260268,0.00808581,0.00003887234,0.00015428118,0.00003396837,0.000042290736,0.000027804934,0.00015228619],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906385,0.000031982116,0.00020412724,0.00031391784,0.00014479457,0.00024135674],"domain_scores_gemma":[0.9993042,0.0000029369126,0.00012286937,0.00039373394,0.000109797205,0.00006651164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004670998,0.00017581426,0.00021893805,0.00005590489,0.00004261359,0.000012746813,0.00019528257,0.00017573065,0.00005682162],"category_scores_gemma":[0.000035417223,0.00014397495,0.000043482967,0.000086184686,0.00025080526,0.0000030676551,0.00012939211,0.00009478499,0.000002871432],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003493712,0.00059014367,0.003520272,0.000078242345,0.00016547188,0.000011026638,0.00003169177,3.9635685e-7,0.9947442,0.00023479885,0.00001783682,0.0002565396],"study_design_scores_gemma":[0.0007272341,0.0019306252,0.0050763506,0.00007491863,0.00008027231,0.0000090223175,0.0000232407,0.0000029963865,0.99140465,0.00040263182,0.00006819464,0.00019984503],"about_ca_topic_score_codex":0.00008314111,"about_ca_topic_score_gemma":0.0001565559,"teacher_disagreement_score":0.008050774,"about_ca_system_score_codex":0.000007091719,"about_ca_system_score_gemma":0.00006702707,"threshold_uncertainty_score":0.5871128},"labels":[],"label_agreement":null},{"id":"W2024617075","doi":"10.1074/jbc.m113.469981","title":"Dissection of the ATPase Active Site of P1 ParA Reveals Multiple Active Forms Essential for Plasmid Partition","year":2013,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Plasmid; Repressor; Walker motifs; Biology; ATPase; Mutant; DNA; Biochemistry; Gene; Cell biology; Molecular biology; ATP hydrolysis; Enzyme; Gene expression","score_opus":0.012717114358325947,"score_gpt":0.24401532787865352,"score_spread":0.23129821352032756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024617075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99896556,0.000059916354,0.00031270334,0.00018780468,0.00010718701,0.00019719888,0.00011849813,0.0000023616901,0.00004879006],"genre_scores_gemma":[0.9991713,0.00012934241,0.0003395323,0.000025806861,0.0002259923,0.000015243427,0.000049966482,0.00000658776,0.0000362287],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991617,0.000029524306,0.00041717367,0.00015205624,0.000085226915,0.00015427163],"domain_scores_gemma":[0.998794,0.000040425377,0.00068495405,0.00016388614,0.00026692342,0.00004978451],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011217775,0.0001196247,0.00024396674,0.000013731849,0.000041599298,0.000006499524,0.00018753616,0.0004135614,0.000040238807],"category_scores_gemma":[0.00030647864,0.00006948337,0.00025450916,0.000062266176,0.0002004996,0.0000066665593,0.0000914433,0.00013997678,4.4351773e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006425008,0.0001328903,0.0016265449,0.000036434307,0.000073415904,2.968788e-7,0.000011874348,0.000009858873,0.99607,0.0000046671476,0.00019122828,0.001200254],"study_design_scores_gemma":[0.00062844995,0.00055102416,0.016283112,0.000027614136,0.000026710279,0.000027857723,0.00008874933,0.000016224976,0.9811364,0.00043122726,0.0006971852,0.000085443935],"about_ca_topic_score_codex":0.000004476933,"about_ca_topic_score_gemma":0.000002165422,"teacher_disagreement_score":0.014933634,"about_ca_system_score_codex":0.000014808607,"about_ca_system_score_gemma":0.00003696445,"threshold_uncertainty_score":0.31897643},"labels":[],"label_agreement":null},{"id":"W2025681917","doi":"10.1016/j.enzmictec.2008.01.019","title":"Periplasmic chaperone FkpA reduces extracytoplasmic stress response and improves cell-surface display on Escherichia coli","year":2008,"lang":"en","type":"article","venue":"Enzyme and Microbial Technology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Department of Education of Guangdong Province; Science Foundation Ireland","keywords":"Periplasmic space; Cell envelope; Escherichia coli; Chaperone (clinical); Cell; Cell biology; Biology; Gene; Biochemistry; Medicine","score_opus":0.005641744482863898,"score_gpt":0.2044156941033098,"score_spread":0.1987739496204459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025681917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99577916,0.0021925115,0.000024908457,0.0012948915,0.0002333132,0.00025981243,0.000072049246,0.00007489722,0.000068488414],"genre_scores_gemma":[0.99392456,0.0032117744,0.0012188778,0.00021142431,0.000097559285,0.00001488041,0.000034371435,0.000038767503,0.0012478059],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984948,0.0000594824,0.00025304744,0.0006958482,0.000060167928,0.00043667958],"domain_scores_gemma":[0.99934983,0.000019529998,0.00011189419,0.00039173017,0.000041933985,0.00008505512],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00011154254,0.00031617354,0.0002949832,0.0001270811,0.00026171264,0.00002564673,0.00025354658,0.0008427714,0.000010757149],"category_scores_gemma":[0.000050438153,0.00029769924,0.000046855126,0.0001551004,0.00079502905,0.0000058691203,0.0003232423,0.00030413538,0.000011001447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008171479,0.00010996424,0.00017949521,0.000014137946,0.000028391652,0.000021110287,0.000062506886,0.0000032160822,0.9968548,0.000081494756,0.00074858,0.0010791998],"study_design_scores_gemma":[0.00096985267,0.0014932061,0.0013190246,0.000016373646,0.000016343693,0.00021199521,0.00012189187,0.000011734045,0.95910597,0.000023899329,0.036373537,0.00033615928],"about_ca_topic_score_codex":0.000013785028,"about_ca_topic_score_gemma":0.000019261759,"teacher_disagreement_score":0.037748773,"about_ca_system_score_codex":0.000013881266,"about_ca_system_score_gemma":0.00007810399,"threshold_uncertainty_score":0.9999475},"labels":[],"label_agreement":null},{"id":"W2025970242","doi":"10.1016/s0962-8924(99)01681-5","title":"No longer an exclusive club: eukaryotic signalling domains in bacteria","year":2000,"lang":"en","type":"review","venue":"Trends in Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Ontario Institute for Cancer Research","funders":"Natural Sciences and Engineering Research Council of Canada; European Commission","keywords":"Biology; Phosphorylation; Cell biology; Signal transducing adaptor protein; Kinase; Signalling; Function (biology); Threonine; Phosphatase; Serine; Protein tyrosine phosphatase; Biochemistry","score_opus":0.02648645697820186,"score_gpt":0.3074949201796274,"score_spread":0.28100846320142553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025970242","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.024811221,0.96858793,0.00000827119,0.000016336666,0.00084972807,0.00041446352,0.00019266209,0.0000317887,0.0050875708],"genre_scores_gemma":[0.004479982,0.98813945,0.00073342485,0.0000814951,0.0006884902,0.0000934591,0.004269109,0.000099374185,0.0014151982],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962302,0.00053314393,0.0009939168,0.0013323636,0.00006459082,0.0008457849],"domain_scores_gemma":[0.99866307,0.00003647701,0.00031597642,0.00083487167,0.000026785701,0.0001228119],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000259939,0.00073992624,0.0015759984,0.0007185119,0.000047167887,0.000028887947,0.0008768557,0.0028501677,0.0006827042],"category_scores_gemma":[0.000015717023,0.00065102166,0.00033597098,0.000502917,0.00025662177,0.0000041059684,0.00035258915,0.00066944177,0.000105586165],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000105123356,0.0002951657,0.000053601336,0.0005699892,0.00006283288,0.000060661197,0.000021812204,0.0000083511295,0.04158852,0.000024814379,0.00008849988,0.95712066],"study_design_scores_gemma":[0.00068563415,0.0009817485,0.00004422768,0.0003966342,0.00009234776,0.000034123113,0.0000059288573,0.000009400419,0.0016655268,0.000049621376,0.9952268,0.0008080294],"about_ca_topic_score_codex":0.000036392437,"about_ca_topic_score_gemma":0.00027209416,"teacher_disagreement_score":0.9951383,"about_ca_system_score_codex":0.00005832131,"about_ca_system_score_gemma":0.0001600736,"threshold_uncertainty_score":0.9995941},"labels":[],"label_agreement":null},{"id":"W2026018715","doi":"10.1139/o01-140","title":"Assembly strategies and GTPase regulation of the eukaryotic and <i>Escherichia coli</i> translocons","year":2001,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre","funders":"","keywords":"Translocon; Signal recognition particle receptor; Signal recognition particle; GTPase; Cell biology; Biogenesis; Endoplasmic reticulum; Biology; Chromosomal translocation; Protein targeting; Cytosol; Transport protein; Signal peptide; Membrane protein; Membrane; Biochemistry; Peptide sequence","score_opus":0.006150307483046381,"score_gpt":0.2043800048592174,"score_spread":0.19822969737617102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2026018715","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99519324,0.0032820848,0.00006281331,0.00033755234,0.000059710543,0.000111627895,0.000021103833,0.0000067166784,0.0009251326],"genre_scores_gemma":[0.9974117,0.0019581981,0.0001814474,0.000102552214,0.00006869336,0.0000063217353,0.000035426132,0.00000782587,0.00022783133],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993004,0.000039131774,0.00016616128,0.00030347495,0.00002858663,0.00016224266],"domain_scores_gemma":[0.9996094,0.00001081446,0.00008416357,0.00021254978,0.00003150856,0.000051575906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000791168,0.0001425442,0.00014353055,0.000012638149,0.00007800186,0.00001918693,0.00010017306,0.00039378513,0.0000065136796],"category_scores_gemma":[0.0000128794145,0.00010861121,0.000032185573,0.00006127294,0.00049395283,0.0000031098166,0.00010393128,0.000082300445,1.8211652e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060086764,0.000025957272,0.003084189,0.000045362664,0.000016315611,4.0851836e-7,0.000013453876,8.269579e-7,0.9947991,0.00019642315,0.000034367546,0.0017235421],"study_design_scores_gemma":[0.0004291958,0.0001922051,0.010164168,0.000008343444,0.00002783073,0.000029595274,0.00012673445,0.000020191455,0.9808838,0.00026867504,0.007712961,0.00013629721],"about_ca_topic_score_codex":0.000015643542,"about_ca_topic_score_gemma":0.000011678413,"teacher_disagreement_score":0.013915264,"about_ca_system_score_codex":0.0000021956082,"about_ca_system_score_gemma":0.000051737672,"threshold_uncertainty_score":0.44290364},"labels":[],"label_agreement":null},{"id":"W2027010205","doi":"10.1016/j.str.2013.03.010","title":"Wzi Is an Outer Membrane Lectin that Underpins Group 1 Capsule Assembly in Escherichia coli","year":2013,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Wellcome Trust","keywords":"Bacterial outer membrane; Periplasmic space; Capsule; Escherichia coli; Lectin; Bacterial capsule; Extracellular; Biology; Biophysics; Cell biology; Biochemistry; Chemistry; Microbiology; Gene; Virulence","score_opus":0.009719545458681162,"score_gpt":0.22528128514524748,"score_spread":0.2155617396865663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027010205","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980083,0.00015504018,0.00006672086,0.00069129356,0.00043829737,0.00027014833,0.000036472826,0.000022383409,0.0003113082],"genre_scores_gemma":[0.9963288,0.00008642642,0.0015136369,0.0012370659,0.00024526924,0.000015609967,0.0001667492,0.000032865315,0.00037359956],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884415,0.00005344305,0.00017373524,0.00047109486,0.000096040385,0.0003615373],"domain_scores_gemma":[0.9993318,0.0000022927125,0.00007019801,0.00046438535,0.00004250796,0.00008884121],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000049481452,0.00022432934,0.00019307494,0.000056742487,0.000057362915,0.00006731039,0.00029972236,0.0006516661,0.00031774008],"category_scores_gemma":[0.0000120975965,0.0001951557,0.00005620458,0.0001285373,0.00007946151,0.000008343434,0.00013147607,0.00022512674,0.0000146105685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015773634,0.000027746499,0.00087910314,0.000010660209,0.000023966286,0.0000024909125,0.0000612416,0.000004012996,0.9962926,0.000069538495,0.0010266546,0.0015862085],"study_design_scores_gemma":[0.000529949,0.00031559353,0.033984933,0.0000059826657,0.000009686568,0.000015460748,0.000108383654,0.00005338351,0.94778115,0.0006867306,0.016209614,0.00029914864],"about_ca_topic_score_codex":0.00034908592,"about_ca_topic_score_gemma":0.0012713929,"teacher_disagreement_score":0.04851147,"about_ca_system_score_codex":0.000016828335,"about_ca_system_score_gemma":0.0000408193,"threshold_uncertainty_score":0.79582185},"labels":[],"label_agreement":null},{"id":"W2027122965","doi":"10.1139/w03-014","title":"Multidrug resistant phenotype of <i>Bacillus subtilis</i> spontaneous mutants isolated in the presence of puromycin and lincomycin","year":2003,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Operon; Biology; Bacillus subtilis; Mutant; Repressor; Gene; Lincomycin; Molecular biology; Major facilitator superfamily; TetR; Transcription (linguistics); Efflux; Puromycin; Genetics; Gene expression; Protein biosynthesis; Antibiotics; Bacteria","score_opus":0.005594529368173022,"score_gpt":0.18886748155072916,"score_spread":0.18327295218255613,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027122965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99610406,0.0031338776,0.000017444252,0.00025205416,0.00018915469,0.00011550488,0.00008234035,5.747283e-7,0.00010497772],"genre_scores_gemma":[0.99923414,0.00027736678,0.00032779126,0.000091911344,0.00002525876,6.2977915e-7,0.000008943689,0.000008759469,0.000025179748],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887156,0.00023429934,0.00046139432,0.00015512132,0.000029436385,0.0002482041],"domain_scores_gemma":[0.9992215,0.000034383156,0.00028261344,0.00022864893,0.00014457142,0.0000882566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044742844,0.00012079542,0.0002766286,0.00013342456,0.000031313484,0.0000060340903,0.00031743516,0.0002858437,0.00001618419],"category_scores_gemma":[0.00026180493,0.000090419126,0.000049150567,0.00013245824,0.00030258554,0.0000022666393,0.000022261247,0.0001817043,3.9503172e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017697425,0.000021735355,0.0009057667,0.000014273872,0.00003087069,0.00014887885,0.00016694471,0.000008269348,0.99779695,0.00008621361,0.00015049732,0.00049261685],"study_design_scores_gemma":[0.0013023994,0.0020991187,0.0030201208,0.000066692,0.000038634156,0.005314012,0.00046413872,0.000005272624,0.92736244,0.00015471551,0.05996492,0.0002075481],"about_ca_topic_score_codex":0.0008132464,"about_ca_topic_score_gemma":0.02843479,"teacher_disagreement_score":0.07043453,"about_ca_system_score_codex":0.000015840285,"about_ca_system_score_gemma":0.00047454552,"threshold_uncertainty_score":0.98929375},"labels":[],"label_agreement":null},{"id":"W2027516256","doi":"10.1042/bj20081395","title":"<i>Pseudomonas aeruginosa</i> MurE amide ligase: enzyme kinetics and peptide inhibitor","year":2009,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"DNA ligase; Enzyme; Biochemistry; Chemistry; Biosynthesis; Stereochemistry; Peptide; Pseudomonas aeruginosa; Biology; Bacteria","score_opus":0.005535581233638188,"score_gpt":0.21762621026419351,"score_spread":0.21209062903055534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027516256","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931931,0.0034501308,0.00022483902,0.0024711213,0.00025924513,0.00009821108,0.00001690053,0.000021959064,0.00026447643],"genre_scores_gemma":[0.99183255,0.0016099083,0.003335517,0.0012418166,0.0017171632,0.0000020621105,0.000040002637,0.000020749829,0.00020025056],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998658,0.00003595221,0.00034894247,0.00037188877,0.00016916462,0.00041606984],"domain_scores_gemma":[0.99919575,0.000008078744,0.00013361558,0.00027704134,0.000104278224,0.0002812394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001331322,0.00025332556,0.00021709326,0.000059021982,0.000098312536,0.00009179277,0.0002725071,0.00052414235,0.00001738947],"category_scores_gemma":[0.00009428592,0.00022195354,0.0001160388,0.0000947004,0.0001771136,0.0000041108833,0.00014023163,0.0003602694,0.0000072095295],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086922264,0.000098047414,0.00013571396,0.0000050058165,0.000023663617,0.0000220211,0.000008076132,9.597233e-7,0.97518855,0.000045288387,0.020105738,0.0042800256],"study_design_scores_gemma":[0.0006900134,0.00079455384,0.0008777377,0.0000249606,0.000025095082,0.00093581236,0.000017076556,0.000005034831,0.92324233,0.0003295608,0.07278428,0.00027353797],"about_ca_topic_score_codex":0.0000013050251,"about_ca_topic_score_gemma":0.0000013655607,"teacher_disagreement_score":0.052678548,"about_ca_system_score_codex":0.000017896053,"about_ca_system_score_gemma":0.000050910257,"threshold_uncertainty_score":0.9051003},"labels":[],"label_agreement":null},{"id":"W2027613323","doi":"10.1016/s0147-619x(02)00151-8","title":"Analysis of pCU1 replication origins: dependence of oriS on the plasmid-encoded replication initiation protein RepA","year":2003,"lang":"en","type":"article","venue":"Plasmid","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Replicon; Biology; Plasmid; Origin of replication; Genetics; Gene; Mutant; DNA replication; Escherichia coli; Molecular biology","score_opus":0.0177226014058228,"score_gpt":0.25673977984465224,"score_spread":0.23901717843882944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027613323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99732375,0.000055031618,0.0009293321,0.0003438048,0.00005034948,0.00034467297,0.00005174997,0.000011234716,0.0008900634],"genre_scores_gemma":[0.9985217,0.00013512367,0.0008991826,0.0000833023,0.000022701051,0.00007640394,0.00017637621,0.00001006119,0.000075134885],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874425,0.00010459935,0.00038237125,0.00048050605,0.00015826276,0.00013001075],"domain_scores_gemma":[0.9979699,0.000033965556,0.00041455808,0.001370352,0.00018557624,0.000025596728],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050966215,0.00011647362,0.00018471599,0.00012162083,0.00005173244,0.00000868471,0.00023448108,0.00023723661,0.00003061306],"category_scores_gemma":[0.0008744494,0.000091276874,0.00010209565,0.00052633183,0.00009155573,0.00000369414,0.000038812195,0.00008404629,0.000004721498],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007731036,0.00007715561,0.0015579788,0.000010886969,0.00016290105,1.1732282e-7,0.000020830645,0.00016282918,0.99123806,0.005916761,0.0001039478,0.00067125296],"study_design_scores_gemma":[0.00015331407,0.00026695567,0.0027709713,0.0000111932795,0.00010975008,0.0000016441647,0.000025684354,0.00032603752,0.9875785,0.00026475408,0.008394545,0.00009664179],"about_ca_topic_score_codex":0.000028887427,"about_ca_topic_score_gemma":0.000045000335,"teacher_disagreement_score":0.008290597,"about_ca_system_score_codex":0.00002151444,"about_ca_system_score_gemma":0.00007231017,"threshold_uncertainty_score":0.3722163},"labels":[],"label_agreement":null},{"id":"W2028576752","doi":"10.1042/bj20050060","title":"Functional reconstitution of the <i>Salmonella typhimurium</i> PhoQ histidine kinase sensor in proteoliposomes","year":2005,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Kindai University; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Histidine kinase; Dephosphorylation; Response regulator; Histidine; Biochemistry; Phosphorylation; Autophosphorylation; Kinase; Extracellular; Two-component regulatory system; Biology; Transmembrane protein; Chemistry; Protein kinase A; Cell biology; Enzyme; Phosphatase; Gene; Mutant","score_opus":0.009407214381300294,"score_gpt":0.2093087430381951,"score_spread":0.1999015286568948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028576752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99642974,0.001017187,0.00010981977,0.0017737098,0.00030945538,0.00012061113,0.000012859578,0.00000430452,0.00022229615],"genre_scores_gemma":[0.99730474,0.00026083656,0.0012887375,0.00016658704,0.0007568954,0.000004827373,0.000013402928,0.000008742971,0.00019520307],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916667,0.000040993036,0.00030514222,0.00018170639,0.00011751941,0.00018799442],"domain_scores_gemma":[0.99951303,0.000005459218,0.00014123908,0.00019594483,0.00008670502,0.000057626035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015223195,0.0001157072,0.00012455067,0.00004511244,0.000051012263,0.000011104273,0.00019100805,0.00026758644,0.0000443081],"category_scores_gemma":[0.000100911355,0.0000826331,0.00010644335,0.00011046641,0.00021392108,0.0000027576946,0.00010197621,0.00022969917,0.000005414918],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013879,0.00009595006,0.0012306478,0.00000627376,0.000014967228,0.0000014853537,0.0000035198718,0.000030792842,0.9933492,0.000050950835,0.003465438,0.001611965],"study_design_scores_gemma":[0.00058063626,0.00007922582,0.0028315221,0.000024383067,0.000009768281,0.00024538505,0.000007827892,0.000015156214,0.96551067,0.00006882677,0.030522546,0.00010404751],"about_ca_topic_score_codex":0.0000037905297,"about_ca_topic_score_gemma":0.0000063475723,"teacher_disagreement_score":0.027838543,"about_ca_system_score_codex":0.000034217774,"about_ca_system_score_gemma":0.000118663025,"threshold_uncertainty_score":0.336968},"labels":[],"label_agreement":null},{"id":"W2029147152","doi":"10.1139/w05-126","title":"Prediction and functional analysis of the replication origin of the linear plasmid pSCL2 in<i>Streptomyces clavuligerus</i>","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Streptomyces clavuligerus; Plasmid; Biology; Open reading frame; Origin of replication; DNA replication; Genetics; Streptomyces; DnaA; Computational biology; Gene; Peptide sequence; Actinomycetales; Bacteria","score_opus":0.006914529537392147,"score_gpt":0.19116557642406543,"score_spread":0.18425104688667326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029147152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982184,0.00056223746,0.000030376174,0.00065626873,0.00026709866,0.000060657,0.00016389116,5.1566076e-7,0.000040558774],"genre_scores_gemma":[0.9995877,0.00006573195,0.00007271064,0.000082781014,0.00008918909,8.7662454e-7,0.00004290313,0.0000038061742,0.00005430037],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993161,0.00006615009,0.00034981305,0.00013142535,0.000025505917,0.00011102933],"domain_scores_gemma":[0.99926573,0.000009873188,0.00033006538,0.0002431467,0.000120764154,0.000030444811],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018299796,0.00006757444,0.00016192834,0.0001489804,0.00003998123,0.0000031982754,0.0001738708,0.00021683084,0.000012301421],"category_scores_gemma":[0.000048283375,0.000043382013,0.00010946896,0.0002810606,0.00029355983,0.000001900108,0.000029390623,0.00010818737,1.1195482e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019984154,0.0000090456715,0.15738986,0.0000030195217,0.00008848039,2.4041248e-7,0.000007844437,0.00031586652,0.84129184,0.00006570104,0.0006592715,0.0001488675],"study_design_scores_gemma":[0.0002546876,0.00011007056,0.37176237,0.0000113056385,0.00012192175,0.00006555887,0.000018476643,0.000020625708,0.5942985,0.000054855103,0.03323505,0.00004662853],"about_ca_topic_score_codex":0.00095173693,"about_ca_topic_score_gemma":0.02282718,"teacher_disagreement_score":0.24699335,"about_ca_system_score_codex":0.000019939422,"about_ca_system_score_gemma":0.0003133583,"threshold_uncertainty_score":0.9950037},"labels":[],"label_agreement":null},{"id":"W2029148399","doi":"10.1128/jb.05741-11","title":"Rhamnosyltransferase Genes <i>migA</i> and <i>wapR</i> Are Regulated in a Differential Manner To Modulate the Quantities of Core Oligosaccharide Glycoforms Produced by Pseudomonas aeruginosa","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Krell Institute; Canada Research Chairs; Health Canada; National Institutes of Health; Cystic Fibrosis Canada","keywords":"Pseudomonas aeruginosa; Biology; Quorum sensing; Microbiology; Oligosaccharide; Gene; Lipopolysaccharide; Pseudomonadaceae; Biosynthesis; Bacteria; Polysaccharide; Pseudomonadales; Biochemistry; Immunology; Virulence; Genetics","score_opus":0.011126619602156222,"score_gpt":0.22689810026671645,"score_spread":0.21577148066456023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029148399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99595416,0.0020156568,0.000075646356,0.0011375103,0.00053222163,0.00021013811,0.000065964225,0.000003989562,0.000004741046],"genre_scores_gemma":[0.997843,0.0013761169,0.0001636898,0.00022190757,0.00030192497,0.000007466083,0.00002426719,0.000020671217,0.00004094239],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985847,0.000094746676,0.000615388,0.00021820865,0.00009973519,0.00038720996],"domain_scores_gemma":[0.9991076,0.00001839552,0.00035193036,0.00028093686,0.00012531244,0.000115852345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030210568,0.00022128307,0.00046511422,0.00011515422,0.00004946255,0.000015917281,0.0002905238,0.00034138517,0.000012964538],"category_scores_gemma":[0.000053879252,0.00014549185,0.00010409955,0.00011449557,0.0002239767,0.000012270666,0.00014204634,0.00020773735,9.525416e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006705029,0.000108662076,0.018717233,0.000025752404,0.000085936255,0.000004230453,0.00011346613,0.0000100811185,0.97875255,0.00008789932,0.00035979156,0.0010638726],"study_design_scores_gemma":[0.0009194808,0.0009813249,0.060225,0.00004215947,0.000045377656,0.0002805529,0.00011424049,0.000007879086,0.932518,0.00006628001,0.0045932136,0.00020651307],"about_ca_topic_score_codex":0.000037825415,"about_ca_topic_score_gemma":0.000043124724,"teacher_disagreement_score":0.04623459,"about_ca_system_score_codex":0.00001213483,"about_ca_system_score_gemma":0.000040958657,"threshold_uncertainty_score":0.59329855},"labels":[],"label_agreement":null},{"id":"W2029539160","doi":"10.1016/j.cub.2004.02.019","title":"Pathogens: Bacterial Needles Ruled to Length and Specificity","year":2004,"lang":"en","type":"review","venue":"Current Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Biogenesis; Identification (biology); Computational biology; Cell biology; Genetics; Ecology; Gene","score_opus":0.04093784037862121,"score_gpt":0.3214670920532443,"score_spread":0.2805292516746231,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029539160","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0048768814,0.9907337,0.00010964471,0.000036085985,0.0027274718,0.0007537009,0.00066339487,0.000032166805,0.000066962704],"genre_scores_gemma":[0.00036821785,0.99511254,0.0004779287,0.0000285083,0.0017090744,0.00008987335,0.002116313,0.000058071244,0.000039475242],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99761665,0.0001707015,0.0005765842,0.0010469203,0.00005561165,0.00053353526],"domain_scores_gemma":[0.998875,0.000017132417,0.00023952272,0.00061911345,0.00006156163,0.00018766585],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00016487457,0.0006012038,0.0011991167,0.00018135052,0.00008303321,0.00004232364,0.00047213907,0.0012742169,0.00004356767],"category_scores_gemma":[0.00010088306,0.00048642143,0.00029309664,0.00015970213,0.00024360481,0.0000014008893,0.00070805446,0.00032587815,0.00007447973],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028399998,0.000066073844,0.00000489721,0.0012665829,0.000091884285,0.0000019912688,0.000007747914,6.7501155e-8,0.019943813,0.00033717626,0.000248875,0.9780025],"study_design_scores_gemma":[0.00027346445,0.00050963473,0.000010289886,0.0008220874,0.00015704276,0.0000565363,0.000004251973,7.740615e-8,0.0009742646,0.00010073788,0.99653596,0.0005556619],"about_ca_topic_score_codex":0.00000740922,"about_ca_topic_score_gemma":0.000012217296,"teacher_disagreement_score":0.99628705,"about_ca_system_score_codex":0.00004046098,"about_ca_system_score_gemma":0.00025247596,"threshold_uncertainty_score":0.9997587},"labels":[],"label_agreement":null},{"id":"W2029687104","doi":"10.1074/jbc.m701402200","title":"MukE and MukF Form Two Distinct High Affinity Complexes","year":2007,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Dimer; Ultracentrifuge; Stoichiometry; Chemistry; DNA; Nucleotide; DNA-binding protein; Crystallography; Biology; Biophysics; Stereochemistry; Biochemistry; Transcription factor","score_opus":0.016371843470237627,"score_gpt":0.2566200180624907,"score_spread":0.24024817459225306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029687104","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99803996,0.00080776267,0.00030538332,0.00017983787,0.00012672688,0.00004217213,0.000019523717,0.000007707193,0.00047091418],"genre_scores_gemma":[0.9970845,0.00057254423,0.0014365646,0.00011058343,0.0007055694,6.441944e-7,0.000030913856,0.000008064875,0.000050632672],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901277,0.000017530558,0.0004059322,0.00020702563,0.0000910578,0.0002656778],"domain_scores_gemma":[0.9992687,0.000032618344,0.00027339417,0.00016425313,0.00011469578,0.00014630819],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043391975,0.0001629517,0.00025448095,0.000019622466,0.00006196101,0.000020513844,0.00024580176,0.00038183155,0.00004725004],"category_scores_gemma":[0.00019701243,0.00011304326,0.00010533784,0.000058721656,0.00027543047,0.0000024795104,0.00019270062,0.00023754725,0.0000012155497],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002416331,0.00007489386,0.006816154,0.000011545657,0.000035996123,0.00002184599,0.0000037458947,3.0395557e-7,0.9882549,0.000034057095,0.00017128304,0.0043336223],"study_design_scores_gemma":[0.00075753755,0.00052532996,0.03159872,0.00001041928,0.000014878691,0.00040277472,0.000046261892,8.982378e-7,0.9486693,0.0006424797,0.017165102,0.00016626515],"about_ca_topic_score_codex":0.0000056050226,"about_ca_topic_score_gemma":0.000007493893,"teacher_disagreement_score":0.039585587,"about_ca_system_score_codex":0.0000134852435,"about_ca_system_score_gemma":0.000029958674,"threshold_uncertainty_score":0.46097705},"labels":[],"label_agreement":null},{"id":"W2029807656","doi":"10.1073/pnas.1007141107","title":"Appropriation of the MinD protein-interaction motif by the dimeric interface of the bacterial cell division regulator MinE","year":2010,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Ottawa","funders":"Knut och Alice Wallenbergs Stiftelse; Canadian Institutes of Health Research; Sweden-America Foundation","keywords":"Dimer; Biophysics; Binding site; Plasma protein binding; Chemistry; Crystallography; Stereochemistry; Biochemistry; Biology","score_opus":0.010290433482305022,"score_gpt":0.2581662551990158,"score_spread":0.2478758217167108,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029807656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968552,0.000042075364,0.0000020880013,0.0023921933,0.00018357657,0.00031905633,0.000021304553,0.0000011618624,0.00018337414],"genre_scores_gemma":[0.9994033,0.000009302242,0.00025154636,0.000025495983,0.00008744155,0.000006537214,5.577093e-7,0.0000037613772,0.00021206861],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989902,0.000016442988,0.0002948169,0.00018727175,0.00041849382,0.000092822935],"domain_scores_gemma":[0.99895245,0.000016667282,0.0007638152,0.000040145056,0.00021572731,0.000011201278],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006014586,0.000085221975,0.00010036198,0.000027792148,0.000118832235,0.000012964907,0.0010026585,0.00018060104,0.000009411945],"category_scores_gemma":[0.0002550918,0.00003774972,0.000089233916,0.00027878978,0.0009232638,0.000014471059,0.00030649305,0.00016911417,1.7855228e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029409544,0.000043848722,0.0007869017,0.00001926898,0.000008422772,1.1555278e-10,0.000047262663,0.00001106684,0.9981341,0.00019659432,0.00022438639,0.00049877143],"study_design_scores_gemma":[0.00012683665,0.00008520263,0.021035148,0.000028396189,0.000010445548,0.0000016545405,0.000057217105,0.00012490166,0.97642654,0.0006153502,0.0014453037,0.0000430024],"about_ca_topic_score_codex":0.000009628787,"about_ca_topic_score_gemma":7.423691e-7,"teacher_disagreement_score":0.021707525,"about_ca_system_score_codex":0.0000061867413,"about_ca_system_score_gemma":0.0000308168,"threshold_uncertainty_score":0.3401804},"labels":[],"label_agreement":null},{"id":"W2029987289","doi":"10.1111/j.1574-6976.2009.00195.x","title":"Conjugative DNA metabolism in Gram-negative bacteria","year":2009,"lang":"en","type":"article","venue":"FEMS Microbiology Reviews","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":359,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; Instituto de Salud Carlos III; National Institutes of Health; Canadian Institutes of Health Research; Austrian Science Fund","keywords":"Bacterial conjugation; Biology; DNA; Bacteria; Cleavage (geology); Nucleoprotein; Gram-negative bacteria; Genetics; Cell biology; Biochemistry; Plasmid; Escherichia coli; Gene","score_opus":0.01288485864271925,"score_gpt":0.25304305370717683,"score_spread":0.2401581950644576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029987289","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9853074,0.011836197,0.000047643414,0.0008321077,0.00048648485,0.00074247544,0.00007238487,0.000020293935,0.00065499917],"genre_scores_gemma":[0.97803736,0.0142848585,0.0031236175,0.0029442771,0.00038787062,0.000063453226,0.00053454103,0.00002590728,0.0005981399],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.998095,0.0002968316,0.00054330047,0.00059796846,0.000019017205,0.0004478954],"domain_scores_gemma":[0.99916947,0.000011141735,0.00023054732,0.00046782213,0.00005729089,0.000063705455],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003612128,0.0003165134,0.0006225224,0.000091366535,0.00005146388,0.000017041833,0.00036611932,0.0005668508,0.000084003776],"category_scores_gemma":[0.00015083073,0.00025811486,0.00016064096,0.00020015812,0.00021812604,0.0000039363413,0.00011645442,0.00022207189,0.00012266915],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065890374,0.00006844907,0.000088529036,0.0000055297946,0.000022046019,0.0000022799422,0.00004553705,2.2430748e-7,0.98390734,0.00018071059,0.0025034845,0.013110002],"study_design_scores_gemma":[0.00055839575,0.00030493853,0.003978237,0.000025744279,0.000014281855,0.000041081752,0.000011870836,3.6943206e-7,0.46924466,0.0002892675,0.52528244,0.00024872195],"about_ca_topic_score_codex":0.000011739344,"about_ca_topic_score_gemma":0.00008195924,"teacher_disagreement_score":0.5227789,"about_ca_system_score_codex":0.00001758571,"about_ca_system_score_gemma":0.00004615302,"threshold_uncertainty_score":0.9999871},"labels":[],"label_agreement":null},{"id":"W2030485934","doi":"10.4161/rna.22746","title":"The<i>hok</i>mRNA family","year":2012,"lang":"en","type":"article","venue":"RNA Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Messenger RNA; RNA; Biology; Antisense RNA; Ribosome; Plasmid; Transcription (linguistics); Translation (biology); Genetics; Computational biology; Gene","score_opus":0.009958390737724488,"score_gpt":0.23965120790073596,"score_spread":0.2296928171630115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030485934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9861764,0.0069575724,0.00023731703,0.0007540222,0.0014468312,0.000117564006,0.000016452483,0.000025106698,0.0042687496],"genre_scores_gemma":[0.9952521,0.0019175916,0.00036610482,0.0006676421,0.0010355987,0.000018881014,0.000058668415,0.00001702989,0.0006664096],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99895245,0.00007399816,0.00018054868,0.00022009584,0.000038391256,0.0005345371],"domain_scores_gemma":[0.9993619,0.000017374941,0.00007053681,0.00042293224,0.000040546776,0.00008672422],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002483581,0.00014443658,0.000119478835,0.000022963766,0.00016223067,0.000015100577,0.00032571465,0.00039527685,0.000013672447],"category_scores_gemma":[0.000061354054,0.00009712864,0.00007557911,0.000068172005,0.00025255786,0.000001571147,0.00022049852,0.0001126654,0.00009049502],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034312037,0.000024964613,0.0025456992,0.000001248029,0.000032868942,2.1214578e-7,0.0000055069368,1.6162356e-7,0.9711821,0.0030521639,0.0032553633,0.019865379],"study_design_scores_gemma":[0.00016743256,0.00019055823,0.0050079417,9.430146e-7,0.0000069623293,0.000013660037,0.000019193069,0.0000016841833,0.27699766,0.00025776838,0.71721137,0.00012482872],"about_ca_topic_score_codex":0.000014691,"about_ca_topic_score_gemma":0.0000134831525,"teacher_disagreement_score":0.713956,"about_ca_system_score_codex":0.0000074072123,"about_ca_system_score_gemma":0.000030239818,"threshold_uncertainty_score":0.39607912},"labels":[],"label_agreement":null},{"id":"W2030519994","doi":"10.1016/j.pep.2010.05.005","title":"Production and purification of the penicillin-binding protein 3 from Pseudomonas aeruginosa","year":2010,"lang":"en","type":"article","venue":"Protein Expression and Purification","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Peptidoglycan; Penicillin binding proteins; Biochemistry; Pseudomonas aeruginosa; Escherichia coli; Glycan; Lipid II; Biology; Bacterial cell structure; Bacterial outer membrane; Cell wall; Microbiology; Bacteria; Chemistry; Gene","score_opus":0.009351723951580229,"score_gpt":0.22271704576314266,"score_spread":0.21336532181156243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030519994","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971539,0.00025222165,0.00018059932,0.0012854512,0.00017569694,0.00086917594,0.00002022678,0.000013396401,0.000049380305],"genre_scores_gemma":[0.9951311,0.00011805011,0.0039824094,0.00001128481,0.00017450195,0.00013404926,0.000059730206,0.000012178207,0.00037669836],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991063,0.000068428206,0.00021985982,0.00038483547,0.000107549175,0.00011304292],"domain_scores_gemma":[0.9991907,0.0000042170773,0.00022070728,0.00046071783,0.00008296502,0.00004072538],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002012886,0.00011939397,0.00009859001,0.000035134337,0.00014348929,0.000027957829,0.00015612584,0.000291709,0.000012450622],"category_scores_gemma":[0.00015383582,0.00008706722,0.000028983906,0.000075082266,0.00017399956,0.000008217528,0.00010041417,0.00017027256,0.000001577866],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051523035,0.000037853108,0.00057572563,0.000018880393,0.0000053340937,3.5803698e-8,0.00004392594,2.269518e-7,0.99008524,0.00025595984,0.00003754051,0.008887738],"study_design_scores_gemma":[0.00017559135,0.00005059769,0.004402689,0.000048157086,0.000008362058,0.0000032613402,0.00003683349,0.00001897041,0.9881946,0.00041903614,0.0065325866,0.00010934666],"about_ca_topic_score_codex":0.00002442745,"about_ca_topic_score_gemma":0.000018900006,"teacher_disagreement_score":0.0087783905,"about_ca_system_score_codex":0.0000031554769,"about_ca_system_score_gemma":0.00002864623,"threshold_uncertainty_score":0.35504982},"labels":[],"label_agreement":null},{"id":"W2030874894","doi":"10.1016/j.bpj.2009.12.308","title":"Increasing Chloride Conductance Through the SecY Complex By Mutagenesis or Trivalent Cations","year":2010,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Conductance; Chemistry; Chloride; Asparagine; Mutagenesis; Crystallography; Inorganic chemistry; Biophysics; Amino acid; Biochemistry; Mutation; Organic chemistry; Biology","score_opus":0.022543505268967666,"score_gpt":0.276937226396812,"score_spread":0.25439372112784436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030874894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953234,0.00005437368,0.0005366751,0.003220215,0.0005544791,0.00010838374,0.00005323166,0.000011593498,0.00013764588],"genre_scores_gemma":[0.9958874,0.00026276024,0.0014584949,0.0005527464,0.0015416011,0.000007986116,0.000044368953,0.000018826398,0.00022580595],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909186,0.000063947635,0.0002279061,0.00022572603,0.00012797146,0.0002626006],"domain_scores_gemma":[0.9993218,0.000024782994,0.0001367954,0.00033302244,0.0000974857,0.000086082815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013014801,0.00015378975,0.00014532363,0.000014716872,0.0003254177,0.00008543597,0.0004088599,0.00019147768,0.000088419896],"category_scores_gemma":[0.000102987986,0.000092866874,0.000107317144,0.00011408386,0.00027985766,0.0000054820816,0.0001148572,0.00034190112,0.000014628247],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013791256,0.0000868766,0.00004961126,0.0000023622479,0.000040566214,0.0000032047615,0.000019338499,9.785821e-7,0.9945067,0.00028900153,0.0034688453,0.0013945583],"study_design_scores_gemma":[0.00033196554,0.00017802177,0.001159107,0.0000032669038,0.000024220342,0.00033793136,0.00004434747,0.000021367072,0.78425676,0.000111445894,0.21339022,0.00014134712],"about_ca_topic_score_codex":0.000035237757,"about_ca_topic_score_gemma":0.000027665847,"teacher_disagreement_score":0.21024998,"about_ca_system_score_codex":0.000009717052,"about_ca_system_score_gemma":0.00008663958,"threshold_uncertainty_score":0.3787001},"labels":[],"label_agreement":null},{"id":"W2030956216","doi":"10.1074/jbc.m109.010215","title":"The Wall Teichoic Acid Polymerase TagF Is Non-processive in Vitro and Amenable to Study Using Steady State Kinetic Analysis","year":2009,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Teichoic acid; Biochemistry; Enzyme; Bacillus subtilis; Substrate (aquarium); Polymerase; Chemistry; Biophysics; Biology; Bacteria","score_opus":0.011348159927888877,"score_gpt":0.26346731198874973,"score_spread":0.25211915206086083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030956216","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979965,0.0012339603,0.000107538835,0.0004760345,0.000026275024,0.00012254406,0.000011379469,0.0000027706,0.00002299949],"genre_scores_gemma":[0.9984478,0.00038498506,0.0005906363,0.00041740702,0.00009363311,0.0000026994874,0.0000057760967,0.00000603541,0.00005106277],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874073,0.00006114231,0.0004761164,0.0003002802,0.00011709854,0.0003046245],"domain_scores_gemma":[0.999212,0.000020321906,0.00028012716,0.00023497888,0.00011672731,0.0001357986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003738762,0.00018890294,0.00034474753,0.000060097416,0.00008336303,0.000044137032,0.00033743208,0.00025931356,0.000011440454],"category_scores_gemma":[0.00011883681,0.00011565273,0.000114329094,0.00037321725,0.000083664585,0.00000337498,0.00012363355,0.0002687789,4.5802477e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045241506,0.00017718809,0.0027629058,0.0000031876189,0.00016152282,0.000025707763,0.0000651056,0.000024916695,0.99199325,8.651688e-8,0.000011285444,0.004322408],"study_design_scores_gemma":[0.0006376343,0.0010031525,0.010875153,0.00000670873,0.00009021693,0.00003905437,0.0003337706,0.00005681418,0.9864329,0.00006949337,0.0002931436,0.00016194911],"about_ca_topic_score_codex":0.000012988131,"about_ca_topic_score_gemma":0.0000045688444,"teacher_disagreement_score":0.008112248,"about_ca_system_score_codex":0.00002668667,"about_ca_system_score_gemma":0.000050509745,"threshold_uncertainty_score":0.47161815},"labels":[],"label_agreement":null},{"id":"W2031265408","doi":"10.1074/jbc.m608164200","title":"The C-terminal Domain of the Escherichia coli WaaJ Glycosyltransferase Is Important for Catalytic Activity and Membrane Association","year":2006,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Escherichia coli; Glycosyltransferase; Biochemistry; C-terminus; Glucosyltransferase; Enzyme; Biology; In vivo; N-terminus; Amino acid; Chemistry; Gene; Peptide sequence; Genetics","score_opus":0.006530771153946386,"score_gpt":0.21850556539727428,"score_spread":0.2119747942433279,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031265408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978829,0.00053289335,0.00006311547,0.0012105341,0.00009491076,0.00010449903,0.00006106135,0.0000017806641,0.000048309677],"genre_scores_gemma":[0.9988357,0.0005111685,0.00018470641,0.000060008726,0.00026291507,0.0000040167465,0.000007834968,0.00000557087,0.00012811228],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99919915,0.000032992783,0.00035343354,0.00013850575,0.000101469406,0.00017443081],"domain_scores_gemma":[0.9991719,0.000057625264,0.00045737092,0.00015570769,0.00012127792,0.00003611317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004111493,0.000113805145,0.00019101737,0.0000056741087,0.00010046923,0.00001867863,0.0002309435,0.00036359468,0.0000044484814],"category_scores_gemma":[0.0001520368,0.000058596943,0.00016950308,0.000051351573,0.00017305157,0.000002091458,0.00006202589,0.00015688501,6.368165e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029438362,0.000058540056,0.0022797044,0.000019730964,0.000047998506,0.0000015189022,0.0000035227968,6.181996e-7,0.9965923,0.00001128111,0.00025309797,0.00043729614],"study_design_scores_gemma":[0.00051985437,0.00024937972,0.0065585123,0.000008795693,0.000032136144,0.000054228152,0.00001751933,0.000008298597,0.98329526,0.00041139737,0.00876503,0.00007959489],"about_ca_topic_score_codex":0.0000072196103,"about_ca_topic_score_gemma":0.000007731271,"teacher_disagreement_score":0.013297054,"about_ca_system_score_codex":0.000023059778,"about_ca_system_score_gemma":0.00006902441,"threshold_uncertainty_score":0.28043753},"labels":[],"label_agreement":null},{"id":"W2031350952","doi":"10.1139/w04-076","title":"Role of glutamine synthetase in phenazine antibiotic production by<i>Pantoea agglomerans</i>Eh1087","year":2004,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pantoea agglomerans; Glutamine synthetase; Phenazine; Microbiology; Pantoea; Antibiotics; Biology; Glutamine; Bacteria; Chemistry; Biochemistry; Amino acid; Genetics; Pseudomonas","score_opus":0.0030047738256052644,"score_gpt":0.1770022653110903,"score_spread":0.17399749148548505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031350952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99313307,0.0052651167,0.00002961789,0.00089595024,0.00038542243,0.00010591568,0.00013926355,0.0000016188026,0.000044052085],"genre_scores_gemma":[0.99873024,0.00047186206,0.0004034756,0.00010827891,0.00014563878,6.024241e-7,0.000087221335,0.00001535406,0.00003732028],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894136,0.000053742246,0.00044178477,0.00021200826,0.000025677798,0.00032541435],"domain_scores_gemma":[0.9992705,0.000003944666,0.00024837727,0.00020563496,0.00013009168,0.0001414723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021262954,0.0001454991,0.00029523388,0.00022630373,0.00003210916,0.0000065210133,0.00025833803,0.00032701707,0.000019899047],"category_scores_gemma":[0.00009994514,0.00013413114,0.00008423337,0.00015549285,0.00027658555,0.0000039474894,0.000022323955,0.00017088669,0.0000033601211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061387575,0.000052672487,0.0011091824,0.0000114355225,0.000044678192,0.000014844996,0.000037026635,0.00008059803,0.99619526,0.000022838614,0.00042701105,0.0019430545],"study_design_scores_gemma":[0.0007179589,0.00061020575,0.00095211755,0.00004687577,0.000019466197,0.00070460833,0.000057539208,3.52564e-7,0.9643705,0.000092794806,0.03229406,0.00013351845],"about_ca_topic_score_codex":0.0011684785,"about_ca_topic_score_gemma":0.016276099,"teacher_disagreement_score":0.03186705,"about_ca_system_score_codex":0.00005076444,"about_ca_system_score_gemma":0.0005448265,"threshold_uncertainty_score":0.90824455},"labels":[],"label_agreement":null},{"id":"W2031646634","doi":"10.1128/jb.187.12.4238-4244.2005","title":"Crystal Structure of the “PhoU-Like” Phosphate Uptake Regulator from <i>Aquifex aeolicus</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Lawrence Berkeley National Laboratory; Brookhaven National Laboratory; Basic Energy Sciences; U.S. Public Health Service; National Institutes of Health; University of Toronto; U.S. Department of Energy","keywords":"Biology; Aquifex aeolicus; Chaperone (clinical); Genetics; Peptide sequence; Biochemistry; Archaea; Escherichia coli; Gene","score_opus":0.004492370267702036,"score_gpt":0.2023004644307872,"score_spread":0.19780809416308517,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031646634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99626344,0.0011320962,0.000043219265,0.0010727876,0.0012230092,0.0000903534,0.00013141976,0.0000039661654,0.000039726146],"genre_scores_gemma":[0.99585336,0.00032610353,0.0017714257,0.00065416616,0.0012119841,6.7357826e-7,0.00002550851,0.000021940008,0.0001348206],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986449,0.00009776975,0.00066057727,0.00021984609,0.00012133199,0.00025556836],"domain_scores_gemma":[0.9985188,0.000013019602,0.00074946956,0.00045847538,0.00018161233,0.000078590274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000121838275,0.00019703098,0.00039089686,0.000050146165,0.00005174412,0.000012967532,0.00060312956,0.00053300185,0.00017315822],"category_scores_gemma":[0.000057200436,0.00012971682,0.00024356898,0.000090222966,0.00028360766,0.0000064847195,0.0002472499,0.00026771287,0.0000022424445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002703332,0.00003971656,0.0014266719,0.000004591281,0.0001289227,0.0000019125903,0.000029933635,0.00004010139,0.99203074,0.000033384746,0.0010937885,0.0048998795],"study_design_scores_gemma":[0.0007157428,0.00042320092,0.034583822,0.000015569927,0.000044907774,0.00018373875,0.00001745485,0.0000058532714,0.73966825,0.00017362248,0.2240452,0.00012260412],"about_ca_topic_score_codex":0.000015595455,"about_ca_topic_score_gemma":0.000073501156,"teacher_disagreement_score":0.2523625,"about_ca_system_score_codex":0.000019051226,"about_ca_system_score_gemma":0.00014722577,"threshold_uncertainty_score":0.5289698},"labels":[],"label_agreement":null},{"id":"W2031738351","doi":"10.1128/jb.188.5.1847-1855.2006","title":"Antibiotic Inducibility of the MexXY Multidrug Efflux System of <i>Pseudomonas aeruginosa</i> : Involvement of the Antibiotic-Inducible PA5471 Gene Product","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Efflux; Biology; Pseudomonas aeruginosa; Microbiology; Repressor; Multiple drug resistance; Mutant; Inducer; Operon; Antibacterial agent; Antibiotics; Gene; Gene expression; Genetics; Bacteria","score_opus":0.009377399654130045,"score_gpt":0.21393688549610404,"score_spread":0.204559485841974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031738351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970819,0.0006380672,0.000026638592,0.0004095806,0.0013069143,0.00038382152,0.00006938213,0.0000035492983,0.00008015755],"genre_scores_gemma":[0.9986927,0.00012870051,0.0007389411,0.000039740193,0.00033084472,8.553339e-7,0.00001088021,0.00001996828,0.000037362704],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973874,0.0003943603,0.0013272589,0.0003667704,0.00022669723,0.0002975088],"domain_scores_gemma":[0.99638903,0.000031174255,0.001935863,0.0011147882,0.00048450317,0.000044668213],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009538234,0.00024513635,0.000706245,0.00009141637,0.0000654857,0.00000725553,0.00088702847,0.00039544626,0.0000050830054],"category_scores_gemma":[0.00017123079,0.0001429632,0.0003974144,0.00025907633,0.00067231525,0.0000067002047,0.00046513224,0.0002837369,4.961114e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013275961,0.0002864283,0.06329461,0.0001976318,0.00014346954,0.0000015083489,0.000030167119,0.0000727524,0.93525857,0.00009744034,0.00013340799,0.00035125177],"study_design_scores_gemma":[0.00068458,0.0005387302,0.18776548,0.00011647677,0.00008950075,0.00013783395,0.00006519999,0.0000061179862,0.80981433,0.00002711754,0.0006467843,0.000107859996],"about_ca_topic_score_codex":0.00020023386,"about_ca_topic_score_gemma":0.000074477175,"teacher_disagreement_score":0.12544426,"about_ca_system_score_codex":0.00003997258,"about_ca_system_score_gemma":0.00030691794,"threshold_uncertainty_score":0.582987},"labels":[],"label_agreement":null},{"id":"W2032094285","doi":"10.1016/s0005-2736(02)00398-x","title":"Insertion of carrier proteins into hydrophilic loops of the Escherichia coli lactose permease","year":2002,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Lactose permease; Permease; Escherichia coli; Fusion protein; lac operon; Biochemistry; Membrane transport protein; GroEL; Chemistry; Biology; Membrane protein; Membrane; Recombinant DNA; Gene","score_opus":0.00974800676852799,"score_gpt":0.21403689995570233,"score_spread":0.20428889318717433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032094285","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968391,0.00030666988,0.0000045394413,0.0017118003,0.00023831587,0.0005556201,0.00017485034,0.000025874624,0.00014320051],"genre_scores_gemma":[0.9985306,0.00050421094,0.0002018367,0.00022247634,0.00018623314,0.00003646273,0.00008003768,0.000046661662,0.00019146403],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99823076,0.00015060559,0.00050309073,0.00053161447,0.00025071256,0.00033321668],"domain_scores_gemma":[0.99834573,0.000012839732,0.00041666074,0.0009725491,0.00015306004,0.000099157915],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000121282734,0.00034544486,0.00038684093,0.00011407623,0.00011156426,0.000024575267,0.00068362744,0.00047663375,0.0000378284],"category_scores_gemma":[0.00008009778,0.00025890078,0.0002948283,0.0005508933,0.00071715337,0.000010255004,0.0003576485,0.00017373778,0.0000066850666],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001521127,0.00040008343,0.00002197344,0.00013806274,0.000116901174,6.901435e-7,0.00018998243,0.0000025376335,0.9982918,0.000056072433,0.0001563108,0.00047347235],"study_design_scores_gemma":[0.0006038964,0.000589164,0.0035364984,0.000043525906,0.00006870413,0.000005066501,0.000043062548,0.00009786647,0.9921576,0.00008026451,0.0024669508,0.00030744314],"about_ca_topic_score_codex":0.00012635162,"about_ca_topic_score_gemma":0.00003550328,"teacher_disagreement_score":0.0061342437,"about_ca_system_score_codex":0.000018291048,"about_ca_system_score_gemma":0.00008466496,"threshold_uncertainty_score":0.99998635},"labels":[],"label_agreement":null},{"id":"W2032306041","doi":"10.1016/j.str.2007.12.006","title":"A Nice Return on the “Stalk” Exchange","year":2008,"lang":"en","type":"letter","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Health Sciences Centre","funders":"","keywords":"Nice; Stalk; Chemistry; Biology; Computer science","score_opus":0.009062826520245683,"score_gpt":0.20460741497232574,"score_spread":0.19554458845208006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032306041","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2152269,0.0022500076,0.000008430066,0.7752276,0.0022870759,0.00065748155,0.0011197138,0.000053457363,0.0031693329],"genre_scores_gemma":[0.0922034,0.001972106,0.00014107609,0.8776882,0.016553717,0.000033850363,0.0025589454,0.00013598168,0.008712704],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.998585,0.00008455442,0.0001753872,0.00057103595,0.00018802406,0.0003960094],"domain_scores_gemma":[0.9987351,0.000013554027,0.00014144967,0.0010211428,0.000058613154,0.000030159425],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000040192943,0.0003810784,0.00023562467,0.00004937259,0.00013809292,0.00003291032,0.0006425344,0.002623143,0.00023965443],"category_scores_gemma":[0.00004591297,0.0002400031,0.00015706668,0.00008853169,0.0002146433,6.053362e-7,0.00022527945,0.0013980137,0.000015387779],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020243786,0.0000030577396,0.000004399673,0.000022432117,0.000061754276,0.00004515957,0.000015385924,2.5339443e-7,0.1401252,0.000010308082,0.8589435,0.0007482845],"study_design_scores_gemma":[0.00012747724,0.00023850727,0.000047984893,0.000015088981,0.000019549547,0.00012297394,0.0000043242585,6.9544296e-7,0.094712645,0.00020071237,0.9042282,0.00028185762],"about_ca_topic_score_codex":0.000010951089,"about_ca_topic_score_gemma":0.000029132503,"teacher_disagreement_score":0.1230235,"about_ca_system_score_codex":0.000016093894,"about_ca_system_score_gemma":0.00006863006,"threshold_uncertainty_score":0.99867165},"labels":[],"label_agreement":null},{"id":"W2032664706","doi":"10.1038/nmeth.1239","title":"eSGA: E. coli synthetic genetic array analysis","year":2008,"lang":"en","type":"article","venue":"Nature Methods","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":257,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick; Canada Research Chairs; Wilfrid Laurier University; University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Computational biology; Biology; Genetics","score_opus":0.010872650319837028,"score_gpt":0.3141905482019688,"score_spread":0.30331789788213176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032664706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8962394,0.005625238,0.09518479,0.00037259297,0.00067524955,0.00018887623,0.000024699246,0.000046235487,0.0016429157],"genre_scores_gemma":[0.7335688,0.00077180425,0.26408106,0.0004259158,0.00030205672,0.000016034648,0.000048937356,0.000024489693,0.0007609471],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984255,0.00027103422,0.00025217087,0.00057625875,0.00013248279,0.00034256576],"domain_scores_gemma":[0.9988901,0.000028638104,0.00010158906,0.000766412,0.00011061988,0.00010262702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003274077,0.00022834059,0.000336045,0.00017831143,0.00013375144,0.000015453254,0.00037369406,0.0011561315,0.00007990203],"category_scores_gemma":[0.00022632777,0.00020050077,0.00028072458,0.00061985734,0.00020503478,0.0000013016011,0.00011449116,0.0003973401,0.000011827208],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036941823,0.000044884113,0.0011976812,0.000005211808,0.00038495788,0.000009059072,0.000014309138,0.000032754688,0.9889983,0.000054670934,0.00067631924,0.008544935],"study_design_scores_gemma":[0.0002045317,0.0001632775,0.018845877,0.0000021308917,0.00024407441,0.000067824556,0.000007714288,0.000039398394,0.7998872,0.00013055046,0.18015207,0.00025535026],"about_ca_topic_score_codex":0.000009534103,"about_ca_topic_score_gemma":0.0000144652,"teacher_disagreement_score":0.18911108,"about_ca_system_score_codex":0.000013239843,"about_ca_system_score_gemma":0.0000663297,"threshold_uncertainty_score":0.89171445},"labels":[],"label_agreement":null},{"id":"W2032985706","doi":"10.1111/j.1574-6968.2000.tb09002.x","title":"A second<i>tonB</i>gene in<i>Pseudomonas aeruginosa</i>is linked to the<i>exbB</i>and<i>exbD</i>genes","year":2000,"lang":"he","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Medical Research Council; Cystic Fibrosis Foundation","keywords":"Biology; Complementation; Hemin; Gene; Escherichia coli; Mutant; Pseudomonas aeruginosa; Microbiology; Molecular biology; Genetics; Heme; Bacteria; Biochemistry","score_opus":0.005016798273792323,"score_gpt":0.19681337704976834,"score_spread":0.19179657877597603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032985706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91424406,0.007798145,0.00003300554,0.07432379,0.0013947244,0.0010241542,0.0008398894,0.000043175176,0.000299057],"genre_scores_gemma":[0.92433846,0.005493627,0.00079643825,0.063942246,0.0012655355,0.00011140688,0.00059509627,0.00011480564,0.0033423842],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9950444,0.00040140506,0.0009853625,0.0018443116,0.000130496,0.0015940286],"domain_scores_gemma":[0.99789613,0.000056942605,0.00022626897,0.0014195385,0.00011601839,0.00028506856],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00062244677,0.000930846,0.0008623902,0.00023380209,0.0003244751,0.00013165928,0.0012369825,0.0015949978,0.001191181],"category_scores_gemma":[0.00004263449,0.00080068794,0.00030803296,0.00049263303,0.0012342101,0.000010213855,0.00066634873,0.0007911342,0.00076407345],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003772386,0.00012013018,0.00089836615,0.000032168926,0.00022536589,0.000047906895,0.00046116923,0.000039104172,0.9373539,0.000013217935,0.041727778,0.018703645],"study_design_scores_gemma":[0.0011675166,0.00038847903,0.0016817693,0.000036841444,0.000058385587,0.00031528974,0.000054272048,0.000006693469,0.3567517,0.000012401925,0.63882154,0.00070507644],"about_ca_topic_score_codex":0.00027149814,"about_ca_topic_score_gemma":0.0012544685,"teacher_disagreement_score":0.59709376,"about_ca_system_score_codex":0.00006693277,"about_ca_system_score_gemma":0.00015563352,"threshold_uncertainty_score":0.9997219},"labels":[],"label_agreement":null},{"id":"W2033052361","doi":"10.1016/j.str.2012.04.014","title":"A Protein Export Pathway Involving Escherichia coli Porins","year":2012,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of Alberta; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Escherichia coli; Chemistry; Escherichia coli Proteins; Microbiology; Biochemistry; Biology; Gene","score_opus":0.007255170235365598,"score_gpt":0.21132733630392153,"score_spread":0.20407216606855594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033052361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977459,0.0008878159,0.000048577294,0.00010442745,0.0004464981,0.00021785058,0.00004483205,0.00002659143,0.00047752663],"genre_scores_gemma":[0.99571496,0.000029235822,0.0025335057,0.00019211316,0.00089553284,0.000016594113,0.000114116134,0.000026029826,0.0004778898],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913174,0.000026147323,0.00014901916,0.00023814304,0.00008350205,0.00037145996],"domain_scores_gemma":[0.999427,0.000001148913,0.000075234566,0.00035182916,0.000041153555,0.00010358761],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006804679,0.00016870021,0.00012672145,0.000026991567,0.00006978501,0.000018588726,0.00018348615,0.0004201195,0.00007663077],"category_scores_gemma":[0.00003463278,0.00014470669,0.000054991284,0.00008759524,0.00006888553,0.000003446379,0.00016011481,0.00015004873,0.0000069569865],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020175095,0.000019971121,0.002161395,0.000010902143,0.000022354432,0.0000011746428,0.000035341272,3.3041067e-7,0.9952664,0.000756453,0.0002582865,0.0014472195],"study_design_scores_gemma":[0.00019384717,0.00010691918,0.011958394,0.000005247161,0.0000062552604,0.000012616596,0.00004482699,0.0000013853086,0.8702731,0.00019365377,0.11701174,0.00019199276],"about_ca_topic_score_codex":0.000008417939,"about_ca_topic_score_gemma":0.000015885355,"teacher_disagreement_score":0.12499327,"about_ca_system_score_codex":0.000010130265,"about_ca_system_score_gemma":0.0000578108,"threshold_uncertainty_score":0.5900968},"labels":[],"label_agreement":null},{"id":"W2033065712","doi":"10.1371/journal.pone.0019172","title":"Proteomic Analyses of Nucleoid-Associated Proteins in Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis, and Staphylococcus aureus","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ichiro Kanehara Foundation for the Promotion of Medical Sciences and Medical Care; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Nucleoid; Bacillus subtilis; Escherichia coli; Biology; Staphylococcus aureus; Bacteria; Biochemistry; Microbiology; Genetics; Gene","score_opus":0.04017610862276968,"score_gpt":0.23473964395057892,"score_spread":0.19456353532780923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033065712","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984153,0.00043308144,0.000011407801,0.00006133473,0.000020919117,0.0007176269,0.000059570208,0.000017979031,0.00026279315],"genre_scores_gemma":[0.99547076,0.00041169827,0.0038192952,0.00004262824,0.00003802554,0.00007305047,0.000040768664,0.000024269199,0.00007950297],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987939,0.00007816897,0.00032738794,0.0003769456,0.00012864402,0.00029493307],"domain_scores_gemma":[0.9992838,0.0000044389813,0.00018189012,0.00034889823,0.00011057546,0.00007040981],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015242334,0.00019339852,0.0003476665,0.00009844663,0.000035387537,0.000010817891,0.00021715488,0.00040200958,0.000039425384],"category_scores_gemma":[0.0001231859,0.00018573277,0.000053990774,0.00020193782,0.00019267786,0.0000037703583,0.00017642086,0.00014962607,0.0000029878777],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018430254,0.0010723297,0.009371755,0.000046565023,0.00025973006,0.0000037122932,0.00007597284,4.6117626e-7,0.9887697,0.000021754584,0.000013020887,0.00018066958],"study_design_scores_gemma":[0.00075809506,0.00077022397,0.07278608,0.000043441734,0.00006900411,3.9024698e-7,0.000027117127,0.000029799945,0.92518574,0.00009192051,0.000038315604,0.00019985647],"about_ca_topic_score_codex":0.00036951632,"about_ca_topic_score_gemma":0.0002846439,"teacher_disagreement_score":0.06358397,"about_ca_system_score_codex":0.000016169311,"about_ca_system_score_gemma":0.00007156208,"threshold_uncertainty_score":0.7573963},"labels":[],"label_agreement":null},{"id":"W2033241765","doi":"10.1111/j.1348-0421.2000.tb02578.x","title":"Molecular Analysis of the <i>folC</i> Gene of <i>Pseudomonas aeruginosa</i>","year":2000,"lang":"en","type":"article","venue":"Microbiology and Immunology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Gene; Biology; Pseudomonas aeruginosa; Genetics; Escherichia coli; Nucleic acid sequence; Coding region; Gene cluster; Molecular biology; Bacteria","score_opus":0.0025159274654322945,"score_gpt":0.17951818412440557,"score_spread":0.17700225665897326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033241765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945522,0.0045147715,0.00004014192,0.00026118374,0.00012433635,0.000113048765,0.00012143103,0.0000053450185,0.0002675699],"genre_scores_gemma":[0.99788564,0.0012339816,0.00022374906,0.00032147215,0.000016101587,0.0000054862635,0.0001310835,0.000009504655,0.00017297274],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895555,0.00013872936,0.00033134886,0.0003173532,0.000022275504,0.00023475771],"domain_scores_gemma":[0.99922603,0.000011907198,0.00014678364,0.0005376336,0.000059467722,0.000018203391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010568415,0.00015756658,0.000379987,0.00009237377,0.000053100728,0.0000025485965,0.0003548268,0.00051009463,0.00009500701],"category_scores_gemma":[0.000016380041,0.000118063304,0.0001982288,0.0003209675,0.0009403688,0.0000013299355,0.00020323777,0.0001186483,0.0000023277282],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014093565,0.00005663512,0.0017505126,0.000004773948,0.0010594736,0.0000010566602,0.000018726143,0.000036003865,0.99397224,0.00020206763,0.00006318836,0.0026943826],"study_design_scores_gemma":[0.00041921547,0.00030475503,0.006766886,0.0000033004892,0.00030415945,0.00007639103,0.000010421737,0.000003911289,0.9728966,0.00004126766,0.019054715,0.00011839924],"about_ca_topic_score_codex":0.00003418493,"about_ca_topic_score_gemma":0.000030942887,"teacher_disagreement_score":0.021075666,"about_ca_system_score_codex":0.0000033568276,"about_ca_system_score_gemma":0.000035683475,"threshold_uncertainty_score":0.4814482},"labels":[],"label_agreement":null},{"id":"W2033488273","doi":"10.1016/j.jmb.2008.04.045","title":"Novel Structure of the Conserved Gram-Negative Lipopolysaccharide Transport Protein A and Mutagenesis Analysis","year":2008,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":169,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Brookhaven National Laboratory","keywords":"Periplasmic space; Biology; Bacterial outer membrane; Transport protein; Antiparallel (mathematics); Cell biology; Biochemistry; Chemistry; Escherichia coli; Gene","score_opus":0.007402570768995863,"score_gpt":0.22258489525020908,"score_spread":0.21518232448121322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033488273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99238706,0.0005770395,0.0062391474,0.0004599415,0.00009689953,0.00015320639,0.00007773277,0.0000021874857,0.0000068124655],"genre_scores_gemma":[0.9952558,0.00014847337,0.0043601245,0.00012421493,0.00006481033,0.0000017135329,0.000010351634,0.000012023361,0.000022436754],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989279,0.0001250203,0.000453822,0.00021651541,0.000099830686,0.00017694048],"domain_scores_gemma":[0.9989101,0.000009709951,0.00050550164,0.0002912208,0.00022218665,0.00006127958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014400232,0.00016557233,0.00039678212,0.00013315436,0.00006134094,0.0000034531208,0.00032442313,0.00037269082,0.000011136954],"category_scores_gemma":[0.00010514655,0.0001100489,0.00030963932,0.00023975453,0.00050494005,0.000002207822,0.000092838636,0.0001702482,8.2921495e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011549687,0.000037884456,0.009721789,0.000008251971,0.00080887106,0.00000991525,0.000032231503,0.00003326452,0.98879915,0.00011613156,0.000004259245,0.00031277517],"study_design_scores_gemma":[0.0006427003,0.00050898653,0.021953514,0.000008054916,0.00029221695,0.0003094685,0.0000235591,0.0000057930756,0.97556686,0.0002571843,0.0003132643,0.00011840412],"about_ca_topic_score_codex":0.000070436196,"about_ca_topic_score_gemma":0.00010450011,"teacher_disagreement_score":0.013232276,"about_ca_system_score_codex":0.0000067639153,"about_ca_system_score_gemma":0.00013210968,"threshold_uncertainty_score":0.4487664},"labels":[],"label_agreement":null},{"id":"W2033507368","doi":"10.1073/pnas.0407371101","title":"Structure and function of the phenazine biosynthetic protein PhzF from <i>Pseudomonas fluorescens</i>","year":2004,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; National Institutes of Health; European Synchrotron Radiation Facility; Deutsche Forschungsgemeinschaft","keywords":"Phenazine; Pyocyanin; Stereochemistry; Chromobacterium violaceum; Pseudomonas fluorescens; Chemistry; Biochemistry; Isomerase; Biology; Virulence; Enzyme; Bacteria; Quorum sensing","score_opus":0.010548955757567844,"score_gpt":0.22703964305370644,"score_spread":0.2164906872961386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033507368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970762,0.00021435278,0.0000012193398,0.0023700893,0.000026469786,0.00015655212,0.00005505708,0.0000021490307,0.000097883436],"genre_scores_gemma":[0.998868,0.0000414407,0.00088535255,0.000108838736,0.00007158663,0.0000024361166,5.097644e-7,0.0000030285419,0.00001880949],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925596,0.000004309131,0.00017624094,0.00018910007,0.00029037197,0.00008402933],"domain_scores_gemma":[0.9995891,0.0000051538436,0.00025552412,0.000015122621,0.0001212073,0.000013890345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017409997,0.00007407229,0.00009080547,0.000031333955,0.000083364816,0.0000078125395,0.00041337224,0.00015903586,0.0000032828004],"category_scores_gemma":[0.000107415435,0.0000410859,0.00004448815,0.00021134083,0.0008932123,0.000007187435,0.0001619158,0.00008425801,8.5583174e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024396822,0.000015942169,0.00074141246,0.000014775415,0.000011795567,6.576648e-10,0.000015478276,0.000016448234,0.9960097,0.0027566438,0.000026743466,0.00036666996],"study_design_scores_gemma":[0.00018813394,0.000086971835,0.024883222,0.000042198288,0.000011242813,0.0000025764386,0.00001967124,0.000010037987,0.94443864,0.029967602,0.00030380266,0.000045911234],"about_ca_topic_score_codex":0.000009608072,"about_ca_topic_score_gemma":5.697019e-7,"teacher_disagreement_score":0.051571064,"about_ca_system_score_codex":0.000005413508,"about_ca_system_score_gemma":0.000026334463,"threshold_uncertainty_score":0.3291078},"labels":[],"label_agreement":null},{"id":"W2033872945","doi":"10.1021/sb400142b","title":"Universal Genetic Assay for Engineering Extracellular Protein Expression","year":2013,"lang":"en","type":"article","venue":"ACS Synthetic Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Great Lakes Bioenergy Research Center; National Institute of Food and Agriculture; Petroleum Technology Research Centre; U.S. Department of Energy","keywords":"Secretion; Synthetic biology; Escherichia coli; Secretory protein; Protein engineering; Metabolic engineering; Biology; Extracellular; Fusion protein; Computational biology; Green fluorescent protein; Recombinant DNA; High-throughput screening; Directed evolution; Secretory pathway; Cell biology; Biochemistry; Cell; Gene; Enzyme; Mutant","score_opus":0.005753903352248145,"score_gpt":0.19540288378718101,"score_spread":0.18964898043493286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033872945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.958609,0.00088085915,0.03875072,0.00049740094,0.00028873756,0.0008122871,0.000024904632,0.000044729608,0.00009139966],"genre_scores_gemma":[0.9815036,0.000069291826,0.017173195,0.000053579297,0.00025033203,0.00024724196,0.00008493674,0.000039779712,0.0005780091],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987123,0.000062690364,0.00023950734,0.0004970259,0.000044976045,0.00044352544],"domain_scores_gemma":[0.9992573,0.000025166173,0.00008775816,0.00045555137,0.0000884215,0.00008577367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013738616,0.00022347814,0.0002011642,0.000067646295,0.00007081227,0.000022282464,0.00033455587,0.0006345466,0.000081924234],"category_scores_gemma":[0.00013972781,0.00019760059,0.000090591835,0.000059619328,0.0001300718,0.000003102143,0.0001784661,0.000108466484,0.000039945062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023240138,0.00003559686,0.000087967586,0.000015817108,0.000026181699,7.768091e-7,0.0000063194266,0.000013948854,0.9891635,0.0006168743,0.00029380442,0.009715964],"study_design_scores_gemma":[0.0003638907,0.00045862803,0.00018745747,0.000015072181,0.00001279799,0.000016659325,0.000016050742,0.00025848736,0.8840824,0.0004944684,0.113838464,0.00025562817],"about_ca_topic_score_codex":0.000020603213,"about_ca_topic_score_gemma":0.0000028504157,"teacher_disagreement_score":0.11354466,"about_ca_system_score_codex":0.00001275983,"about_ca_system_score_gemma":0.000038626145,"threshold_uncertainty_score":0.8057918},"labels":[],"label_agreement":null},{"id":"W2034390841","doi":"10.1016/j.jmb.2013.01.019","title":"Domain Swapping in the Cytoplasmic Domain of the Escherichia coli Rhomboid Protease","year":2013,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Escherichia coli; Rhomboid; Domain (mathematical analysis); Computational biology; Protease; Cytoplasm; Escherichia coli Proteins; Chemistry; Biology; Microbiology; Genetics; Biochemistry; Proteases; Enzyme; Gene","score_opus":0.00494171085884089,"score_gpt":0.2219277492044946,"score_spread":0.2169860383456537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034390841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99382997,0.0006934964,0.0017090017,0.0028564006,0.00026181998,0.00041542324,0.0000055800265,0.0000017626464,0.00022654743],"genre_scores_gemma":[0.9951784,0.00010366356,0.0037055833,0.0008274284,0.00013107444,0.000020151887,0.0000039252413,0.000013651442,0.000016118538],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99841356,0.00045773902,0.0005311549,0.00018229714,0.00014423848,0.00027102968],"domain_scores_gemma":[0.9988614,0.000018499983,0.00047682395,0.00041921836,0.00018115329,0.00004292542],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071545184,0.0001631962,0.00026966975,0.00007657258,0.000048384853,0.000016637048,0.00077943475,0.0003607481,0.000021981856],"category_scores_gemma":[0.0001313486,0.00009133583,0.00020208769,0.00020626484,0.00030057586,0.0000033020895,0.0001916264,0.00032413675,0.0000037233833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005792213,0.000079559235,0.0013823613,0.000009293011,0.00005411994,0.0000074446666,0.000057839683,0.000010944931,0.9967258,0.0007868616,0.00033705417,0.0004908035],"study_design_scores_gemma":[0.0011060442,0.000978519,0.00912118,0.0000346352,0.000022906372,0.0002030881,0.00029399406,0.0000037879468,0.9484944,0.008296584,0.031267863,0.00017704128],"about_ca_topic_score_codex":0.000027547154,"about_ca_topic_score_gemma":0.000018369794,"teacher_disagreement_score":0.048231438,"about_ca_system_score_codex":0.000018454984,"about_ca_system_score_gemma":0.00016136885,"threshold_uncertainty_score":0.37245673},"labels":[],"label_agreement":null},{"id":"W2034406819","doi":"10.1016/j.bbapap.2015.03.012","title":"Structural and evolutionary divergence of cyclic nucleotide binding domains in eukaryotic pathogens: Implications for drug design","year":2015,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium; University of Toronto","funders":"National Cancer Institute","keywords":"Biology; Computational biology; Functional divergence; Cyclic nucleotide-binding domain; Architecture domain; Structural similarity; Protein domain; Drug discovery; Genetics; Genome; Gene; Nucleotide; Bioinformatics; Biochemistry; Gene family","score_opus":0.023794663017570074,"score_gpt":0.25212929056135785,"score_spread":0.22833462754378778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034406819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954266,0.00028344642,0.00095696707,0.0011691219,0.00006955243,0.0017320884,0.00033779687,0.000015756868,0.000008697319],"genre_scores_gemma":[0.9606751,0.00044126782,0.03835731,0.00005571178,0.00009350973,0.0002015355,0.00012795055,0.00002898029,0.000018613475],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986955,0.00009096137,0.00033866547,0.0005008771,0.000077148055,0.00029688462],"domain_scores_gemma":[0.99921834,0.000021988295,0.00021248839,0.00033145057,0.000100221325,0.00011548246],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024431534,0.00023895898,0.00026400483,0.00010105834,0.00011251825,0.00003272909,0.00022832704,0.0002316291,7.7816924e-7],"category_scores_gemma":[0.0000903983,0.00022128808,0.0000652346,0.00016495332,0.00027575932,0.000014371282,0.00027292332,0.000117909556,4.8459293e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024947344,0.000053808402,0.00045919264,0.000046831938,0.000033575056,3.5460397e-7,0.00010312913,0.000012837164,0.9979592,0.00054116774,0.00005930721,0.00048114875],"study_design_scores_gemma":[0.0009335429,0.0006432723,0.025516197,0.000035445548,0.00003129822,0.000013687287,0.00006408348,0.00026480254,0.9676498,0.0044303657,0.00010512431,0.00031237834],"about_ca_topic_score_codex":0.00004273581,"about_ca_topic_score_gemma":0.000019060933,"teacher_disagreement_score":0.037400343,"about_ca_system_score_codex":0.00002270389,"about_ca_system_score_gemma":0.00013979727,"threshold_uncertainty_score":0.9023866},"labels":[],"label_agreement":null},{"id":"W2034724021","doi":"10.1111/j.1574-6968.2000.tb09219.x","title":"<i>Pseudomonas aeruginosa</i>B-band lipopolysaccharide genes<i>wbpA</i>and<i>wbpI</i>and their<i>Escherichia coli</i>homologues<i>wecC</i>and<i>wecB</i>are not functionally interchangeable","year":2000,"lang":"he","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Toronto General Hospital; University of Toronto","funders":"University of Guelph","keywords":"Escherichia coli; Pseudomonas aeruginosa; Microbiology; Lipopolysaccharide; Gene; Pseudomonas; Biology; Chemistry; Genetics; Bacteria; Immunology","score_opus":0.008118684926130213,"score_gpt":0.18948698605929273,"score_spread":0.18136830113316252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034724021","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9553017,0.020910427,0.00017429721,0.019502712,0.0016309677,0.00093743077,0.0012299289,0.00011345492,0.00019910545],"genre_scores_gemma":[0.93857545,0.02584222,0.0008734982,0.030353859,0.0014078112,0.00011886974,0.00078480045,0.0001938764,0.0018496001],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9937897,0.00056623603,0.001139105,0.0025832527,0.00013743536,0.0017843082],"domain_scores_gemma":[0.9975437,0.00014475777,0.00052699016,0.001121221,0.00016662876,0.0004967243],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.00066089287,0.0015133306,0.0014526959,0.00026368006,0.00068040163,0.0002421698,0.00078944204,0.0022867536,0.00031775],"category_scores_gemma":[0.00005627614,0.0014043368,0.00033296229,0.00025869015,0.0035690588,0.000036659825,0.00085884635,0.0011681388,0.00013842696],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00096766336,0.00018798305,0.0016141749,0.00013450917,0.0006785428,0.00005479497,0.00032674428,0.000008986142,0.97813684,0.000090240865,0.00841043,0.009389083],"study_design_scores_gemma":[0.0024913687,0.0009952317,0.0010901896,0.00012575088,0.00023359012,0.0011806653,0.00019464004,0.000018976365,0.61272913,0.000057626927,0.3794854,0.0013974243],"about_ca_topic_score_codex":0.0004745352,"about_ca_topic_score_gemma":0.00068674126,"teacher_disagreement_score":0.37107497,"about_ca_system_score_codex":0.000073491916,"about_ca_system_score_gemma":0.00016337133,"threshold_uncertainty_score":0.9997616},"labels":[],"label_agreement":null},{"id":"W2035056781","doi":"10.1111/j.1574-6968.2002.tb11014.x","title":"<i>Salmonella typhimurium</i>DsbA is growth-phase regulated","year":2002,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research","keywords":"DsbA; Transcription (linguistics); Primer extension; Promoter; Molecular biology; Western blot; Biology; rpoS; Transcription factor; Chemistry; Gene expression; Gene; Genetics; Escherichia coli; Messenger RNA","score_opus":0.008143921082468785,"score_gpt":0.20507260868224467,"score_spread":0.1969286875997759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035056781","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98866993,0.0010069954,0.00012800848,0.008806251,0.00066540134,0.00020672023,0.00012195893,0.00006047687,0.0003342578],"genre_scores_gemma":[0.9843239,0.000513257,0.00059276033,0.012604803,0.00042365515,0.000014889376,0.00040294408,0.00004869122,0.001075056],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983056,0.00007937672,0.0003245537,0.00068793737,0.000040021074,0.0005624635],"domain_scores_gemma":[0.9991232,0.000008633746,0.00012993356,0.0005820961,0.0000672968,0.000088822155],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000098505116,0.0003128753,0.00027320808,0.00009727327,0.00011229635,0.000024256657,0.00042706856,0.00068974437,0.0003453977],"category_scores_gemma":[0.00002554211,0.00029865914,0.00015089448,0.00016064606,0.0003898873,0.0000029428008,0.00020356053,0.00021610016,0.0002968086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056471432,0.00010348236,0.00018954556,0.00000577498,0.0000894742,0.000014694223,0.000029149496,0.0000014183856,0.8631047,0.000014358567,0.13547811,0.0009128161],"study_design_scores_gemma":[0.0011790356,0.00032837817,0.000100439756,0.0000058180544,0.00002230329,0.00017560062,0.0000057914076,0.000012544585,0.7570425,0.000014345449,0.2407893,0.00032394895],"about_ca_topic_score_codex":0.000014149307,"about_ca_topic_score_gemma":0.0000055288933,"teacher_disagreement_score":0.10606221,"about_ca_system_score_codex":0.000016648075,"about_ca_system_score_gemma":0.000011264087,"threshold_uncertainty_score":0.99994653},"labels":[],"label_agreement":null},{"id":"W2035318200","doi":"10.1021/bi062198r","title":"Structure and Function of Transmembrane Segment XII in Osmosensor and Osmoprotectant Transporter ProP of <i>Escherichia coli</i>","year":2007,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Escherichia coli; Transporter; Function (biology); Chemistry; Transmembrane protein; Escherichia coli Proteins; Osmoprotectant; Biochemistry; Biology; Microbiology; Computational biology; Genetics; Gene; Amino acid","score_opus":0.003991130483975212,"score_gpt":0.19268578695448194,"score_spread":0.18869465647050673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035318200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99853665,0.00086639787,0.00019141361,0.0000590557,0.00003450475,0.00019296102,0.00006283635,0.0000046166747,0.00005155781],"genre_scores_gemma":[0.9988658,0.00017742955,0.000777629,0.000035822406,0.000045167577,0.000003436063,0.00004495821,0.0000120796485,0.000037703216],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991776,0.000009392406,0.00029124625,0.00027997038,0.00007501657,0.00016679196],"domain_scores_gemma":[0.9996316,0.0000036718202,0.000096827505,0.00018020695,0.000039740047,0.000047951842],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000118717115,0.0001413856,0.00018922651,0.000030541465,0.000014879497,0.0000034761413,0.000068073976,0.0003879958,0.000008069311],"category_scores_gemma":[0.000008028145,0.00012930064,0.000033299053,0.000084463936,0.0001806895,0.0000015351583,0.000024824636,0.00009753514,3.807055e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045549768,0.00005096027,0.0018588009,0.0002597067,0.00002635949,0.0000020456225,0.000029533567,8.3025117e-7,0.9939113,0.000006962616,0.0000059452514,0.0033920582],"study_design_scores_gemma":[0.00079875824,0.00030753514,0.01660119,0.000035122343,0.000020551382,0.00001043874,0.000048629234,0.0000036518472,0.981607,0.000029323828,0.00040456204,0.00013323328],"about_ca_topic_score_codex":0.000012312285,"about_ca_topic_score_gemma":0.00002908457,"teacher_disagreement_score":0.014742388,"about_ca_system_score_codex":0.0000051310467,"about_ca_system_score_gemma":0.000032659696,"threshold_uncertainty_score":0.5272727},"labels":[],"label_agreement":null},{"id":"W2035903935","doi":"10.1016/j.sbi.2013.07.008","title":"Fortifying the wall: synthesis, regulation and degradation of bacterial peptidoglycan","year":2013,"lang":"en","type":"review","venue":"Current Opinion in Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Howard Hughes Medical Institute","keywords":"Peptidoglycan; Bacterial cell structure; Cell biology; Cell wall; Morphogenesis; Degradation (telecommunications); Bacterial growth; Chemistry; Biophysics; Biology; Bacteria; Biochemistry; Computer science; Gene; Genetics","score_opus":0.06114729705919625,"score_gpt":0.3481427025235526,"score_spread":0.28699540546435637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035903935","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.023309143,0.97283006,0.000018584058,0.00004874389,0.0030017274,0.0006821198,0.000095985066,0.0000072313023,0.0000064307387],"genre_scores_gemma":[0.006489636,0.99099755,0.00017780332,0.000002290908,0.000473192,0.00010106713,0.001729212,0.000020598858,0.000008634951],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984124,0.00023445787,0.00062430324,0.00044221448,0.00005217739,0.00023444918],"domain_scores_gemma":[0.999018,0.00005120778,0.00049946294,0.00034672522,0.00005144905,0.000033127446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000146444,0.00030061076,0.0006369527,0.00011519874,0.000055049437,0.000021195578,0.00029548164,0.0006523142,0.000036912606],"category_scores_gemma":[0.00010305812,0.0001883726,0.0001369958,0.00011518286,0.0002722313,0.000003983138,0.00023564191,0.0002065988,0.0000018953199],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014271139,0.000005172573,0.0000821904,0.0013459878,0.000033890665,1.3475423e-8,0.000006208111,1.4265316e-7,0.008591706,0.0005536995,0.000091480644,0.9892752],"study_design_scores_gemma":[0.00016522246,0.00013341331,0.00043983533,0.00095354626,0.00005911514,0.000024768935,0.0000068864238,0.00001255462,0.0011213303,0.00034406234,0.9964626,0.00027670167],"about_ca_topic_score_codex":0.000028409653,"about_ca_topic_score_gemma":0.000012924715,"teacher_disagreement_score":0.9963711,"about_ca_system_score_codex":0.000020354513,"about_ca_system_score_gemma":0.00007945203,"threshold_uncertainty_score":0.7681612},"labels":[],"label_agreement":null},{"id":"W2036307146","doi":"10.1074/jbc.m702952200","title":"Biochemical Characterization of MsbA from Pseudomonas aeruginosa","year":2007,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Pseudomonas aeruginosa; Bacterial outer membrane; Lipid A; ATP-binding cassette transporter; Lipopolysaccharide; Chemistry; Biology; Gene; Biochemistry; Microbiology; Bacteria; Escherichia coli; Genetics; Transporter","score_opus":0.010858077942469927,"score_gpt":0.23063611099748085,"score_spread":0.21977803305501092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036307146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997725,0.000380864,0.001307595,0.00012354123,0.00016678641,0.000042590047,0.000048750077,0.000005585081,0.00019926812],"genre_scores_gemma":[0.99690336,0.00046416614,0.0015189694,0.000082748134,0.00081599527,5.787426e-7,0.00017180946,0.0000090316125,0.000033329372],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988371,0.00002011453,0.0006003137,0.00020569249,0.0001265937,0.0002101617],"domain_scores_gemma":[0.9989652,0.000022631757,0.00050721504,0.00020687158,0.00018916829,0.0001089201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029699062,0.00015249333,0.00028480284,0.000026540965,0.000021168287,0.000008205702,0.00032316725,0.0006659652,0.000085049025],"category_scores_gemma":[0.00017231982,0.00011450051,0.00017443713,0.00009184171,0.00020106383,0.0000026248329,0.0001225923,0.00019936044,0.0000015958468],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035389053,0.00011899865,0.003095985,0.000009429962,0.00005390652,0.000010218471,0.0000051408765,2.5815407e-7,0.9942186,0.000005888956,0.00009143104,0.0020362884],"study_design_scores_gemma":[0.00043750994,0.00029231314,0.01360784,0.000018384475,0.000016652404,0.00007014038,0.000022074955,0.0000010246082,0.97597265,0.000081479186,0.009348315,0.00013163952],"about_ca_topic_score_codex":0.0000021222434,"about_ca_topic_score_gemma":2.7971373e-7,"teacher_disagreement_score":0.018245937,"about_ca_system_score_codex":0.00001308158,"about_ca_system_score_gemma":0.000046468984,"threshold_uncertainty_score":0.51365334},"labels":[],"label_agreement":null},{"id":"W2036810108","doi":"10.1042/bj20041125","title":"Structural characterization of <i>Escherichia coli</i> sensor histidine kinase EnvZ: the periplasmic C-terminal core domain is critical for homodimerization","year":2004,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Periplasmic space; Histidine kinase; Biochemistry; Histidine; Osmotic shock; Biology; Escherichia coli; Biophysics; Transmembrane domain; Chemistry; Membrane; Enzyme; Gene","score_opus":0.01167246538684095,"score_gpt":0.24974412999063889,"score_spread":0.23807166460379794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036810108","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928628,0.00017245168,0.0043848013,0.0018355038,0.00033380257,0.00021476609,0.00017904904,0.00000783774,0.000008950548],"genre_scores_gemma":[0.9938981,0.00013372491,0.004487102,0.00048210868,0.00070034736,0.000012465162,0.00023362253,0.000024085806,0.00002844188],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989239,0.000028234395,0.0003729042,0.00025716537,0.00014089198,0.00027687754],"domain_scores_gemma":[0.99926364,0.000013076614,0.00018785665,0.00021930611,0.00021492822,0.00010119559],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011908486,0.00018624387,0.00020238585,0.000035099576,0.0001720262,0.000041332787,0.00025837586,0.00032703875,0.000024200153],"category_scores_gemma":[0.00012102312,0.00013961144,0.00014502007,0.0000962664,0.00034225793,0.000005690908,0.00007547564,0.00018062716,0.0000013263244],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033030598,0.00004823987,0.00007474251,0.00002698923,0.000030489233,0.000003123719,0.00003767539,0.0000028371069,0.99865144,0.00025901955,0.00016295753,0.00037219602],"study_design_scores_gemma":[0.0009749557,0.00047408353,0.00096000324,0.000026598793,0.000044114255,0.00024764414,0.000042812982,0.00005111644,0.9920651,0.00052338216,0.0044071237,0.00018306896],"about_ca_topic_score_codex":0.000002302495,"about_ca_topic_score_gemma":6.831621e-7,"teacher_disagreement_score":0.0065863277,"about_ca_system_score_codex":0.0000293234,"about_ca_system_score_gemma":0.00013959751,"threshold_uncertainty_score":0.5693189},"labels":[],"label_agreement":null},{"id":"W2037347466","doi":"10.1371/journal.pgen.1004056","title":"A Genome-Wide Screen for Bacterial Envelope Biogenesis Mutants Identifies a Novel Factor Involved in Cell Wall Precursor Metabolism","year":2014,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":140,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Alexander von Humboldt-Stiftung","keywords":"Biogenesis; Cell envelope; Biology; Mutant; Cell biology; Genetic screen; Computational biology; Gene; Genetics; Escherichia coli","score_opus":0.01929397671352112,"score_gpt":0.22017221109264476,"score_spread":0.20087823437912364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037347466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955772,0.0007815946,0.0014417738,0.00017795978,0.00044281,0.00086656306,0.0006160204,0.000032250962,0.00006382491],"genre_scores_gemma":[0.98981184,0.00068235863,0.00760694,0.00024978255,0.0005868609,0.00012979757,0.0006104926,0.00009421457,0.00022769668],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977385,0.00007731352,0.00055882253,0.0007887987,0.00018382017,0.00065273704],"domain_scores_gemma":[0.99873656,0.000040974264,0.00020994619,0.0006795846,0.00018159396,0.00015131602],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019447277,0.00040970632,0.00046045386,0.00017768407,0.00008967529,0.00009018496,0.00063016545,0.00065200496,0.000038933314],"category_scores_gemma":[0.00018367125,0.00040763436,0.00016757859,0.00018329384,0.00013667828,0.000005694934,0.00033425208,0.000118313365,0.000020087566],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021569384,0.0002496859,0.002708798,0.000059168364,0.00008938482,6.1949737e-7,0.000068679925,0.000018074616,0.9958493,0.000009582676,0.00006731438,0.0006637163],"study_design_scores_gemma":[0.0018146778,0.00037531415,0.01823401,0.000013333346,0.0000739468,0.0000015934722,0.000021023929,0.00030078046,0.9159209,0.00008252191,0.06266164,0.00050024607],"about_ca_topic_score_codex":0.000018563218,"about_ca_topic_score_gemma":0.0005683934,"teacher_disagreement_score":0.07992837,"about_ca_system_score_codex":0.000023196355,"about_ca_system_score_gemma":0.00011953199,"threshold_uncertainty_score":0.9998376},"labels":[],"label_agreement":null},{"id":"W2037560548","doi":"10.1371/journal.pgen.1001119","title":"The Metabolic Enzyme ManA Reveals a Link between Cell Wall Integrity and Chromosome Morphology","year":2010,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"McMaster University","keywords":"Biology; Cell wall; Cell division; Cell biology; Teichoic acid; Chromosome segregation; Bacillus subtilis; Nucleoid; Cell; DNA; PEP group translocation; Chromosome; Bacteria; Biochemistry; Genetics; Enzyme; Peptidoglycan","score_opus":0.013286104330522481,"score_gpt":0.2307939110690263,"score_spread":0.2175078067385038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037560548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99170774,0.0048605152,0.00003269011,0.0024670223,0.00032802334,0.00028468794,0.000054876535,0.00002539167,0.00023902144],"genre_scores_gemma":[0.9910008,0.0050772727,0.0018570939,0.00030232387,0.0012401142,0.000027836222,0.0000685296,0.000042290154,0.00038375132],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984684,0.00008842793,0.0003369217,0.00050567364,0.00012628632,0.0004743015],"domain_scores_gemma":[0.99874234,0.000040783092,0.00013669232,0.0008146499,0.000114637376,0.00015091551],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026384278,0.0002632382,0.00027929276,0.000046085224,0.00020293679,0.00006711647,0.0005522132,0.00077120715,0.000020065609],"category_scores_gemma":[0.000089488254,0.00019956355,0.00008012145,0.00009933262,0.00043365953,0.0000019058012,0.00045921904,0.0006586552,0.000023530942],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016120075,0.00002838289,0.0037208542,0.000011095117,0.00006701617,0.0000024779642,0.000017395365,3.9763074e-7,0.9883331,0.00018938714,0.00032120408,0.0072925505],"study_design_scores_gemma":[0.0003063719,0.0002617888,0.0052643027,0.0000027879667,0.00007514934,0.000021326807,0.000009782909,0.000039921364,0.8166015,0.00075268745,0.17643626,0.00022809507],"about_ca_topic_score_codex":0.000009757903,"about_ca_topic_score_gemma":0.000094908406,"teacher_disagreement_score":0.17611507,"about_ca_system_score_codex":0.0000041580984,"about_ca_system_score_gemma":0.000065992754,"threshold_uncertainty_score":0.8137965},"labels":[],"label_agreement":null},{"id":"W2037846585","doi":"10.1074/jbc.m114.565879","title":"Structural Insights into the Lipoprotein Outer Membrane Regulator of Penicillin-binding Protein 1B","year":2014,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; British Columbia Knowledge Development Fund; Canadian Light Source; Howard Hughes Medical Institute","keywords":"Peptidoglycan; Lipid II; Escherichia coli; Bacterial outer membrane; Penicillin binding proteins; Biology; Bacterial cell structure; Cell biology; Biochemistry; Cell wall; Biophysics; Bacteria; Gene; Genetics","score_opus":0.010671688890690142,"score_gpt":0.22037287880128512,"score_spread":0.20970118991059497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037846585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985745,0.0005013384,0.000059121405,0.00045851438,0.00012127373,0.00011688408,0.000004088752,0.0000051673924,0.00015912583],"genre_scores_gemma":[0.99788946,0.000116056806,0.001049726,0.000056122553,0.00068570615,0.0000041526923,0.000017054164,0.000011040551,0.00017067166],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987738,0.000081109436,0.00055175513,0.00022757467,0.00016030575,0.0002054226],"domain_scores_gemma":[0.99883443,0.000020451955,0.00054230343,0.00033883107,0.00018093998,0.00008306036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003396644,0.00018908556,0.0003251882,0.000022772105,0.00007359085,0.000019284755,0.0005664229,0.0005370786,0.00004658529],"category_scores_gemma":[0.00030418226,0.00010203736,0.00020817887,0.000085694744,0.00032542655,0.0000035373212,0.00020182056,0.00029800629,0.0000015225811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017700881,0.000031404,0.00010812405,0.000029523437,0.000053527845,0.000003817793,0.00002362574,0.000005352992,0.9965316,0.00003528152,0.000036366993,0.00296438],"study_design_scores_gemma":[0.00051641866,0.0005605921,0.00027776705,0.00003299412,0.000015653008,0.00009094556,0.000043813172,0.000020412073,0.98625004,0.00043447604,0.011612362,0.00014451529],"about_ca_topic_score_codex":0.000005060068,"about_ca_topic_score_gemma":0.0000023130617,"teacher_disagreement_score":0.011575996,"about_ca_system_score_codex":0.000014329102,"about_ca_system_score_gemma":0.000049345806,"threshold_uncertainty_score":0.4160963},"labels":[],"label_agreement":null},{"id":"W2038109524","doi":"10.1159/000077868","title":"Recent Advances in the Structure and Assembly of the Archaeal Flagellum","year":2004,"lang":"en","type":"review","venue":"Microbial Physiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Flagellum; Flagellin; Pilus; Protein filament; Biology; Signal peptidase; Signal peptide; Cell biology; Bacteria; Peptide sequence; Microbiology; Biochemistry; Genetics; Gene; Escherichia coli","score_opus":0.00871056771439226,"score_gpt":0.2569029831574014,"score_spread":0.24819241544300913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038109524","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.040781233,0.95809937,0.0000012440067,0.00010632837,0.00039070033,0.0004585236,0.00014106285,0.0000025381862,0.000018993025],"genre_scores_gemma":[0.010573977,0.9888028,0.000048230275,0.000114082926,0.00024399794,0.000008776745,0.00017388088,0.000019709716,0.000014578939],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986844,0.00026615633,0.00034348285,0.00040649224,0.00004720825,0.0002522378],"domain_scores_gemma":[0.9991799,0.000017400069,0.000257559,0.0004998392,0.00002890272,0.000016389256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000095088195,0.00027296637,0.00061878527,0.000042231306,0.0000492766,0.0000075699113,0.0006456648,0.0006950668,0.0000068808354],"category_scores_gemma":[0.000030930125,0.0001445535,0.00016509662,0.00015811082,0.00043846676,0.0000013433082,0.0003941036,0.0003523604,0.0000010298891],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016658169,0.0000298541,6.0262323e-7,0.0011851444,0.000031544885,7.445751e-7,0.000024880808,0.0000028664963,0.6370014,0.00007024695,0.00007884183,0.36155722],"study_design_scores_gemma":[0.00018374168,0.00015591837,0.000048583563,0.00044244187,0.000060119077,0.000056957713,0.000009311498,5.823286e-8,0.02113577,0.0002606039,0.9774845,0.0001619519],"about_ca_topic_score_codex":0.000009640991,"about_ca_topic_score_gemma":0.00015975142,"teacher_disagreement_score":0.9774057,"about_ca_system_score_codex":0.000014011877,"about_ca_system_score_gemma":0.00017048352,"threshold_uncertainty_score":0.58947206},"labels":[],"label_agreement":null},{"id":"W2038505618","doi":"10.1128/jb.01622-14","title":"Leucine-Responsive Regulatory Protein Lrp and PapI Homologues Influence Phase Variation of CS31A Fimbriae","year":2014,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Phase variation; Operon; Biology; Gene; Methylation; Leucine; lac operon; Escherichia coli; Cell biology; Genetics; Amino acid; Phenotype","score_opus":0.0054650683615177055,"score_gpt":0.23151819650332675,"score_spread":0.22605312814180906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038505618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844056,0.00034363088,0.00048367708,0.00037083073,0.00020282986,0.00012104367,0.0000134967295,0.0000038229755,0.000020131121],"genre_scores_gemma":[0.9975133,0.00018815145,0.0018316532,0.00013163041,0.00026175578,0.0000036493582,0.000013621361,0.000012319316,0.000043941796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99878526,0.00023264809,0.00053572655,0.00019945607,0.00007169774,0.00017518747],"domain_scores_gemma":[0.99868435,0.000030810286,0.0006703175,0.0002525753,0.00029258724,0.000069358626],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051318674,0.00014424634,0.00035800206,0.00011985132,0.00003988038,0.000010410084,0.00019819848,0.00039590575,0.000010787931],"category_scores_gemma":[0.00044239723,0.00012070743,0.00007746568,0.00005959797,0.0002895712,0.000008240482,0.00011367776,0.00015328277,0.0000011618259],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00072298443,0.00006759389,0.00042920752,0.000020711386,0.00006697774,0.0000038900275,0.00004090669,0.000011022755,0.9943944,0.00023865738,0.000044958244,0.0039586653],"study_design_scores_gemma":[0.0023860189,0.0069389013,0.12829605,0.00005195192,0.000051588795,0.0004008552,0.000025764615,0.000022955928,0.8454389,0.000954575,0.015227386,0.00020507284],"about_ca_topic_score_codex":0.0000108560835,"about_ca_topic_score_gemma":0.0000050163444,"teacher_disagreement_score":0.14895554,"about_ca_system_score_codex":0.000009432767,"about_ca_system_score_gemma":0.00008958695,"threshold_uncertainty_score":0.49223062},"labels":[],"label_agreement":null},{"id":"W2038528328","doi":"10.1128/jb.01238-10","title":"Role of Maltose Enzymes in Glycogen Synthesis by Escherichia coli","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Agriculture and Agri-Food Canada","funders":"Common Fund; Hallym University; National Research Foundation","keywords":"Maltose; Glycogen; Maltodextrin; Glycogen branching enzyme; Glycogen phosphorylase; Biochemistry; Biology; Glycogen debranching enzyme; Glycogen synthase; Escherichia coli; Enzyme; Chemistry; Gene; Chromatography","score_opus":0.007967524431123378,"score_gpt":0.20519529852662047,"score_spread":0.19722777409549708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038528328","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99722314,0.0020169388,0.000027012002,0.0000767313,0.00018807188,0.00006378992,0.000023292265,0.0000022770748,0.00037872145],"genre_scores_gemma":[0.99711037,0.0008951464,0.0017528936,0.0000744072,0.000107572916,0.000004158324,0.0000064059864,0.00001553667,0.000033520664],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988892,0.00011869651,0.00055262074,0.00016409457,0.000055838278,0.00021955304],"domain_scores_gemma":[0.99916303,0.000017151617,0.00045061848,0.00020670037,0.0000997104,0.00006279736],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025566173,0.00013791284,0.00037567175,0.00010883869,0.000014261188,0.000004049776,0.00033499778,0.0004128031,0.00011974757],"category_scores_gemma":[0.00012020571,0.00011798062,0.00011258099,0.00008427511,0.0001593594,0.0000042454817,0.00010870206,0.0001507639,0.000002879608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051816675,0.00014114965,0.0061563286,0.000007974188,0.00007426029,0.000006423527,0.00004885717,5.524987e-7,0.9890834,0.000086246946,0.00023093747,0.003645704],"study_design_scores_gemma":[0.0003737976,0.0010939793,0.029250706,0.000014651093,0.000023168393,0.00007495479,0.00008616886,0.000002015347,0.9511386,0.00016864396,0.017656526,0.00011677999],"about_ca_topic_score_codex":0.000041650914,"about_ca_topic_score_gemma":0.000027465816,"teacher_disagreement_score":0.03794479,"about_ca_system_score_codex":0.000010674101,"about_ca_system_score_gemma":0.00008540318,"threshold_uncertainty_score":0.48111102},"labels":[],"label_agreement":null},{"id":"W2038540528","doi":"10.1126/science.1058758","title":"Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria","year":2001,"lang":"en","type":"article","venue":"Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":379,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Flagellum; Plasmid; Mutant; Gene; Transcription (linguistics); Biology; Reporter gene; Escherichia coli; Gene expression; Computational biology; Genetics; Phenotype; Cell biology","score_opus":0.007010203622438409,"score_gpt":0.2272658447672024,"score_spread":0.220255641144764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038540528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99853563,0.00050978665,0.00062929105,0.000026604352,0.00010995682,0.000047246875,0.000025462807,0.000005518853,0.0001104911],"genre_scores_gemma":[0.9973817,0.00063153356,0.0018464003,0.000025564676,0.000032820437,0.0000029188627,0.000026884547,0.00000566295,0.000046523503],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990832,0.000022959326,0.00019332327,0.00036443482,0.00011762059,0.0002184402],"domain_scores_gemma":[0.999482,0.000009758322,0.00008109269,0.0003324419,0.00004956583,0.00004515888],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017491104,0.00009165477,0.00014957882,0.00016119645,0.000036939575,0.0000240914,0.00035953644,0.00012436428,0.00003988341],"category_scores_gemma":[0.00007442649,0.00008341993,0.000041804105,0.0008364209,0.00021353968,0.0000039814363,0.00027018058,0.000041364925,0.0000010726804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011866575,0.00003880901,0.009305683,0.0000014049596,0.000011575909,9.057186e-7,0.000031931842,0.00007127233,0.9854901,0.0000013118604,0.000007160997,0.0050279913],"study_design_scores_gemma":[0.00007247029,0.00009715786,0.033226524,0.000013764661,0.0000145069125,7.155961e-7,0.000035606852,0.00029891072,0.9607147,0.000009057961,0.0054146843,0.00010188475],"about_ca_topic_score_codex":0.00006160599,"about_ca_topic_score_gemma":0.00020856997,"teacher_disagreement_score":0.024775371,"about_ca_system_score_codex":0.000009420556,"about_ca_system_score_gemma":0.00003809135,"threshold_uncertainty_score":0.3401766},"labels":[],"label_agreement":null},{"id":"W2038825520","doi":"10.1006/plas.2001.1530","title":"Development of Small High-Copy-Number Plasmid Vectors for Gene Expression in Caulobacter crescentus","year":2001,"lang":"en","type":"article","venue":"Plasmid","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Caulobacter crescentus; Plasmid; Biology; Replicon; T-DNA Binary system; S-layer; Origin of replication; Escherichia coli; Gene; Expression vector; Shuttle vector; ColE1; Recombinant DNA; Plasmid preparation; Molecular biology; Genetics; PBR322; Vector (molecular biology); Cell cycle","score_opus":0.012473278941658726,"score_gpt":0.22999397635953459,"score_spread":0.21752069741787586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038825520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980834,0.00007503469,0.0009595185,0.00008041672,0.00035774845,0.0002617444,0.00004104593,0.0000124625385,0.00012861837],"genre_scores_gemma":[0.95711666,0.0001820148,0.041992784,0.00006807096,0.000120077944,0.000056400444,0.0002523525,0.000026470041,0.00018516545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99882394,0.000020970838,0.0003601403,0.00037200717,0.00008408525,0.00033886547],"domain_scores_gemma":[0.9994916,0.000012442896,0.00011428471,0.00025865115,0.000060935003,0.000062124476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011537029,0.0001847159,0.00021246166,0.00006152457,0.000045544748,0.00001073429,0.00021339687,0.00036662715,0.00005023],"category_scores_gemma":[0.000038395137,0.00017135145,0.000057276917,0.000090385314,0.000054930122,0.0000023041766,0.00015144583,0.00007937714,0.000010810344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003635503,0.00012861245,0.009296001,0.000024841851,0.000025023406,0.0000026884557,0.000043691773,0.000024611207,0.98747116,0.000013597979,0.0003179258,0.0022882884],"study_design_scores_gemma":[0.0009214783,0.00010621684,0.0067993514,0.00002551683,0.000006901596,0.00000887898,0.000016721066,0.000017556278,0.8996611,0.000027172073,0.09221567,0.00019339343],"about_ca_topic_score_codex":0.000015556785,"about_ca_topic_score_gemma":0.00021871038,"teacher_disagreement_score":0.09189775,"about_ca_system_score_codex":0.00002465019,"about_ca_system_score_gemma":0.000090619025,"threshold_uncertainty_score":0.698751},"labels":[],"label_agreement":null},{"id":"W2038938047","doi":"10.1016/j.ymeth.2006.10.002","title":"Scanning N-glycosylation mutagenesis of membrane proteins","year":2007,"lang":"en","type":"article","venue":"Methods","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Glycosylation; Mutagenesis; Membrane protein; Chemistry; N-linked glycosylation; Biochemistry; Cell biology; Membrane; Biology; Mutation; Glycoprotein; Gene; Glycan","score_opus":0.018354148797285228,"score_gpt":0.33612524889505463,"score_spread":0.3177711000977694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038938047","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7690677,0.00028178535,0.22943906,0.00004896913,0.0001603991,0.0001291677,0.0000034609382,0.000011518864,0.0008579005],"genre_scores_gemma":[0.7124039,0.000042382857,0.28717503,0.000034534623,0.00013223845,0.000004478056,0.000013281559,0.000012798319,0.00018136711],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992375,0.00008200141,0.00022631514,0.00020681864,0.00006445696,0.00018295975],"domain_scores_gemma":[0.99950755,0.000015169749,0.00010402639,0.00026634504,0.00006818952,0.00003870397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010510355,0.0000941381,0.00013284262,0.000066760666,0.000034517638,0.000005380241,0.0001334917,0.00024655336,0.000024203202],"category_scores_gemma":[0.00013336791,0.00008795647,0.00006188032,0.00013795117,0.00006932288,0.0000011717678,0.000083252926,0.000052932333,0.0000016151502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056231813,0.000020054003,0.00035244803,0.00001337033,0.000018869923,7.394095e-7,0.000013604614,0.000009274945,0.8860603,0.000092127986,0.000010430343,0.11335255],"study_design_scores_gemma":[0.00018174629,0.00019387098,0.004039979,0.0000054921475,0.000011962952,0.000006949309,0.000016522981,0.000025701785,0.96624494,0.00007858403,0.029095413,0.000098827164],"about_ca_topic_score_codex":0.000025364434,"about_ca_topic_score_gemma":0.000015795722,"teacher_disagreement_score":0.11325373,"about_ca_system_score_codex":0.000005872878,"about_ca_system_score_gemma":0.00002585189,"threshold_uncertainty_score":0.35867608},"labels":[],"label_agreement":null},{"id":"W2039287501","doi":"10.1006/jmbi.2001.5331","title":"Dimer formation and transcription activation in the sporulation response regulator Spo0A","year":2002,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phosphorylation; Effector; Transcription (linguistics); Transcription factor; Biology; Response regulator; Cell biology; Mutant; Biochemistry; General transcription factor; Chemistry; Gene; Promoter; Gene expression","score_opus":0.010552315407676104,"score_gpt":0.23448783361170494,"score_spread":0.22393551820402885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039287501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9915521,0.0006301764,0.0049447617,0.0026404173,0.00009343764,0.00010674991,0.0000016512439,0.0000019392899,0.000028729686],"genre_scores_gemma":[0.9986551,0.0002757689,0.00058993377,0.00035834825,0.00008528793,0.0000025286029,0.000013803712,0.000006646427,0.000012608738],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991531,0.00025917252,0.00029126403,0.000110321824,0.00006840838,0.000117739815],"domain_scores_gemma":[0.99956685,0.000013970755,0.00019536536,0.00013620974,0.00006532117,0.0000222655],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005530664,0.0000869652,0.00011201233,0.00011860968,0.00003148484,0.00001367346,0.00011899151,0.00024775046,0.0000080277905],"category_scores_gemma":[0.00009671061,0.00006224706,0.00005404878,0.0000976649,0.00006661902,0.000008661615,0.000017403165,0.00012146286,9.0169823e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035644768,0.00003278764,0.00024331143,0.0000032671112,0.000012468708,0.0000026405112,0.00009354857,0.000013901298,0.9927865,0.00020765599,0.00009091916,0.0061565265],"study_design_scores_gemma":[0.0010918935,0.0012799102,0.019398069,0.000016674698,0.00002226285,0.00026979725,0.000110469104,0.0001406105,0.95546144,0.0008837594,0.021192882,0.00013220035],"about_ca_topic_score_codex":0.0000022502572,"about_ca_topic_score_gemma":0.0000034890384,"teacher_disagreement_score":0.037325054,"about_ca_system_score_codex":0.000011749362,"about_ca_system_score_gemma":0.000010585155,"threshold_uncertainty_score":0.25383613},"labels":[],"label_agreement":null},{"id":"W2039531123","doi":"10.1021/bp0702121","title":"Physiological Improvement to Enhance <i>Escherichia coli</i> Cell‐Surface Display via Reducing Extracytoplasmic Stress","year":2008,"lang":"en","type":"article","venue":"Biotechnology Progress","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Periplasmic space; Escherichia coli; Bacterial outer membrane; Biology; Cell; Cell biology; Cell membrane; Cell physiology; Chaperone (clinical); Biochemistry; Gene","score_opus":0.007532924033209589,"score_gpt":0.24057298556732626,"score_spread":0.23304006153411666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039531123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99344456,0.001017423,0.0020366057,0.0020117753,0.00045865698,0.00072174694,0.0000580159,0.00019976484,0.000051425708],"genre_scores_gemma":[0.98496777,0.0008149252,0.012994612,0.00040663691,0.0002102901,0.000114687144,0.00007341532,0.00005138876,0.00036630227],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973744,0.00005585691,0.00043206738,0.0011507317,0.00017116213,0.0008157839],"domain_scores_gemma":[0.9985554,0.000007771918,0.00019786107,0.0009799956,0.00009463437,0.00016434293],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001278137,0.00043754294,0.00039558558,0.00008521316,0.000277261,0.000023177661,0.0008359372,0.001385037,0.000016120255],"category_scores_gemma":[0.000034501958,0.0003963349,0.00012479146,0.0003510798,0.00071344315,0.0000057040443,0.00075771706,0.00040411885,0.00006320241],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014093911,0.0002899656,0.00044668745,0.00002569657,0.000043951397,0.000033109,0.000021388458,0.000052751366,0.9912286,0.00003262695,0.00093218475,0.0067521385],"study_design_scores_gemma":[0.0003459024,0.0019111065,0.0014743692,0.000018996647,0.000016840091,0.000050371214,0.000027938066,0.00006458459,0.9753952,0.00002041471,0.020174623,0.0004996643],"about_ca_topic_score_codex":0.00001861817,"about_ca_topic_score_gemma":0.000010562397,"teacher_disagreement_score":0.019242438,"about_ca_system_score_codex":0.000036630423,"about_ca_system_score_gemma":0.00008423957,"threshold_uncertainty_score":0.99991137},"labels":[],"label_agreement":null},{"id":"W2040036884","doi":"10.1016/j.jmb.2004.04.076","title":"The Bacterial Protein–Translocation Complex: SecYEG Dimers Associate with One or Two SecA Molecules","year":2004,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Periplasmic space; Translocase; Chemiosmosis; Biology; Population; Biophysics; ATPase; Membrane; Membrane transport protein; Translocon; Membrane protein; Biochemistry; Transport protein; Escherichia coli; Chromosomal translocation; Chemistry; ATP synthase; Enzyme","score_opus":0.010580260193922296,"score_gpt":0.25271136475299233,"score_spread":0.24213110455907003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040036884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97929513,0.00064771395,0.016470242,0.0029088128,0.00026917734,0.0002969712,0.000020919413,0.000009551237,0.000081451064],"genre_scores_gemma":[0.99165916,0.00038263085,0.0071613095,0.00029869066,0.00035313994,0.000012719457,0.00006179529,0.000034038316,0.000036535665],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984999,0.00016891077,0.00050360936,0.0002729421,0.00016229766,0.00039235727],"domain_scores_gemma":[0.99871826,0.000014009182,0.00052369345,0.0003295706,0.00031381674,0.0001006634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040598286,0.00023585628,0.0003190159,0.000070805196,0.00015771954,0.000050778028,0.00047560295,0.00034044895,0.000014706618],"category_scores_gemma":[0.00010802126,0.00014328754,0.00014627264,0.00015006645,0.000351397,0.000004915842,0.00009300107,0.00026139527,0.000003529339],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012654539,0.0000997076,0.00003201882,0.000006064918,0.0003407307,0.000026300988,0.000017849643,0.00010304371,0.99216926,0.0008496704,0.00003060641,0.0050593163],"study_design_scores_gemma":[0.0030590578,0.0036195337,0.00033545395,0.00003766453,0.00006477207,0.00025711305,0.00003906208,0.00000273909,0.9752312,0.0013697204,0.015745694,0.0002380105],"about_ca_topic_score_codex":0.000025068273,"about_ca_topic_score_gemma":0.00019584152,"teacher_disagreement_score":0.016938057,"about_ca_system_score_codex":0.00004085262,"about_ca_system_score_gemma":0.00036128354,"threshold_uncertainty_score":0.58430964},"labels":[],"label_agreement":null},{"id":"W2040434273","doi":"10.1111/j.1574-6968.2010.01921.x","title":"<i>Escherichia coli</i>ArgR mutants defective in<i>cer</i>/Xer recombination, but not in DNA binding","year":2010,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Repressor; Mutant; Repressor lexA; Escherichia coli; Lac repressor; DNA; Molecular biology; Biology; SOS response; Mutagenesis; Chemistry; lac operon; Gene; Biochemistry; Gene expression","score_opus":0.0050988638993975976,"score_gpt":0.2048619328460262,"score_spread":0.1997630689466286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040434273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996258,0.000042397107,0.000023707587,0.0017957602,0.0013227923,0.00032978057,0.00007471613,0.00002296696,0.00012984317],"genre_scores_gemma":[0.99576044,0.000071476636,0.0006145909,0.0029679812,0.000150062,0.000041548345,0.0002599805,0.000034887275,0.00009901142],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982481,0.000120814664,0.0003753847,0.00066125015,0.000035323836,0.00055912515],"domain_scores_gemma":[0.9993632,0.000024160929,0.00013937638,0.00037406676,0.000045339628,0.000053861775],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00030799845,0.00027237122,0.0002954728,0.00021558984,0.00006360728,0.000022224553,0.0003707587,0.0008058217,0.000035810208],"category_scores_gemma":[0.00009012034,0.0002785562,0.00008322378,0.0002561206,0.00028918037,0.000005893784,0.00019361706,0.0005542073,0.00005777376],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010310265,0.00008741008,0.009241612,0.0000056154254,0.00002880371,0.000015337013,0.000049430648,0.0000037425707,0.9892418,0.000025864516,0.00054412876,0.00065319444],"study_design_scores_gemma":[0.0012339177,0.00014804349,0.017605085,0.0000118013595,0.000007831381,0.000049016868,0.0000304935,0.0000037297646,0.9624948,0.00002770356,0.0180445,0.00034310154],"about_ca_topic_score_codex":0.0000789355,"about_ca_topic_score_gemma":0.0011714261,"teacher_disagreement_score":0.026746983,"about_ca_system_score_codex":0.000039572216,"about_ca_system_score_gemma":0.000061706276,"threshold_uncertainty_score":0.9999667},"labels":[],"label_agreement":null},{"id":"W2040749742","doi":"10.1016/j.mimet.2005.06.003","title":"A simple, rapid, sensitive method detecting homoserine lactone (HSL)-related compounds in microbial extracts","year":2005,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"","keywords":"Homoserine; Biology; Reporter gene; Bioreporter; Strain (injury); Biochemistry; Gene; Molecular biology; Microbiology; Gene expression; Quorum sensing; Virulence","score_opus":0.01819355864792275,"score_gpt":0.3293419626112803,"score_spread":0.3111484039633575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040749742","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9795203,0.0010999908,0.018189386,0.0004889758,0.00034154853,0.00016452478,0.000017036306,0.000013142089,0.00016507576],"genre_scores_gemma":[0.6499499,0.00044858543,0.34886116,0.00031876494,0.00034033865,0.000001436813,0.000017145432,0.000018335506,0.000044291824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99686414,0.0012088749,0.0009993338,0.00039193235,0.00006591233,0.00046981924],"domain_scores_gemma":[0.9986238,0.00019274524,0.00061248406,0.00024350744,0.00020882169,0.00011863175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027734025,0.00029842948,0.00064931303,0.00018591191,0.00006784174,0.000031824864,0.00035956432,0.00084240205,0.00005575151],"category_scores_gemma":[0.00062154804,0.00022984976,0.00028462795,0.00027514095,0.00017199521,0.000008725134,0.00025419606,0.0007313173,0.000005083202],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038736057,0.00016969837,0.00013041132,0.0000055771416,0.00009505973,0.000029139816,0.000031114214,0.00008389583,0.8953428,0.000014439009,0.00015954918,0.10355095],"study_design_scores_gemma":[0.001464966,0.0010519307,0.00376376,0.000024724044,0.000035998815,0.0016596226,0.00006411262,0.000059680686,0.9277948,0.00012807621,0.06367333,0.00027900387],"about_ca_topic_score_codex":0.000008807056,"about_ca_topic_score_gemma":0.000025754898,"teacher_disagreement_score":0.3306718,"about_ca_system_score_codex":0.00005875407,"about_ca_system_score_gemma":0.00007662472,"threshold_uncertainty_score":0.9373001},"labels":[],"label_agreement":null},{"id":"W2041033050","doi":"10.1016/j.carres.2003.08.011","title":"The structure of the polysaccharide part of the LPS from Serratia marcescens serotype O19, including linkage region to the core and the residue at the non-reducing end","year":2003,"lang":"en","type":"article","venue":"Carbohydrate Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Chemistry; Disaccharide; Serratia marcescens; Polysaccharide; Residue (chemistry); Carbohydrate conformation; Oligosaccharide; Nuclear magnetic resonance spectroscopy; Stereochemistry; Biochemistry; Escherichia coli","score_opus":0.03437104471335283,"score_gpt":0.2917650854082971,"score_spread":0.25739404069494426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041033050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98410594,0.0020001235,0.0000043394657,0.012380149,0.00039916806,0.000873146,0.00008305952,0.000003160884,0.00015089194],"genre_scores_gemma":[0.99770087,0.0011052619,0.000013025807,0.00022818612,0.00025201996,0.000028123026,0.00000839486,0.000024065812,0.0006400782],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975876,0.0009086429,0.00031538596,0.0003748293,0.00037998334,0.00043353383],"domain_scores_gemma":[0.997635,0.00027289812,0.00018155157,0.0016288734,0.00023050662,0.00005113507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013119119,0.00018330559,0.00019231567,0.00002827203,0.0011928265,0.00007777881,0.0013004204,0.0002879203,0.000013245055],"category_scores_gemma":[0.0006272268,0.000063759595,0.00011433518,0.00048215306,0.0015045721,0.0000031176044,0.0014989277,0.00061471335,0.0000011869197],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001697407,0.0000069317,0.000970279,0.000010311417,0.00007396431,6.3023305e-7,0.0005121268,0.00004358017,0.99525577,0.0004920918,0.0018843756,0.0005802004],"study_design_scores_gemma":[0.0003287223,0.000089524685,0.0035728216,0.000051481085,0.000032540025,0.000009584444,0.00058725366,0.00008677612,0.98108137,0.00092960265,0.013138755,0.00009157064],"about_ca_topic_score_codex":0.00074647705,"about_ca_topic_score_gemma":0.0031321787,"teacher_disagreement_score":0.014174401,"about_ca_system_score_codex":0.000028365392,"about_ca_system_score_gemma":0.00020298334,"threshold_uncertainty_score":0.91743773},"labels":[],"label_agreement":null},{"id":"W2041371717","doi":"10.1107/s174430910901642x","title":"Crystallographic characterization of the passenger domain of the<i>Bordetella</i>autotransporter BrkA","year":2009,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology and Crystallization Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Domain (mathematical analysis); Microbiology; Characterization (materials science); Chemistry; Materials science; Biology; Nanotechnology; Mathematics","score_opus":0.006238754388780742,"score_gpt":0.22527840690237855,"score_spread":0.2190396525135978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041371717","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99519557,0.00024068597,0.0008568891,0.0028159777,0.00024413929,0.00040663042,0.00010274149,0.0000205905,0.00011675919],"genre_scores_gemma":[0.9973934,0.0015148503,0.00038875247,0.0002639575,0.00005557956,0.000012368251,0.00033246612,0.000012460661,0.00002613024],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986217,0.00028348417,0.0005070681,0.00029500507,0.00010228266,0.00019045878],"domain_scores_gemma":[0.99805295,0.000019757004,0.00048711422,0.0011766565,0.00022424372,0.00003926911],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015454393,0.0002025998,0.00021945554,0.000119309094,0.0003877007,0.000016040827,0.00075774966,0.00046470732,0.000014330714],"category_scores_gemma":[0.000034256107,0.00013699119,0.00018898984,0.00068140234,0.0010498319,0.0000144397145,0.00023406053,0.00022259078,1.593787e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003948035,0.00003796517,0.018838027,0.000012091311,0.000058356338,2.2105613e-8,0.00007083445,0.0000051421566,0.97800684,0.0023831145,0.000011686089,0.00053642987],"study_design_scores_gemma":[0.0006890921,0.00044908578,0.8727137,0.000043637683,0.00010024681,0.00003690343,0.000100003665,0.0000581057,0.0600543,0.007057558,0.058362946,0.0003344356],"about_ca_topic_score_codex":0.000015208201,"about_ca_topic_score_gemma":0.00014472094,"teacher_disagreement_score":0.91795254,"about_ca_system_score_codex":0.0000062081035,"about_ca_system_score_gemma":0.000047405047,"threshold_uncertainty_score":0.55863386},"labels":[],"label_agreement":null},{"id":"W2041787141","doi":"10.2174/1568026013395623","title":"Structural Biology of Bacterial Iron Uptake Systems","year":2001,"lang":"en","type":"review","venue":"Current Topics in Medicinal Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":169,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Siderophore; Biochemistry; Biology; Escherichia coli; Bacteria; Serratia marcescens; Membrane protein; Iron-binding proteins; Membrane transport protein; Transport protein; Heme; Inner membrane; Microbiology; Chemistry; Transferrin; Membrane; Gene","score_opus":0.03907339219779003,"score_gpt":0.3328457818495502,"score_spread":0.29377238965176017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041787141","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.021832716,0.9745423,0.0000099582385,0.000010306216,0.0028183688,0.00031350352,0.00013893335,0.000010234486,0.00032364335],"genre_scores_gemma":[0.0014936816,0.9927831,0.00003816116,0.00000273336,0.0033683095,0.000040014558,0.0020563158,0.000034422133,0.00018320447],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99781454,0.000078768666,0.00095746946,0.00061735,0.00013492725,0.00039696618],"domain_scores_gemma":[0.9987188,0.000013988467,0.00048727353,0.00062079675,0.00006631303,0.00009284331],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00018918405,0.0004582729,0.0012569829,0.00007497698,0.000026257725,0.000013003612,0.0006353419,0.0013313725,0.000088793626],"category_scores_gemma":[0.000113991395,0.00038086984,0.00024698424,0.00018140062,0.00027648022,0.0000014426095,0.00027356477,0.00057543133,0.000002449973],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026327063,0.000050075778,0.00005032854,0.013162144,0.000063076215,0.000007682339,0.0000072840844,7.8494486e-7,0.013480303,0.00006319586,0.0003066461,0.97278214],"study_design_scores_gemma":[0.00036302986,0.00011499184,0.000006125122,0.0023766162,0.00013844587,0.000096582684,0.000011723623,0.0000030312071,0.001507025,0.000021855034,0.9950278,0.00033277622],"about_ca_topic_score_codex":0.000010471518,"about_ca_topic_score_gemma":0.0000038426033,"teacher_disagreement_score":0.9947212,"about_ca_system_score_codex":0.000055322904,"about_ca_system_score_gemma":0.00027620106,"threshold_uncertainty_score":0.99996513},"labels":[],"label_agreement":null},{"id":"W2042159401","doi":"10.4137/grsb.s4525","title":"Transcriptional Response of <i>E. coli</i> Upon FimH-mediated Fimbrial Adhesion","year":2010,"lang":"en","type":"article","venue":"Gene Regulation and Systems Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"Genome Alberta; Genome Canada","keywords":"Biofilm; Adhesion; Escherichia coli; Gene; Cell biology; Cell adhesion; Biology; Bacteria; Microbiology; Chemistry; Genetics","score_opus":0.009676734189361753,"score_gpt":0.2278152033053702,"score_spread":0.21813846911600845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042159401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99746794,0.00037453027,0.00045930885,0.00023374666,0.00105271,0.00022663691,0.00011954629,0.000014970957,0.000050624407],"genre_scores_gemma":[0.9983361,0.00015339357,0.00039733117,0.000049591974,0.000375752,0.000015340309,0.0004674674,0.000011704,0.00019333638],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895215,0.0001870775,0.00033476346,0.00029529934,0.00006378893,0.0001669016],"domain_scores_gemma":[0.9994182,0.000029368308,0.00013967814,0.00023685375,0.00011325693,0.00006266521],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044524868,0.00012838877,0.00019998116,0.00008007957,0.00006282587,0.000011014362,0.00009971907,0.0006444728,0.00003183711],"category_scores_gemma":[0.000083950676,0.000113303366,0.000055489654,0.00007184736,0.00016104737,0.000002350162,0.00004238991,0.00008921899,0.000005275851],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00086443644,0.000024845696,0.0006999692,0.000012383728,0.000021715021,2.948733e-7,0.000012981124,0.0000064473256,0.9964729,0.0011362605,0.0001649484,0.00058280065],"study_design_scores_gemma":[0.0010200053,0.00067181507,0.031813662,0.0000071652557,0.000013275292,0.000052050527,0.000016778738,0.00033592473,0.82424694,0.000071707145,0.14157932,0.00017138793],"about_ca_topic_score_codex":0.000024122446,"about_ca_topic_score_gemma":0.000034020115,"teacher_disagreement_score":0.172226,"about_ca_system_score_codex":0.000004134099,"about_ca_system_score_gemma":0.00006654852,"threshold_uncertainty_score":0.49707642},"labels":[],"label_agreement":null},{"id":"W2042303206","doi":"10.1016/j.jmb.2004.11.026","title":"The Solution Structure of the C-terminal Domain of TonB and Interaction Studies with TonB Box Peptides","year":2004,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Calgary","funders":"","keywords":"CTD; Bacterial outer membrane; Periplasmic space; Isothermal titration calorimetry; Antiparallel (mathematics); Biophysics; C-terminus; Biology; Escherichia coli; Biochemistry; Protein structure; Cytoplasm; Crystallography; Chemistry; Amino acid; Physics; Gene","score_opus":0.005551048065134394,"score_gpt":0.25960721762222155,"score_spread":0.25405616955708715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042303206","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944017,0.0022198493,0.00084048806,0.0021776722,0.00025707256,0.00008006618,0.000009538183,9.0645995e-7,0.0000127142275],"genre_scores_gemma":[0.99745744,0.0005575277,0.0018198234,0.0000627452,0.00008091808,7.5139724e-7,0.0000032824594,0.0000066962234,0.000010798592],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999254,0.00008901085,0.00031214824,0.00011424535,0.000106515356,0.00012410333],"domain_scores_gemma":[0.99887425,0.000014442821,0.00049720873,0.00018696261,0.0004053577,0.000021756623],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021481414,0.00010608662,0.00019718315,0.00003699773,0.00006593233,0.0000068169975,0.00020650345,0.0001770685,7.334111e-7],"category_scores_gemma":[0.00013590849,0.00005232944,0.00008280928,0.00006373071,0.0005370244,0.0000028353436,0.0001308866,0.00014762653,4.32491e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002807193,0.000019689976,0.0004325292,0.000011665103,0.00018636974,0.0000036752263,0.00006310976,0.00005413792,0.99674815,0.0005798253,0.000030829855,0.0015893144],"study_design_scores_gemma":[0.0006035981,0.0016909913,0.0013319884,0.000040109106,0.000048479058,0.00062734686,0.00035389274,5.9486376e-7,0.9890875,0.0034045386,0.0027471685,0.000063784006],"about_ca_topic_score_codex":0.000008719884,"about_ca_topic_score_gemma":0.00007245984,"teacher_disagreement_score":0.007660626,"about_ca_system_score_codex":0.000013959027,"about_ca_system_score_gemma":0.0000785299,"threshold_uncertainty_score":0.21339327},"labels":[],"label_agreement":null},{"id":"W2042422601","doi":"10.1128/jb.183.14.4183-4189.2001","title":"Identification of a DNA Binding Region in GerE from <i>Bacillus subtilis</i>","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"York University; National Science Foundation","keywords":"Biology; Bacillus subtilis; Binding site; Alanine; DNA; Biochemistry; Threonine; Mutant; DNA-binding protein; Conserved sequence; DNA-binding domain; Amino acid; Peptide sequence; Molecular biology; Genetics; Serine; Transcription factor; Gene; Phosphorylation; Bacteria","score_opus":0.011805671840787428,"score_gpt":0.23129742041514537,"score_spread":0.21949174857435794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042422601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99837846,0.00037328486,0.00025987753,0.0003696902,0.00049995515,0.00006360137,0.000013683272,0.0000024123847,0.00003906762],"genre_scores_gemma":[0.99767256,0.0017260463,0.00017569239,0.000057824185,0.00026668207,0.0000015948692,0.000031725463,0.0000110961155,0.000056761928],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987842,0.00009769441,0.0007043424,0.00017957742,0.00006387056,0.00017033503],"domain_scores_gemma":[0.9989265,0.00001630803,0.00065863546,0.00023213471,0.00012465009,0.000041776206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024848265,0.0001116639,0.00029621288,0.00016067647,0.000018120016,0.0000094958295,0.00025559028,0.0003728359,0.000018210572],"category_scores_gemma":[0.00010240809,0.00009966086,0.0001019771,0.00012613836,0.00011044569,0.000006445833,0.00007469825,0.00014790166,0.0000028982001],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034753227,0.000059337828,0.014564257,0.000004968105,0.000035930545,0.000026897706,0.000030762156,0.000005422438,0.98111206,0.000014483083,0.000104261955,0.0036940724],"study_design_scores_gemma":[0.0010343909,0.0007548288,0.07274221,0.000034975903,0.000024966495,0.0004442353,0.00009026907,0.000012879682,0.90633166,0.000256573,0.018125886,0.00014713405],"about_ca_topic_score_codex":0.000020966687,"about_ca_topic_score_gemma":0.000050543786,"teacher_disagreement_score":0.07478043,"about_ca_system_score_codex":0.000019733816,"about_ca_system_score_gemma":0.00006370269,"threshold_uncertainty_score":0.40640518},"labels":[],"label_agreement":null},{"id":"W2043617673","doi":"10.3389/fmicb.2015.00023","title":"The archaellum: how archaea swim","year":2015,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Max-Planck-Gesellschaft","keywords":"Archaea; Motility; Pilus; Flagellum; Biology; Function (biology); Mechanism (biology); Structure function; Bacteria; Computational biology; Cell biology; Genetics; Gene; Escherichia coli; Physics","score_opus":0.008615052571559739,"score_gpt":0.20513284302488982,"score_spread":0.1965177904533301,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043617673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97584456,0.008017641,0.0054707015,0.0061911,0.0036746375,0.00031712686,0.000038702525,0.000023186663,0.00042232437],"genre_scores_gemma":[0.9844949,0.001197958,0.0114405295,0.00044709776,0.00038826323,0.000033757595,0.00018502914,0.000029370362,0.0017830717],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988278,0.00014192151,0.00017253082,0.00036408362,0.000032700682,0.00046093317],"domain_scores_gemma":[0.99935514,0.000008970411,0.0000700269,0.0004346566,0.00005798874,0.000073243034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036771045,0.00016210372,0.00018137276,0.000068389316,0.00006929604,0.00002187828,0.0005022544,0.0003988322,0.0000015994596],"category_scores_gemma":[0.000119716904,0.0001196538,0.000060205944,0.00010960438,0.00059999485,0.0000015024559,0.00030920457,0.00018890761,0.000009415978],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015079169,0.000023993236,0.005246741,0.0000025566371,0.000037183047,0.0000054060242,0.000045498706,0.0000049118003,0.8998221,0.00020928572,0.085303314,0.009148233],"study_design_scores_gemma":[0.00058923324,0.00032012112,0.0003149086,0.0000029943624,0.000004784408,0.000059118647,0.00027417982,0.000016307362,0.1818683,0.001467474,0.81491065,0.00017190991],"about_ca_topic_score_codex":0.000014708858,"about_ca_topic_score_gemma":0.00016111555,"teacher_disagreement_score":0.72960734,"about_ca_system_score_codex":0.000027722032,"about_ca_system_score_gemma":0.00009863523,"threshold_uncertainty_score":0.48793402},"labels":[],"label_agreement":null},{"id":"W2043663542","doi":"10.1128/jb.186.23.7865-7873.2004","title":"Teichoic Acid Is an Essential Polymer in <i>Bacillus subtilis</i> That Is Functionally Distinct from Teichuronic Acid","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research","keywords":"Teichoic acid; Bacillus subtilis; Biology; Biochemistry; Cell wall; Complementation; Phosphate; Peptidoglycan; Mutant; Ribitol; Microbiology; Bacteria; Enzyme; Gene","score_opus":0.009464792996832332,"score_gpt":0.22598937694369003,"score_spread":0.2165245839468577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043663542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940184,0.0021696924,0.00032808154,0.0020432516,0.0011345987,0.00009596948,0.00013484564,0.000008584089,0.00006657099],"genre_scores_gemma":[0.99623936,0.00052184553,0.00047127594,0.0014646727,0.0010313691,0.0000047892313,0.00015032938,0.000033988952,0.00008235798],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998162,0.00011354865,0.00065636734,0.0004672482,0.00016629827,0.00043456056],"domain_scores_gemma":[0.99878174,0.000010412024,0.0004740337,0.00044389005,0.00013311833,0.00015679421],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021487415,0.00030099097,0.00047390818,0.00016567242,0.00006653175,0.000033091634,0.0005129754,0.00070775754,0.0004215069],"category_scores_gemma":[0.000040859442,0.00026179908,0.00022631831,0.0001275614,0.00032748672,0.000021244408,0.00018550229,0.0004054666,0.000021174614],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063898735,0.0001814558,0.0064176633,0.0000052043706,0.00014162977,0.00003833369,0.0000933738,0.0000046657883,0.99014,0.000022823788,0.00017358823,0.0021422438],"study_design_scores_gemma":[0.0021458715,0.0016481335,0.0611447,0.000022531563,0.00006094025,0.00031935054,0.00008763919,0.0000016315504,0.9224422,0.00047445318,0.011361241,0.0002912901],"about_ca_topic_score_codex":0.00015579784,"about_ca_topic_score_gemma":0.0005416132,"teacher_disagreement_score":0.067697816,"about_ca_system_score_codex":0.00005967515,"about_ca_system_score_gemma":0.0003302654,"threshold_uncertainty_score":0.99998343},"labels":[],"label_agreement":null},{"id":"W2043779847","doi":"10.1002/prot.10178","title":"Crystal structure of the YciO protein from <i>Escherichia coli</i>","year":2002,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Escherichia coli; Crystal structure; Chemistry; Protein crystallization; Bacterial protein; Protein structure; Structural genomics; Escherichia coli Proteins; Computational biology; Crystallography; Microbiology; Biology; Biochemistry; Crystallization; Gene","score_opus":0.005120262826242262,"score_gpt":0.17184300304776806,"score_spread":0.1667227402215258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043779847","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968944,0.00026937708,0.0010884303,0.00025870424,0.00030320062,0.0006134177,0.00036370434,0.000017523607,0.00019123759],"genre_scores_gemma":[0.99215156,0.00004121233,0.0070338007,0.00033761392,0.0001845509,0.0000065743857,0.0000776016,0.0000141541295,0.00015296252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991248,0.000030426616,0.00031652255,0.00018494992,0.00015401014,0.00018928363],"domain_scores_gemma":[0.99924904,0.0000029154335,0.00023174234,0.00038724343,0.000074300995,0.000054760814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000029075165,0.00020123772,0.00016840629,0.000032191052,0.00012938547,0.000037736616,0.00020198958,0.0004049144,0.00016897773],"category_scores_gemma":[0.000038467588,0.00013071483,0.00006716938,0.00014600437,0.00018746976,0.000008506062,0.00017735794,0.0001991189,0.0000015147964],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047348247,0.000014197515,0.00035693936,0.000042492702,0.00004413218,6.580563e-8,0.00006767043,0.000005024393,0.99525225,0.0001323183,0.00031441535,0.0037231515],"study_design_scores_gemma":[0.0007069524,0.0004064914,0.0045118406,0.000025833675,0.00003976252,0.000007350782,0.00008305221,0.0004933976,0.9632542,0.0009353797,0.029298987,0.00023673476],"about_ca_topic_score_codex":0.000018045605,"about_ca_topic_score_gemma":0.000060273716,"teacher_disagreement_score":0.031998027,"about_ca_system_score_codex":0.0000072450603,"about_ca_system_score_gemma":0.000023874729,"threshold_uncertainty_score":0.5330396},"labels":[],"label_agreement":null},{"id":"W2044035827","doi":"10.1139/cjm-2013-0300","title":"Regulatory evolution at the host–pathogen interface","year":2013,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Horizontal gene transfer; Gene; Host (biology); Blueprint; Genetics; Genome; Computational biology; Mobile genetic elements; Regulation of gene expression; Evolutionary biology","score_opus":0.003950320338236628,"score_gpt":0.17845585054542207,"score_spread":0.17450553020718543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044035827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920138,0.0048667765,0.00011537497,0.0019758986,0.00072203187,0.000110245106,0.00004218693,0.0000017952484,0.00015188486],"genre_scores_gemma":[0.9981235,0.00006393289,0.00013848484,0.00039461933,0.00026371432,0.0000025601423,0.000022901477,0.000012541092,0.0009776906],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992013,0.00008906515,0.0002517027,0.00014599493,0.000019784866,0.00029214323],"domain_scores_gemma":[0.9992199,0.000007071711,0.00017327727,0.0002658558,0.00017560966,0.00015830764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018671721,0.00011215169,0.0001358989,0.000077213335,0.000116802315,0.000017570224,0.00036593867,0.0003222843,0.00029274196],"category_scores_gemma":[0.000057313166,0.0000783153,0.000091449576,0.00005576744,0.00035933283,0.0000027004696,0.00007049878,0.0001535307,0.00007818651],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001194849,0.000003544877,0.0010177905,0.0000016301736,0.000037042846,0.0000031375207,0.000018189266,0.000006010658,0.97651255,0.00003697208,0.021716164,0.00063501345],"study_design_scores_gemma":[0.00025643286,0.0003865379,0.010339699,0.000008419447,0.00001615202,0.0012015973,0.00007049036,9.840171e-7,0.5574105,0.00008440405,0.43009847,0.0001263126],"about_ca_topic_score_codex":0.0006320599,"about_ca_topic_score_gemma":0.010702645,"teacher_disagreement_score":0.41910207,"about_ca_system_score_codex":0.000086959044,"about_ca_system_score_gemma":0.00041989613,"threshold_uncertainty_score":0.5972327},"labels":[],"label_agreement":null},{"id":"W2044653570","doi":"10.1007/s00203-007-0210-4","title":"N terminus determinants of MinC from Neisseria gonorrhoeae mediate interaction with FtsZ but do not affect interaction with MinD or homodimerization","year":2007,"lang":"en","type":"article","venue":"Archives of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Canadian Blood Services; University of Ottawa","funders":"Canadian Institutes of Health Research; University of Ottawa","keywords":"FtsZ; Cell division; Neisseria gonorrhoeae; Biology; Cell; Bacteria; Mutant; Bacterial cell structure; Amino acid; Protein–protein interaction; Point mutation; Cell biology; Peptide sequence; Plasma protein binding; Biochemistry; Microbiology; Genetics","score_opus":0.007235710879829955,"score_gpt":0.24184256002181193,"score_spread":0.23460684914198196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044653570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979259,0.00008530314,0.0011959738,0.000029766734,0.00025759367,0.00024156376,0.00016684558,0.0000070465744,0.00009002047],"genre_scores_gemma":[0.99484414,0.00013899946,0.0042976616,0.000033698005,0.0001081493,0.000007103115,0.0004715118,0.000025369196,0.0000733536],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880856,0.00007808427,0.00039454698,0.00042888377,0.000022533828,0.00026739034],"domain_scores_gemma":[0.99900085,0.000098078504,0.0004595008,0.0003404351,0.000052548512,0.000048561018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000088106404,0.00022818545,0.00034281577,0.00015007087,0.000036306355,0.000008350723,0.00022519816,0.00025634648,0.0000301724],"category_scores_gemma":[0.000036779522,0.00016263135,0.000064445005,0.00008652516,0.00038361154,0.000008139493,0.00011856789,0.00012529027,0.0000029312023],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006386352,0.00010591488,0.006675073,0.000025196063,0.000114587994,0.0000061232417,0.00015498002,0.000009582727,0.9514659,0.0000017892357,0.0000071736617,0.03504735],"study_design_scores_gemma":[0.0010201591,0.0028999748,0.019245919,0.00009003336,0.000059882117,0.00023964996,0.0002244734,0.000019797519,0.9740531,0.000007335829,0.0019340032,0.00020567182],"about_ca_topic_score_codex":0.00013158654,"about_ca_topic_score_gemma":0.0016353048,"teacher_disagreement_score":0.034841675,"about_ca_system_score_codex":0.000007970949,"about_ca_system_score_gemma":0.000068433874,"threshold_uncertainty_score":0.6631914},"labels":[],"label_agreement":null},{"id":"W2044775677","doi":"10.1073/pnas.1117783109","title":"Two copies of the SecY channel and acidic lipids are necessary to activate the SecA translocation ATPase","year":2012,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Chromosomal translocation; Dimer; Transport protein; ATPase; Translocase; Cell biology; Cytoplasm; Chemistry; Vesicle; Biophysics; Biochemistry; Membrane transport protein; Biology; Membrane protein; Membrane; Enzyme; Gene","score_opus":0.024271798099091392,"score_gpt":0.2784149417177735,"score_spread":0.25414314361868207,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044775677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881598,0.00043433643,0.0000016286021,0.011023997,0.00004264371,0.00015478038,0.000017295783,0.0000019127249,0.00016364879],"genre_scores_gemma":[0.9991477,0.00017372992,0.0001435723,0.00034928715,0.00014248728,0.000008036431,2.0948202e-7,0.000002823563,0.000032114847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993305,0.000008518486,0.00015579132,0.00012916846,0.00026147807,0.00011453367],"domain_scores_gemma":[0.9995957,0.000014907159,0.00023010612,0.00001664532,0.00012097654,0.000021670467],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054673024,0.0000683272,0.00008346743,0.00003610377,0.00013627634,0.000009078302,0.00051503564,0.00009752519,0.0000014461317],"category_scores_gemma":[0.000119091914,0.00003401536,0.000039449387,0.00028324383,0.0008026655,0.000015250305,0.00015863916,0.00007849849,1.2479832e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016818583,0.000018907895,0.0037905187,0.000021362772,0.000010278012,1.9902341e-10,0.00016691755,0.000012297736,0.99362916,0.0017428244,0.00014062892,0.000450297],"study_design_scores_gemma":[0.00009519415,0.000044360957,0.0667676,0.00003169977,0.000007774701,0.0000032870062,0.00031971352,0.000023337458,0.9307917,0.0012278617,0.0006449515,0.000042549655],"about_ca_topic_score_codex":0.000005939164,"about_ca_topic_score_gemma":6.8439255e-7,"teacher_disagreement_score":0.06297708,"about_ca_system_score_codex":0.000004302592,"about_ca_system_score_gemma":0.000016852418,"threshold_uncertainty_score":0.29574543},"labels":[],"label_agreement":null},{"id":"W2044925360","doi":"10.1016/j.bbamem.2011.06.018","title":"Structural characterization of AS1–membrane interactions from a subset of HAMP domains","year":2011,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Centre for Blood Research, University of British Columbia; National Institutes of Health; Vetenskapsrådet; Deutsche Forschungsgemeinschaft","keywords":"HAMP; Bacterial outer membrane; Transmembrane protein; Biophysics; Transmembrane domain; Membrane protein; Membrane; Biochemistry; Chemistry; Model lipid bilayer; Biology; Crystallography; Lipid bilayer; Escherichia coli; Receptor","score_opus":0.01747346367188833,"score_gpt":0.23382415857148525,"score_spread":0.2163506948995969,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044925360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99737245,0.00004218901,0.000033660537,0.00024677883,0.0004896186,0.00028156044,0.0013345304,0.00003525947,0.00016396913],"genre_scores_gemma":[0.99616504,0.00038916865,0.0007075047,0.00009386445,0.00023621177,0.000016280506,0.0022766548,0.000045851422,0.000069414724],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982521,0.00010012032,0.0006031687,0.00056321605,0.00017279337,0.00030863058],"domain_scores_gemma":[0.9984409,0.000019377334,0.0005556346,0.0007285949,0.00016273535,0.000092736904],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000085872656,0.00034803795,0.00046210995,0.00019675064,0.000067088746,0.000021841926,0.00052195427,0.00037402762,0.000110442634],"category_scores_gemma":[0.00002984544,0.00031411878,0.00024144119,0.00034133098,0.00045792756,0.000020314095,0.00024163697,0.00013790827,0.0000075929574],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046789416,0.00020860347,0.000044386485,0.0000602952,0.00023834409,0.0000012668279,0.00028817475,2.2520581e-7,0.9981624,0.000099294724,0.000024419549,0.0004046849],"study_design_scores_gemma":[0.00060823356,0.0004386375,0.025769316,0.000042465792,0.000085167114,0.000009522933,0.00006011395,0.000029911538,0.9719779,0.000114565024,0.0005346016,0.00032955184],"about_ca_topic_score_codex":0.00021754541,"about_ca_topic_score_gemma":0.0000510506,"teacher_disagreement_score":0.026184497,"about_ca_system_score_codex":0.000010082214,"about_ca_system_score_gemma":0.00008235803,"threshold_uncertainty_score":0.9999311},"labels":[],"label_agreement":null},{"id":"W2045006378","doi":"10.1016/j.bbamem.2009.06.010","title":"Cardiolipin and the osmotic stress responses of bacteria","year":2009,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":239,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Osmotic shock; Cardiolipin; Symporter; Osmoregulation; Mechanosensitive channels; Biochemistry; Chemistry; Osmotic concentration; Osmotic pressure; Biophysics; Phosphatidylglycerol; Phosphatidic acid; Phosphatidylethanolamine; Bacillus subtilis; Osmoprotectant; Escherichia coli; Bacteria; Phospholipid; Biology; Transporter; Membrane; Phosphatidylcholine; Amino acid; Ion channel; Gene","score_opus":0.017630214139606245,"score_gpt":0.2812097951335222,"score_spread":0.26357958099391593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045006378","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.21689883,0.77993125,0.0000018839405,0.0005816456,0.0003960901,0.001023135,0.0010293261,0.00003875101,0.000099094206],"genre_scores_gemma":[0.05364518,0.94426733,0.00013887974,0.00012680567,0.0005952166,0.000059975944,0.0008594921,0.00008973716,0.00021737337],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966068,0.00071909645,0.0009237422,0.000999987,0.00023229679,0.0005180464],"domain_scores_gemma":[0.9974631,0.0001397538,0.0007864132,0.001380681,0.000106832544,0.00012319352],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042309207,0.000856281,0.002104016,0.00026968797,0.00013128293,0.00011617765,0.0010314275,0.0011603481,0.000007662853],"category_scores_gemma":[0.0001233058,0.0005532717,0.00084428524,0.00044356097,0.001318405,0.000006732914,0.0005759193,0.00034393827,0.000007953934],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057746226,0.00015763631,1.5682296e-7,0.003825402,0.0008997384,0.0000045276415,0.000047851172,1.11150214e-7,0.8951525,0.00018912251,0.00036861646,0.09877687],"study_design_scores_gemma":[0.0011740989,0.0006411228,0.00008443181,0.0018229346,0.0012630232,0.00010926076,0.00002491798,0.0000016403142,0.42746708,0.00007412375,0.5664159,0.0009214489],"about_ca_topic_score_codex":0.000029223513,"about_ca_topic_score_gemma":0.000007026825,"teacher_disagreement_score":0.5660473,"about_ca_system_score_codex":0.00001591695,"about_ca_system_score_gemma":0.00028828013,"threshold_uncertainty_score":0.9996919},"labels":[],"label_agreement":null},{"id":"W2045254934","doi":"10.1021/bi700332h","title":"Intermediate Release by ADP-<scp>l</scp>-<i>glycero</i>-<scp>d</scp>-<i>manno</i>-heptose 6-Epimerase","year":2007,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Heptose; Chemistry; Stereochemistry; Moiety; Biosynthesis; Borohydride; Cofactor; Reaction intermediate; Epimer; Enzyme; Biochemistry; Catalysis","score_opus":0.004516414213921337,"score_gpt":0.21683682308070612,"score_spread":0.21232040886678477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045254934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98800033,0.0047505833,0.0004773333,0.00012099282,0.000770508,0.00032694428,0.00037812052,0.0001609522,0.0050142077],"genre_scores_gemma":[0.980913,0.0015579534,0.00075948256,0.0011607287,0.0014909301,0.00004403869,0.0017368383,0.00013976257,0.012197301],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9960195,0.000059411723,0.0008072489,0.0013744485,0.00037240147,0.001367007],"domain_scores_gemma":[0.99722946,0.00013165102,0.00040547273,0.0013664069,0.00022693392,0.00064006314],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005036805,0.0007516814,0.0005006238,0.00010988117,0.00020980551,0.000109963534,0.0010264713,0.0016073582,0.00003085081],"category_scores_gemma":[0.0012039256,0.0007782619,0.00033678504,0.00035089598,0.00055187,0.000010912175,0.00067172816,0.0005861706,0.00013490852],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004588765,0.0002628416,0.0008401902,0.00008533061,0.00012006117,0.0000476609,0.000038116064,0.0000010867461,0.8669711,0.000011780079,0.12920153,0.0023744295],"study_design_scores_gemma":[0.0008878381,0.00029006033,0.00025869155,0.00003200183,0.00004911873,0.000066102555,0.00024167806,0.000010947372,0.69011956,0.000034282744,0.3078362,0.00017352235],"about_ca_topic_score_codex":0.00003116928,"about_ca_topic_score_gemma":0.000014575079,"teacher_disagreement_score":0.17863467,"about_ca_system_score_codex":0.00007109578,"about_ca_system_score_gemma":0.00020638878,"threshold_uncertainty_score":0.99968874},"labels":[],"label_agreement":null},{"id":"W2045258620","doi":"10.1002/pro.2069","title":"The bacterial outer membrane β‐barrel assembly machinery","year":2012,"lang":"en","type":"review","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Canadian Institutes of Health Research","keywords":"Barrel (horology); Bacterial outer membrane; Bacteria; Biology; Cell biology; Protein folding; Function (biology); Folding (DSP implementation); Biophysics; Biochemistry; Escherichia coli; Materials science; Genetics; Engineering","score_opus":0.026815885652949796,"score_gpt":0.29696266477569844,"score_spread":0.27014677912274865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045258620","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015153033,0.9950199,0.00004128315,0.0001077104,0.0016930425,0.0010226599,0.00003833909,0.000023883507,0.0005378628],"genre_scores_gemma":[0.0016063189,0.99480987,0.0006010818,0.000031925978,0.0014719091,0.00024040468,0.00006654133,0.000044973396,0.0011270029],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99762404,0.00012881332,0.0004534414,0.00072629686,0.00030494103,0.000762496],"domain_scores_gemma":[0.9983235,0.000016347292,0.00031769407,0.0010862144,0.00009859266,0.00015764624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012202947,0.00040273764,0.0005223204,0.00008884776,0.00045609285,0.00026006947,0.0018307746,0.0005888636,0.000021956688],"category_scores_gemma":[0.0001767546,0.00023718344,0.00024877404,0.0003635343,0.0009359647,0.0000076035926,0.0009947873,0.00032121534,0.00009513813],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001183048,0.000019833617,3.2476876e-7,0.0003225442,0.000024199158,0.0000011959036,0.000002473099,2.5113776e-8,0.24380752,0.00017359575,0.00006450408,0.75557196],"study_design_scores_gemma":[0.000074757125,0.00012200835,0.0000018653545,0.000227187,0.0000697743,0.000051631825,0.00000135899,9.1982173e-7,0.038405854,0.000015041948,0.9607046,0.00032497736],"about_ca_topic_score_codex":0.0000084664725,"about_ca_topic_score_gemma":0.000015350457,"teacher_disagreement_score":0.96064013,"about_ca_system_score_codex":0.000033521377,"about_ca_system_score_gemma":0.0005757205,"threshold_uncertainty_score":0.967206},"labels":[],"label_agreement":null},{"id":"W2045394548","doi":"10.1074/jbc.m404749200","title":"Biochemical Characterization of WbpA, a UDP-N-acetyl-d-glucosamine 6-Dehydrogenase Involved in O-antigen Biosynthesis in Pseudomonas aeruginosa PAO1","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; Institute for Biological Sciences","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of St Andrews; McMaster University; University of Guelph","keywords":"Chemistry; NAD+ kinase; Enzyme kinetics; Dehydrogenase; Pseudomonas putida; Stereochemistry; Enzyme; Biochemistry; Chromatography; Active site","score_opus":0.012125045409485205,"score_gpt":0.22260711013167536,"score_spread":0.21048206472219017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045394548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99857295,0.0006308511,0.00009043646,0.00042835047,0.000075089614,0.00011585707,0.000038822844,0.000005921187,0.000041707088],"genre_scores_gemma":[0.9966383,0.0020419322,0.0008706392,0.00007768469,0.00021435067,0.000005607271,0.00012950804,0.00001457725,0.000007378442],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99824643,0.000053386233,0.00089587254,0.000336228,0.00014203964,0.0003260278],"domain_scores_gemma":[0.9989909,0.000018659151,0.0005005075,0.00025978303,0.00011982747,0.00011033501],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035071484,0.0002446027,0.0005068689,0.00009819035,0.000018222572,0.000011011155,0.00040115212,0.0008479922,0.000032396387],"category_scores_gemma":[0.00031924024,0.00019551699,0.00019227799,0.00028967662,0.00024661698,0.00000649727,0.00015547706,0.00030191167,0.0000012508838],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004161266,0.00043256753,0.008589539,0.00003454102,0.000036401503,0.000039024962,0.000015461685,0.000014579991,0.98984593,0.000007770485,0.000007643129,0.0005603938],"study_design_scores_gemma":[0.0015222075,0.00042827745,0.010258536,0.00009081095,0.000009830783,0.000084567844,0.000047041496,0.0000053553367,0.9864341,0.00011192792,0.0007891733,0.0002181442],"about_ca_topic_score_codex":0.000011360597,"about_ca_topic_score_gemma":0.000007546473,"teacher_disagreement_score":0.0034118223,"about_ca_system_score_codex":0.000055116852,"about_ca_system_score_gemma":0.00013431897,"threshold_uncertainty_score":0.79729515},"labels":[],"label_agreement":null},{"id":"W2045446039","doi":"10.1186/1471-2148-7-s1-s8","title":"The role of laterally transferred genes in adaptive evolution","year":2007,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Adaptation (eye); Phylogenetic tree; Gene; Horizontal gene transfer; Phylogenetics; Evolutionary biology; Bacterial genome size; Selection (genetic algorithm); Genome evolution; Genetics; Phylogenomics; Computational biology; Clade","score_opus":0.007124382343031654,"score_gpt":0.22358553216941607,"score_spread":0.21646114982638442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045446039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9825245,0.010176073,0.0061118444,0.00008878758,0.0002504053,0.00020914864,0.000033598473,0.000011518544,0.00059411244],"genre_scores_gemma":[0.99762464,0.0003841042,0.0016430749,0.000017481747,0.0001582341,0.000013180246,0.00007648887,0.000010051616,0.000072722265],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99890363,0.00009486615,0.00033929545,0.00027766541,0.000052296775,0.00033225253],"domain_scores_gemma":[0.99951535,0.000037700767,0.000078343364,0.0002521235,0.000082577426,0.000033904413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033863803,0.0001278773,0.00013877389,0.00007932396,0.00007788039,0.0000028532857,0.00024836298,0.00040094607,0.0000057287093],"category_scores_gemma":[0.00003744082,0.000098350625,0.00007876783,0.00013982687,0.00033807234,0.0000022858198,0.0000879244,0.00009168506,0.0000040438695],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054040225,0.000050666382,0.05799079,0.0000024902665,0.000019853065,4.8180425e-7,0.000009506412,0.000025294321,0.9234172,0.011608145,0.000022455866,0.0063127163],"study_design_scores_gemma":[0.0009648591,0.0013349587,0.5068128,0.000010794455,0.000014171229,0.000041758994,0.00027754114,0.00034455655,0.42180395,0.014969945,0.053117964,0.00030665865],"about_ca_topic_score_codex":0.00010027471,"about_ca_topic_score_gemma":0.0011849836,"teacher_disagreement_score":0.50161326,"about_ca_system_score_codex":0.000030437119,"about_ca_system_score_gemma":0.00011079282,"threshold_uncertainty_score":0.4010622},"labels":[],"label_agreement":null},{"id":"W2045579841","doi":"10.1016/j.resmic.2005.09.005","title":"The C-terminus of MinE from Neisseria gonorrhoeae acts as a topological specificity factor by modulating MinD activity in bacterial cell division","year":2005,"lang":"en","type":"article","venue":"Research in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Ottawa","funders":"","keywords":"Neisseria gonorrhoeae; Mutant; Biology; Escherichia coli; Phenotype; C-terminus; FtsZ; ATPase; Cell biology; Biochemistry; Amino acid; Gene; Genetics; Enzyme","score_opus":0.030216006617567147,"score_gpt":0.3202988011290087,"score_spread":0.2900827945114416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045579841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980116,0.00052820164,0.000009523328,0.00057840784,0.00018561365,0.00032835317,0.00020627526,0.0000035538785,0.00014847693],"genre_scores_gemma":[0.998696,0.00046015737,0.00026648573,0.000017238479,0.00021605345,0.000014327856,0.00018221438,0.000014931097,0.00013253729],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997706,0.0005784486,0.00040074284,0.00058524497,0.00004925809,0.0006803237],"domain_scores_gemma":[0.99909204,0.00019457097,0.00012260929,0.00045344743,0.000068634596,0.0000687195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006262316,0.00019364827,0.0003042244,0.0001068086,0.0000887946,0.00003093391,0.0005467972,0.0007161314,0.00012357974],"category_scores_gemma":[0.00018841377,0.00014595588,0.000067497516,0.00017739726,0.00049989636,0.0000057628818,0.0005886523,0.00047023385,0.000020068464],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056454353,0.00023282414,0.0031587214,0.0000055464784,0.00001017116,0.0000029093828,0.000032285083,0.0000067566693,0.98129106,0.000006836187,0.00011936348,0.0145689575],"study_design_scores_gemma":[0.0007854362,0.000623705,0.016314475,0.000013025456,0.0000013815003,0.0000066740267,0.000041641808,0.00004140016,0.9426008,0.000062375686,0.039360438,0.00014863689],"about_ca_topic_score_codex":0.00050623366,"about_ca_topic_score_gemma":0.0016893575,"teacher_disagreement_score":0.03924107,"about_ca_system_score_codex":0.00006887053,"about_ca_system_score_gemma":0.000103782426,"threshold_uncertainty_score":0.5951908},"labels":[],"label_agreement":null},{"id":"W2045864842","doi":"10.1128/jb.182.18.5251-5255.2000","title":"The Amino Terminus of <i>Pseudomonas aeruginosa</i> Outer Membrane Protein OprF Forms Channels in Lipid Bilayer Membranes: Correlation with a Three-Dimensional Model","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Porin; Biology; Circular dichroism; Lipid bilayer; Bacterial outer membrane; Peptide sequence; Biophysics; Bilayer; Protein structure; Membrane; Biochemistry; Escherichia coli; Crystallography; Chemistry; Gene","score_opus":0.007637400299812596,"score_gpt":0.20756085196036198,"score_spread":0.19992345166054937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045864842","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99817693,0.00026928537,0.00025364172,0.0006813333,0.00020581238,0.0002991862,0.000013370585,0.000004043675,0.00009640414],"genre_scores_gemma":[0.997977,0.000258693,0.0010579166,0.00014189056,0.00022403109,0.000016772852,0.000020402442,0.0000234955,0.00027975396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99846345,0.000081787315,0.0007234812,0.0002490937,0.00015251176,0.00032966828],"domain_scores_gemma":[0.9989524,0.000026426116,0.0004715775,0.00031363743,0.00016770343,0.00006824346],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003793145,0.00022588977,0.00041861422,0.00010809957,0.00006595979,0.000019383548,0.00035410785,0.0004261141,0.000035325607],"category_scores_gemma":[0.000029525527,0.00013346133,0.00012945879,0.00011546966,0.00028555287,0.000014684368,0.00007464475,0.00028288263,0.0000031972702],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021793724,0.0001081795,0.00057095167,0.000020413556,0.00008073963,0.000026665462,0.000036821748,0.005580387,0.9845594,0.000035135912,0.0000285273,0.0067733736],"study_design_scores_gemma":[0.0043585263,0.0045838426,0.004086365,0.00017899471,0.00007169147,0.0021539407,0.000035679284,0.0066486043,0.9650701,0.00055814703,0.011754454,0.00049959804],"about_ca_topic_score_codex":0.000017511673,"about_ca_topic_score_gemma":0.00012734745,"teacher_disagreement_score":0.019489277,"about_ca_system_score_codex":0.000018703913,"about_ca_system_score_gemma":0.00017630732,"threshold_uncertainty_score":0.5442395},"labels":[],"label_agreement":null},{"id":"W2046017517","doi":"10.1074/jbc.m111682200","title":"Characterizing the DNA Contacts and Cooperative Binding of F Plasmid TraM to Its Cognate Sites at oriT","year":2002,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Inverted repeat; Footprinting; DNA; Biology; Deoxyribonuclease I; Direct repeat; Binding site; DNA footprinting; DNA binding site; Plasmid; Genetics; Molecular biology; DNA-binding protein; Gene; Promoter; Transcription factor; Genome; Gene expression","score_opus":0.027478082730485576,"score_gpt":0.2377172634964831,"score_spread":0.2102391807659975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046017517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976386,0.000972888,0.0000055210376,0.00097171793,0.00006935897,0.000079478334,0.00004200911,0.00000333926,0.00021712574],"genre_scores_gemma":[0.99786085,0.0013483707,0.00010261634,0.0002428106,0.00021277963,0.0000022593547,0.000013306591,0.0000070819356,0.00020992121],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991615,0.000034446533,0.0003471532,0.00018394346,0.00008237047,0.00019058476],"domain_scores_gemma":[0.999338,0.000036669757,0.0002662909,0.000118081574,0.00013857745,0.000102409875],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017578283,0.00014518901,0.00025926923,0.000018062829,0.0000734232,0.000019438014,0.00022749764,0.00031394424,0.00011618141],"category_scores_gemma":[0.00025625937,0.00008588516,0.00008108635,0.00007531411,0.00014001213,0.0000031829054,0.00018731198,0.0001388976,0.0000034860414],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014359152,0.000046193727,0.00082985533,0.000013852777,0.00004686344,0.000007560442,0.0000353848,0.0000011344603,0.9981295,0.000004146911,0.00023555288,0.0005063599],"study_design_scores_gemma":[0.00038411398,0.0006502784,0.0014072646,0.00002652341,0.000015019357,0.00018421926,0.000059824928,0.000009083582,0.9842847,0.000003593351,0.0128598455,0.00011551887],"about_ca_topic_score_codex":2.5775222e-7,"about_ca_topic_score_gemma":8.222803e-7,"teacher_disagreement_score":0.013844789,"about_ca_system_score_codex":0.000013585173,"about_ca_system_score_gemma":0.000012633012,"threshold_uncertainty_score":0.35022953},"labels":[],"label_agreement":null},{"id":"W2046027302","doi":"10.1016/j.biocel.2005.08.018","title":"Bacterial histidine kinase as signal sensor and transducer","year":2005,"lang":"en","type":"review","venue":"The International Journal of Biochemistry & Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Response regulator; Histidine kinase; Signal transduction; Kinase; Biology; Cell biology; Two-component regulatory system; Serine; Phosphorylation; Regulator; Histidine; Biochemistry; Bacteria; Enzyme; Genetics; Bacterial protein; Mutant","score_opus":0.01422220316557635,"score_gpt":0.28362395824353553,"score_spread":0.26940175507795916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046027302","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04883016,0.94861144,0.000022188733,0.00059142185,0.0011907957,0.00016158399,0.0002195595,0.000006344577,0.0003664853],"genre_scores_gemma":[0.013975411,0.979492,0.00032050398,0.00016312332,0.0049374704,0.000007401971,0.00039413513,0.00004101623,0.000668946],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99816513,0.00012133489,0.00085133733,0.0004118944,0.00017304733,0.00027722653],"domain_scores_gemma":[0.9983436,0.000056376943,0.00088930345,0.0003231048,0.00027035014,0.00011726926],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00034840702,0.00043162264,0.00076643203,0.00010179038,0.000054859698,0.00005643326,0.0011979457,0.0009612085,0.00025105456],"category_scores_gemma":[0.00007578135,0.00028610733,0.000467326,0.000060663227,0.0003746843,0.0000032756495,0.00031779936,0.00049719226,0.000014273838],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016216408,0.000065144435,9.0899164e-7,0.00014286287,0.000348264,0.000022296706,0.0000058465457,4.16154e-7,0.63766664,0.000008679518,0.0006503309,0.36092642],"study_design_scores_gemma":[0.0004065103,0.00029504934,3.8371633e-7,0.0002083481,0.00024408753,0.001090292,0.000009465452,5.57542e-7,0.23759125,0.000020705,0.7599049,0.00022844662],"about_ca_topic_score_codex":0.000007817359,"about_ca_topic_score_gemma":0.0000022379324,"teacher_disagreement_score":0.7592546,"about_ca_system_score_codex":0.000060945014,"about_ca_system_score_gemma":0.00046102487,"threshold_uncertainty_score":0.9999591},"labels":[],"label_agreement":null},{"id":"W2046219181","doi":"10.1074/jbc.m809656200","title":"Inhibitory Mechanism of Escherichia coli RelE-RelB Toxin-Antitoxin Module Involves a Helix Displacement Near an mRNA Interferase Active Site","year":2009,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"RELB; Escherichia coli; Helix (gastropod); Biophysics; Antitoxin; Chemistry; Mutant; Cell biology; Stereochemistry; Toxin; Biology; Biochemistry; Transcription factor; Gene","score_opus":0.01159826874269601,"score_gpt":0.23940006168321648,"score_spread":0.22780179294052047,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046219181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984699,0.0004935458,0.0002881325,0.00028096637,0.00017468416,0.00010590839,0.000048516154,0.000010279009,0.00012806298],"genre_scores_gemma":[0.9963776,0.0006182957,0.0021219226,0.00025358392,0.00048688328,0.0000026789194,0.00005960217,0.00001292116,0.00006652035],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984905,0.000075764925,0.00062964443,0.0003413506,0.00016731054,0.00029539943],"domain_scores_gemma":[0.9986922,0.000012591805,0.0005682157,0.00032787703,0.00021274778,0.00018635405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027002997,0.00026042486,0.00042911564,0.000031201,0.00006409139,0.000029773208,0.00040660342,0.00069000514,0.000062220446],"category_scores_gemma":[0.0001355493,0.00019664045,0.00022497073,0.00010488292,0.0002165741,0.000010350159,0.00016017203,0.00037302458,0.0000019620734],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00094514724,0.0004612552,0.00015069371,0.000019216517,0.000073358846,0.000016519884,0.000031696854,0.000014292222,0.99671364,0.000035761706,0.00018105208,0.0013573528],"study_design_scores_gemma":[0.0008122046,0.0034498114,0.0009501781,0.000048752947,0.000029846911,0.00004919917,0.00011061467,0.00005225167,0.991652,0.00034754936,0.002262999,0.00023460794],"about_ca_topic_score_codex":0.000004231595,"about_ca_topic_score_gemma":0.0000022132497,"teacher_disagreement_score":0.005061669,"about_ca_system_score_codex":0.000036270227,"about_ca_system_score_gemma":0.00010903181,"threshold_uncertainty_score":0.8018765},"labels":[],"label_agreement":null},{"id":"W2046705713","doi":"10.1016/j.ab.2004.12.018","title":"Restriction analysis of recombinant plasmids from colonies in less than 30 min","year":2005,"lang":"en","type":"article","venue":"Analytical Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"","keywords":"Recombinant DNA; Plasmid; Biology; Genetics; Gene","score_opus":0.009813862210283582,"score_gpt":0.2445948953309207,"score_spread":0.2347810331206371,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046705713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985276,0.00030268842,0.000043569533,0.00045517148,0.00007219365,0.00005412533,0.00007471967,0.000009366357,0.00046056998],"genre_scores_gemma":[0.998216,0.00044242252,0.00037063402,0.000057019275,0.00012347488,0.00000652587,0.00045676503,0.000010384512,0.00031681868],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987636,0.000027960177,0.0003948971,0.00044684368,0.00012024978,0.00024644774],"domain_scores_gemma":[0.9992983,0.000022849748,0.00011283086,0.00043221167,0.000060679587,0.000073179945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011371375,0.00016558118,0.0003316807,0.00013431902,0.00002514984,0.000014102879,0.00024583715,0.0005225561,0.000079535166],"category_scores_gemma":[0.00009699472,0.00016039364,0.00017708726,0.00052580936,0.00018732745,0.0000022779298,0.00013088278,0.00013599287,0.0000057254483],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011040824,0.00020611678,0.030308299,0.00000886863,0.00042947367,0.0000031378781,0.000008332677,0.000090532165,0.96639043,0.000073243515,0.000502598,0.0018685696],"study_design_scores_gemma":[0.00040268747,0.00012685715,0.025918234,0.000012848125,0.00029273977,0.0000010871262,0.000072274095,0.0013975847,0.9681184,0.00005633921,0.003398631,0.00020227373],"about_ca_topic_score_codex":0.00020803299,"about_ca_topic_score_gemma":0.00030527514,"teacher_disagreement_score":0.004390064,"about_ca_system_score_codex":0.000034114164,"about_ca_system_score_gemma":0.000060858463,"threshold_uncertainty_score":0.65406626},"labels":[],"label_agreement":null},{"id":"W2046751600","doi":"10.1186/1471-2180-9-118","title":"Polymorphism and selection of rpoS in pathogenic Escherichia coli","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"rpoS; Mutant; Escherichia coli; Biology; Verocytotoxin; Pathogenic Escherichia coli; Microbiology; Gene; VTEC; Genetics; Phenotype; Enterobacteriaceae; Mutation; Gene expression","score_opus":0.00577268627162239,"score_gpt":0.20575737390248658,"score_spread":0.1999846876308642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046751600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860674,0.00085224427,0.00013388273,0.00011383733,0.00006951486,0.00013310235,0.000016726872,0.0000073836122,0.000066539345],"genre_scores_gemma":[0.9972508,0.0002497716,0.0020945151,0.0001996805,0.000059245882,0.0000037717755,0.000048186223,0.000006976678,0.00008705574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926364,0.000060939987,0.00020250515,0.000266068,0.000012210995,0.00019461443],"domain_scores_gemma":[0.99974895,0.000004894501,0.00007681225,0.0001175095,0.000026957601,0.000024903959],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000933297,0.000110937224,0.00016885201,0.000066572255,0.000019021185,0.0000035897017,0.00009805268,0.0003892571,0.000014614448],"category_scores_gemma":[0.000023085515,0.0001068341,0.000037719186,0.000098599805,0.00009876298,0.0000010412638,0.000053854725,0.000075096235,0.000002062286],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010393801,0.00004887426,0.004200787,0.00000562133,0.000007572427,5.161316e-7,0.000008058093,0.0000018475005,0.9938177,0.00011660184,0.00008729856,0.0016012118],"study_design_scores_gemma":[0.0006136657,0.00077976193,0.049979348,0.0000052371197,0.0000076048827,0.000057354042,0.000009310759,0.000010210596,0.942123,0.00010060675,0.0061836266,0.00013025773],"about_ca_topic_score_codex":0.00001671041,"about_ca_topic_score_gemma":0.00015755965,"teacher_disagreement_score":0.051694654,"about_ca_system_score_codex":0.0000067069705,"about_ca_system_score_gemma":0.00004931597,"threshold_uncertainty_score":0.43565682},"labels":[],"label_agreement":null},{"id":"W2046910415","doi":"10.1073/pnas.1400341111","title":"Trapped translocation intermediates establish the route for export of capsular polysaccharides across <i>Escherichia coli</i> outer membranes","year":2014,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Periplasmic space; Escherichia coli; Bacterial outer membrane; Polysaccharide; Biochemistry; Secretion; Bacteria; Cell wall; Biology; Inner membrane; Membrane; Chemistry; Biophysics; Genetics; Gene","score_opus":0.019509212247127223,"score_gpt":0.2765031755134082,"score_spread":0.256993963266281,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046910415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99697053,0.00021477748,0.00003082116,0.0023839565,0.0000431497,0.00021976834,0.000050232567,0.0000035716214,0.00008320689],"genre_scores_gemma":[0.99852914,0.00018811741,0.00082517654,0.00027648348,0.000118209944,0.000022978078,0.0000016371499,0.0000049130076,0.000033353135],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990662,0.0000068262075,0.00030841253,0.00020369234,0.00027320738,0.00014171547],"domain_scores_gemma":[0.9993225,0.00003076654,0.0003539756,0.000018312141,0.00025723412,0.000017233802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010157248,0.00008862476,0.0001408696,0.000033376313,0.00011250929,0.000019026395,0.0007356758,0.00015754612,0.0000013588175],"category_scores_gemma":[0.00022532542,0.000052567397,0.000093921146,0.00020942457,0.00086764083,0.00001675461,0.00006651816,0.00006601703,7.13599e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033987213,0.00002320883,0.00072726153,0.000050995426,0.000018489985,3.944829e-10,0.00016028949,0.000012621814,0.996627,0.0013873907,0.00009858786,0.00086018484],"study_design_scores_gemma":[0.0002097547,0.0001294889,0.006944056,0.000022848424,0.0000123814325,0.0000016552907,0.00017482972,0.0002649355,0.9875284,0.0027591826,0.001888665,0.00006381309],"about_ca_topic_score_codex":0.000007451945,"about_ca_topic_score_gemma":9.676068e-7,"teacher_disagreement_score":0.009098592,"about_ca_system_score_codex":0.000003785932,"about_ca_system_score_gemma":0.000026745385,"threshold_uncertainty_score":0.31968588},"labels":[],"label_agreement":null},{"id":"W2048990446","doi":"10.1074/jbc.m300706200","title":"Purified, Recombinant TagF Protein from Bacillus subtilis 168 Catalyzes the Polymerization of Glycerol Phosphate onto a Membrane Acceptor in Vitro","year":2003,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"","keywords":"Bacillus subtilis; Teichoic acid; Recombinant DNA; Biochemistry; Glycerol; Escherichia coli; Enzyme; Membrane; Chemistry; Biology; Molecular biology; Bacteria; Gene","score_opus":0.010325283499886253,"score_gpt":0.2109305641950051,"score_spread":0.20060528069511885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048990446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99672204,0.0024250927,0.0000611332,0.00031079524,0.00015813147,0.00014946608,0.00004421991,0.0000033312485,0.00012579438],"genre_scores_gemma":[0.9983105,0.0008424479,0.00048556595,0.00005558262,0.00013664673,0.000009690922,0.000064036314,0.0000109470375,0.000084573345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867904,0.000097098775,0.00060115644,0.00025365368,0.000127953,0.00024111032],"domain_scores_gemma":[0.99900854,0.000023884379,0.0004992514,0.00028589013,0.00010927778,0.00007315062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030820633,0.00019014021,0.00034794095,0.000023051438,0.000038002927,0.000018318555,0.00041310408,0.000571581,0.00013226307],"category_scores_gemma":[0.0003559354,0.0001168427,0.00016226077,0.00013410414,0.0002045104,0.0000040856476,0.00008758144,0.00027586252,0.0000011057307],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007641748,0.00013031236,0.00041649895,0.0000143561565,0.00005064861,0.000006610448,0.000017428463,0.0000030074896,0.9968868,0.0000061409164,0.000024145333,0.0016798596],"study_design_scores_gemma":[0.00091377954,0.00029666003,0.0005420823,0.00002169855,0.000015572348,0.000035738343,0.00010662666,0.0000031956936,0.99260366,0.00011708424,0.005199611,0.00014431008],"about_ca_topic_score_codex":0.000040303927,"about_ca_topic_score_gemma":0.000006479144,"teacher_disagreement_score":0.0051754657,"about_ca_system_score_codex":0.00002288379,"about_ca_system_score_gemma":0.000099914,"threshold_uncertainty_score":0.4764707},"labels":[],"label_agreement":null},{"id":"W2050171234","doi":"10.1128/jb.00155-11","title":"Characterization of DNA Binding Sites of the ComE Response Regulator from Streptococcus mutans","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Dental and Craniofacial Research; National Institutes of Health","keywords":"Biology; Footprinting; Direct repeat; Binding site; DNA footprinting; DNA; Streptococcus gordonii; Streptococcus mutans; Deoxyribonuclease I; Genetics; Genome; Molecular biology; DNA-binding protein; Gene; Transcription factor; Bacteria; Streptococcus; Base sequence","score_opus":0.014034489016588303,"score_gpt":0.22006378431609472,"score_spread":0.20602929529950642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050171234","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99903834,0.000049613736,0.00004253302,0.00012711238,0.0004853014,0.00010359159,0.00012915499,0.0000022273164,0.000022114402],"genre_scores_gemma":[0.9992506,0.00009629473,0.0003862004,0.000039385275,0.00014742692,0.0000014416606,0.00003229762,0.000011539052,0.000034845252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987818,0.00023043691,0.0006184768,0.00014273428,0.00008425119,0.00014229017],"domain_scores_gemma":[0.99829185,0.000023881255,0.0010453343,0.00033908756,0.0002593179,0.000040499937],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003181148,0.000123071,0.00032984177,0.000091302434,0.000028769304,0.000004181038,0.00039192682,0.00036996845,0.00007502315],"category_scores_gemma":[0.00017278596,0.00008574961,0.00014668048,0.00011882553,0.0002534803,0.00000551531,0.00015447641,0.00013213682,0.0000010395286],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012311673,0.00006528763,0.026762115,0.0000070207784,0.00010393441,0.0000020889306,0.000106215724,3.240866e-7,0.9713161,0.000021971815,0.00001356321,0.00037022392],"study_design_scores_gemma":[0.00030732897,0.00071362295,0.31866455,0.000023434175,0.000027726679,0.000023564078,0.000028663888,0.0000010638369,0.6787248,0.000041416664,0.001386155,0.000057631994],"about_ca_topic_score_codex":0.000009358007,"about_ca_topic_score_gemma":0.0000096524645,"teacher_disagreement_score":0.29259124,"about_ca_system_score_codex":0.000010638332,"about_ca_system_score_gemma":0.00011817079,"threshold_uncertainty_score":0.34967676},"labels":[],"label_agreement":null},{"id":"W2050207946","doi":"10.1371/journal.pone.0009225","title":"Visualizing Interactions along the Escherichia coli Twin-Arginine Translocation Pathway Using Protein Fragment Complementation","year":2010,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Division of Chemical, Bioengineering, Environmental, and Transport Systems; Canadian Institutes of Health Research; New York State Foundation for Science, Technology and Innovation; National Science Foundation","keywords":"Bimolecular fluorescence complementation; Twin-arginine translocation pathway; Translocase; Complementation; Biology; Chaperone (clinical); Cell biology; Transmembrane domain; Protein-fragment complementation assay; Cytoplasm; Protein–protein interaction; Transport protein; Transmembrane protein; Biochemistry; Yellow fluorescent protein; Escherichia coli; Membrane protein; Biophysics; Chromosomal translocation; Membrane transport protein; Membrane; Mutant; Gene","score_opus":0.0388897198727938,"score_gpt":0.2767683404872689,"score_spread":0.2378786206144751,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050207946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99656373,0.00006082626,0.0017660437,0.0008279247,0.00013396321,0.0005404288,0.00001852125,0.000020142246,0.00006843438],"genre_scores_gemma":[0.9894564,0.000027207785,0.009690815,0.0001575746,0.00035555713,0.000077555575,0.0001491115,0.000019363457,0.00006640763],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992239,0.000047185848,0.00021918611,0.00022189069,0.000116784744,0.00017104985],"domain_scores_gemma":[0.9994984,0.0000061866635,0.000105550185,0.0002636159,0.00009058467,0.000035612953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014793484,0.00011566035,0.00010507148,0.000031865093,0.00016533413,0.00004072801,0.0001475846,0.00011896208,0.000077023906],"category_scores_gemma":[0.000028628525,0.00009748206,0.000038042002,0.00009381164,0.00007137435,0.0000048874185,0.00005725594,0.00018636718,0.0000064767632],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028797747,0.00038790237,0.00024346772,0.000014299731,0.0000889824,2.891775e-7,0.00006868021,0.0000042881306,0.99766546,0.00023356326,0.000012243491,0.001252016],"study_design_scores_gemma":[0.0003668899,0.00015283724,0.00088810123,0.000031505966,0.000036760193,0.0000016014402,0.000101087244,0.00066511356,0.994293,0.000036046313,0.0033013881,0.00012569314],"about_ca_topic_score_codex":0.00008334982,"about_ca_topic_score_gemma":0.0005406313,"teacher_disagreement_score":0.007924771,"about_ca_system_score_codex":0.00001159373,"about_ca_system_score_gemma":0.0000498568,"threshold_uncertainty_score":0.39752027},"labels":[],"label_agreement":null},{"id":"W2050499128","doi":"10.1128/jb.185.10.3139-3146.2003","title":"Transcription Regulation Coupling of the Divergent<i>argG</i>and<i>metY</i>Promoters in<i>Escherichia coli</i>K-12","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Institut national de la recherche scientifique","keywords":"Biology; Promoter; Escherichia coli; Escherichia coli Proteins; Transcription (linguistics); Genetics; Transcription factor; Cell biology; Gene; Gene expression","score_opus":0.009392262160294877,"score_gpt":0.2100160271758629,"score_spread":0.20062376501556803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050499128","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99798954,0.0005391366,0.00034169148,0.00025328842,0.00071207085,0.000110616405,0.000004908519,0.000001684009,0.00004707233],"genre_scores_gemma":[0.99834883,0.0007014731,0.0006724522,0.0001453302,0.00008173695,0.0000017282312,0.000004273349,0.000010734647,0.0000334305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904376,0.000092199036,0.00047578602,0.00015096203,0.00007229879,0.00016502061],"domain_scores_gemma":[0.9992981,0.000010342536,0.00038704218,0.00017628394,0.00008899628,0.00003921155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039339825,0.00011827877,0.00025002335,0.0000664831,0.00003651548,0.000007523836,0.00016901524,0.00028843348,0.000014915239],"category_scores_gemma":[0.000080869315,0.00008739906,0.00010919174,0.00009646696,0.00016763425,0.0000060786783,0.000043537457,0.0001683297,3.0666047e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013595367,0.00004529441,0.008888167,0.000013132458,0.00003607228,0.0000010003504,0.00005068501,0.000084713814,0.9902243,0.00015709379,0.000035947767,0.0003276614],"study_design_scores_gemma":[0.0010613973,0.0006812646,0.13214739,0.00003297788,0.000039363298,0.00009443735,0.00005168945,0.000036725392,0.85016775,0.00036730868,0.015194156,0.0001255121],"about_ca_topic_score_codex":0.000008257427,"about_ca_topic_score_gemma":0.000028621014,"teacher_disagreement_score":0.1400565,"about_ca_system_score_codex":0.000013783608,"about_ca_system_score_gemma":0.00007034089,"threshold_uncertainty_score":0.356403},"labels":[],"label_agreement":null},{"id":"W2050730005","doi":"10.1016/j.jmb.2014.09.018","title":"Mechanistic Basis of Plasmid-Specific DNA Binding of the F Plasmid Regulatory Protein, TraM","year":2014,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Canadian HIV Trials Network, Canadian Institutes of Health Research","keywords":"Biology; Plasmid; Genetics; DNA; Base pair; Binding site; Conserved sequence; Peptide sequence; DNA-binding domain; DNA binding site; Gene; Transcription factor; Promoter","score_opus":0.00596701209496756,"score_gpt":0.21129512373839154,"score_spread":0.205328111643424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050730005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99379253,0.00047721618,0.0045618666,0.00036333353,0.00047606914,0.00016971116,0.000025256988,0.0000032227936,0.00013078106],"genre_scores_gemma":[0.9970946,0.000121322824,0.0024819402,0.00008580368,0.00014633534,0.000003481696,0.000008879293,0.00002255422,0.000035139918],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842894,0.00023743829,0.0006917174,0.00023472049,0.00015934039,0.0002478492],"domain_scores_gemma":[0.99829876,0.000021715905,0.0008908216,0.0004832985,0.00024091383,0.00006447818],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005289622,0.00018957049,0.00041763854,0.00013484791,0.000045426692,0.000006454317,0.0006109167,0.0005050607,0.000022069218],"category_scores_gemma":[0.00022361895,0.00013409906,0.0003089974,0.00015781779,0.0003548685,0.0000022931843,0.00019156211,0.00021065127,0.000001121323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015710472,0.000074978256,0.0001885045,0.000025849899,0.000117653726,0.000002062018,0.000008672693,0.000019238709,0.9936202,0.0034175655,0.00015398198,0.0022141957],"study_design_scores_gemma":[0.0006716041,0.0013910503,0.0004157226,0.00005135914,0.000042506694,0.00008225454,0.000018709205,0.000010542661,0.982322,0.0014020993,0.013457805,0.00013439672],"about_ca_topic_score_codex":0.0000022287577,"about_ca_topic_score_gemma":0.0000032761745,"teacher_disagreement_score":0.013303823,"about_ca_system_score_codex":0.000015038319,"about_ca_system_score_gemma":0.00010951464,"threshold_uncertainty_score":0.54684013},"labels":[],"label_agreement":null},{"id":"W2050761990","doi":"10.1039/c2mb25040c","title":"Genome-scale genetic manipulation methods for exploring bacterial molecular biology","year":2012,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genome; Gene; Computational biology; Bacteria; Bacterial genome size; Genetics; Escherichia coli; Microbial genetics","score_opus":0.07591542757599361,"score_gpt":0.35833537106992536,"score_spread":0.28241994349393174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050761990","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034865788,0.8840026,0.106892146,0.000015110682,0.0027207672,0.0024935405,0.00025325696,0.00006768857,0.00006830211],"genre_scores_gemma":[0.002309527,0.93243706,0.056058418,0.000041884734,0.0021308884,0.0019073011,0.0046384293,0.0003857498,0.000090723144],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9953664,0.0007853879,0.0012585747,0.0013927255,0.00013881137,0.0010580814],"domain_scores_gemma":[0.99737316,0.000032528846,0.00071047863,0.0014664205,0.00016281758,0.00025460953],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0006932736,0.0010134716,0.0018429415,0.0003338557,0.00013723515,0.000102266225,0.0008945767,0.0021679727,0.000030343503],"category_scores_gemma":[0.00007106411,0.000950208,0.0011193712,0.00030486623,0.00013558337,0.0000061807764,0.00053006684,0.00029003998,0.00003978252],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001902845,0.00004270034,0.0000016133329,0.0024213179,0.00034124716,0.0000032923272,0.0000063700713,0.0000015915766,0.67527723,0.00011974499,0.000007414145,0.32175842],"study_design_scores_gemma":[0.00037226352,0.00039899332,0.0000031748268,0.00038094583,0.0009336707,0.00011471982,0.0000060999178,0.000006353903,0.08650156,0.000057048142,0.91023815,0.000987039],"about_ca_topic_score_codex":0.00001515611,"about_ca_topic_score_gemma":0.000005899706,"teacher_disagreement_score":0.9102307,"about_ca_system_score_codex":0.000092210175,"about_ca_system_score_gemma":0.00019416353,"threshold_uncertainty_score":0.9992948},"labels":[],"label_agreement":null},{"id":"W2050797847","doi":"10.1089/mdr.2012.0006","title":"Calcium-Dependent Complex Formation Between PBP2 and Lytic Transglycosylase SltB1 of <i>Pseudomonas aeruginosa</i>","year":2012,"lang":"en","type":"article","venue":"Microbial Drug Resistance","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Response Biomedical (Canada)","funders":"Fondation pour la Recherche Médicale","keywords":"Periplasmic space; Biochemistry; Bacterial cell structure; Peptidoglycan; Penicillin binding proteins; Biosynthesis; Cell wall; Pseudomonas aeruginosa; Lipid II; Lytic cycle; Enzyme; Biology; Glycosyltransferase; Chemistry; Bacteria; Escherichia coli; Gene","score_opus":0.014626575545193548,"score_gpt":0.233789499789123,"score_spread":0.21916292424392944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050797847","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99607164,0.001334523,0.0013204484,0.0004087901,0.00011403979,0.0002277871,0.0002086001,0.000014352056,0.00029983668],"genre_scores_gemma":[0.9972695,0.000247007,0.001377508,0.00010604832,0.00026339653,0.0000065966296,0.00019369283,0.00001957591,0.00051663414],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989364,0.000058240585,0.00032628782,0.00023976417,0.00009304036,0.00034624207],"domain_scores_gemma":[0.99941695,0.000011669509,0.00013456018,0.0002814275,0.000057873112,0.0000975438],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019298316,0.00017729744,0.00023391374,0.00004684453,0.00007624723,0.000016536913,0.00018437227,0.00020831553,0.000012921436],"category_scores_gemma":[0.000013638141,0.0001754679,0.000069926085,0.00007847313,0.00017297156,0.0000091162865,0.00009689752,0.000097085234,0.000005994074],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117341384,0.000047435795,0.0007062061,0.00008881462,0.000025317635,6.071901e-7,0.000097179116,6.339446e-7,0.9959065,0.000096940435,0.0022299264,0.0006831305],"study_design_scores_gemma":[0.0006496448,0.00004464139,0.0031542399,0.000022168262,0.000034826167,0.0000087665785,0.000030446388,0.0000015436759,0.93716234,0.000026521067,0.058667753,0.00019708755],"about_ca_topic_score_codex":0.000022333179,"about_ca_topic_score_gemma":0.00014767708,"teacher_disagreement_score":0.058744106,"about_ca_system_score_codex":0.000017307299,"about_ca_system_score_gemma":0.00002623883,"threshold_uncertainty_score":0.7155373},"labels":[],"label_agreement":null},{"id":"W2050970529","doi":"10.1016/j.molcel.2009.06.029","title":"Insights into the Bacterial Transferrin Receptor: The Structure of Transferrin-Binding Protein B from Actinobacillus pleuropneumoniae","year":2009,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Toronto; University of British Columbia","funders":"Howard Hughes Medical Institute","keywords":"Actinobacillus pleuropneumoniae; Biology; Transferrin; Transferrin receptor; Microbiology; Bacterial protein; Receptor; Biochemistry; Gene; Serotype","score_opus":0.004474927347413543,"score_gpt":0.18849977359312708,"score_spread":0.18402484624571355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050970529","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968691,0.0005531422,0.0004184093,0.0009618666,0.00027446318,0.0005378433,0.00006754009,0.000017986618,0.00029968852],"genre_scores_gemma":[0.99874777,0.00013435082,0.00039192737,0.00019737291,0.00019837166,0.000007214623,0.00019541636,0.000031645766,0.00009590968],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985189,0.00019058595,0.00033720525,0.0004669438,0.00019649144,0.00028986],"domain_scores_gemma":[0.999036,0.000009407571,0.00009623755,0.0007391186,0.00005727799,0.000061924344],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006448733,0.0002942641,0.00023432431,0.000039895767,0.00014960476,0.000046300258,0.0007180106,0.0004054114,0.0000676133],"category_scores_gemma":[0.000018319544,0.00018460362,0.00018256911,0.0001561957,0.00018485678,0.000003765537,0.00007714153,0.0002892732,0.0000062448153],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001615318,0.0000491489,0.000007712273,0.000007914273,0.000044433295,0.0000044106337,0.00026957423,0.000013380083,0.99484885,0.00017670915,0.00004321067,0.0043730983],"study_design_scores_gemma":[0.0005600396,0.00054003275,0.00016093173,0.000011552761,0.00003897209,0.0000023114153,0.00007355482,0.0000067729666,0.9587582,0.0003328072,0.039288152,0.00022668633],"about_ca_topic_score_codex":0.00007133174,"about_ca_topic_score_gemma":0.000094321585,"teacher_disagreement_score":0.039244942,"about_ca_system_score_codex":0.000013732044,"about_ca_system_score_gemma":0.00006851821,"threshold_uncertainty_score":0.7527917},"labels":[],"label_agreement":null},{"id":"W2051033712","doi":"10.1371/journal.pone.0050562","title":"Genome Context as a Predictive Tool for Identifying Regulatory Targets of the TetR Family Transcriptional Regulators","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"TetR; Biology; Genetics; Repressor; Gene; Context (archaeology); Protein family; Gene family; Transcriptional regulation; Computational biology; Genome; Gene expression","score_opus":0.027442442801852387,"score_gpt":0.22315048168049095,"score_spread":0.19570803887863858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051033712","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959265,0.0026552903,0.00030806064,0.00015623032,0.00019944855,0.00050309807,0.00014628228,0.000011211506,0.00009386384],"genre_scores_gemma":[0.9978922,0.00009330719,0.0009137307,0.0001571905,0.0003448684,0.00006264662,0.000063501706,0.000022212063,0.00045036545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911153,0.000033785556,0.00022668025,0.0002080202,0.00016524589,0.00025475567],"domain_scores_gemma":[0.9993749,0.000008545409,0.00011220554,0.0003320379,0.0001250015,0.000047312144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016721044,0.00012452807,0.00017286239,0.000031948566,0.000080406084,0.000008106587,0.00022099374,0.00025565783,0.00001685447],"category_scores_gemma":[0.00006739725,0.00010148494,0.00012826793,0.000062511994,0.00016419,0.000005222038,0.000085413325,0.000075282376,0.0000032256123],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015580562,0.00031867626,0.0019059719,0.000050262064,0.00026106744,5.2588653e-8,0.00006455076,0.0000012239294,0.9963324,0.0006840964,0.00005352524,0.00017236368],"study_design_scores_gemma":[0.0004324925,0.00028145305,0.10794222,0.000028614773,0.00009763028,0.0000019648817,0.00006583252,0.00000625357,0.88668126,0.00023307833,0.004105958,0.00012321273],"about_ca_topic_score_codex":0.000004217049,"about_ca_topic_score_gemma":0.0000031496609,"teacher_disagreement_score":0.10965112,"about_ca_system_score_codex":0.000016910153,"about_ca_system_score_gemma":0.000056999103,"threshold_uncertainty_score":0.41384357},"labels":[],"label_agreement":null},{"id":"W2051108682","doi":"10.1016/j.jbiotec.2005.08.004","title":"In vitro expression of the restriction endonucleases LlaMI and ScrFI isolated from Lactococcus lactis M19 and UC503","year":2005,"lang":"en","type":"article","venue":"Journal of Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lactococcus lactis; Restriction enzyme; Molecular biology; Biology; Southern blot; Histidine; Endonuclease; Cytosine; Biochemistry; Enzyme; Amino acid; Gene; Genetics; Bacteria; Lactic acid","score_opus":0.004413413632185802,"score_gpt":0.2071611978655591,"score_spread":0.20274778423337328,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051108682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99388397,0.0020927172,0.00008054023,0.0036472792,0.00015717561,0.00009930992,0.000021457901,0.0000052554665,0.000012312111],"genre_scores_gemma":[0.9946454,0.004155813,0.00093908235,0.00010963379,0.0001229225,0.0000013102269,0.0000028966317,0.0000098120145,0.000013117885],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99921095,0.000054208536,0.00034907946,0.00017484273,0.00006821041,0.00014271519],"domain_scores_gemma":[0.99933946,0.00002007918,0.00034655406,0.0002211509,0.00004105428,0.00003169608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000098701385,0.00011345823,0.0002163247,0.00014920566,0.00003601027,0.000009478842,0.00019288395,0.0006610558,0.000007189656],"category_scores_gemma":[0.000120081335,0.000080728874,0.00004836168,0.00013653713,0.00021761589,0.0000082217275,0.00020797236,0.00027773692,3.358595e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027271418,0.000052586904,0.00073891116,0.0000037698906,0.000019090736,0.00000366189,0.000013542252,0.0000025737193,0.98541516,0.000019103063,0.00017988867,0.013279026],"study_design_scores_gemma":[0.00082015514,0.0004056119,0.0059866062,0.000032574793,0.000018201878,0.00010590143,0.000051169976,0.000021298332,0.980253,0.0001892398,0.012036502,0.00007978103],"about_ca_topic_score_codex":0.00004161457,"about_ca_topic_score_gemma":0.000050295013,"teacher_disagreement_score":0.013199246,"about_ca_system_score_codex":0.000013549348,"about_ca_system_score_gemma":0.00003301069,"threshold_uncertainty_score":0.5098668},"labels":[],"label_agreement":null},{"id":"W2051906628","doi":"10.1016/s0966-842x(01)01981-3","title":"Lessons and questions from the structure of the Spo0A activation domain","year":2001,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Bacillus subtilis; Regulator; Domain (mathematical analysis); Computational biology; Cell biology; Genetics; Gene; Bacteria","score_opus":0.00793131782827664,"score_gpt":0.24361394573142212,"score_spread":0.23568262790314548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051906628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99507684,0.00027562983,0.000034525077,0.0042285933,0.00013337319,0.00005219203,0.00014263569,0.0000032104406,0.000053008338],"genre_scores_gemma":[0.9989994,0.00017479791,0.00026691967,0.00023023944,0.0000834552,0.0000015331713,0.0001625648,0.000005977897,0.00007508664],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994556,0.00008197606,0.00013189351,0.00019118593,0.000013958548,0.00012542645],"domain_scores_gemma":[0.9995974,0.000016182883,0.00007093543,0.0002885797,0.000017013674,0.000009917798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004942626,0.00008732065,0.00009831036,0.000030590818,0.00005150392,0.0000052050245,0.0002073491,0.0002780648,0.00003692914],"category_scores_gemma":[0.000020824662,0.000050946925,0.00003206705,0.00012222589,0.00026959626,0.0000010772235,0.00014692305,0.000118781776,3.5912745e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003145547,0.000013164865,0.0076732817,6.080575e-7,0.00001507942,1.9083095e-7,0.00003469904,0.0000043468112,0.98618525,0.00030877162,0.00029937582,0.0054337573],"study_design_scores_gemma":[0.00037732648,0.000074080766,0.14707766,0.000009275971,0.000009697491,0.000032692347,0.000053704574,0.0000012633129,0.7973804,0.0012530931,0.053643804,0.00008699377],"about_ca_topic_score_codex":0.00014250205,"about_ca_topic_score_gemma":0.0017416603,"teacher_disagreement_score":0.18880486,"about_ca_system_score_codex":0.000006104154,"about_ca_system_score_gemma":0.000015410782,"threshold_uncertainty_score":0.21446905},"labels":[],"label_agreement":null},{"id":"W2052018677","doi":"10.1016/j.jmb.2010.05.062","title":"A Comprehensive Analysis of Structural and Sequence Conservation in the TetR Family Transcriptional Regulators","year":2010,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; Canada Research Chairs","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Allosteric regulation; TetR; Repressor; Biology; Computational biology; Genetics; Binding site; DNA; Conserved sequence; Operator (biology); Transcription factor; Gene","score_opus":0.012833136485207869,"score_gpt":0.2710590684152036,"score_spread":0.25822593192999577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052018677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99783033,0.00074319285,0.00050734944,0.0006701515,0.0001483746,0.000064288855,0.000023384651,8.7450536e-7,0.000012058841],"genre_scores_gemma":[0.9976656,0.000117269374,0.0016800249,0.00045385904,0.00004148924,0.0000011389154,0.000035041656,0.000004130938,0.0000014548211],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99923193,0.000113129325,0.0003366075,0.00013298276,0.00007491252,0.00011042674],"domain_scores_gemma":[0.99938536,0.000020423484,0.00023165379,0.00016311106,0.00017383508,0.000025624493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021856466,0.00009235959,0.00022964965,0.0001911661,0.000021291808,0.0000075939397,0.00021077042,0.00024857727,0.000004370021],"category_scores_gemma":[0.000053846692,0.00006340164,0.000117220145,0.00025050418,0.00030328255,0.0000025470688,0.0000307038,0.00019516019,6.217304e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071950875,0.000013942898,0.012666125,0.0000039649526,0.00020469251,0.000005373003,0.00003271602,0.00002668952,0.9841659,0.0019431355,0.00000916696,0.0008563094],"study_design_scores_gemma":[0.0008812945,0.00092701067,0.5641596,0.000006808483,0.00029031056,0.000253425,0.00017649689,0.0002118063,0.4249974,0.0019726888,0.005956913,0.00016625616],"about_ca_topic_score_codex":0.00002802437,"about_ca_topic_score_gemma":0.00007010658,"teacher_disagreement_score":0.5591685,"about_ca_system_score_codex":0.0000033087554,"about_ca_system_score_gemma":0.000054660937,"threshold_uncertainty_score":0.2585444},"labels":[],"label_agreement":null},{"id":"W2052056310","doi":"10.1074/jbc.m610838200","title":"Glyoxylate and Pyruvate Are Antagonistic Effectors of the Escherichia coli IclR Transcriptional Regulator","year":2007,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Structural Genomics Consortium; Maple Leaf Medical Clinic","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; University of Toronto","keywords":"Glyoxylate cycle; Effector; Operon; Biochemistry; Chemistry; Escherichia coli; Electrophoretic mobility shift assay; Regulator; Biology; Transcription factor; Metabolism; Gene","score_opus":0.00902382002434472,"score_gpt":0.21892201283733603,"score_spread":0.20989819281299132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052056310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983021,0.0009770747,0.00013428216,0.00023290566,0.00018560368,0.0000613162,0.000022578291,0.0000033632377,0.00008075241],"genre_scores_gemma":[0.99886906,0.00023918228,0.00043958347,0.000086793836,0.0002856482,6.777285e-7,0.0000059050853,0.000007482086,0.00006564451],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991007,0.000032037336,0.0004030321,0.00016489181,0.000111407615,0.00018792613],"domain_scores_gemma":[0.99920547,0.00002395676,0.00040436344,0.00016380387,0.00011643786,0.00008595471],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037111298,0.00013981861,0.00023909594,0.000013856414,0.00005303008,0.000009834966,0.000252596,0.00042710698,0.000020808555],"category_scores_gemma":[0.00015259931,0.000082935236,0.00015633383,0.000085744614,0.00038629156,0.0000018497913,0.00009063543,0.00021515034,2.0492857e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030122846,0.00005757932,0.009706014,0.00003073504,0.0000513265,0.000005274611,0.0000054096304,0.000003466484,0.9893375,0.00001827365,0.000034459932,0.00044871512],"study_design_scores_gemma":[0.00044360352,0.00026317142,0.10187922,0.000026588124,0.000022591315,0.00007507529,0.000023977125,0.0000031682116,0.89296216,0.00010348028,0.0040999553,0.00009699168],"about_ca_topic_score_codex":0.0000012837064,"about_ca_topic_score_gemma":0.000001185768,"teacher_disagreement_score":0.09637534,"about_ca_system_score_codex":0.000014356812,"about_ca_system_score_gemma":0.000055262415,"threshold_uncertainty_score":0.33820006},"labels":[],"label_agreement":null},{"id":"W2052174532","doi":"10.1002/pro.135","title":"Rate and extent of protein localization is controlled by peptide‐binding domain association kinetics and morphology","year":2009,"lang":"en","type":"article","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Heart and Stroke Foundation of Canada","keywords":"Kinetics; Biophysics; Fusion protein; Chromosomal translocation; Receptor–ligand kinetics; Cell biology; Transport protein; Protein domain; Cytoskeleton; Biology; Nuclear localization sequence; Calmodulin; Chemistry; Biochemistry; Cell; Recombinant DNA; Receptor; Gene; Nucleus; Enzyme; Physics","score_opus":0.004773661641930233,"score_gpt":0.22453222695098146,"score_spread":0.21975856530905122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052174532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99530005,0.00045759592,0.0023675766,0.0011036278,0.000028400513,0.0006482387,0.000012238568,0.0000067327987,0.00007552474],"genre_scores_gemma":[0.9972938,0.000120333396,0.002088857,0.00016862463,0.000023654884,0.000023807615,0.000008256493,0.0000048000034,0.00026791682],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902046,0.000054094766,0.00022052023,0.00034803708,0.00013476571,0.00022213487],"domain_scores_gemma":[0.9994423,0.0000050761855,0.00021376048,0.00015653847,0.00012813942,0.000054196844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064908265,0.00010522482,0.00017385108,0.000060050446,0.000091009104,0.000039345716,0.00013595508,0.00017912283,0.0000045827396],"category_scores_gemma":[0.00023077462,0.00009272772,0.00002029237,0.0001665018,0.00028303827,0.0000064837777,0.000089080204,0.000055097735,6.5952804e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009154299,0.00003277556,0.000264613,0.000006151315,0.000005593587,3.2514825e-7,0.000024002164,0.0000012404714,0.9972288,0.00019909359,0.00004679465,0.0020990414],"study_design_scores_gemma":[0.0011282917,0.00089539436,0.00092525396,0.0000145502445,0.0000068424442,0.0000037298796,0.00001912062,0.00014462581,0.99445415,0.0008199117,0.0014779103,0.000110239416],"about_ca_topic_score_codex":0.000006595379,"about_ca_topic_score_gemma":0.0000024056258,"teacher_disagreement_score":0.0027746968,"about_ca_system_score_codex":0.000019760815,"about_ca_system_score_gemma":0.000037880047,"threshold_uncertainty_score":0.37813267},"labels":[],"label_agreement":null},{"id":"W2053248846","doi":"10.1074/jbc.m502347200","title":"Identification of the VirB4-VirB8-VirB5-VirB2 Pilus Assembly Sequence of Type IV Secretion Systems","year":2005,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; European Commission; McMaster University","keywords":"Pilus; Secretion; Biology; Bacterial outer membrane; Agrobacterium tumefaciens; Cell biology; Virulence; Pilin; Type three secretion system; Biochemistry; Gene; Escherichia coli","score_opus":0.019362123509077366,"score_gpt":0.25455176241542554,"score_spread":0.23518963890634817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053248846","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979107,0.0011189659,0.00018276693,0.00025862418,0.0002641248,0.0000798296,0.000029759887,0.0000036176098,0.0001516144],"genre_scores_gemma":[0.99856555,0.00071314955,0.00013884527,0.00003027783,0.00040093908,0.0000015761432,0.000015958592,0.000007295545,0.00012642985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987177,0.00007083361,0.0007265111,0.00017612908,0.00016244444,0.00014637952],"domain_scores_gemma":[0.9982974,0.00001704428,0.0009707464,0.00031724214,0.00034873706,0.000048839953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000434633,0.00012942353,0.00025748968,0.00001968238,0.000034861176,0.000012221069,0.00048131263,0.0004890077,0.000016351036],"category_scores_gemma":[0.00028635157,0.0000815819,0.00016050029,0.00013623352,0.00023920853,0.000005049231,0.0001244735,0.00019709762,0.0000015673686],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012446615,0.00007807964,0.00081083033,0.000036841186,0.0000423049,7.8937063e-7,0.0000059862077,0.00012611072,0.9978566,0.000033752036,0.000115687435,0.0007685582],"study_design_scores_gemma":[0.00024913225,0.00030653126,0.0019142746,0.000036961133,0.000025514033,0.000103284954,0.0000364633,0.00019853082,0.9902718,0.000047198682,0.0067144735,0.000095815085],"about_ca_topic_score_codex":0.0000032208625,"about_ca_topic_score_gemma":6.430039e-7,"teacher_disagreement_score":0.0075847735,"about_ca_system_score_codex":0.000025189367,"about_ca_system_score_gemma":0.000082360595,"threshold_uncertainty_score":0.3771675},"labels":[],"label_agreement":null},{"id":"W2053522089","doi":"10.1021/bi049496d","title":"Substrate Binding Affinity of <i>Pseudomonas aeruginosa </i>Membrane-Bound Lytic Transglycosylase B by Hydrogen−Deuterium Exchange MALDI MS","year":2004,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Peptidoglycan; Chemistry; Dipeptide; Hydrogen–deuterium exchange; Stereochemistry; Bacterial cell structure; Biochemistry; Enzyme; Amino acid; Mass spectrometry; Bacteria; Chromatography; Biology","score_opus":0.008574455465730555,"score_gpt":0.21445047061524192,"score_spread":0.20587601514951137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053522089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99674284,0.0013629801,0.00011703124,0.00031103072,0.00019842964,0.00020479887,0.00050911494,0.00004425432,0.0005095399],"genre_scores_gemma":[0.9973588,0.00072171993,0.00036830868,0.00011557496,0.00027244844,0.000025700605,0.0007216306,0.0000502921,0.00036550307],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980858,0.000027586157,0.00045337266,0.0006838997,0.0001975413,0.0005517767],"domain_scores_gemma":[0.9988204,0.0000080474565,0.00021212548,0.000682994,0.00008335724,0.00019307167],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001697264,0.0003929654,0.00034808202,0.000050978913,0.000096635915,0.000036055528,0.0004952906,0.0007713597,0.000067369736],"category_scores_gemma":[0.000027762877,0.00041078686,0.00021546116,0.00019766501,0.00035830567,0.000005813501,0.00014856111,0.00019876052,0.00001648109],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001399443,0.0002012376,0.00014026598,0.00019341137,0.00008212952,0.000014441531,0.000018767556,0.000010274794,0.9986021,0.00001454487,0.00037812543,0.00020474293],"study_design_scores_gemma":[0.0014176044,0.00026297805,0.00009619965,0.000040795432,0.000049684066,0.000084060026,0.000035487334,0.0000023089237,0.9932059,0.000028173432,0.004324902,0.0004518817],"about_ca_topic_score_codex":0.000057825968,"about_ca_topic_score_gemma":0.000019365947,"teacher_disagreement_score":0.0053961887,"about_ca_system_score_codex":0.000041494844,"about_ca_system_score_gemma":0.00019340291,"threshold_uncertainty_score":0.9998344},"labels":[],"label_agreement":null},{"id":"W2054385111","doi":"10.1002/em.1035","title":"Just how does the <i>cII</i> selection system work in Muta™Mouse?","year":2001,"lang":"en","type":"review","venue":"Environmental and Molecular Mutagenesis","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"York University","keywords":"Selection (genetic algorithm); Biology; Genetics; Computer science; Artificial intelligence","score_opus":0.007783551351457205,"score_gpt":0.20914816581018433,"score_spread":0.20136461445872714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054385111","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.05661571,0.9420352,0.00009231557,0.000096547185,0.00026056985,0.00074487476,0.00007667762,0.000023174514,0.000054948676],"genre_scores_gemma":[0.05293741,0.9452422,0.00011104205,0.00008537518,0.00021840175,0.00017305645,0.00034600554,0.000086677865,0.0007998085],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99811834,0.00022615012,0.00033961647,0.0007671417,0.00014900841,0.00039972636],"domain_scores_gemma":[0.9992326,0.000008866971,0.00019861323,0.00047288527,0.0000042320826,0.00008280409],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001590882,0.0005170999,0.0006473713,0.00009576498,0.0001567845,0.000093043265,0.00033409218,0.00081106566,0.000013709404],"category_scores_gemma":[0.0000066423663,0.00033014748,0.00028373077,0.00018750837,0.0002509722,0.0000029256717,0.0003608004,0.00025274605,0.000019076595],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050008468,0.0001446783,0.00015403089,0.0016962235,0.0003814785,0.000106381565,0.000025840507,0.0000040631194,0.22814445,0.00003500077,0.00032747845,0.7689304],"study_design_scores_gemma":[0.0002060121,0.00010846927,0.00005090254,0.0002956151,0.00030549982,0.00019697989,0.00010188537,0.0000012306598,0.020755894,0.0000011630447,0.97751194,0.00046438916],"about_ca_topic_score_codex":0.000013982086,"about_ca_topic_score_gemma":0.000022267546,"teacher_disagreement_score":0.9771845,"about_ca_system_score_codex":0.00008535346,"about_ca_system_score_gemma":0.00003839308,"threshold_uncertainty_score":0.99991506},"labels":[],"label_agreement":null},{"id":"W2054512592","doi":"10.1128/jb.00969-07","title":"O-Linked Glycosylation Ensures the Normal Conformation of the Autotransporter Adhesin Involved in Diffuse Adherence","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Biotechnology Research Institute; Université de Montréal","funders":"","keywords":"Glycosylation; Bacterial adhesin; Biology; Escherichia coli; Threonine; Serine; Proteases; Biochemistry; Gene; Enzyme","score_opus":0.011158507492494597,"score_gpt":0.2319020444879682,"score_spread":0.2207435369954736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054512592","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982305,0.00018633227,0.00035369454,0.00038204773,0.0006686292,0.00011755178,0.0000060523817,0.0000017448347,0.00005344221],"genre_scores_gemma":[0.9992516,0.00020247012,0.00018333503,0.00016525776,0.00015642816,0.0000011623127,0.000011021468,0.0000061920196,0.000022506776],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989115,0.00009076918,0.0006494274,0.00008798214,0.00008779691,0.00017253697],"domain_scores_gemma":[0.99901414,0.000028305896,0.00058032456,0.00020982971,0.0001409665,0.000026411617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006348859,0.00009999761,0.00018862047,0.0000694284,0.000035121266,0.000005670918,0.00032296014,0.000296483,0.00001372701],"category_scores_gemma":[0.0000791547,0.000056676614,0.00010665508,0.00010208341,0.00019541477,0.0000074092836,0.000054156655,0.00021558932,7.676058e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039355978,0.00005444413,0.023698261,0.000007785548,0.000024946585,0.0000018258352,0.00010594088,0.000017253502,0.9727544,0.00005120237,0.0000433812,0.0028469996],"study_design_scores_gemma":[0.00093763456,0.0005292726,0.6377743,0.000018955414,0.000015379293,0.000052027903,0.00006469843,0.000024236073,0.35486075,0.00008151638,0.0055744797,0.00006679],"about_ca_topic_score_codex":0.00002786577,"about_ca_topic_score_gemma":0.00042710055,"teacher_disagreement_score":0.61789364,"about_ca_system_score_codex":0.000012941413,"about_ca_system_score_gemma":0.00008512781,"threshold_uncertainty_score":0.23112053},"labels":[],"label_agreement":null},{"id":"W2054623339","doi":"10.1016/s0022-2836(02)01134-8","title":"Regulation of the Escherichia coli Allantoin Regulon: Coordinated Function of the Repressor AllR and the Activator AllS","year":2002,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Generalitat de Catalunya; Institute for Catastrophic Loss Reduction","keywords":"Regulon; Operon; Repressor; Promoter; Genetics; Biology; Gene; Activator (genetics); Mutant; Molecular biology; Gene expression","score_opus":0.005860904276928471,"score_gpt":0.20439316276764632,"score_spread":0.19853225849071784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054623339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935527,0.0018063464,0.0005088269,0.0034260626,0.00036136617,0.00020495508,0.000007644433,0.0000017615718,0.00013034328],"genre_scores_gemma":[0.99886763,0.00042642394,0.00019437808,0.0002736671,0.000087415414,0.0000022484357,0.000002768672,0.000010669205,0.00013482088],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998779,0.000393933,0.00043521274,0.00015668623,0.00010176266,0.00013341618],"domain_scores_gemma":[0.99848956,0.00002698825,0.0008089209,0.0004434918,0.00020537237,0.00002565706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003971535,0.00012172018,0.0002553952,0.000030826654,0.000058358204,0.0000073045417,0.00038439775,0.00032689134,0.000018588327],"category_scores_gemma":[0.00024931194,0.000059040485,0.00018869223,0.00014375869,0.0005942701,0.0000027197136,0.0002128861,0.00018133214,2.5621517e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003944713,0.000039231294,0.00052859995,0.000008334964,0.0001703739,3.7747012e-7,0.000022487524,0.000027217558,0.99630535,0.0008194248,0.0004991339,0.0011849994],"study_design_scores_gemma":[0.0013382582,0.0004679913,0.015509281,0.000022798627,0.00009363017,0.00005502303,0.000022476122,0.000060936556,0.97086763,0.00090693764,0.010580881,0.00007412601],"about_ca_topic_score_codex":0.000012130253,"about_ca_topic_score_gemma":0.0000074457125,"teacher_disagreement_score":0.025437687,"about_ca_system_score_codex":0.000007399197,"about_ca_system_score_gemma":0.000034802713,"threshold_uncertainty_score":0.25212854},"labels":[],"label_agreement":null},{"id":"W2054874599","doi":"10.1016/j.febslet.2012.03.031","title":"FolX from <i>Pseudomonas aeruginosa</i> is octameric in both crystal and solution","year":2012,"lang":"en","type":"article","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Scotland; Directorate for Biological Sciences; Wellcome Trust; European Synchrotron Radiation Facility; Diamond Light Source","keywords":"Pseudomonas aeruginosa; Crystal (programming language); Crystallography; Chemistry; Scattering; Pseudomonas; Microbiology; Physics; Biology; Bacteria; Optics; Computer science; Genetics","score_opus":0.006564969425426312,"score_gpt":0.20485931416657038,"score_spread":0.19829434474114407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054874599","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99493015,0.0010271216,0.00048837246,0.0030322967,0.00028341726,0.00009732285,0.000035102257,0.000011885782,0.00009435118],"genre_scores_gemma":[0.9932276,0.00024385798,0.0012075781,0.004782845,0.00039188119,0.0000094358675,0.00008455198,0.000015321664,0.000036920184],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991843,0.000032029944,0.00013861292,0.000256343,0.00006188648,0.0003268367],"domain_scores_gemma":[0.9996618,0.0000053488625,0.000050421826,0.00021082252,0.0000073524648,0.00006426066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007216082,0.00013426892,0.00012232599,0.000042596672,0.00003621408,0.000017309243,0.00010255114,0.00019603476,0.00002069018],"category_scores_gemma":[0.000009715072,0.00013325467,0.00003919851,0.000065912114,0.00010543922,0.00000519578,0.00012446036,0.00009378522,0.0000092535365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031277945,0.0000289455,0.017848507,0.0000033573524,0.000016317394,0.0000014797799,0.000059599264,6.793576e-7,0.97581077,0.000011537201,0.004183742,0.0020037978],"study_design_scores_gemma":[0.0009733548,0.00015414838,0.10481992,0.000014034373,0.00002446804,0.000022254464,0.000049589275,0.000029083194,0.7282047,0.000040434916,0.16524751,0.00042045108],"about_ca_topic_score_codex":0.00020776023,"about_ca_topic_score_gemma":0.000043856635,"teacher_disagreement_score":0.24760602,"about_ca_system_score_codex":0.000011909102,"about_ca_system_score_gemma":0.000010384752,"threshold_uncertainty_score":0.5433968},"labels":[],"label_agreement":null},{"id":"W2055599162","doi":"10.1016/j.febslet.2005.02.056","title":"Targeting protein homodimerization: A novel drug discovery system","year":2005,"lang":"en","type":"article","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute for Catastrophic Loss Reduction","keywords":"Enterococcus faecalis; Staphylococcus aureus; Microbiology; Vancomycin; Two-component regulatory system; Chemistry; Drug discovery; Methicillin-resistant Staphylococcus aureus; Antibiotics; Bacteria; Biology; Gene; Biochemistry; Genetics","score_opus":0.0043678355324930345,"score_gpt":0.1872289155858302,"score_spread":0.18286108005333718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055599162","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98055494,0.00019516438,0.013530606,0.0050187004,0.00022314067,0.0002589731,0.00002722156,0.000047715057,0.00014356994],"genre_scores_gemma":[0.9916767,0.00001156983,0.005450184,0.0011986394,0.0010270949,0.00003903295,0.00014740216,0.000026821206,0.00042255194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990842,0.00002461543,0.00019970557,0.00034019188,0.00009058062,0.00026070958],"domain_scores_gemma":[0.99956363,0.0000021630694,0.00008779657,0.0002796684,0.000025403368,0.000041356747],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000093892384,0.00015303111,0.00012113674,0.000038448088,0.00008654524,0.0000599579,0.00020770883,0.00013730889,0.0000060589114],"category_scores_gemma":[0.000016296213,0.0001441403,0.00006234502,0.0000830671,0.000067763336,0.0000068988643,0.00012273491,0.000088370456,0.000021457294],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024808935,0.00002673701,0.00008672552,0.000020212132,0.000023763694,0.0000016087617,0.00001680819,0.00021926124,0.9969361,0.00022288266,0.0019442347,0.0004768522],"study_design_scores_gemma":[0.00041489894,0.000049393235,0.00019349674,0.000025658506,0.000010718646,0.00001563514,0.000054318985,0.00021948689,0.9018997,0.0000011214653,0.09686573,0.00024984338],"about_ca_topic_score_codex":0.00001277899,"about_ca_topic_score_gemma":0.00000805319,"teacher_disagreement_score":0.09503641,"about_ca_system_score_codex":0.000023014542,"about_ca_system_score_gemma":0.000024893789,"threshold_uncertainty_score":0.5877871},"labels":[],"label_agreement":null},{"id":"W2056387527","doi":"10.1074/jbc.m600434200","title":"Evidence for Assembly of Small Multidrug Resistance Proteins by a “Two-faced” Transmembrane Helix","year":2006,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Halobacterium salinarum; Antiporters; Transmembrane protein; Transmembrane domain; Biology; Efflux; Membrane protein; Circular dichroism; Helix (gastropod); Protein structure; Mutant; Biochemistry; Biophysics; Amino acid; Antiporter; Membrane; Bacteriorhodopsin","score_opus":0.027839052216236046,"score_gpt":0.2639095084769299,"score_spread":0.23607045626069384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056387527","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9894944,0.0054189456,0.0040675336,0.0005208124,0.00006755767,0.00020887253,0.00009249125,0.000006824557,0.00012258659],"genre_scores_gemma":[0.98882496,0.00081007864,0.009361834,0.000048066686,0.0003965887,0.000014629783,0.00004515891,0.000013469867,0.0004852069],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986743,0.000038648748,0.00062838534,0.00028116634,0.00011240197,0.0002651081],"domain_scores_gemma":[0.9988705,0.00005569671,0.0005144539,0.00022526582,0.00026085624,0.000073220326],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035880896,0.00019338641,0.0003587794,0.000017966526,0.000041171945,0.000014458042,0.00041811483,0.00047636862,0.000015218381],"category_scores_gemma":[0.00028511457,0.00014286186,0.00026131448,0.00007787589,0.00019058696,0.0000036989088,0.000054287575,0.00017638666,3.788107e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008464323,0.00016868298,0.00018414919,0.00010794558,0.00003875913,0.0000035039689,0.0000029991672,0.00001529453,0.9971176,0.000008619933,0.0008492589,0.0006567849],"study_design_scores_gemma":[0.0011074457,0.000578169,0.00029268232,0.00010634135,0.00002524123,0.000034244902,0.000013740654,0.000009569083,0.9828154,0.00013549882,0.0147052985,0.00017637796],"about_ca_topic_score_codex":0.00000756833,"about_ca_topic_score_gemma":0.0000109888215,"teacher_disagreement_score":0.014302179,"about_ca_system_score_codex":0.000016959713,"about_ca_system_score_gemma":0.000081200305,"threshold_uncertainty_score":0.5825737},"labels":[],"label_agreement":null},{"id":"W2056790008","doi":"10.1074/jbc.m201978200","title":"The Bacterial Histone-like Protein HU Specifically Recognizes Similar Structures in All Nucleic Acids","year":2002,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Federation of European Biochemical Societies","keywords":"RNA; DNA; Biology; Nucleoid; Non-coding RNA; Cell biology; Biochemistry; Molecular biology; Gene; Escherichia coli","score_opus":0.026207728228949945,"score_gpt":0.2456106611690106,"score_spread":0.21940293294006064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056790008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959994,0.0015668144,0.00001249002,0.0014679087,0.0003399223,0.00011752485,0.000014220015,0.000008210714,0.00047350884],"genre_scores_gemma":[0.9954634,0.001995287,0.0010477538,0.0001533693,0.00095907314,0.0000056490903,0.000018988774,0.000015974609,0.00034054104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984737,0.00008379701,0.00062945834,0.00029823236,0.00014738114,0.00036741435],"domain_scores_gemma":[0.9990843,0.000026827927,0.0003573039,0.00030477555,0.00011192801,0.00011489727],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003190649,0.00023000536,0.00030155334,0.000024050938,0.000078841505,0.000052996264,0.00062790554,0.0007147633,0.0003517752],"category_scores_gemma":[0.00031351976,0.00013912556,0.00019045016,0.0000878546,0.00033096175,0.0000040573113,0.00017248033,0.00044677153,0.000005316622],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037132215,0.00008989618,0.00017575307,0.000008003576,0.000043641572,0.00002859109,0.0000080603795,0.0000016004452,0.99332035,0.000012286384,0.0016034662,0.004337008],"study_design_scores_gemma":[0.00064551906,0.000483829,0.001311058,0.000013422507,0.000008977654,0.0001350264,0.000029882496,0.0000040577925,0.7625373,0.00036319924,0.23428431,0.0001833993],"about_ca_topic_score_codex":0.0000013930545,"about_ca_topic_score_gemma":0.000003956722,"teacher_disagreement_score":0.23268084,"about_ca_system_score_codex":0.000037719878,"about_ca_system_score_gemma":0.000032518463,"threshold_uncertainty_score":0.56733763},"labels":[],"label_agreement":null},{"id":"W2057045668","doi":"10.1074/jbc.m112.436303","title":"Harmonic Analysis of the Fluorescence Response of Bimane Adducts of Colicin E1 at Helices 6, 7, and 10","year":2012,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Fluorescence; Helix (gastropod); Colicin; Chemistry; Fluorescence anisotropy; Crystallography; Fluorophore; Fluorescence in the life sciences; Membrane; Biology; Biochemistry; Physics; DNA","score_opus":0.01635026364693876,"score_gpt":0.24824336604203365,"score_spread":0.2318931023950949,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057045668","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971825,0.0025202557,0.0000034397935,0.0001319707,0.00004239972,0.000037609087,0.000048644844,0.0000010288342,0.000032141852],"genre_scores_gemma":[0.9986013,0.0009437,0.00025055016,0.000020946156,0.00007407869,6.4668814e-7,0.0000070764822,0.000003829435,0.00009782978],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990539,0.00008451245,0.00047535202,0.00011921649,0.000110594345,0.00015640653],"domain_scores_gemma":[0.998751,0.000050856186,0.00071161403,0.00024584215,0.00017417264,0.00006654245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048635644,0.0001083035,0.0003710338,0.000039914008,0.0000224327,0.000002436363,0.00030050677,0.00032850722,0.00008675828],"category_scores_gemma":[0.0003521159,0.000063295505,0.00020650552,0.00021570703,0.000441775,0.000002296428,0.00026195534,0.000102810955,2.0092543e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010640315,0.00009988866,0.018845405,0.00003012724,0.00026333617,4.904366e-7,0.000016745395,0.000002984083,0.9793401,0.000002034965,0.000087439934,0.0002474313],"study_design_scores_gemma":[0.00023177208,0.00033014492,0.10602517,0.000017099439,0.00016269168,0.000028020815,0.000035205027,0.0000036607864,0.89180464,0.0000046348077,0.0012952186,0.00006176321],"about_ca_topic_score_codex":0.000003636757,"about_ca_topic_score_gemma":0.0000011881423,"teacher_disagreement_score":0.08753546,"about_ca_system_score_codex":0.000010280946,"about_ca_system_score_gemma":0.000041595125,"threshold_uncertainty_score":0.25811157},"labels":[],"label_agreement":null},{"id":"W2058022913","doi":"10.1042/bj3520539","title":"Interaction of sigma factor σN with Escherichia coli RNA polymerase core enzyme","year":2000,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Directorate for Biological Sciences; Institute of Genetics; Wellcome Trust","keywords":"RNA polymerase; Chemistry; Sigma factor; Biophysics; Kinetics; Tryptophan; Specificity factor; Dissociation constant; Gel electrophoresis; Biochemistry; Polymerase; Fluorescence; Stereochemistry; DNA; Absorbance; Escherichia coli; Chromatography; Biology; Amino acid","score_opus":0.010126046816144216,"score_gpt":0.2367981899987641,"score_spread":0.22667214318261988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058022913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984777,0.00056372664,0.00015371159,0.00020487519,0.00013871727,0.000076391894,0.0000291671,0.000009354474,0.00034633494],"genre_scores_gemma":[0.99754256,0.00046028325,0.0010448634,0.00017020272,0.00044607144,0.0000028091251,0.000036476966,0.00002103291,0.00027567477],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990797,0.000025758189,0.00028613803,0.00023089426,0.00013466083,0.00024286438],"domain_scores_gemma":[0.9993919,0.0000066522366,0.00015290904,0.0002193021,0.000089095294,0.00014010601],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053317133,0.00017159428,0.00018377692,0.00003965024,0.000054815097,0.00002645294,0.00022174075,0.00031155677,0.0005488648],"category_scores_gemma":[0.000023575074,0.00013277674,0.000097443415,0.00009881018,0.00015268108,0.0000041173316,0.000045105222,0.00025138308,0.000007226051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006487729,0.00010710624,0.00025072703,0.0000066626835,0.00007029908,0.0000067670076,0.0000123594655,0.000004381524,0.988292,0.000005508226,0.0010402857,0.009555124],"study_design_scores_gemma":[0.00066644885,0.00072746706,0.00076201063,0.000025978003,0.000021535065,0.0001756752,0.00002129457,0.000016604314,0.9793757,0.000015076002,0.01801601,0.00017618583],"about_ca_topic_score_codex":0.000009371376,"about_ca_topic_score_gemma":0.0000025390807,"teacher_disagreement_score":0.016975725,"about_ca_system_score_codex":0.00001565191,"about_ca_system_score_gemma":0.00008253417,"threshold_uncertainty_score":0.6009684},"labels":[],"label_agreement":null},{"id":"W2059027572","doi":"10.1016/j.bbamcr.2004.03.008","title":"Protein secretion through autotransporter and two-partner pathways","year":2004,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Molecular Cell Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":171,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Bacterial outer membrane; Periplasmic space; Secretion; Membrane protein; Secretory protein; Transport protein; Membrane transport protein; Inner membrane; Biology; Cell biology; Secretory pathway; Biochemistry; Porin; Translocon; Membrane; Escherichia coli; Gene; Endoplasmic reticulum","score_opus":0.05538149827190216,"score_gpt":0.35085509855542385,"score_spread":0.2954736002835217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059027572","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17668584,0.8170011,0.00021226877,0.00041837283,0.00019539714,0.0033514171,0.00036006418,0.00009135508,0.0016841805],"genre_scores_gemma":[0.10328354,0.89186704,0.0011246616,0.00010032973,0.00036787053,0.00043469085,0.0021462734,0.00025551295,0.00042009537],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99445736,0.00077733677,0.0008185125,0.0019832116,0.0007259683,0.0012376338],"domain_scores_gemma":[0.9974469,0.000030676834,0.00035594677,0.0016161118,0.00026346423,0.00028688204],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00071288145,0.0009819963,0.0012685228,0.00031417966,0.00025999846,0.00023804286,0.0010734516,0.0017619866,0.000027058175],"category_scores_gemma":[0.000047009868,0.0008569014,0.00067322294,0.00066612224,0.00087054167,0.000013135416,0.0008832355,0.0014498057,0.00007490877],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006036901,0.00025210087,2.5869426e-8,0.0037980773,0.00020660754,0.000056516146,0.00004647031,6.363922e-7,0.9754379,0.00079833146,0.00012139089,0.019221568],"study_design_scores_gemma":[0.00055310683,0.0007429336,0.0000012268279,0.001440931,0.0001812742,0.000025215446,0.000011678802,0.0000027870362,0.62214124,0.00049834227,0.37364036,0.000760888],"about_ca_topic_score_codex":0.00006458574,"about_ca_topic_score_gemma":0.00000928709,"teacher_disagreement_score":0.37351897,"about_ca_system_score_codex":0.000100152756,"about_ca_system_score_gemma":0.0011331073,"threshold_uncertainty_score":0.99953395},"labels":[],"label_agreement":null},{"id":"W2059229442","doi":"10.1016/j.bpj.2011.11.2711","title":"Investigation of the Signal Sensing Mechanism by the Bacterial Thermosensor Desk using Molecular Dynamics Methods","year":2012,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Desk; Transmembrane protein; Biophysics; Mutant; Molecular dynamics; Membrane; Helix (gastropod); Chemistry; Bilayer; Crystallography; Biological system; Materials science; Biology; Biochemistry; Engineering; Ecology; Mechanical engineering; Computational chemistry; Gene","score_opus":0.017074999167871814,"score_gpt":0.2646294677983203,"score_spread":0.2475544686304485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059229442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9576844,0.00006453454,0.04119897,0.00035192483,0.0005646315,0.00009948532,0.00001632857,0.0000037862644,0.000015948943],"genre_scores_gemma":[0.9876828,0.000013811848,0.011408153,0.0001623842,0.0006882969,6.0814955e-7,0.000010475748,0.000020590755,0.000012858233],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988299,0.00038550454,0.0002389582,0.0001323757,0.00014430238,0.00026893057],"domain_scores_gemma":[0.99933386,0.00001672181,0.00024000336,0.00024541948,0.00008412905,0.00007984084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037436982,0.00014469662,0.00014279461,0.00001742446,0.00016851959,0.0000371146,0.0002642692,0.00022186124,0.000007588558],"category_scores_gemma":[0.000040118222,0.00008365008,0.0001583713,0.00010898416,0.00024244361,0.0000063142124,0.00017017698,0.00022269452,7.418809e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029510657,0.00001661489,0.00002967316,0.0000026676091,0.000051254472,3.3472185e-7,0.00003259344,0.0000053331805,0.99543405,0.0005100926,0.000022172248,0.0038657119],"study_design_scores_gemma":[0.0001760521,0.00009297119,0.00018786825,0.0000092031105,0.00005803032,0.00012822732,0.000047283887,0.0012446856,0.9969956,0.0006028893,0.00034402008,0.00011316137],"about_ca_topic_score_codex":0.000008496351,"about_ca_topic_score_gemma":9.180332e-7,"teacher_disagreement_score":0.029998431,"about_ca_system_score_codex":0.000032458283,"about_ca_system_score_gemma":0.0000773209,"threshold_uncertainty_score":0.34111512},"labels":[],"label_agreement":null},{"id":"W2059430496","doi":"10.1074/jbc.m114.603175","title":"SbnG, a Citrate Synthase in Staphylococcus aureus","year":2014,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of British Columbia","funders":"Biological and Environmental Research; National Research Council Canada; National Center for Research Resources; National Institute of General Medical Sciences; Western Economic Diversification Canada; Canadian Light Source; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Office of Science; National Institutes of Health; University of Saskatchewan; U.S. Department of Energy","keywords":"Citrate synthase; Siderophore; Biochemistry; ATP citrate lyase; Biology; Active site; Citric acid cycle; Phosphoenolpyruvate carboxykinase; Enzyme; Gene","score_opus":0.011337359265367896,"score_gpt":0.23390844273160566,"score_spread":0.22257108346623777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059430496","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979125,0.000628857,0.0002474892,0.0002704649,0.000115992465,0.000044205437,0.000007897944,0.000005749668,0.0007668456],"genre_scores_gemma":[0.99812317,0.0003923356,0.0006613349,0.00018261604,0.0005536232,0.000002536514,0.000012942441,0.000008891962,0.000062578925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989392,0.000058249912,0.0004328668,0.00022268144,0.00008951122,0.00025745906],"domain_scores_gemma":[0.99930483,0.000019678773,0.0002569783,0.00021885887,0.00009053419,0.00010911844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004048391,0.00015908168,0.00027280112,0.000032650692,0.000023758214,0.000017501667,0.00035115358,0.0005315367,0.00006235256],"category_scores_gemma":[0.0003452493,0.00011464475,0.0001400716,0.000093869334,0.00013909872,0.0000020058974,0.00010603009,0.00028031677,0.000003086172],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016668133,0.00010530506,0.003095257,0.000011362464,0.000021288053,0.000016376373,0.0000033099882,0.000013597631,0.994002,0.000017767807,0.00026526675,0.002281799],"study_design_scores_gemma":[0.0006817755,0.00061377865,0.0034975235,0.000019871844,0.0000071205213,0.000060866685,0.000023154002,0.00001568015,0.9545905,0.00031349293,0.040010598,0.00016566597],"about_ca_topic_score_codex":0.0000019115284,"about_ca_topic_score_gemma":0.0000022488357,"teacher_disagreement_score":0.03974533,"about_ca_system_score_codex":0.0000148288045,"about_ca_system_score_gemma":0.000050819734,"threshold_uncertainty_score":0.46750772},"labels":[],"label_agreement":null},{"id":"W2059436752","doi":"10.1128/jb.01296-10","title":"Structure of the Periplasmic Stress Response Protein CpxP","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Lawrence Berkeley National Laboratory; Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research; Canadian Light Source; Fondation pour la Recherche Médicale; Howard Hughes Medical Institute","keywords":"Periplasmic space; Biology; Protein structure; Signal transducing adaptor protein; Antiparallel (mathematics); Protein folding; Biochemistry; Mutant; Proteolysis; Cell biology; Signal transduction; Escherichia coli; Gene; Enzyme","score_opus":0.008387078659767866,"score_gpt":0.20950560072678753,"score_spread":0.20111852206701966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059436752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99893826,0.00016040936,0.00003106249,0.0002021108,0.00046601705,0.0001108156,0.0000444192,0.0000019385636,0.00004494811],"genre_scores_gemma":[0.9986031,0.00003913858,0.0010217121,0.000067880195,0.00016007446,9.993474e-7,0.0000031797824,0.000012838309,0.000091087706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989734,0.00023540758,0.00041489644,0.00013553943,0.00007076327,0.00016995598],"domain_scores_gemma":[0.99890906,0.000008206301,0.0005390742,0.00033494376,0.00016504996,0.00004366733],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018488216,0.00012596046,0.00024085082,0.000061343,0.000035706944,0.0000048723177,0.0004981163,0.00036532024,0.00009118889],"category_scores_gemma":[0.00015005254,0.00007878016,0.00014370837,0.000070698334,0.00027296296,0.0000029164098,0.00017684445,0.00020937779,8.0572033e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017679967,0.000041808886,0.0030936173,0.000009413707,0.00006626867,0.0000039791285,0.00007089018,0.0000024294443,0.99433434,0.000049726048,0.000064377775,0.0004951323],"study_design_scores_gemma":[0.00039199184,0.001378833,0.084809214,0.000022081922,0.000018589326,0.00024080474,0.000047688078,7.735903e-7,0.90750015,0.00017856123,0.005329833,0.00008150249],"about_ca_topic_score_codex":0.0000072966186,"about_ca_topic_score_gemma":0.00002008338,"teacher_disagreement_score":0.08683423,"about_ca_system_score_codex":0.00000946626,"about_ca_system_score_gemma":0.00015404244,"threshold_uncertainty_score":0.32125616},"labels":[],"label_agreement":null},{"id":"W2059448438","doi":"10.1016/s0378-1119(00)00285-7","title":"Identification and characterization of the gltK gene encoding a membrane-associated glucose transport protein of Pseudomonas aeruginosa","year":2000,"lang":"en","type":"article","venue":"Gene","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Open reading frame; ATP-binding cassette transporter; Gene; Mutant; Gene product; ORFS; Homology (biology); Genetics; Bacterial outer membrane; Molecular biology; Peptide sequence; Gene expression; Transporter; Escherichia coli","score_opus":0.005448052766377593,"score_gpt":0.193446107608281,"score_spread":0.1879980548419034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059448438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991544,0.00013112398,0.00007546841,0.00014620581,0.000058465426,0.00029332924,0.0001009471,0.000006694101,0.00003336394],"genre_scores_gemma":[0.9987146,0.0006083532,0.0001176956,0.000023895325,0.000040477884,0.000014630255,0.0001884591,0.00001081207,0.00028106367],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926597,0.000040651597,0.00028128695,0.00020585276,0.00008756178,0.000118707],"domain_scores_gemma":[0.99947983,0.000001608286,0.00016912405,0.0002633118,0.00006365171,0.000022450342],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013367338,0.00009574424,0.00013393599,0.000025446876,0.000044837834,0.000005182661,0.00014818147,0.00020188368,0.000024002104],"category_scores_gemma":[0.000012123022,0.000079745,0.00005469943,0.00012132724,0.00010062476,0.0000028569273,0.00002891512,0.00004433721,7.6454756e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051722276,0.000052135492,0.0005995439,0.000017978604,0.000029441531,2.907075e-7,0.000039110542,0.0000037753393,0.9951352,0.0000133472695,0.0000011867588,0.0040562944],"study_design_scores_gemma":[0.0003130818,0.000080408216,0.0340971,0.000013906633,0.000024113535,0.000005265767,0.000004206548,0.000020033183,0.9648127,0.000019803772,0.00052815414,0.000081232385],"about_ca_topic_score_codex":0.000018545772,"about_ca_topic_score_gemma":0.000016490734,"teacher_disagreement_score":0.033497557,"about_ca_system_score_codex":0.0000052356604,"about_ca_system_score_gemma":0.00003417634,"threshold_uncertainty_score":0.32519066},"labels":[],"label_agreement":null},{"id":"W2059570089","doi":"10.1016/j.jmb.2007.01.030","title":"Identification and Characterization of a Novel Periplasmic Polygalacturonic Acid Binding Protein from Yersinia enterolitica","year":2007,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Periplasmic space; Yersinia enterocolitica; Biochemistry; Peptide sequence; Structural similarity; Biology; Yersinia; Binding site; Escherichia coli; Gene; Chemistry; Bacteria; Genetics","score_opus":0.005905109177141901,"score_gpt":0.23740670418900908,"score_spread":0.23150159501186718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059570089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9681517,0.00028467164,0.030926699,0.00023380284,0.00021906297,0.00011468574,0.00005729863,0.0000027941437,0.000009325314],"genre_scores_gemma":[0.99784786,0.000104457235,0.0017396581,0.000061031482,0.00012313893,0.000001336772,0.00009285225,0.00001387318,0.000015813708],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900126,0.000046516103,0.0004955668,0.00019317176,0.00007178037,0.00019172448],"domain_scores_gemma":[0.99912405,0.0000061601236,0.000499616,0.00017237334,0.00013399385,0.00006378451],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031342395,0.00012205946,0.00020802346,0.00014260622,0.000027599397,0.000012569927,0.00016995516,0.00031839852,0.0000052013893],"category_scores_gemma":[0.00007178663,0.00011021941,0.000079477875,0.00006927454,0.00014358903,0.0000047699236,0.00008072806,0.00012110776,7.4285475e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021097207,0.00006570148,0.0006016382,0.000008402823,0.00007713813,0.0000033531758,0.000017910437,2.243104e-7,0.9970202,0.00014075152,0.0000016065705,0.0018520926],"study_design_scores_gemma":[0.0007071555,0.00063362997,0.005366951,0.000022328031,0.00003221634,0.00007242679,0.000023875311,0.00000687585,0.9919175,0.00007806092,0.0010417905,0.00009722727],"about_ca_topic_score_codex":0.0000045159472,"about_ca_topic_score_gemma":0.0000035137255,"teacher_disagreement_score":0.02969618,"about_ca_system_score_codex":0.0000147521005,"about_ca_system_score_gemma":0.000054536096,"threshold_uncertainty_score":0.4494617},"labels":[],"label_agreement":null},{"id":"W2059968827","doi":"10.1016/j.febslet.2011.01.041","title":"IQGAP1 in microbial pathogenesis: Targeting the actin cytoskeleton","year":2011,"lang":"en","type":"review","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"IQGAP1; Cytoskeleton; Actin cytoskeleton; Biology; Cell biology; Actin; Innate immune system; Scaffold protein; Virulence; Immune system; Signal transduction; Cell; Immunology; Genetics; Gene","score_opus":0.019032072324243227,"score_gpt":0.2500441270780702,"score_spread":0.231012054753827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059968827","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010889382,0.9871504,0.000027790686,0.00041045813,0.00076497445,0.0005871104,0.0000587862,0.000020133597,0.00009100449],"genre_scores_gemma":[0.0005271206,0.9966177,0.00032399266,0.0008930665,0.00097329245,0.000095446216,0.0003878205,0.00008329074,0.00009832062],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980122,0.00024267237,0.00052296865,0.00064898655,0.00007171897,0.0005014752],"domain_scores_gemma":[0.99896294,0.000016233791,0.00030838366,0.0006454708,0.000019972085,0.00004699965],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00031494477,0.00045218694,0.0006803241,0.00011176689,0.000081024686,0.00003950127,0.000782255,0.00084404653,0.000027097021],"category_scores_gemma":[0.000050753195,0.00031750937,0.0003887548,0.00019149098,0.00013855484,0.0000017031351,0.00037761696,0.00042967772,0.00005134711],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024238785,0.000043747947,0.000011082736,0.0009398943,0.00012469628,0.000020754183,0.00002540281,7.2515866e-7,0.4632129,0.000014667024,0.008873931,0.52670795],"study_design_scores_gemma":[0.00013704246,0.00006028716,0.000011626729,0.0004397231,0.00010950695,0.000039196173,0.000007645484,1.5112995e-7,0.006515774,0.000002405285,0.9922874,0.00038922278],"about_ca_topic_score_codex":0.000047895024,"about_ca_topic_score_gemma":0.000051960425,"teacher_disagreement_score":0.9834135,"about_ca_system_score_codex":0.000033691103,"about_ca_system_score_gemma":0.00010827452,"threshold_uncertainty_score":0.9999277},"labels":[],"label_agreement":null},{"id":"W2060494559","doi":"10.1016/s0969-2126(01)00631-1","title":"Active Transport of an Antibiotic Rifamycin Derivative by the Outer-Membrane Protein FhuA","year":2001,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":110,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Ferrichrome; Bacterial outer membrane; Rifamycin; Biophysics; Ligand (biochemistry); Transport protein; Membrane protein; Chemistry; Biochemistry; Periplasmic space; Biology; Stereochemistry; Escherichia coli; Membrane; Antibiotics","score_opus":0.004260965242327144,"score_gpt":0.21390962582953418,"score_spread":0.20964866058720705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060494559","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984892,0.00011805476,0.0001008106,0.0003441552,0.00009563925,0.0003383582,0.0002778791,0.000011080437,0.00022483757],"genre_scores_gemma":[0.99867934,0.000050251343,0.0004694549,0.0001231178,0.00013117549,0.0000037307914,0.00030600646,0.000019225885,0.00021768687],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916655,0.000046882364,0.00017202679,0.00030910585,0.00009353286,0.00021188341],"domain_scores_gemma":[0.99937665,0.0000026957448,0.00010767182,0.00040489718,0.00006381232,0.00004429811],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000046463247,0.00017128623,0.00016795608,0.000023190885,0.00006309634,0.000008080472,0.0003101468,0.00034834587,0.00004823976],"category_scores_gemma":[0.000013124781,0.00011604464,0.000058362883,0.00011740338,0.0002156178,0.0000036511276,0.000042002805,0.0001524128,7.5788813e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018148532,0.000031049414,0.0002843917,0.000010827518,0.000050472398,0.0000036381055,0.00007437644,0.000004650028,0.9919045,0.000047870675,0.000058521848,0.007348198],"study_design_scores_gemma":[0.00040080474,0.00046386063,0.0074089575,0.000008055151,0.000017451079,0.000039144314,0.00010932834,0.000005028241,0.98074776,0.00017913285,0.010472283,0.00014818372],"about_ca_topic_score_codex":0.00005105864,"about_ca_topic_score_gemma":0.00014000153,"teacher_disagreement_score":0.011156747,"about_ca_system_score_codex":0.0000056279773,"about_ca_system_score_gemma":0.00003940442,"threshold_uncertainty_score":0.47321633},"labels":[],"label_agreement":null},{"id":"W2060637375","doi":"10.1159/000130822","title":"Chromosome replication patterns in an established cell line (CHO)","year":2008,"lang":"en","type":"article","venue":"Cytogenetics and Cell Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Chinese hamster ovary cell; Biology; Chinese hamster; Chromosome; Genetics; Replication (statistics); Hamster; Replication timing; Karyotype; Cricetulus; Genome; Cell culture; Molecular biology; Gene; Virology","score_opus":0.01667614690407294,"score_gpt":0.23580482164901975,"score_spread":0.21912867474494682,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060637375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957383,0.0026223261,0.0005579623,0.000077287674,0.00018060158,0.00043632655,0.000063023,0.000022899916,0.00030124353],"genre_scores_gemma":[0.9802369,0.015713913,0.002695345,0.00023173631,0.00033315085,0.000046866793,0.0003564707,0.00006451587,0.0003211402],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99790305,0.00007187419,0.00045641683,0.00092410453,0.00015877852,0.000485754],"domain_scores_gemma":[0.9983307,0.000007786812,0.00014556122,0.0011773958,0.00012228593,0.00021627641],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015916736,0.00032401603,0.0002638424,0.00012181537,0.00012500951,0.000048757254,0.0003929273,0.000536973,0.00002513624],"category_scores_gemma":[0.000015007707,0.00034301664,0.000063722466,0.00018648476,0.00017662361,0.000005143394,0.00028116538,0.00018225923,0.000007652673],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004114751,0.00024324776,0.06658598,0.000029030862,0.0000063916405,0.0000128204765,0.00007504186,0.0001686672,0.9287781,0.000008370704,0.00008063358,0.003970545],"study_design_scores_gemma":[0.0010858104,0.0010609287,0.037692387,0.000007374838,0.000019720634,0.00004866816,0.000053211363,0.0004397549,0.9422528,0.000061700644,0.016818622,0.0004590284],"about_ca_topic_score_codex":0.000020420091,"about_ca_topic_score_gemma":0.00012422736,"teacher_disagreement_score":0.028893592,"about_ca_system_score_codex":0.000016910266,"about_ca_system_score_gemma":0.00009987961,"threshold_uncertainty_score":0.9999022},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"split"},{"id":"W2060640124","doi":"10.1016/j.bbapap.2010.01.022","title":"DmsD, a Tat system specific chaperone, interacts with other general chaperones and proteins involved in the molybdenum cofactor biosynthesis","year":2010,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Translocase; Chaperone (clinical); Molybdenum cofactor; Bimolecular fluorescence complementation; Biochemistry; GroEL; Cofactor; Protein subunit; Biology; Oxidoreductase; Complementation; Escherichia coli; Biosynthesis; Protein-fragment complementation assay; Chemistry; Enzyme; Yeast; Gene; Chromosomal translocation","score_opus":0.008124096983504232,"score_gpt":0.2071173395791721,"score_spread":0.1989932425956679,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060640124","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943221,0.00017086863,0.00010260582,0.0024334115,0.000118216565,0.0026138856,0.00013762206,0.000041079315,0.000060217135],"genre_scores_gemma":[0.991814,0.0003513451,0.006391404,0.00031567173,0.0004375829,0.00051314494,0.000058632384,0.00007588265,0.00004231682],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978953,0.000163454,0.0003844525,0.0008494373,0.00019784336,0.000509492],"domain_scores_gemma":[0.99878806,0.00002073226,0.00025689063,0.0007320121,0.000073175994,0.0001291314],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00034668823,0.00050618005,0.00040636474,0.0001252048,0.00019529268,0.00023607948,0.0004860349,0.0005142296,0.000006953034],"category_scores_gemma":[0.00002962376,0.00033776916,0.00008053286,0.0002065981,0.00051992375,0.000023394394,0.00027410514,0.0005071577,0.0000039245415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045883137,0.00017154541,0.000069936425,0.00008851042,0.000059652713,0.000004724221,0.00028886565,2.5693532e-7,0.99730295,0.00075565506,0.000017563267,0.00078148296],"study_design_scores_gemma":[0.000910258,0.0010089992,0.0037877895,0.00009150748,0.000027267171,0.000064556145,0.00024639218,0.0000520928,0.9896726,0.000049369697,0.0035732856,0.0005158709],"about_ca_topic_score_codex":0.00018531228,"about_ca_topic_score_gemma":0.0004887748,"teacher_disagreement_score":0.007630364,"about_ca_system_score_codex":0.000015911692,"about_ca_system_score_gemma":0.000089225774,"threshold_uncertainty_score":0.99990743},"labels":[],"label_agreement":null},{"id":"W2060832873","doi":"10.1016/s0378-1097(03)00504-4","title":"The putative anti-anti-sigma factor BldG is post-translationally modified by phosphorylation in<i>Streptomyces coelicolor</i>","year":2003,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Streptomyces coelicolor; Phosphorylation; Serine; Biochemistry; Streptomycetaceae; Mutant; Bacillus subtilis; Streptomyces; Sigma factor; Chemistry; Biology; Actinomycetales; Gene; Genetics; Bacteria; Gene expression; Promoter","score_opus":0.005764967968748743,"score_gpt":0.21067073396181293,"score_spread":0.2049057659930642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060832873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99143845,0.0011620393,0.00057379366,0.0055039492,0.00043618513,0.00036934816,0.00042451857,0.00001949656,0.00007221887],"genre_scores_gemma":[0.99418944,0.0004244927,0.00023744353,0.004168075,0.000057485264,0.0000289799,0.00077449915,0.000026859117,0.000092695824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983451,0.00017776011,0.00037730305,0.0005702536,0.000054895278,0.00047468927],"domain_scores_gemma":[0.99931884,0.000048967304,0.00017483957,0.00032360404,0.00008727623,0.000046473167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018015617,0.00027940617,0.000244262,0.00006163887,0.00018632441,0.000042418644,0.00031542857,0.00051280775,0.000030732775],"category_scores_gemma":[0.000051927065,0.00022430712,0.000111435504,0.00013956545,0.00040242862,0.000006147597,0.000046200512,0.00022817591,0.000019440187],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058839745,0.00004737031,0.0050553274,0.0000032807775,0.00008597598,0.000002244424,0.00008952378,0.00004909495,0.9902264,0.00005937347,0.003579645,0.0007429633],"study_design_scores_gemma":[0.00074035523,0.00015868517,0.006864019,0.000004720154,0.000011878321,0.000022363898,0.000044034507,0.000008687299,0.9001396,0.000034918354,0.091689646,0.0002811324],"about_ca_topic_score_codex":0.000037052054,"about_ca_topic_score_gemma":0.00005417645,"teacher_disagreement_score":0.0900868,"about_ca_system_score_codex":0.000024687952,"about_ca_system_score_gemma":0.00007209857,"threshold_uncertainty_score":0.9146979},"labels":[],"label_agreement":null},{"id":"W2060971308","doi":"10.1074/jbc.m111.228221","title":"Functional and Structural Characterization of Polysaccharide Co-polymerase Proteins Required for Polymer Export in ATP-binding Cassette Transporter-dependent Capsule Biosynthesis Pathways","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; ATP-binding cassette transporter; Bacterial outer membrane; Biochemistry; Complementation; Biology; Cell envelope; Operon; Inner membrane; Biosynthesis; Escherichia coli; Cell biology; Mutant; Transporter; Membrane; Gene","score_opus":0.03579766845126622,"score_gpt":0.23187169725740842,"score_spread":0.1960740288061422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060971308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989689,0.00024501266,0.00024217872,0.000075373486,0.00008957338,0.00014393716,0.00021688652,0.000004408151,0.000013742663],"genre_scores_gemma":[0.999123,0.00019497622,0.00028758193,0.000035593643,0.0001893364,0.000010646877,0.00011802528,0.000011832317,0.00002902632],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885345,0.000022190738,0.00057419756,0.00024472456,0.00009567589,0.0002097892],"domain_scores_gemma":[0.9992309,0.000009710988,0.0004657213,0.00013161947,0.000079764955,0.000082243765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001995096,0.00017013778,0.0003006833,0.000050392566,0.00003820938,0.000008215526,0.00015178614,0.0004333106,0.000071210474],"category_scores_gemma":[0.000055183715,0.00013068522,0.00012238389,0.000054770153,0.00014221047,0.000008516319,0.000034215755,0.00012504765,1.8001076e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005352041,0.000073299794,0.005511183,0.000035665726,0.000052174546,0.000012205744,0.000040764993,1.0368248e-7,0.99252397,0.0000050078934,0.0000027692245,0.0012076239],"study_design_scores_gemma":[0.000682158,0.0004406364,0.02821384,0.000026660215,0.000021969814,0.00013593388,0.000056926907,0.0000028702743,0.9701969,0.000023706812,0.00004743387,0.00015098277],"about_ca_topic_score_codex":0.0000066065727,"about_ca_topic_score_gemma":0.0000013410664,"teacher_disagreement_score":0.022702657,"about_ca_system_score_codex":0.000015194778,"about_ca_system_score_gemma":0.00006558509,"threshold_uncertainty_score":0.5329189},"labels":[],"label_agreement":null},{"id":"W2061068465","doi":"10.1139/w09-049","title":"A dual mode of regulation of<i>flgM</i>by ScoC in<i>Bacillus subtilis</i>","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Operon; Bacillus subtilis; Regulator; Transcription factor; Biology; Transcription (linguistics); Cell biology; Chemistry; Genetics; Gene; Bacteria; Escherichia coli","score_opus":0.004272012571072975,"score_gpt":0.19402353799737576,"score_spread":0.18975152542630278,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061068465","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99694616,0.0018909962,0.0000722828,0.0004943842,0.00021624267,0.000069190006,0.00017665852,8.508375e-7,0.00013326743],"genre_scores_gemma":[0.9991305,0.00017938217,0.0003380763,0.00015171808,0.00007867599,3.108001e-7,0.00006298889,0.000007188071,0.00005117368],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903065,0.00006028719,0.0004957934,0.00014296669,0.00002598589,0.00024430614],"domain_scores_gemma":[0.99921197,0.0000061987666,0.00032229538,0.00017900196,0.00017027352,0.00011028147],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015989403,0.000112609414,0.00029372904,0.00019321842,0.00001831265,0.0000038323287,0.00020999688,0.00038681706,0.00002590478],"category_scores_gemma":[0.00005452528,0.00010691405,0.00009173514,0.00011682513,0.00020994633,0.0000031072761,0.000015333248,0.00012795863,6.888307e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008378572,0.0000229151,0.0008082543,0.0000057763605,0.000022993378,0.000005925212,0.00003476034,0.000051893236,0.9944739,0.0000852416,0.0018138075,0.0025907708],"study_design_scores_gemma":[0.00066411094,0.0009920258,0.0030925146,0.000026422116,0.0000135065975,0.00025930844,0.000023985009,0.000003370902,0.964496,0.00019354494,0.03012788,0.000107329244],"about_ca_topic_score_codex":0.00044809777,"about_ca_topic_score_gemma":0.0060544168,"teacher_disagreement_score":0.029977875,"about_ca_system_score_codex":0.0000257527,"about_ca_system_score_gemma":0.00048442086,"threshold_uncertainty_score":0.43598282},"labels":[],"label_agreement":null},{"id":"W2061300650","doi":"10.1016/j.str.2014.04.009","title":"A New Twist in the Assembly of Type IV Pilus-like Fibers","year":2014,"lang":"en","type":"letter","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Pilus; Pilin; Molecular machine; Biology; Secretion; Cell biology; Biophysics; Biochemistry; Genetics; Escherichia coli; Gene","score_opus":0.006665356820793487,"score_gpt":0.2228538390745361,"score_spread":0.2161884822537426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061300650","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.58578986,0.0022958708,0.00013742408,0.40412873,0.0038929924,0.0009812373,0.00033553006,0.0000317481,0.0024065988],"genre_scores_gemma":[0.6074647,0.00023669213,0.0018355777,0.3788689,0.0074392823,0.000006755803,0.001972852,0.0000964059,0.0020788196],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988623,0.00008640477,0.00023639479,0.0003867318,0.00015118837,0.00027692853],"domain_scores_gemma":[0.9990259,0.00001132131,0.00016706214,0.000719798,0.00005345386,0.000022489861],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00007340684,0.00026109078,0.00028268062,0.00006304107,0.000023716111,0.000023040993,0.0006882659,0.0018359384,0.00005176816],"category_scores_gemma":[0.000030133418,0.00018060334,0.000098783385,0.00013977695,0.000096568496,7.3065985e-7,0.000119075725,0.00075689703,0.0000037171358],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026507867,0.0000027961355,0.000029859802,0.000042286043,0.000037506365,0.000010918273,0.000027937944,0.0000024746419,0.25611976,0.000023400777,0.74250835,0.0011682011],"study_design_scores_gemma":[0.00024600944,0.00028693804,0.00028881422,0.000017814138,0.000030538456,0.000044622666,0.0000085989395,0.0000018764315,0.024016673,0.00042985502,0.97441405,0.00021420585],"about_ca_topic_score_codex":0.00008898823,"about_ca_topic_score_gemma":0.00014094947,"teacher_disagreement_score":0.2321031,"about_ca_system_score_codex":0.000008441388,"about_ca_system_score_gemma":0.0001237404,"threshold_uncertainty_score":0.99945986},"labels":[],"label_agreement":null},{"id":"W2061320085","doi":"10.1110/ps.03148703","title":"Archaeal signal peptides—A comparative survey at the genome level","year":2003,"lang":"en","type":"article","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Israel Science Foundation","keywords":"Signal peptide; Signal peptidase; Endoplasmic reticulum; Biology; Signal recognition particle; Genome; Protein Sorting Signals; Peptide sequence; Biochemistry; Bacteria; Protein targeting; Amino acid; Target peptide; Peptide; Membrane protein; Computational biology; Archaea; Whole genome sequencing; Cell biology; Membrane; Genetics; Gene","score_opus":0.0643673930290805,"score_gpt":0.28932347892850674,"score_spread":0.22495608589942623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061320085","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966802,0.0002755677,0.001101744,0.00014377564,0.00007757525,0.0003550128,0.00004547724,0.000006920467,0.00131375],"genre_scores_gemma":[0.9967891,0.000017057991,0.0015628133,0.000095937605,0.00004280867,0.000034633595,0.000017376724,0.0000062503136,0.0014340453],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998728,0.00012612088,0.0001432132,0.0004417689,0.00020122466,0.00035968935],"domain_scores_gemma":[0.9993019,0.000011198812,0.00007056918,0.00040114514,0.00014042787,0.00007476611],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011155781,0.00012267925,0.00010338934,0.000033641416,0.0003519165,0.000045062872,0.00054624357,0.00009103936,0.00005661674],"category_scores_gemma":[0.00013113818,0.000083598345,0.000034376684,0.00028964033,0.001339883,0.0000032296089,0.00031934935,0.00009633043,0.00004300057],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029520861,0.000017020915,0.00062883436,0.0000014928848,0.0000050251074,4.885925e-7,0.00003518438,0.000012729407,0.99848056,0.00039202697,0.000049080838,0.00034805588],"study_design_scores_gemma":[0.00013811735,0.00026006557,0.023254303,0.0000021226235,0.0000017203304,0.000014265197,0.00002431964,0.000010533595,0.9486896,0.00013457464,0.027335525,0.00013485696],"about_ca_topic_score_codex":0.00006138209,"about_ca_topic_score_gemma":0.00056180183,"teacher_disagreement_score":0.04979094,"about_ca_system_score_codex":0.000026780197,"about_ca_system_score_gemma":0.00021798578,"threshold_uncertainty_score":0.49368548},"labels":[],"label_agreement":null},{"id":"W2061456837","doi":"10.1128/jb.05864-11","title":"Loss of Elongation Factor P Disrupts Bacterial Outer Membrane Integrity","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Bacterial outer membrane; Elongation; Membrane integrity; Elongation factor; Membrane; Structural integrity; Cell biology; Personal Integrity; Microbiology; Biochemistry; Escherichia coli; Gene; RNA","score_opus":0.020447392762511698,"score_gpt":0.24866107756863481,"score_spread":0.2282136848061231,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061456837","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99763453,0.00007823009,0.00044676222,0.00012507655,0.0014505566,0.00008420947,0.000044894998,0.0000043076266,0.00013140417],"genre_scores_gemma":[0.9964088,0.00030716727,0.0025692773,0.000059053942,0.0005613571,0.0000016541491,0.000033750013,0.000017097313,0.00004180983],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986867,0.0001339636,0.00068123796,0.0001940412,0.00008455052,0.0002195576],"domain_scores_gemma":[0.99867105,0.000012830356,0.0006765304,0.00027215865,0.0002841946,0.000083249535],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023840125,0.00017518192,0.0004139502,0.00011403975,0.000025785173,0.000008466177,0.00035571711,0.0005339591,0.0002853025],"category_scores_gemma":[0.00012277633,0.00013745746,0.00018849797,0.00006405111,0.00024113547,0.000009762776,0.00013074955,0.00024767063,0.000004822998],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008860637,0.000115410156,0.006611608,0.000016896289,0.000118949516,0.000014640422,0.00010737701,2.4588198e-7,0.9893973,0.000074615404,0.000065178196,0.0025917513],"study_design_scores_gemma":[0.0008066861,0.002026396,0.08537876,0.000018063327,0.000033203567,0.00037994588,0.000029355497,0.0000012983305,0.9035444,0.00015269309,0.007476538,0.00015262782],"about_ca_topic_score_codex":0.000019662115,"about_ca_topic_score_gemma":0.000022047385,"teacher_disagreement_score":0.08585283,"about_ca_system_score_codex":0.000013372883,"about_ca_system_score_gemma":0.00010801451,"threshold_uncertainty_score":0.5605353},"labels":[],"label_agreement":null},{"id":"W2061669393","doi":"10.1110/ps.051342505","title":"Deletion of the proline‐rich region of TonB disrupts formation of a 2:1 complex with FhuA, an outer membrane receptor of <i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Periplasmic space; Bacterial outer membrane; Biology; Chemiosmosis; Biophysics; Escherichia coli; Siderophore; Inner membrane; Biochemistry; Crystallography; Membrane; Chemistry; ATP synthase","score_opus":0.013995374838030603,"score_gpt":0.2388776398068132,"score_spread":0.2248822649687826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061669393","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974772,0.000031055122,0.00140375,0.00044938116,0.000023081097,0.000472095,0.000016748769,0.000002881474,0.00012382682],"genre_scores_gemma":[0.9904281,0.000018836688,0.00943088,0.000027902146,0.00002607834,0.000015041434,0.000011600689,0.0000048887437,0.000036660913],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991154,0.000037797974,0.0003074138,0.00017609636,0.00023805293,0.00012520271],"domain_scores_gemma":[0.9988048,0.0000022199958,0.00040897742,0.0003521314,0.00040695825,0.00002493258],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003310341,0.000077816134,0.00014237089,0.00004199432,0.000036349753,0.0000047085387,0.00037188007,0.00009108649,0.0000040175582],"category_scores_gemma":[0.000055149572,0.00005086368,0.000032407865,0.00032580525,0.00062260556,0.000014606739,0.000102365564,0.000043468153,1.7813888e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015975596,0.00008676543,0.0001759665,0.00005610525,0.0000035719104,3.025968e-8,0.000095786956,0.000044074008,0.99669075,0.0001642936,0.000009955772,0.002512936],"study_design_scores_gemma":[0.0002702641,0.000793777,0.0012034231,0.00003838447,0.0000061918868,0.0000042919323,0.0000374407,0.0003900184,0.995817,0.000023576938,0.0013535495,0.00006207455],"about_ca_topic_score_codex":0.000018033432,"about_ca_topic_score_gemma":0.000039558283,"teacher_disagreement_score":0.00802713,"about_ca_system_score_codex":0.0000076189353,"about_ca_system_score_gemma":0.00009864481,"threshold_uncertainty_score":0.2294016},"labels":[],"label_agreement":null},{"id":"W2061991759","doi":"10.1074/jbc.m112.376525","title":"Differential Glycosylation of Polar and Lateral Flagellins in Aeromonas hydrophila AH-3","year":2012,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"","keywords":"Flagellin; Biochemistry; Chemistry; Complementation; Glycosylation; Glycan; Mutant; Aeromonas hydrophila; Stereochemistry; Gene; Biology; Genetics; Glycoprotein; Bacteria","score_opus":0.011616113884678774,"score_gpt":0.22794407852141457,"score_spread":0.2163279646367358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061991759","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99863565,0.0010098508,0.0000500606,0.00008172815,0.00009777841,0.000033337496,0.000012685682,0.000001879,0.000077033736],"genre_scores_gemma":[0.99848276,0.0007734554,0.0002745047,0.000018563063,0.0004004106,5.9794604e-7,0.000025787123,0.0000054512607,0.000018492146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992621,0.000030582443,0.00035109895,0.00010943103,0.00006694624,0.00017987003],"domain_scores_gemma":[0.99955136,0.00000944913,0.00022181627,0.00009814021,0.000041981286,0.000077262994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013845913,0.00010838374,0.00021170684,0.00002460265,0.00001476768,0.0000060365464,0.00012330634,0.00041131474,0.00004121737],"category_scores_gemma":[0.000055781216,0.00007802401,0.000076377044,0.000042974134,0.000114854,0.0000038723842,0.000090108944,0.00016123852,4.3232257e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015436608,0.00011030727,0.038976062,0.000014040008,0.00001910818,0.0000025267282,0.000009370677,0.0000013687767,0.9600537,0.000006342129,0.0000132698115,0.00063957786],"study_design_scores_gemma":[0.00046186306,0.00028305769,0.05014586,0.000012513725,0.000008512951,0.00009229518,0.000009620127,0.000006625524,0.94723856,0.00008171804,0.0015670061,0.00009239046],"about_ca_topic_score_codex":0.0000033148888,"about_ca_topic_score_gemma":9.1543393e-7,"teacher_disagreement_score":0.012815125,"about_ca_system_score_codex":0.000008260624,"about_ca_system_score_gemma":0.000015299225,"threshold_uncertainty_score":0.31817266},"labels":[],"label_agreement":null},{"id":"W2062655682","doi":"10.1111/j.1574-6976.2001.tb00575.x","title":"The archaeal flagellum: a different kind of prokaryotic motility structure","year":2001,"lang":"en","type":"review","venue":"FEMS Microbiology Reviews","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Flagellum; Archaea; Biology; Flagellin; Euryarchaeota; Gene; Genetics; Conserved sequence; Bacteria; Microbiology; Peptide sequence","score_opus":0.02641313052775803,"score_gpt":0.28581048678117976,"score_spread":0.25939735625342175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062655682","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0036342577,0.99282724,0.00001987857,0.000043686465,0.00086312013,0.0020993792,0.00044581617,0.000011402104,0.000055223318],"genre_scores_gemma":[0.00023634586,0.99647963,0.00012854855,0.00004345075,0.0004539334,0.000104871775,0.0016473397,0.00005650226,0.0008493538],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962394,0.00081606465,0.0014044386,0.0008859664,0.000043412158,0.0006107201],"domain_scores_gemma":[0.99718904,0.000049876184,0.0010965522,0.0015063317,0.00007606751,0.00008215354],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004442957,0.0007516684,0.0024083918,0.00007690194,0.00014325912,0.0000208652,0.0012178064,0.0016716492,0.000051201474],"category_scores_gemma":[0.00015111978,0.0004048256,0.00091988663,0.00022124992,0.00078696664,0.00000114956,0.0006803222,0.0006231717,0.000029983119],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018500026,0.000058607126,0.000014751599,0.003153141,0.0002551627,0.0000020205832,0.0000075609482,4.6910248e-8,0.08860337,0.000019362995,0.0022222144,0.90564525],"study_design_scores_gemma":[0.00015085022,0.00030860407,0.000010548736,0.001153485,0.0003490017,0.00027352685,0.000002460934,1.1955935e-7,0.0022427756,0.000036571655,0.9951382,0.00033381418],"about_ca_topic_score_codex":0.0000076061287,"about_ca_topic_score_gemma":0.00013084411,"teacher_disagreement_score":0.99291605,"about_ca_system_score_codex":0.0000317202,"about_ca_system_score_gemma":0.00015938903,"threshold_uncertainty_score":0.9998404},"labels":[],"label_agreement":null},{"id":"W2063019204","doi":"10.1016/j.jmb.2010.12.020","title":"Crystal Structure of Escherichia coli BamB, a Lipoprotein Component of the β-Barrel Assembly Machinery Complex","year":2010,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Research Council Canada; Canada Foundation for Innovation; Michael Smith Health Research BC; University of Saskatchewan; Canadian Light Source","keywords":"Bama; Biology; Bacterial outer membrane; Binding site; Protein structure; Peptide sequence; Escherichia coli; Biochemistry; Gene","score_opus":0.0060080276077639945,"score_gpt":0.23550539539738097,"score_spread":0.22949736778961696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063019204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968407,0.00036995756,0.0012509318,0.0005187868,0.0006941267,0.00017337273,0.000084556246,0.0000025681709,0.00006497589],"genre_scores_gemma":[0.9937628,0.000047041765,0.0057459655,0.00018613752,0.00020083715,0.0000011394991,0.000025139934,0.000020462141,0.000010456446],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860364,0.0001796944,0.0006421585,0.00020032049,0.0001467303,0.00022743073],"domain_scores_gemma":[0.9982776,0.000013253013,0.0008656596,0.00047424767,0.0002971516,0.00007209583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022667674,0.00019784615,0.0004248282,0.00008336782,0.00004086437,0.000007498262,0.00067862653,0.0005659179,0.000035749694],"category_scores_gemma":[0.00015921843,0.00013288771,0.00029786554,0.00013426054,0.00043132497,0.0000021404082,0.0002965517,0.0004648152,3.1381177e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019446248,0.00009872297,0.0009785244,0.000021405156,0.0001626456,0.0000035718197,0.000010571856,0.000028021133,0.99685085,0.00062916474,0.00012283774,0.0008992385],"study_design_scores_gemma":[0.0007607301,0.0008940491,0.01127949,0.000014288133,0.00004871572,0.00014754829,0.000013606932,0.00002361262,0.9791383,0.00055085885,0.0069940975,0.00013467512],"about_ca_topic_score_codex":0.00004087461,"about_ca_topic_score_gemma":0.00006940734,"teacher_disagreement_score":0.017712506,"about_ca_system_score_codex":0.000006705176,"about_ca_system_score_gemma":0.00016485485,"threshold_uncertainty_score":0.54190034},"labels":[],"label_agreement":null},{"id":"W2063199570","doi":"10.1016/j.mrfmmm.2004.04.013","title":"Positive selection for loss of RpoS function in Escherichia coli","year":2004,"lang":"en","type":"article","venue":"Mutation research. Fundamental and molecular mechanisms of mutagenesis","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"rpoS; Mutant; Biology; Sigma factor; Genetics; Regulon; Operon; Escherichia coli; Gene; Mutation; Wild type; lac operon; Point mutation; Molecular biology; Gene expression; Promoter; RNA polymerase","score_opus":0.0142703684215747,"score_gpt":0.28104337916114946,"score_spread":0.26677301073957477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063199570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9413872,0.00018592722,0.057501763,0.00019903466,0.000060831506,0.00058361166,0.00005224085,0.000005232882,0.000024200484],"genre_scores_gemma":[0.99329144,0.0000932144,0.0062809368,0.00006301996,0.000018708413,0.0000824815,0.00012585097,0.000019407795,0.000024945351],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894905,0.0000822675,0.00025137566,0.00030647236,0.00018705703,0.00022380399],"domain_scores_gemma":[0.9995127,0.000013414826,0.00009763862,0.0001137605,0.00021264164,0.000049861344],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036738632,0.00011546317,0.00016043191,0.0001930993,0.00006743935,0.000013232544,0.000091246264,0.0002104832,0.0000071911754],"category_scores_gemma":[0.000052587635,0.00012116575,0.00006556776,0.00024172422,0.00014666632,0.0000058605624,0.000086638756,0.000071451366,6.3495276e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050098955,0.00017719711,0.000085811254,0.00006147974,0.000053698852,0.0000026891562,0.000044452896,0.00019279713,0.9916164,0.005389581,0.0000035571727,0.0018712888],"study_design_scores_gemma":[0.0013646707,0.0025444634,0.00200515,0.0000262796,0.000019531524,0.000007792115,0.0003076328,0.00006869189,0.98405033,0.0093937395,0.00010088627,0.00011081065],"about_ca_topic_score_codex":0.00018420088,"about_ca_topic_score_gemma":0.00010372698,"teacher_disagreement_score":0.05190428,"about_ca_system_score_codex":0.000035558463,"about_ca_system_score_gemma":0.00009442836,"threshold_uncertainty_score":0.4940996},"labels":[],"label_agreement":null},{"id":"W2063624336","doi":"10.1093/nar/gkp672","title":"H-NS binds with high affinity to the Tn10 transpososome and promotes transpososome stabilization","year":2009,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Tn10; Biology; Transposase; Transposable element; DNA; Binding site; Biophysics; DNA-binding protein; Plasma protein binding; Transposition (logic); Molecular biology; Cell biology; Gene; Biochemistry; Mutant; Transcription factor","score_opus":0.020161113678610305,"score_gpt":0.28099732231444413,"score_spread":0.26083620863583384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063624336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98835444,0.00017980702,0.00026380777,0.01028073,0.00004164224,0.00058463484,0.00004744404,0.000025859275,0.00022161636],"genre_scores_gemma":[0.99813277,0.0002569532,0.0009168023,0.0002380224,0.00018296596,0.000028066888,0.000060162143,0.000023895615,0.00016039243],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984192,0.00014096551,0.00016946396,0.0004848954,0.00030815884,0.00047727666],"domain_scores_gemma":[0.9991141,0.000018369425,0.000024686686,0.00050657504,0.00019690992,0.0001393808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004679174,0.00016769605,0.00015417955,0.000109745386,0.0002625774,0.000078449026,0.0004052363,0.00029766368,0.00003432603],"category_scores_gemma":[0.000056400815,0.00011029225,0.000033896744,0.00045902183,0.00028236612,0.0000060302345,0.000066107255,0.0002990288,0.000012826779],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003483134,0.00010358529,0.0008377515,0.000014252031,0.00002183505,0.0000036374752,0.00020656124,0.000012738819,0.98319435,0.00090184977,0.0001299141,0.014225228],"study_design_scores_gemma":[0.0010607904,0.008511102,0.079161614,0.000031872176,0.000020838057,0.000027805552,0.00017945429,0.00003642322,0.8664307,0.0007211636,0.043463036,0.00035522622],"about_ca_topic_score_codex":0.00003203659,"about_ca_topic_score_gemma":0.0002013025,"teacher_disagreement_score":0.11676366,"about_ca_system_score_codex":0.000020415175,"about_ca_system_score_gemma":0.00008545934,"threshold_uncertainty_score":0.44975874},"labels":[],"label_agreement":null},{"id":"W2063817763","doi":"10.1111/j.1574-6968.2012.02553.x","title":"Regulatory systems controlling motility and gene transfer agent production and release in Rhodobacter capsulatus","year":2012,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Caulobacter crescentus; Rhodobacter; Biology; Mutant; Motility; Transcription (linguistics); Cell biology; Transcription factor; Gene; Regulation of gene expression; Biochemistry; Cell cycle","score_opus":0.0070242004593889145,"score_gpt":0.18827908082659334,"score_spread":0.1812548803672044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063817763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99393135,0.0041480334,0.00012039233,0.00065414986,0.00076294167,0.00033366075,0.000031365547,0.0000139012,0.000004215539],"genre_scores_gemma":[0.9985544,0.00032196438,0.00015352812,0.00047379042,0.00034220173,0.000019630193,0.00008640582,0.000017791424,0.00003027943],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987656,0.000137833,0.00025179618,0.00042716964,0.000023007138,0.0003946345],"domain_scores_gemma":[0.99959224,0.000006556127,0.00004474619,0.00025834687,0.000021589747,0.000076545635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031667683,0.00018761429,0.00023191952,0.00006875425,0.000054590146,0.000013817668,0.00007169866,0.00037996031,0.0000026139385],"category_scores_gemma":[0.000028996907,0.0001727003,0.000035676123,0.000046927533,0.00025837732,0.0000046298005,0.000062559855,0.00014727168,0.000002124812],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008983849,0.00003515876,0.030191759,0.000020411117,0.000039520237,0.0000018328816,0.000056461504,0.000023552091,0.96900123,0.00000861844,0.00013237582,0.0003992679],"study_design_scores_gemma":[0.0010006912,0.00013024839,0.1429159,0.000024069099,0.00003715664,0.0003120632,0.00003912676,0.00001562168,0.8466519,0.0000027601402,0.008552219,0.0003182246],"about_ca_topic_score_codex":0.000047153568,"about_ca_topic_score_gemma":0.00002937559,"teacher_disagreement_score":0.12234929,"about_ca_system_score_codex":0.000021188021,"about_ca_system_score_gemma":0.000012027582,"threshold_uncertainty_score":0.70425135},"labels":[],"label_agreement":null},{"id":"W2063853836","doi":"10.1038/nsmb.2251","title":"The structural basis of transferrin sequestration by transferrin-binding protein B","year":2012,"lang":"en","type":"article","venue":"Nature Structural & Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Toronto","funders":"Canadian Institutes of Health Research; Alberta Innovates; Canadian Light Source","keywords":"Transferrin; Neisseria meningitidis; Transferrin receptor; Glycoprotein; Chemistry; Plasma protein binding; Biology; Biochemistry; Bacteria; Genetics","score_opus":0.0038190063414754983,"score_gpt":0.2610728103186219,"score_spread":0.2572538039771464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063853836","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936815,0.003500565,0.00056597317,0.0008350245,0.0006035881,0.0004959593,0.00019277161,0.000023496825,0.0001011015],"genre_scores_gemma":[0.9980437,0.00012145073,0.000775478,0.00013446197,0.0002277779,0.000028823179,0.00055064884,0.000033757686,0.00008389455],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981866,0.00020671933,0.00040693788,0.00042078295,0.00014289057,0.0006360758],"domain_scores_gemma":[0.9991921,0.000011812922,0.00012828551,0.0004493968,0.00010710327,0.00011128101],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00021197305,0.0003369148,0.00028008598,0.000055851964,0.00019497209,0.000025269335,0.00049099955,0.0012981464,0.000023021965],"category_scores_gemma":[0.000058448928,0.00023407758,0.00019257628,0.00016611202,0.0003874813,0.000008439663,0.000064794076,0.0005292936,0.0000015536267],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001306815,0.000007468513,0.00069240446,0.000013949063,0.00010151897,7.1298416e-7,0.000022803539,0.0000014459146,0.98610765,0.008049491,0.0000781424,0.0047937366],"study_design_scores_gemma":[0.00044002404,0.00042461805,0.0012136685,0.000006902531,0.000033786982,0.00003837836,0.000027237596,0.000010184508,0.9895879,0.00069422444,0.007237534,0.00028555078],"about_ca_topic_score_codex":0.00002453718,"about_ca_topic_score_gemma":0.000028483086,"teacher_disagreement_score":0.0073552667,"about_ca_system_score_codex":0.000022351767,"about_ca_system_score_gemma":0.00005157701,"threshold_uncertainty_score":0.9999984},"labels":[],"label_agreement":null},{"id":"W2063859878","doi":"10.1371/journal.pone.0108027","title":"A Biochemical Characterization of the DNA Binding Activity of the Response Regulator VicR from Streptococcus mutans","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Dental and Craniofacial Research; National Institutes of Health","keywords":"Regulon; Streptococcus mutans; Regulator; Response regulator; Bacteria; Biology; DNA; Microbiology; Antimicrobial; Computational biology; Genetics; Bacterial protein; Gene","score_opus":0.011300471227575038,"score_gpt":0.19267629547647225,"score_spread":0.1813758242488972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063859878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988982,0.000009810573,0.000024611425,0.00057721086,0.00006974434,0.00023048175,0.00016547581,0.0000060085085,0.000018448969],"genre_scores_gemma":[0.9996039,0.000015342941,0.00011274013,0.000037584585,0.00009651564,0.000009568842,0.000032282238,0.000012301862,0.000079765785],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992245,0.00014854418,0.000171438,0.00020604423,0.00013169687,0.00011779524],"domain_scores_gemma":[0.9990627,0.0000194602,0.00021383184,0.00060347025,0.00007786924,0.000022646029],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001375222,0.00009712601,0.00015760043,0.000018944938,0.000043358177,0.0000060392376,0.00031524937,0.0002551454,0.000010880193],"category_scores_gemma":[0.00025382923,0.00006352232,0.00007066008,0.00013925317,0.00017315123,0.000001625444,0.00024619923,0.00008407787,0.0000010549231],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002571393,0.00022177809,0.0031155597,0.000013966782,0.00007142342,2.8185019e-8,0.000018134531,1.2876892e-7,0.9959949,0.000010653545,0.000007212285,0.0002890245],"study_design_scores_gemma":[0.00021780664,0.00011268929,0.08112425,0.0000581676,0.00004382999,2.5001566e-7,0.0000036729843,0.000030653802,0.91800374,0.000019407997,0.00031598847,0.000069526686],"about_ca_topic_score_codex":0.000007731531,"about_ca_topic_score_gemma":0.0000062621602,"teacher_disagreement_score":0.07800869,"about_ca_system_score_codex":0.000008720258,"about_ca_system_score_gemma":0.00004849647,"threshold_uncertainty_score":0.2590365},"labels":[],"label_agreement":null},{"id":"W2063876020","doi":"10.1007/s10529-005-6717-3","title":"Cloning and characterization of a bile salt hydrolase (bsh) from Bifidobacterium adolescentis","year":2005,"lang":"en","type":"article","venue":"Biotechnology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bifidobacterium; Cloning (programming); Gene; Biology; Nucleic acid sequence; Escherichia coli; Molecular cloning; Bifidobacterium longum; Biochemistry; Homology (biology); Coding region; Hydrolase; Molecular biology; Peptide sequence; Bacteria; Genetics; Enzyme; Lactobacillus","score_opus":0.003885586070523591,"score_gpt":0.18751697518742372,"score_spread":0.18363138911690013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063876020","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893555,0.00025863107,0.0013779836,0.008436031,0.00020881671,0.0001718979,0.0001165246,0.000066473855,0.000008147366],"genre_scores_gemma":[0.99480987,0.00067442557,0.002779427,0.001090268,0.00027328674,0.000011436761,0.00030945995,0.000029224408,0.000022583381],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988086,0.000035770023,0.00030602096,0.00048913603,0.00007065756,0.00028980974],"domain_scores_gemma":[0.999264,0.000005121658,0.00018699717,0.00046417545,0.000028827517,0.000050855262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007572185,0.00020677193,0.00023522243,0.00015836341,0.000057317597,0.00001749926,0.000252879,0.0007220171,0.000019287449],"category_scores_gemma":[0.00002598236,0.00020935823,0.00006181457,0.00014228157,0.00035856327,0.000006721701,0.0002561442,0.00017327847,0.0000102729855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006643584,0.000047993493,0.001336568,0.000010419037,0.000047053418,0.000002469857,0.000014989918,0.0000012306007,0.98446965,0.000043231077,0.00012416604,0.013835805],"study_design_scores_gemma":[0.0005077982,0.00015891375,0.0103762075,0.000020855923,0.000023553994,0.000018718047,0.000007919092,0.000052180767,0.9457209,0.000009602473,0.042894088,0.00020926482],"about_ca_topic_score_codex":0.000032427342,"about_ca_topic_score_gemma":0.00002837734,"teacher_disagreement_score":0.04276992,"about_ca_system_score_codex":0.000012814961,"about_ca_system_score_gemma":0.000017066508,"threshold_uncertainty_score":0.85373807},"labels":[],"label_agreement":null},{"id":"W2063908100","doi":"10.1016/j.resmic.2013.03.018","title":"Assembly of the type II secretion system","year":2013,"lang":"en","type":"review","venue":"Research in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Saskatchewan Health","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Periplasmic space; Peptidoglycan; Cell envelope; Biology; Secretion; Inner membrane; Integral membrane protein; Bacterial outer membrane; Cell biology; Membrane protein; Extracellular; Cell membrane; Type VI secretion system; Membrane; Cell wall; Biochemistry; Escherichia coli; Gene","score_opus":0.06788677198014963,"score_gpt":0.36774384348933337,"score_spread":0.2998570715091837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063908100","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01700889,0.98081434,0.0000017106752,0.00005985282,0.00060255616,0.0010338082,0.000075599004,0.000006712366,0.0003965312],"genre_scores_gemma":[0.007921596,0.9908694,0.00007275723,0.000007457537,0.00021222416,0.00008025358,0.00031220884,0.00003542927,0.0004886925],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972897,0.0010725498,0.0005310973,0.00051069516,0.00007672426,0.0005192215],"domain_scores_gemma":[0.9986297,0.000042759562,0.0002222269,0.00083449826,0.00023161412,0.000039182964],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0009363818,0.00024072829,0.0007551002,0.00023260168,0.00009528116,0.000011744644,0.0009890115,0.0016284358,0.000022078282],"category_scores_gemma":[0.00011432588,0.00015224371,0.000215628,0.00055560406,0.00045415072,0.0000010037653,0.0013551165,0.0006746194,0.000051750867],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014827239,0.000051317656,0.000005751861,0.0036643483,0.00008430342,0.000001999151,0.0000047520557,3.0903962e-7,0.8495287,0.00029564867,0.0021615054,0.14418654],"study_design_scores_gemma":[0.0001088505,0.0004607114,0.0000031949396,0.0016409784,0.000023576657,0.000105263985,0.000014000184,9.617776e-7,0.01231368,0.0000077306295,0.985172,0.00014907778],"about_ca_topic_score_codex":0.000056079327,"about_ca_topic_score_gemma":0.00003417428,"teacher_disagreement_score":0.9830105,"about_ca_system_score_codex":0.0000865939,"about_ca_system_score_gemma":0.00049722847,"threshold_uncertainty_score":0.99966764},"labels":[],"label_agreement":null},{"id":"W2063924424","doi":"10.1139/w11-035","title":"A new method for multiple gene inactivations in <i>Bacillus subtilis</i> 168, producing a strain free of selectable markers","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Government of Jiangsu Province","keywords":"Bacillus subtilis; Gene; Genetics; Biology; Gene duplication; Homologous recombination; Tandem exon duplication; Auxotrophy; Selectable marker; Molecular biology; Repressor; Plasmid; Escherichia coli; Gene expression; Bacteria","score_opus":0.013608107195622112,"score_gpt":0.2172627564432918,"score_spread":0.20365464924766968,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063924424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9867768,0.0008869522,0.010890123,0.00034183147,0.00033139696,0.00027971558,0.00039469847,0.0000016211611,0.00009682109],"genre_scores_gemma":[0.88615656,0.000054296495,0.11328996,0.00014700633,0.00014588039,0.0000053214885,0.000058336533,0.000019472207,0.00012313882],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989369,0.00007784647,0.0004118528,0.00021271236,0.000017289125,0.0003434369],"domain_scores_gemma":[0.9991226,0.000022935254,0.0002564901,0.0002449174,0.00019631797,0.00015672614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040534875,0.00012761689,0.00027359521,0.00024144133,0.000038436923,0.0000054466545,0.0003572694,0.00032942064,0.000040748382],"category_scores_gemma":[0.00038944947,0.00012336817,0.0000990654,0.00015102552,0.00008801292,0.0000034328712,0.000033321176,0.0001425193,3.4813849e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018855844,0.000019358562,0.0017404275,0.000010270356,0.00007003975,0.000004777074,0.00015486445,0.000011812892,0.9910323,0.000034083856,0.0027785767,0.0039549028],"study_design_scores_gemma":[0.0012873495,0.000875813,0.0019118772,0.000019979338,0.000022990844,0.00025018066,0.00010728448,0.0000064196897,0.96062434,0.00024341315,0.034510575,0.0001397787],"about_ca_topic_score_codex":0.0053346995,"about_ca_topic_score_gemma":0.07655581,"teacher_disagreement_score":0.10239984,"about_ca_system_score_codex":0.00004427351,"about_ca_system_score_gemma":0.0013912799,"threshold_uncertainty_score":0.9402946},"labels":[],"label_agreement":null},{"id":"W2064147760","doi":"10.1046/j.1365-2958.2000.01741.x","title":"Lipopolysaccharide core phosphates are required for viability and intrinsic drug resistance in <i>Pseudomonas aeruginosa</i>","year":2000,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Canadian Respiratory Research Network","funders":"Cystic Fibrosis Foundation","keywords":"Biology; Pseudomonas aeruginosa; Mutant; Novobiocin; Bacterial outer membrane; Microbiology; Regulon; Heptose; Lipid A; Gene; Molecular biology; Biochemistry; Bacteria; Escherichia coli; Genetics; Antibiotics","score_opus":0.0058545254221431175,"score_gpt":0.2122654927536748,"score_spread":0.20641096733153166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064147760","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931322,0.004625094,0.00010815103,0.0011317795,0.00014728178,0.0005735599,0.0001266412,0.000025482497,0.00012983201],"genre_scores_gemma":[0.99486667,0.000576515,0.002722578,0.000758249,0.00006997559,0.000084956075,0.00023091424,0.000034286197,0.0006558348],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99824005,0.00008204394,0.00036786683,0.0007912397,0.00003182415,0.00048696276],"domain_scores_gemma":[0.99923146,0.00002265237,0.00010935984,0.00049885834,0.000067553316,0.0000701066],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022639218,0.0002781624,0.00035779498,0.00006400811,0.000073529496,0.000020571995,0.00028593806,0.0004689848,0.000032380023],"category_scores_gemma":[0.000074464406,0.0002785387,0.000099990735,0.000104387815,0.00036810382,0.0000034563295,0.00013831827,0.00014259967,0.0000074550903],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045140585,0.00007070628,0.0014413815,0.000036428362,0.000032412667,0.000012960155,0.000024201254,0.0000029045716,0.9941445,0.00031117577,0.0008435127,0.002628396],"study_design_scores_gemma":[0.0011120978,0.0001431547,0.00054142147,0.000020510051,0.000017173721,0.00003428821,0.000016213617,0.0000036806828,0.8596105,0.0009861888,0.13720359,0.000311197],"about_ca_topic_score_codex":0.00003351802,"about_ca_topic_score_gemma":0.00045658927,"teacher_disagreement_score":0.13636008,"about_ca_system_score_codex":0.000022793698,"about_ca_system_score_gemma":0.000044993212,"threshold_uncertainty_score":0.9999667},"labels":[],"label_agreement":null},{"id":"W2064185127","doi":"10.1016/j.chembiol.2012.10.003","title":"Discovery of an Iron-Regulated Citrate Synthase in Staphylococcus aureus","year":2012,"lang":"en","type":"article","venue":"Chemistry & Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Western University","funders":"Canadian Institutes of Health Research","keywords":"Siderophore; Citrate synthase; Biochemistry; Biology; Enzyme; Staphylococcus aureus; Biosynthesis; Gene cluster; Bacteria; Microbiology; Human pathogen; Gene; Genetics","score_opus":0.00755533478240492,"score_gpt":0.2399403735297075,"score_spread":0.2323850387473026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064185127","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979247,0.0011542983,0.000044676355,0.00006146098,0.00018576575,0.00011591353,0.0001125761,0.000015745558,0.00038487877],"genre_scores_gemma":[0.9984154,0.0001537682,0.000273271,0.0000543185,0.00034406534,0.000017082215,0.00056696305,0.000022182778,0.00015295143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986652,0.000055736535,0.00034348055,0.00039176256,0.000046835194,0.00049698644],"domain_scores_gemma":[0.99914074,0.000009032411,0.0001460318,0.0005653919,0.00004318325,0.00009561278],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001843835,0.00022526327,0.00027888594,0.00003930682,0.000026323896,0.000009254985,0.00032933574,0.00074218214,0.000040898816],"category_scores_gemma":[0.00006041888,0.00020810822,0.00008009927,0.00012586417,0.0003227698,0.0000079350975,0.00017396944,0.0001520632,0.0000032898627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013537455,0.00024031402,0.006884506,0.00003430708,0.000026126498,0.0000018464453,0.000015787058,0.0000055626606,0.9912361,0.00004722173,0.000041802334,0.0013310601],"study_design_scores_gemma":[0.000524851,0.00019678105,0.0057392945,0.000009133157,0.000012997515,0.000010906391,0.00004775369,0.000012970637,0.989357,0.00007442246,0.0037698206,0.00024410216],"about_ca_topic_score_codex":0.00003534899,"about_ca_topic_score_gemma":0.000016424869,"teacher_disagreement_score":0.0037280181,"about_ca_system_score_codex":0.000016321297,"about_ca_system_score_gemma":0.000064483924,"threshold_uncertainty_score":0.8486407},"labels":[],"label_agreement":null},{"id":"W2064225406","doi":"10.1371/journal.pone.0007285","title":"Subcellular Min Oscillations as a Single-Cell Reporter of the Action of Polycations, Protamine, and Gentamicin on Escherichia coli","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Protamine; Extracellular; Escherichia coli; Intracellular; Biophysics; Aminoglycoside; Gentamicin; Chemistry; Biochemistry; Biology; Antibiotics","score_opus":0.0257398497074364,"score_gpt":0.2172261392773513,"score_spread":0.1914862895699149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064225406","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841803,0.00014728497,0.000021435102,0.0006237144,0.000025408752,0.00032599038,0.000010595329,0.00000448851,0.0004230586],"genre_scores_gemma":[0.99822855,0.000097576405,0.000867961,0.00009480833,0.000042505784,0.0000063371253,0.000023323144,0.000006559276,0.00063238054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944264,0.000026587746,0.00020219853,0.00015833239,0.00008888635,0.000081379716],"domain_scores_gemma":[0.9994372,0.0000040177456,0.00018014669,0.00029252036,0.00006632135,0.000019761028],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054656408,0.00007377861,0.00010787016,0.000029324263,0.00003392039,0.0000049580467,0.00007639538,0.00014012624,0.00000610756],"category_scores_gemma":[0.0000454403,0.000059388534,0.000032701402,0.00008614452,0.00006919981,0.0000013480296,0.000031866217,0.000047272475,7.013603e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004346951,0.0006618907,0.0010745926,0.000018933679,0.000027085138,1.6416226e-7,0.000015611478,0.0000011546596,0.99768597,0.000044856195,0.00003319822,0.00039310034],"study_design_scores_gemma":[0.00021162171,0.0008020296,0.010107177,0.000022441067,0.000042154687,0.0000015124604,0.00001872586,0.000019583167,0.9881456,0.00006450828,0.0005026789,0.00006197501],"about_ca_topic_score_codex":0.000012860215,"about_ca_topic_score_gemma":0.000011015397,"teacher_disagreement_score":0.009540351,"about_ca_system_score_codex":0.000006113064,"about_ca_system_score_gemma":0.00003055037,"threshold_uncertainty_score":0.24217942},"labels":[],"label_agreement":null},{"id":"W2064274220","doi":"10.1039/c0mb00329h","title":"Receptor domains of two-component signal transduction systems","year":2011,"lang":"en","type":"review","venue":"Molecular BioSystems","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Histidine kinase; Signal transduction; Two-component regulatory system; Biology; Component (thermodynamics); Cell biology; Computational biology; Receptor; Kinase; Function (biology); Biochemistry; Histidine; Gene; Amino acid","score_opus":0.019460715369891288,"score_gpt":0.26098136752957596,"score_spread":0.24152065215968466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064274220","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034594731,0.9915225,0.0011777476,0.0000059928025,0.0017873053,0.0013775405,0.00033609,0.00003742506,0.00029595208],"genre_scores_gemma":[0.016327586,0.9812437,0.00030919985,0.000007759534,0.0006092102,0.00016845552,0.0010222631,0.00013996448,0.00017184939],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968261,0.00045644917,0.0011622584,0.0008724478,0.00022476388,0.00045796475],"domain_scores_gemma":[0.9978954,0.000008047639,0.00078801846,0.001030096,0.00014264393,0.0001357876],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00037910123,0.0006625666,0.0016263424,0.00024764746,0.00005807007,0.000036785423,0.00068187265,0.0013560441,0.00004886297],"category_scores_gemma":[0.0000122804,0.0005699916,0.0008187023,0.00027393503,0.00017134064,0.000002210001,0.00016805455,0.00027077683,0.000047255286],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033606913,0.00014658803,0.0000014852421,0.008875451,0.00079144194,0.000011444126,0.000013927368,0.0000034675534,0.9059965,0.0008866826,0.00031766985,0.08292175],"study_design_scores_gemma":[0.00033926696,0.00040510384,1.4184268e-7,0.0023081026,0.00042775783,0.00015870064,0.000014605805,0.00000227816,0.09182797,0.0000057839884,0.9039529,0.00055738864],"about_ca_topic_score_codex":0.00011160227,"about_ca_topic_score_gemma":0.0000059573977,"teacher_disagreement_score":0.9036352,"about_ca_system_score_codex":0.000047093028,"about_ca_system_score_gemma":0.00020055614,"threshold_uncertainty_score":0.9999404},"labels":[],"label_agreement":null},{"id":"W2064354495","doi":"10.1093/nar/gkg271","title":"Glutamate at the phosphorylation site of response regulator CtrA provides essential activities without increasing DNA binding","year":2003,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Medical Research Council; Canadian Institutes of Health Research","keywords":"Caulobacter crescentus; Biology; Response regulator; DNA replication; Cell cycle; DNA; Cell biology; Regulator; DNA-binding protein; Phosphorylation; Molecular biology; Genetics; Mutant; Cell; Gene; Transcription factor","score_opus":0.0169486514038624,"score_gpt":0.29352946551180575,"score_spread":0.27658081410794333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064354495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986097,0.00025736546,0.000024926525,0.00027902974,0.00009740656,0.0003257336,0.000028640108,0.000014621303,0.0003625498],"genre_scores_gemma":[0.9978838,0.00014913506,0.00045511712,0.000016067142,0.000086536355,0.00001917286,0.000026803642,0.000033418426,0.0013299404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99776477,0.00084309006,0.00023698987,0.0003679282,0.00035257483,0.0004346793],"domain_scores_gemma":[0.9990452,0.00009630117,0.00010388844,0.00054630544,0.00014533426,0.00006297074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002361861,0.00014527387,0.0001656509,0.00012387882,0.0003594078,0.000061201674,0.00024274853,0.00032345994,0.000080108344],"category_scores_gemma":[0.00065149524,0.000111683825,0.0000748474,0.00026483997,0.00066176493,0.000007638887,0.00030540556,0.00022057518,0.00001629769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020535244,0.00003669343,0.0046671834,0.000021336202,0.000037410602,0.0000016646553,0.000130952,0.000003493923,0.99173325,0.00013256575,0.0001935479,0.0009883636],"study_design_scores_gemma":[0.00039044267,0.00034927527,0.0074533154,0.000022239752,0.000009927551,0.000027526796,0.00022975983,0.000033095854,0.9736094,0.00006457377,0.017684724,0.00012572565],"about_ca_topic_score_codex":0.000041459498,"about_ca_topic_score_gemma":0.000045371547,"teacher_disagreement_score":0.01812387,"about_ca_system_score_codex":0.000058598613,"about_ca_system_score_gemma":0.00018159024,"threshold_uncertainty_score":0.4554334},"labels":[],"label_agreement":null},{"id":"W2064513760","doi":"10.1021/bi101683a","title":"ProQ Is an RNA Chaperone that Controls ProP Levels in <i>Escherichia coli</i>","year":2011,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Alberta","funders":"Canadian Institutes of Health Research; University of Guelph","keywords":"rpoS; RNA; Escherichia coli; Transcription (linguistics); Biology; RNA polymerase; Cell biology; Sigma factor; Promoter; Chemistry; Biochemistry; Molecular biology; Gene expression; Gene","score_opus":0.031027491631399465,"score_gpt":0.2338036958410636,"score_spread":0.20277620420966413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064513760","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99585825,0.0005605108,0.00005279622,0.00016285051,0.00012708994,0.0002941758,0.00007110366,0.000032355547,0.0028408598],"genre_scores_gemma":[0.99664384,0.00011304458,0.0013803376,0.00067305035,0.00021870775,0.00006731813,0.000078697056,0.000036456193,0.000788529],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998543,0.000030634787,0.00025849367,0.0006236932,0.00011564797,0.00042852285],"domain_scores_gemma":[0.9990643,0.0000021594162,0.00009698851,0.0006422368,0.00006130409,0.00013298981],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00014639083,0.00026820408,0.00023615426,0.00003105526,0.0000486152,0.000024926863,0.00042999667,0.0006580765,0.00011282444],"category_scores_gemma":[0.000027494454,0.000255601,0.000073883384,0.00011745025,0.00018085763,0.000005184093,0.00016285785,0.00017772401,0.000015811087],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013518443,0.0002110735,0.0009833142,0.000027429862,0.000028635824,0.0000066004764,0.00007323902,1.3815017e-7,0.99665433,0.000017098393,0.00019955373,0.0016633781],"study_design_scores_gemma":[0.0008746403,0.00033027912,0.005505993,0.000016285363,0.000012605194,0.000011524594,0.00008187451,0.000017066575,0.98837256,0.000054460335,0.004376659,0.0003460536],"about_ca_topic_score_codex":0.000050336286,"about_ca_topic_score_gemma":0.000024234116,"teacher_disagreement_score":0.008281796,"about_ca_system_score_codex":0.000018900917,"about_ca_system_score_gemma":0.00012052511,"threshold_uncertainty_score":0.9999896},"labels":[],"label_agreement":null},{"id":"W2064710711","doi":"10.1371/journal.pone.0040064","title":"High Confidence Prediction of Essential Genes in Burkholderia Cenocepacia","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"European Commission; Cystic Fibrosis Canada","keywords":"Biology; Burkholderia cenocepacia; Gene; Genetics; Genome; Organism; Computational biology; Model organism; Burkholderia; In silico; Bacteria; Virulence","score_opus":0.020096196064417194,"score_gpt":0.2104169215140209,"score_spread":0.19032072544960368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064710711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986289,0.000795393,0.000087856584,0.000077088305,0.00014758996,0.00012172209,0.000044893026,0.0000090829035,0.00008743895],"genre_scores_gemma":[0.9973007,0.0007006577,0.0014348509,0.000023490837,0.00036800717,0.000011185823,0.000078754965,0.000010540019,0.0000718538],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993499,0.000025112062,0.00018505029,0.00015208453,0.00008950382,0.00019836679],"domain_scores_gemma":[0.9996289,0.000003126645,0.00006919109,0.00020898854,0.00005013224,0.00003968613],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009519148,0.0000834948,0.00014160792,0.000041803763,0.00001585521,0.000004861999,0.00010698943,0.00022794692,0.00004802295],"category_scores_gemma":[0.00003091523,0.0000846925,0.000025350779,0.00007021817,0.00007683215,0.0000030599263,0.00007857578,0.000056112716,0.000005365124],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041911342,0.00043667763,0.013284992,0.00002743457,0.000047472484,2.6088892e-7,0.000016733498,0.000001214111,0.98559356,0.00023827507,0.00002604816,0.00028544737],"study_design_scores_gemma":[0.00027671523,0.0001705789,0.02327527,0.000021986098,0.000026566426,0.0000017206588,0.000014554923,0.000008913634,0.97572565,0.00005466907,0.00034853004,0.000074820164],"about_ca_topic_score_codex":0.000043867418,"about_ca_topic_score_gemma":0.000018333412,"teacher_disagreement_score":0.009990277,"about_ca_system_score_codex":0.000005620716,"about_ca_system_score_gemma":0.000020394556,"threshold_uncertainty_score":0.345366},"labels":[],"label_agreement":null},{"id":"W2064876544","doi":"10.1186/1471-2091-9-33","title":"Phage display-derived inhibitor of the essential cell wall biosynthesis enzyme MurF","year":2008,"lang":"en","type":"article","venue":"BMC Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Université Laval","keywords":"DNA ligase; Biochemistry; Biosynthesis; Enzyme; Dipeptide; Biology; Peptide; Chemistry","score_opus":0.006973352598430943,"score_gpt":0.1968383902203261,"score_spread":0.18986503762189516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064876544","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99810404,0.00067416974,0.0001192763,0.00013040206,0.00025055514,0.0001423572,0.00007561931,0.000018066983,0.00048549494],"genre_scores_gemma":[0.9972551,0.00021926503,0.0008323684,0.00008511814,0.00037265217,0.000012467225,0.00006249706,0.000029358709,0.0011311754],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874985,0.000039565148,0.00030632335,0.00044810504,0.00015790733,0.00029825815],"domain_scores_gemma":[0.9988686,0.0000122588835,0.00019279496,0.0007772613,0.00007447352,0.000074656076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000072840034,0.00023817713,0.00020511405,0.000021339863,0.00012299787,0.000010323095,0.00054372847,0.0005461002,0.000048389014],"category_scores_gemma":[0.0000690007,0.00018512657,0.00023085786,0.00012534339,0.00046158544,0.0000019205804,0.00036133258,0.00013487897,0.000008329525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007312246,0.00013783659,0.001412064,0.00006614987,0.00002594885,0.0000021452774,0.000014268387,0.000002782129,0.99692184,0.0000036720699,0.0012603733,0.000079828955],"study_design_scores_gemma":[0.0004936092,0.000067383124,0.0015168493,0.000015623316,0.000028256267,0.00003705998,0.000025690984,0.000014815402,0.9935288,0.0000066281495,0.0040368605,0.00022845849],"about_ca_topic_score_codex":0.0000179919,"about_ca_topic_score_gemma":0.000009286616,"teacher_disagreement_score":0.0033930428,"about_ca_system_score_codex":0.000012660855,"about_ca_system_score_gemma":0.00017635974,"threshold_uncertainty_score":0.75492424},"labels":[],"label_agreement":null},{"id":"W2064912298","doi":"10.1128/jb.06565-11","title":"Oligomerization of the Response Regulator ComE from Streptococcus mutans Is Affected by Phosphorylation","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Dental and Craniofacial Research; University of Illinois at Chicago; National Institutes of Health","keywords":"Phosphorylation; Biology; Response regulator; Regulator; Footprinting; Streptococcus mutans; Function (biology); DNA footprinting; DNA; Cell biology; Plasma protein binding; DNA-binding protein; Biochemistry; Genetics; Bacteria; Bacterial protein; Transcription factor; Gene; Base sequence","score_opus":0.007992290167978722,"score_gpt":0.2110937105290937,"score_spread":0.20310142036111498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064912298","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984606,0.00029271713,0.00023983356,0.00023321024,0.0005089159,0.00012291821,0.00010827323,0.0000034564337,0.00003005904],"genre_scores_gemma":[0.99905103,0.00017348136,0.0004292942,0.00013971733,0.000105418054,0.000002235438,0.00003270024,0.00001421505,0.00005188037],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892557,0.00023245503,0.0004635448,0.0001589624,0.00008007636,0.00013938372],"domain_scores_gemma":[0.9987149,0.000017642164,0.0006886606,0.00032220484,0.00021169226,0.000044898556],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020982263,0.00012351618,0.00025022088,0.00005155983,0.00003650119,0.0000058209716,0.0003162383,0.00038169647,0.000111340014],"category_scores_gemma":[0.00013961147,0.00008963911,0.000117477015,0.00012703746,0.0001910803,0.000004818278,0.00009842171,0.00012747868,0.0000016595592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010917743,0.00007135021,0.0071388283,0.0000029037465,0.00009200488,0.0000010292341,0.00009860456,0.0000010990207,0.99027485,0.000009789492,0.00032307426,0.00089469773],"study_design_scores_gemma":[0.00045205173,0.00079423474,0.2338929,0.000013256371,0.000029260898,0.000016989536,0.000022144457,0.000004523411,0.7592905,0.00010759718,0.005302221,0.00007431507],"about_ca_topic_score_codex":0.000029065717,"about_ca_topic_score_gemma":0.000007877589,"teacher_disagreement_score":0.23098435,"about_ca_system_score_codex":0.000014647772,"about_ca_system_score_gemma":0.00010535066,"threshold_uncertainty_score":0.36553764},"labels":[],"label_agreement":null},{"id":"W2066051465","doi":"10.3389/fmicb.2015.00382","title":"Eukaryote-like Ser/Thr protein kinase PrkA modulates sporulation via regulating the transcriptional factor σK in Bacillus subtilis","year":2015,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China; National Key Research and Development Program of China; McMaster University","keywords":"Bacillus subtilis; Biology; Gene; Mutant; Complementation; Kinase; Protein kinase A; Transcriptional regulation; Cell biology; Genetics; Gene expression; Molecular biology; Bacteria","score_opus":0.01034055518065114,"score_gpt":0.20295042957056428,"score_spread":0.19260987438991314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066051465","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99305695,0.0017321901,0.0029215526,0.00065137964,0.00094540126,0.00056586834,0.00007715305,0.000017524313,0.000032006566],"genre_scores_gemma":[0.99345946,0.00006382469,0.0053328522,0.00015957037,0.00015437871,0.000042507098,0.00052784674,0.000026123455,0.00023342004],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99835825,0.00020001987,0.00042084703,0.000522322,0.000057356818,0.0004412217],"domain_scores_gemma":[0.9993645,0.000005980558,0.0001262579,0.0003700549,0.00007470245,0.00005853865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003212303,0.00024732875,0.0002811798,0.00014444176,0.000056822995,0.000018242037,0.00033784303,0.0006663387,0.00001620203],"category_scores_gemma":[0.00005228972,0.00020358307,0.00007906291,0.0002069613,0.00027594905,0.000007944733,0.00011614855,0.00025825066,0.000005212362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027519287,0.00005816013,0.021328093,0.000010683554,0.000024121586,0.00000452152,0.00012942072,0.0003403072,0.973276,0.000028668575,0.00044879,0.0040760487],"study_design_scores_gemma":[0.0037578712,0.00081414584,0.060867917,0.000055470333,0.000019142757,0.00010252597,0.00043975934,0.0024138554,0.84770846,0.0022835964,0.08068143,0.000855849],"about_ca_topic_score_codex":0.00008791214,"about_ca_topic_score_gemma":0.00033712984,"teacher_disagreement_score":0.12556756,"about_ca_system_score_codex":0.000079241225,"about_ca_system_score_gemma":0.000099420795,"threshold_uncertainty_score":0.8301877},"labels":[],"label_agreement":null},{"id":"W2066079289","doi":"10.1074/jbc.m109.010108","title":"Autoprocessing of the Escherichia coli AIDA-I Autotransporter","year":2009,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Department of Education of Guangdong Province","keywords":"Escherichia coli; Cleavage (geology); Mutant; Chemistry; Point mutation; Bacterial outer membrane; Bacterial adhesin; Biochemistry; Amino acid; Protein folding; Biology; Gene","score_opus":0.010712465976010927,"score_gpt":0.22859660244160124,"score_spread":0.21788413646559032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066079289","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979311,0.00060123,0.0001293313,0.0006686613,0.00011114677,0.00003729797,0.0000060491843,0.0000043367236,0.0005108304],"genre_scores_gemma":[0.99830693,0.00017590824,0.00082869537,0.00029508854,0.0002819212,4.3397188e-7,0.0000044993326,0.0000045818265,0.000101926096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991732,0.000021689177,0.0003999406,0.00014038756,0.00010364731,0.00016112413],"domain_scores_gemma":[0.99922776,0.000005471444,0.00038441352,0.00020148045,0.00012672153,0.000054155105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001645988,0.00012167178,0.00021453138,0.000009695992,0.000038761616,0.000009704719,0.00041400333,0.00041087443,0.00003779375],"category_scores_gemma":[0.00008298756,0.0000688662,0.00019902248,0.00009613888,0.00017455815,0.0000020609918,0.00004761084,0.00021896372,3.4513133e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089189765,0.00008113343,0.0011348844,0.000010344127,0.000022283431,0.0000028672282,0.000006291628,0.0000075727344,0.9961207,0.000008213438,0.00014439135,0.0023721186],"study_design_scores_gemma":[0.0002896725,0.00035522474,0.023639541,0.000024092038,0.000016511447,0.000056576355,0.000016158718,0.000004075727,0.9665179,0.00024270483,0.00874582,0.00009170755],"about_ca_topic_score_codex":4.962299e-7,"about_ca_topic_score_gemma":1.8865224e-7,"teacher_disagreement_score":0.029602796,"about_ca_system_score_codex":0.000008120623,"about_ca_system_score_gemma":0.00008567829,"threshold_uncertainty_score":0.31690398},"labels":[],"label_agreement":null},{"id":"W2066080379","doi":"10.1016/j.mib.2011.12.014","title":"Silencing of foreign DNA in bacteria","year":2012,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Gene silencing; Horizontal gene transfer; Genetics; Bacteria; Function (biology); Gene; DNA; Cell biology; Computational biology; Genome","score_opus":0.05846220041547273,"score_gpt":0.3327079583124509,"score_spread":0.2742457578969782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066080379","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0063829883,0.98872566,0.0000137884645,0.0000048689926,0.004097015,0.0005215683,0.00021186219,0.00000606165,0.000036180714],"genre_scores_gemma":[0.0018323578,0.99488235,0.00016175187,0.000003862627,0.0005594291,0.000067555135,0.002444754,0.000038414088,0.000009515509],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976993,0.00025944554,0.0009504214,0.000557528,0.00002808995,0.0005051751],"domain_scores_gemma":[0.99897724,0.00002338442,0.00044310608,0.00047559926,0.000035216675,0.00004547347],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003181133,0.00040179896,0.0011822657,0.00035123076,0.000014463576,0.000005821233,0.00048027057,0.0012702084,0.00004355353],"category_scores_gemma":[0.000037626673,0.0003566764,0.00025068363,0.00024138796,0.00017496091,0.0000022805932,0.00041025676,0.00038386343,0.00001872371],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029077744,0.00023937349,0.00022298191,0.009545179,0.000055138917,4.2273837e-7,0.00002071069,4.3756344e-7,0.2737419,0.00020997757,0.00040035858,0.71553445],"study_design_scores_gemma":[0.00030776008,0.0001434805,0.000039545954,0.0029888416,0.00003257799,0.000048455167,0.000007871677,1.9345302e-7,0.0043632016,0.000018670149,0.9917017,0.00034770623],"about_ca_topic_score_codex":0.000008026809,"about_ca_topic_score_gemma":0.000014046808,"teacher_disagreement_score":0.99130136,"about_ca_system_score_codex":0.00004868811,"about_ca_system_score_gemma":0.00018400993,"threshold_uncertainty_score":0.99988854},"labels":[],"label_agreement":null},{"id":"W2066245377","doi":"10.1021/bi500230f","title":"Hemoglobin Binding and Catalytic Heme Extraction by IsdB Near Iron Transporter Domains","year":2014,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Heme; Chemistry; Methemoglobin; Hemoglobin; Transporter; Biochemistry; Heme oxygenase; Hemeprotein; Enzyme","score_opus":0.0035736509717477034,"score_gpt":0.20763498496600893,"score_spread":0.20406133399426124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066245377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980404,0.00043493323,0.00035717044,0.00038279995,0.00012749326,0.0000881827,0.0000635541,0.000028785777,0.0004767277],"genre_scores_gemma":[0.9972089,0.00018387403,0.0006594442,0.00017871472,0.00023220891,0.000009984237,0.0005608419,0.00002671678,0.0009393318],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989385,0.000014644039,0.00019630518,0.00048149435,0.000087546934,0.00028153742],"domain_scores_gemma":[0.99942076,0.000005412808,0.00008105214,0.0003591649,0.000025132109,0.0001084975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011255487,0.00020383962,0.0001486238,0.000016913795,0.00010521279,0.00004624439,0.00015518596,0.0004822811,0.000020773587],"category_scores_gemma":[0.00002390794,0.00020506911,0.000058877406,0.00005790667,0.00018489563,0.0000042207153,0.00006183754,0.00012122837,0.000010386578],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038299742,0.00003883916,0.00047187068,0.00004072841,0.00001673849,0.0000012717156,0.0000065130116,5.2651643e-7,0.9939998,0.0000077181085,0.0021926665,0.0031850436],"study_design_scores_gemma":[0.0004684705,0.00011935779,0.00035316692,0.0000105819145,0.00002224168,0.000048260357,0.000019533303,0.000043044158,0.9273137,0.0000124941125,0.07134112,0.00024806248],"about_ca_topic_score_codex":0.00001617194,"about_ca_topic_score_gemma":0.0000039582983,"teacher_disagreement_score":0.06914846,"about_ca_system_score_codex":0.00001672695,"about_ca_system_score_gemma":0.000030506837,"threshold_uncertainty_score":0.83624756},"labels":[],"label_agreement":null},{"id":"W2066358656","doi":"10.1016/j.ab.2015.03.033","title":"Multiplex gene removal by two-step polymerase chain reactions","year":2015,"lang":"en","type":"article","venue":"Analytical Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Illinois at Urbana-Champaign; Carnegie Institution for Science; McMaster University","keywords":"Restriction enzyme; Plasmid; Cloning (programming); Multiplex polymerase chain reaction; DNA ligase; Polymerase chain reaction; Ligase chain reaction; Synthetic biology; Gene; Molecular cloning; Biology; DNA; Computational biology; In vitro recombination; Inverse polymerase chain reaction; Sequencing by ligation; Restriction site; Restriction digest; Molecular biology; Genetics; Genomic library; Computer science; Complementary DNA; Base sequence","score_opus":0.013064920529586287,"score_gpt":0.2596234863842925,"score_spread":0.2465585658547062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066358656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927285,0.00113725,0.0008375622,0.0013779711,0.00018951843,0.00010962647,0.00013909856,0.00005287006,0.0034276159],"genre_scores_gemma":[0.9896771,0.00011235217,0.0019983333,0.00047353326,0.0006215299,0.0000120244695,0.00076693296,0.000033312863,0.006304934],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840915,0.00003513506,0.00032859726,0.00060860714,0.00018703305,0.0004314542],"domain_scores_gemma":[0.99872565,0.000010382545,0.00009051515,0.00065957167,0.00012245419,0.00039143107],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001857626,0.0002580227,0.00021644139,0.000035313024,0.0000709763,0.000038766215,0.00031705483,0.0005060171,0.000048888694],"category_scores_gemma":[0.00026498135,0.00025126673,0.00013627687,0.0001739866,0.00025282695,0.0000027639958,0.00021520178,0.00020111172,0.000049293918],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000091197275,0.00012411785,0.00016147683,0.000007328777,0.00007093723,0.000017853754,0.0000024606734,0.0000037347063,0.9768076,0.000054266726,0.021084633,0.0015744175],"study_design_scores_gemma":[0.000840119,0.00013053935,0.000015183125,0.000005138994,0.0000337736,0.00013652761,0.000038662627,0.0005524103,0.8586041,0.000030028412,0.13932443,0.00028909385],"about_ca_topic_score_codex":0.000104389444,"about_ca_topic_score_gemma":0.000009021062,"teacher_disagreement_score":0.11823979,"about_ca_system_score_codex":0.000037863963,"about_ca_system_score_gemma":0.00014397962,"threshold_uncertainty_score":0.999994},"labels":[],"label_agreement":null},{"id":"W2066661386","doi":"10.1073/pnas.1400814111","title":"Lipopolysaccharide O antigen size distribution is determined by a chain extension complex of variable stoichiometry in <i>E</i> <i>scherichia coli</i> O9a","year":2014,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Polysaccharide; Polymer; Function (biology); Escherichia coli; Biophysics; Biology; Chemistry; Biochemistry; Crystallography; Gene; Genetics; Organic chemistry","score_opus":0.01588339963174596,"score_gpt":0.2607420718136691,"score_spread":0.24485867218192314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066661386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845004,0.0001080308,0.000020936399,0.00091043394,0.00002136791,0.00012977286,0.00010411908,0.0000032793803,0.00025202517],"genre_scores_gemma":[0.9975498,0.00014250277,0.0017741044,0.0004468451,0.00004371957,0.0000044332937,0.000003359568,0.000004185236,0.000031049763],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988782,0.000011582819,0.0003376122,0.0002660194,0.00035033777,0.00015624608],"domain_scores_gemma":[0.9993505,0.00003292103,0.00038822577,0.00001965489,0.00018374233,0.000024955452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008774041,0.00009748583,0.00018182947,0.000047016645,0.00006825118,0.000007067161,0.00053595885,0.0002030956,0.000005923854],"category_scores_gemma":[0.00043660647,0.00007413573,0.000051116673,0.00051443774,0.0005258265,0.000011348447,0.00016012696,0.00008994491,1.8600022e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003048088,0.00005469322,0.0025844818,0.000026899463,0.000007438932,1.2734048e-9,0.0000137528505,0.00000692099,0.99494845,0.0012370567,0.00089972577,0.00019007926],"study_design_scores_gemma":[0.00024487547,0.00014974624,0.027531773,0.0000313225,0.000005616655,0.0000026658388,0.000024032586,0.000673705,0.9672146,0.0023034809,0.0017368958,0.000081272774],"about_ca_topic_score_codex":0.000020278356,"about_ca_topic_score_gemma":2.0396601e-7,"teacher_disagreement_score":0.027733855,"about_ca_system_score_codex":0.00000943371,"about_ca_system_score_gemma":0.000025665871,"threshold_uncertainty_score":0.30231673},"labels":[],"label_agreement":null},{"id":"W2066883769","doi":"10.1074/jbc.m311720200","title":"Dimerization of TonB Is Not Essential for Its Binding to the Outer Membrane Siderophore Receptor FhuA of Escherichia coli","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Universität Konstanz","keywords":"Bacterial outer membrane; Ferrichrome; Escherichia coli; Siderophore; Cytoplasm; Biology; Chemiosmosis; Colicin; Biochemistry; Biophysics; Gene","score_opus":0.01650018998870301,"score_gpt":0.25061249276632236,"score_spread":0.23411230277761935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066883769","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961072,0.00017072314,0.00092969614,0.0023077065,0.0002025109,0.00013952957,0.0001134158,0.000002482439,0.000026737545],"genre_scores_gemma":[0.99627435,0.00027722414,0.0026594081,0.000214659,0.00041044134,0.000004917194,0.00004178934,0.000009907482,0.000107275075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901736,0.000018901888,0.00048777155,0.00017827726,0.00013126453,0.00016644875],"domain_scores_gemma":[0.9989502,0.000017516642,0.00044495348,0.00016947639,0.00035288217,0.00006498369],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022864263,0.0001322919,0.0002754296,0.000020118103,0.00003837664,0.000009926424,0.000330209,0.0004095427,0.000050249473],"category_scores_gemma":[0.0003111651,0.0000831303,0.00018898868,0.000108569926,0.00011003138,0.0000025109869,0.00011248589,0.00012363888,0.0000011444093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046812982,0.00008252718,0.00005096831,0.000041486743,0.00007344053,7.4803654e-7,0.000024535999,0.00004734768,0.99859506,0.000010610732,0.0002528819,0.0003522431],"study_design_scores_gemma":[0.0006057316,0.0007277892,0.00012182154,0.000029002651,0.000026224003,0.000013818843,0.00006073093,0.0000032451712,0.9891888,0.000019453193,0.0091010295,0.0001023585],"about_ca_topic_score_codex":0.0000014796375,"about_ca_topic_score_gemma":4.863188e-7,"teacher_disagreement_score":0.009406285,"about_ca_system_score_codex":0.000012611298,"about_ca_system_score_gemma":0.00007649893,"threshold_uncertainty_score":0.33899552},"labels":[],"label_agreement":null},{"id":"W2067298056","doi":"10.1101/gr.133850.111","title":"A vast collection of microbial genes that are toxic to bacteria","year":2012,"lang":"en","type":"article","venue":"Genome Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Basic Energy Sciences; National Institute of Allergy and Infectious Diseases; Office of Science; National Institutes of Health; Azrieli Foundation; Israel Science Foundation; U.S. Department of Energy","keywords":"Biology; Cloning (programming); Gene; Genome; Escherichia coli; Genetics; Computational biology; Molecular cloning; DNA; Gene expression","score_opus":0.05156447332761491,"score_gpt":0.31652633912243955,"score_spread":0.2649618657948246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067298056","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976912,0.0010182525,0.00009711736,0.00030337906,0.00026237007,0.0002957684,0.000050622322,0.0000075222943,0.00027375956],"genre_scores_gemma":[0.99684006,0.00047975525,0.0011148038,0.000039082686,0.00054749515,0.000030973537,0.000041848336,0.000021481423,0.00088451314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987632,0.00011806863,0.000154078,0.00025945433,0.00016269201,0.0005425223],"domain_scores_gemma":[0.9992798,0.000010224798,0.000048731803,0.0003719955,0.00017137777,0.00011789926],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056244805,0.00010818553,0.00015096669,0.00018454497,0.000104275976,0.000020929676,0.00026439223,0.00026854157,0.00009668235],"category_scores_gemma":[0.00006222202,0.00010271851,0.000058389553,0.000318245,0.00011238952,0.0000026302578,0.0003890798,0.000117504285,0.000058248363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013189191,0.00008464454,0.0034637165,0.00002271176,0.000029748246,5.048844e-7,0.000055275643,0.0000012823936,0.9937114,0.000017650118,0.0009919313,0.0014892069],"study_design_scores_gemma":[0.00013735385,0.0003490695,0.036219716,0.000007258403,0.000003677089,0.000012421263,0.00007884952,3.726045e-7,0.83036846,0.000006928404,0.132713,0.00010291778],"about_ca_topic_score_codex":0.000034984972,"about_ca_topic_score_gemma":0.000055541674,"teacher_disagreement_score":0.163343,"about_ca_system_score_codex":0.00003065094,"about_ca_system_score_gemma":0.000072221825,"threshold_uncertainty_score":0.41887394},"labels":[],"label_agreement":null},{"id":"W2067739240","doi":"10.1016/j.jmb.2006.06.035","title":"Two-way Interdomain Signal Transduction in Tetracycline Repressor","year":2006,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"TetR; Repressor; HAMP domain; Allosteric regulation; Binding domain; DNA-binding domain; Mutant; Biophysics; Binding site; Plasma protein binding; Chemistry; Protein domain; Biology; Transcription factor; Biochemistry; Gene; Enzyme","score_opus":0.004588393139430405,"score_gpt":0.25040650413507537,"score_spread":0.24581811099564496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067739240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9839173,0.0014189106,0.0132054975,0.0006221378,0.00033553637,0.00009379515,0.00000839322,0.0000041947133,0.00039424683],"genre_scores_gemma":[0.9948593,0.0001458844,0.004203336,0.00015387328,0.00052034215,0.0000031309648,0.00003392759,0.000018481853,0.00006174249],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986147,0.00016513956,0.0006179359,0.0002610126,0.000077867786,0.00026330163],"domain_scores_gemma":[0.9993239,0.00001031558,0.00029220586,0.00021804776,0.0001095478,0.00004599254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039683795,0.00016306783,0.00027931092,0.00019579122,0.000022361022,0.000012045052,0.00026666696,0.0003671224,0.00005911931],"category_scores_gemma":[0.000048599904,0.00014108958,0.00017409193,0.0001331311,0.00014273307,0.0000034917305,0.00006228583,0.0002504032,0.0000029340163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025645545,0.00013631526,0.0017400765,0.000004370415,0.000038022485,0.00005537721,0.000005084549,0.00020838497,0.9925487,0.00043111126,0.00014219913,0.0044338736],"study_design_scores_gemma":[0.0015407158,0.0010085256,0.002361463,0.000014775432,0.000020848835,0.0003955708,0.000017676124,0.00001791523,0.9807494,0.0029280803,0.010782306,0.00016272317],"about_ca_topic_score_codex":0.000029993313,"about_ca_topic_score_gemma":0.00006045216,"teacher_disagreement_score":0.01179933,"about_ca_system_score_codex":0.000019943283,"about_ca_system_score_gemma":0.00005059154,"threshold_uncertainty_score":0.5753466},"labels":[],"label_agreement":null},{"id":"W2068017761","doi":"10.1016/s0300-9084(02)00010-x","title":"Kinetic properties of rrn promoters in Escherichia coli","year":2002,"lang":"en","type":"article","venue":"Biochimie","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia Hospital","funders":"National Institutes of Health; Medical Research Council Canada; National Institute for Health and Care Research","keywords":"Operon; Stringent response; RNA polymerase; Promoter; Biology; lac operon; Transcription (linguistics); Ribosomal RNA; Molecular biology; Gene; RNA; Gene expression; Escherichia coli; Genetics","score_opus":0.01757090816475844,"score_gpt":0.200118920192292,"score_spread":0.18254801202753357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068017761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970022,0.0015598177,0.000013688423,0.00033023139,0.00012994425,0.00019286606,0.0000066780544,0.000010029401,0.0007545684],"genre_scores_gemma":[0.9982354,0.0003955881,0.00057635375,0.000097709155,0.00007437325,0.00001574524,0.000008256596,0.000015746466,0.0005808293],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923784,0.000030266074,0.00021363709,0.0002458416,0.00006647505,0.0002059659],"domain_scores_gemma":[0.9995872,0.0000012847976,0.000064876105,0.00027959287,0.000031873566,0.000035185796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006097783,0.00012333243,0.000144389,0.00005838477,0.00001784694,0.000008294213,0.00019114744,0.00022280568,0.000058614936],"category_scores_gemma":[0.000036289523,0.000106390966,0.000047906593,0.0001259977,0.00013880733,0.0000012262648,0.00009939055,0.000068356814,0.000011546388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003218197,0.000111718924,0.00044926073,0.000025468145,0.000013463166,0.0000012091236,0.000026722502,0.000004761035,0.9964022,0.00003311928,0.00023988483,0.0026600254],"study_design_scores_gemma":[0.00039020012,0.00035581394,0.0026767883,0.000024342267,0.00000625375,0.0000037092195,0.000015589627,0.00009946506,0.9860166,0.000012792497,0.010254389,0.00014407297],"about_ca_topic_score_codex":0.00002779371,"about_ca_topic_score_gemma":0.000038013524,"teacher_disagreement_score":0.010385601,"about_ca_system_score_codex":0.0000066365365,"about_ca_system_score_gemma":0.000016385242,"threshold_uncertainty_score":0.43384975},"labels":[],"label_agreement":null},{"id":"W2068032906","doi":"10.1128/jb.182.8.2077-2087.2000","title":"RegA, Iron, and Growth Phase Regulate Expression of the <i>Pseudomonas aeruginosa tol-oprL</i> Gene Cluster","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"","keywords":"Biology; Pseudomonas aeruginosa; Cluster (spacecraft); Gene cluster; Gene; Microbiology; Pseudomonadales; Gene expression; Pseudomonadaceae; Genetics; Bacteria","score_opus":0.004972973585537878,"score_gpt":0.21711877076766367,"score_spread":0.21214579718212578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068032906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997456,0.0008295105,0.000055947286,0.0010832269,0.00033172028,0.000107633685,0.0000198961,0.0000030690064,0.00011296061],"genre_scores_gemma":[0.99637794,0.0015925966,0.0010804182,0.00036680725,0.0002975903,0.000001863786,0.000010068427,0.00001619491,0.0002565333],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987873,0.00015723266,0.0005325515,0.00021504887,0.00009005279,0.0002178458],"domain_scores_gemma":[0.99902505,0.00001444424,0.00042177583,0.0003364595,0.00012752213,0.000074732074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023400976,0.00016852721,0.0003286585,0.00005151041,0.00006143033,0.000012363081,0.0003400516,0.00039446447,0.00007562499],"category_scores_gemma":[0.000045242254,0.00010940177,0.00014078835,0.0000675232,0.0003204785,0.0000068426416,0.00016920874,0.00019166226,0.0000014794387],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005800222,0.00008378128,0.0008894431,0.000013228751,0.000030585114,0.000005098849,0.000026913325,0.0000060509947,0.99076295,0.00001189802,0.0007187923,0.0068712225],"study_design_scores_gemma":[0.0019028597,0.0011904046,0.008739233,0.000031729265,0.00003831114,0.0006749658,0.000009223303,0.000004948183,0.95710826,0.0001817123,0.029987076,0.0001312494],"about_ca_topic_score_codex":0.000005785165,"about_ca_topic_score_gemma":0.000003922716,"teacher_disagreement_score":0.03365468,"about_ca_system_score_codex":0.000008276802,"about_ca_system_score_gemma":0.000059550806,"threshold_uncertainty_score":0.44612747},"labels":[],"label_agreement":null},{"id":"W2068137735","doi":"10.1006/jmbi.2000.3805","title":"The 1.7 Å crystal structure of BPI: a study of how two dissimilar amino acid sequences can adopt the same fold 1 1Edited by D. Rees","year":2000,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; U.S. Public Health Service; Ryerson University; University of Missouri","keywords":"Structural similarity; Crystal structure; Crystallography; Protein secondary structure; Residue (chemistry); Protein structure; Fold (higher-order function); Structural alignment; Chemistry; Sequence alignment; Peptide sequence; Computer science; Biochemistry","score_opus":0.0053605530352903025,"score_gpt":0.2406912842168666,"score_spread":0.23533073118157632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068137735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936874,0.0035914294,0.0000860438,0.0020288026,0.00023276662,0.00022017134,0.0001308042,0.0000029068833,0.000019683835],"genre_scores_gemma":[0.99834406,0.0009781022,0.00023595654,0.00017121444,0.00017553741,0.0000028457907,0.000029324143,0.000017415061,0.000045526966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99839896,0.0003464539,0.0005434794,0.0002395528,0.00018450338,0.00028704113],"domain_scores_gemma":[0.99856025,0.000031408326,0.00062712934,0.0004880714,0.00022944907,0.000063714935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002798479,0.00021968884,0.00038325443,0.000055708693,0.00010411306,0.00002353298,0.0008291056,0.00031928654,0.00002302739],"category_scores_gemma":[0.00011717108,0.00011903069,0.00017892737,0.00016532895,0.00054133945,0.000003223557,0.0001294609,0.00028227828,1.2104421e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026046077,0.000111322224,0.0010581219,0.0000056920567,0.00032673866,0.00000865748,0.00008637339,0.000028800177,0.9928595,0.000037172922,0.00058104715,0.004636105],"study_design_scores_gemma":[0.0010848184,0.004390735,0.0009211208,0.000012824183,0.000109440385,0.00014261508,0.00056800566,0.0000066648145,0.9770331,0.00042344155,0.0151550695,0.00015218083],"about_ca_topic_score_codex":0.00005675458,"about_ca_topic_score_gemma":0.00023932311,"teacher_disagreement_score":0.015826425,"about_ca_system_score_codex":0.000011505582,"about_ca_system_score_gemma":0.00011243502,"threshold_uncertainty_score":0.48539305},"labels":[],"label_agreement":null},{"id":"W2068916552","doi":"10.1016/j.micres.2008.03.002","title":"Indicators from archaeal secretomes","year":2008,"lang":"en","type":"article","venue":"Microbiological Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Laurentian University","funders":"","keywords":"Archaea; Haloarchaea; Biology; Thermophile; Halophile; Bacteria; Signal peptide; Biochemistry; Sulfolobus; Amino acid; Genome; Peptide sequence; Genetics; Microbiology; Gene","score_opus":0.05905031694901001,"score_gpt":0.3261872494259621,"score_spread":0.2671369324769521,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068916552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972952,0.0008265311,0.00005908278,0.00048658488,0.00009790376,0.00016831966,0.000097385106,0.00002615874,0.0009428144],"genre_scores_gemma":[0.9959859,0.0011216694,0.00091775466,0.00017150605,0.0003462111,0.000021401846,0.00042205816,0.000014477626,0.0009990023],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983197,0.00022698678,0.00018703645,0.0005552117,0.00013754406,0.00057355454],"domain_scores_gemma":[0.9992889,0.000050651935,0.000032521668,0.00040864956,0.00008878653,0.0001304563],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036474114,0.00014289407,0.00017045152,0.00013374486,0.00023170914,0.000015351034,0.0005428317,0.0005877941,0.00028921725],"category_scores_gemma":[0.00023745833,0.00010710282,0.00008317094,0.00027921394,0.0010710947,0.0000011723214,0.0006913242,0.00041302716,0.00017515456],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009553621,0.00006298689,0.006289925,0.000001507639,0.000025239397,0.000019652913,0.00001901028,3.3869355e-7,0.9846496,0.00006922534,0.0058115153,0.0029554428],"study_design_scores_gemma":[0.00028422393,0.00057805394,0.024209838,0.0000036099304,0.0000016989775,0.000033119548,0.000024977255,0.000001157791,0.7080518,0.00026679705,0.26639065,0.00015408143],"about_ca_topic_score_codex":0.00006970665,"about_ca_topic_score_gemma":0.000023349536,"teacher_disagreement_score":0.27659783,"about_ca_system_score_codex":0.000017503919,"about_ca_system_score_gemma":0.00009978978,"threshold_uncertainty_score":0.45336065},"labels":[],"label_agreement":null},{"id":"W2069610748","doi":"10.1021/bi047882p","title":"Kinetic Analyses Reveal Multiple Steps in Forming TonB−FhuA Complexes from <i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Siderophore; Chemiosmosis; Biophysics; Escherichia coli; Biology; Cytoplasm; Crystallography; Biochemistry; Chemistry","score_opus":0.01911961387123782,"score_gpt":0.26956090133630645,"score_spread":0.2504412874650686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069610748","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968829,0.0014328519,0.000101140635,0.00047945016,0.0001078281,0.00014578052,0.00014614685,0.00003158353,0.00067227974],"genre_scores_gemma":[0.9916251,0.00014774175,0.0057002427,0.0003927167,0.0006889136,0.000025315252,0.00064556766,0.000031796288,0.00074264646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842405,0.000030222263,0.0003927249,0.0005825499,0.00015918753,0.00041123983],"domain_scores_gemma":[0.99912226,0.000019045929,0.00012469849,0.00054870854,0.00007759778,0.000107699845],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00010870455,0.00027654375,0.00027667737,0.00004283164,0.00006097091,0.00003915442,0.00039346353,0.00051563873,0.000052670708],"category_scores_gemma":[0.000120413264,0.00027994692,0.00011410672,0.00016258049,0.00013216693,0.000004225949,0.00023636423,0.00018889361,0.000016958527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008676389,0.00010370208,0.0034467545,0.000016028744,0.000039502414,0.000003837327,0.000017469689,0.00003071559,0.9920411,0.0000027482022,0.0018340576,0.00237732],"study_design_scores_gemma":[0.0008599598,0.00007744416,0.0045408374,0.000024354678,0.000021526574,0.0000047065473,0.00006861215,0.00018027195,0.9489075,0.0000211687,0.044959716,0.00033390365],"about_ca_topic_score_codex":0.00020376821,"about_ca_topic_score_gemma":0.00025483477,"teacher_disagreement_score":0.0431336,"about_ca_system_score_codex":0.000038681042,"about_ca_system_score_gemma":0.000076143915,"threshold_uncertainty_score":0.99996525},"labels":[],"label_agreement":null},{"id":"W2070512634","doi":"10.1093/nar/gkt883","title":"A highly sensitive in vivo footprinting technique for condition-dependent identification of cis elements","year":2013,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Austrian Science Fund","keywords":"Footprinting; Biology; DNA footprinting; Computational biology; Gene; In vivo; Trichoderma reesei; Transcription (linguistics); Psychological repression; Regulation of gene expression; Capillary electrophoresis; Promoter; Gene expression; Transcription factor; Molecular biology; Genetics; Biochemistry; Enzyme","score_opus":0.020733839222383164,"score_gpt":0.32193508971042323,"score_spread":0.3012012504880401,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070512634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99492544,0.000019658766,0.0029641713,0.00035322562,0.00005339306,0.0012439459,0.00004133845,0.000007468322,0.0003913694],"genre_scores_gemma":[0.9965909,0.00006672804,0.0023536782,0.000019267423,0.000069841306,0.00043371835,0.000042160536,0.000018920946,0.00040476932],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986913,0.00009654384,0.00036169225,0.00033568958,0.00019174902,0.00032300025],"domain_scores_gemma":[0.9990428,0.000026506908,0.000098509954,0.00031967982,0.00047205447,0.000040419298],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008822007,0.00009069436,0.0001289969,0.00018995728,0.000072553354,0.000029464192,0.00023459316,0.000278283,0.000029428698],"category_scores_gemma":[0.00020335354,0.00009128025,0.00004704015,0.00017664453,0.00016488553,0.0000046694286,0.00021761541,0.0001474199,0.000010041978],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004650876,0.000081487095,0.0009042573,0.00003083949,0.000018153485,5.843039e-7,0.000023257913,0.0000011656484,0.9957968,0.0004267071,0.0003587225,0.0023115287],"study_design_scores_gemma":[0.0004420751,0.00036602325,0.004295092,0.000016269463,0.0000026820883,0.000003093041,0.00016782306,0.0000622232,0.9914016,0.001104763,0.0020480289,0.00009032386],"about_ca_topic_score_codex":0.0000907768,"about_ca_topic_score_gemma":0.000028936358,"teacher_disagreement_score":0.0043951846,"about_ca_system_score_codex":0.0000325801,"about_ca_system_score_gemma":0.000055967714,"threshold_uncertainty_score":0.37223005},"labels":[],"label_agreement":null},{"id":"W2070678009","doi":"10.1021/bi034148h","title":"Kinetic Mechanism of the GCN5-Related Chromosomal Aminoglycoside Acetyltransferase AAC(6‘)-Ii from <i>Enterococcus faecium</i>:  Evidence of Dimer Subunit Cooperativity","year":2003,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Chemistry; Dimer; Cooperativity; Isothermal titration calorimetry; Stereochemistry; Product inhibition; Biophysics; Biochemistry; Crystallography; Enzyme; Biology; Organic chemistry; Non-competitive inhibition","score_opus":0.009528884915690733,"score_gpt":0.21636643756796137,"score_spread":0.20683755265227063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070678009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968336,0.0018966302,0.00018609906,0.00014742369,0.0002836843,0.00025365347,0.00016109338,0.000013558334,0.0002242584],"genre_scores_gemma":[0.9987077,0.00035736602,0.0003246825,0.00007983002,0.00006437205,0.000017893986,0.000065227454,0.000027851822,0.0003550645],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99836934,0.00011790126,0.000491972,0.00051920046,0.00020216712,0.00029945173],"domain_scores_gemma":[0.9985731,0.000027258871,0.0002197009,0.00093177636,0.00016512084,0.0000829899],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015058975,0.00029584634,0.00032878804,0.000023099685,0.00009879375,0.0000113665055,0.00055486785,0.0006050822,0.00013468441],"category_scores_gemma":[0.00021545611,0.00023647753,0.00020080709,0.00020455466,0.00038613728,0.0000043925106,0.00024966052,0.00021627522,0.0000027708518],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008535929,0.00016824994,0.0009840855,0.000053528645,0.00010002465,0.0000016695426,0.000031102103,0.0000064998726,0.9981851,0.00011905331,0.00012735226,0.00013796572],"study_design_scores_gemma":[0.0007045685,0.00032109866,0.00078220485,0.00013497341,0.00008005319,0.000019537003,0.000029477658,0.000013881452,0.99669826,0.00009140244,0.00087379524,0.00025071797],"about_ca_topic_score_codex":0.00008048041,"about_ca_topic_score_gemma":0.000025424326,"teacher_disagreement_score":0.0018741124,"about_ca_system_score_codex":0.000015788504,"about_ca_system_score_gemma":0.00017019355,"threshold_uncertainty_score":0.96432734},"labels":[],"label_agreement":null},{"id":"W2070745850","doi":"10.1111/j.1365-2958.2008.06303.x","title":"The PhoQ histidine kinases of <i>Salmonella</i> and <i>Pseudomonas</i> spp. are structurally and functionally different: evidence that pH and antimicrobial peptide sensing contribute to mammalian pathogenesis","year":2008,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Deutsche Forschungsgemeinschaft","keywords":"Periplasmic space; Biology; Biochemistry; Divalent; Peptide; Antimicrobial peptides; Mutant; Virulence; Peptide sequence; Histidine; Histidine kinase; Microbiology; Escherichia coli; Chemistry; Amino acid; Gene","score_opus":0.009693815734392937,"score_gpt":0.195666637954099,"score_spread":0.18597282221970607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070745850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9869643,0.010683528,0.0005134099,0.0011729229,0.00017880688,0.00029196378,0.00017637202,0.000011899904,0.0000068173713],"genre_scores_gemma":[0.9937646,0.004582096,0.000794943,0.0005924242,0.00006794504,0.000004562834,0.000083568026,0.000026701056,0.00008317837],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99853575,0.00013315037,0.00030546697,0.000597523,0.000056444354,0.0003716771],"domain_scores_gemma":[0.99914414,0.000053710828,0.00023457111,0.00032790613,0.00013409989,0.00010557109],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012252684,0.0003029938,0.00038314544,0.000055437333,0.00026289493,0.000029065804,0.00017252685,0.00032230504,0.000002450673],"category_scores_gemma":[0.00012940848,0.0002330834,0.00007364337,0.000072512,0.0007248573,0.0000042176416,0.00047435588,0.0001154055,8.781767e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000298676,0.000015783395,0.005372309,0.000034199522,0.000066080815,0.000035447847,0.000017221635,0.0000031407453,0.9923282,0.000019474852,0.00041771558,0.0013916987],"study_design_scores_gemma":[0.0005519488,0.00040117794,0.015519776,0.000053488668,0.00005302464,0.0013475067,0.000025447522,0.000002928302,0.97419506,0.000020589714,0.0075556124,0.0002734288],"about_ca_topic_score_codex":0.000034513025,"about_ca_topic_score_gemma":0.0000960738,"teacher_disagreement_score":0.018133182,"about_ca_system_score_codex":0.000011193778,"about_ca_system_score_gemma":0.000033237156,"threshold_uncertainty_score":0.9504865},"labels":[],"label_agreement":null},{"id":"W2071115263","doi":"10.1139/o01-235","title":"Bacterial lactoferrin receptors: insights from characterizing the <i>Moraxella bovis</i> receptors","year":2002,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Lactoferrin; Biology; Transferrin; Biochemistry; Peptide sequence; Mutant; Receptor; Amino acid; Binding protein; Gene; Bacterial outer membrane; Molecular biology; Escherichia coli","score_opus":0.008784995838961253,"score_gpt":0.19399905128485848,"score_spread":0.18521405544589722,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071115263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991227,0.004501454,0.000011580646,0.0007000719,0.001176685,0.00015581377,0.00008480319,0.000036138666,0.002106456],"genre_scores_gemma":[0.9911023,0.004384636,0.00018093853,0.00058836036,0.0016055747,0.000025791704,0.0007545137,0.000031128282,0.0013267646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983408,0.00011332241,0.00033793866,0.00074221956,0.00006754803,0.00039818994],"domain_scores_gemma":[0.99902177,0.000030791787,0.0001759932,0.00059408625,0.000047496054,0.00012989347],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008488674,0.00034686452,0.00027239,0.000027168424,0.00020402252,0.000061093364,0.0004348135,0.0008853242,0.00054286886],"category_scores_gemma":[0.000046893547,0.00025968306,0.000104354134,0.00009855312,0.0004181176,0.0000044076187,0.00034323084,0.0002533408,0.000049107402],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008769345,0.00006695562,0.00036802772,0.000011715149,0.00004311907,0.0000015880555,0.000049020684,8.027525e-8,0.9883906,0.00001530543,0.004929783,0.006036102],"study_design_scores_gemma":[0.00033975544,0.00015092101,0.000093437775,0.000006089344,0.000015780412,0.000006679675,0.000048335984,0.000005462053,0.59388566,0.00003525722,0.40519294,0.00021968492],"about_ca_topic_score_codex":0.000033267952,"about_ca_topic_score_gemma":0.000009738549,"teacher_disagreement_score":0.40026316,"about_ca_system_score_codex":0.000012860215,"about_ca_system_score_gemma":0.000024313456,"threshold_uncertainty_score":0.9999855},"labels":[],"label_agreement":null},{"id":"W2071520515","doi":"10.1128/jb.00136-09","title":"Conserved Network of Proteins Essential for Bacterial Viability","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council","keywords":"Biology; Nucleoid; Gene; Psychological repression; Genetics; Escherichia coli; Gene expression; Cell biology; Genome; Cell division; Regulation of gene expression; Cell","score_opus":0.008428775337951356,"score_gpt":0.2413057223622823,"score_spread":0.23287694702433093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071520515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995378,0.0001562804,0.002298215,0.00079786876,0.0009920478,0.00030612762,0.000032453674,0.000004081522,0.000034909226],"genre_scores_gemma":[0.9899037,0.000094037365,0.008115512,0.00015020446,0.0016538891,0.0000047365356,0.000043294884,0.000011250552,0.000023411827],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862427,0.00011726494,0.00071590947,0.00020082503,0.00006383289,0.00027790957],"domain_scores_gemma":[0.9985828,0.000025942874,0.0006766594,0.00026511034,0.0003785196,0.00007098421],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047896637,0.00015603036,0.00046806107,0.00004110421,0.000041272528,0.000011371288,0.00030280396,0.00044310794,0.00003899855],"category_scores_gemma":[0.00023317893,0.00013126752,0.0002509454,0.00006426368,0.0001855977,0.0000044862804,0.000060555412,0.00012450267,5.952884e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020511313,0.00012269561,0.00054335647,0.000016866197,0.00008218666,0.0000019469783,0.0000081059925,0.000017270364,0.9932664,0.00019018832,0.00062055356,0.0030792688],"study_design_scores_gemma":[0.0020144677,0.008348656,0.023048097,0.000022873981,0.00006257884,0.00016183614,0.0000092768,0.000009844988,0.91759175,0.0018804884,0.046654053,0.00019607402],"about_ca_topic_score_codex":0.000002969103,"about_ca_topic_score_gemma":0.000008984315,"teacher_disagreement_score":0.075674675,"about_ca_system_score_codex":0.0000121423045,"about_ca_system_score_gemma":0.00020136846,"threshold_uncertainty_score":0.5352934},"labels":[],"label_agreement":null},{"id":"W2072522551","doi":"10.1111/j.1574-6968.2002.tb11162.x","title":"Identification of in vivo essential genes from<i>Pseudomonas aeruginosa</i>by PCR-based signature-tagged mutagenesis","year":2002,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Mutant; Mutagenesis; Gene; Transposon mutagenesis; Transposable element; Biology; Pseudomonas aeruginosa; Genetics; Phenotype; Microbiology; Bacteria","score_opus":0.004582857243639388,"score_gpt":0.1886959634273834,"score_spread":0.18411310618374402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072522551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944406,0.0018692664,0.0007515142,0.0016721176,0.0004901206,0.00023620254,0.0005068771,0.000020922162,0.000012377789],"genre_scores_gemma":[0.9969477,0.0002656629,0.00045668503,0.001376905,0.00016063609,0.000025187825,0.00063553994,0.000029479546,0.00010218004],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99832195,0.00013980061,0.000502449,0.0006184212,0.00005270102,0.0003646804],"domain_scores_gemma":[0.9991377,0.000021854661,0.000263057,0.00048703057,0.00004742532,0.00004293569],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012765027,0.00025861146,0.0003100901,0.0001324285,0.000050227023,0.000015503643,0.0004146501,0.0006508586,0.00014570064],"category_scores_gemma":[0.000025966683,0.00026262293,0.00013158494,0.00016390342,0.00033792,0.0000037674806,0.00009763479,0.00015560295,0.000018343098],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000729388,0.00013706475,0.0017303615,0.000009861808,0.00006260205,0.0000055394084,0.000019752815,0.00007125783,0.98661685,0.0000021749204,0.010646454,0.0006251441],"study_design_scores_gemma":[0.0008988517,0.00010077792,0.0004939753,0.000009200792,0.000026865819,0.0000072479775,0.000010546367,0.000052889114,0.9819347,0.000004197344,0.016187113,0.00027362086],"about_ca_topic_score_codex":0.00009101729,"about_ca_topic_score_gemma":0.00007240403,"teacher_disagreement_score":0.005540659,"about_ca_system_score_codex":0.000019966095,"about_ca_system_score_gemma":0.000018465365,"threshold_uncertainty_score":0.9999826},"labels":[],"label_agreement":null},{"id":"W2072791216","doi":"10.1074/jbc.275.9.6490","title":"The Role of the Conserved Box E Residues in the Active Site of the Escherichia coli Type I Signal Peptidase","year":2000,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences","keywords":"Serine; Catalytic triad; Histidine; Signal peptide; Biochemistry; Integral membrane protein; Chemistry; Salt bridge; Active site; Stereochemistry; Residue (chemistry); Enzyme; Membrane protein; Membrane; Peptide sequence; Mutant","score_opus":0.008525312780974919,"score_gpt":0.2173795385575585,"score_spread":0.20885422577658358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072791216","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997058,0.0011846027,5.4331474e-7,0.00094283425,0.000047599293,0.000096833355,0.000021947722,0.0000012213949,0.00064644084],"genre_scores_gemma":[0.9988524,0.00067465386,0.00003967424,0.00015587451,0.00013910633,0.0000021545898,0.0000032853677,0.000004800037,0.00012808824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989962,0.0001864524,0.00038852595,0.00012450418,0.00013684056,0.00016745739],"domain_scores_gemma":[0.99904937,0.00007665614,0.0003822668,0.0003353503,0.00013009674,0.000026292895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037578677,0.00012054488,0.00018536608,0.0000054327566,0.00008963249,0.000012531874,0.000770636,0.0003198649,0.00006858186],"category_scores_gemma":[0.00019730072,0.000045140616,0.00019033824,0.0001572537,0.0005802123,0.0000018688191,0.00014077472,0.00035460657,5.9540275e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004955529,0.000079408936,0.0044333157,0.0000050533613,0.00003754048,0.0000011307079,0.000035385023,0.000009367861,0.99344265,0.00000843097,0.00016792459,0.0012842296],"study_design_scores_gemma":[0.00026689633,0.00026180828,0.033156093,0.00002198996,0.000016931874,0.00002980282,0.00026298926,0.0000037692655,0.95150816,0.00029748952,0.014112469,0.00006162444],"about_ca_topic_score_codex":0.0000132003315,"about_ca_topic_score_gemma":0.000015126768,"teacher_disagreement_score":0.041934524,"about_ca_system_score_codex":0.000009446758,"about_ca_system_score_gemma":0.000109725945,"threshold_uncertainty_score":0.24670911},"labels":[],"label_agreement":null},{"id":"W2073196925","doi":"10.1016/j.bpj.2008.12.2758","title":"Reconstitution Of Tonb-dependent Transporters In Planar Lipid Bilayers","year":2009,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Colicin; Lipid bilayer; Biophysics; Chemistry; Barrel (horology); Urea; Transmembrane protein; Ferrichrome; Biochemistry; Siderophore; Crystallography; Membrane; Escherichia coli; Biology; Materials science","score_opus":0.008364889040065994,"score_gpt":0.22630731543601823,"score_spread":0.21794242639595224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073196925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99811274,0.000033042892,0.00043570483,0.0008908282,0.00023043729,0.000055399185,0.0000113975075,0.0000036283723,0.00022683863],"genre_scores_gemma":[0.998909,0.00021990067,0.00031588934,0.00011902974,0.0003851496,6.748828e-7,0.000015465894,0.000004290522,0.00003061357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992966,0.000023409533,0.00024607306,0.00015215935,0.00011174719,0.00017001564],"domain_scores_gemma":[0.99967724,0.0000020619568,0.000091294365,0.000121852,0.00004621301,0.000061356855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011071344,0.00009408672,0.0001432861,0.0000645151,0.000026431551,0.000010614736,0.00014954337,0.00017792328,0.000007960281],"category_scores_gemma":[0.000012790176,0.00008049456,0.000089342546,0.000076686236,0.000080961785,0.0000030726767,0.000008064589,0.00015063219,0.0000021758985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014711148,0.00012154294,0.00028825027,0.0000022368986,0.000012569892,0.000010763401,0.000012248629,0.000029808558,0.98983675,0.00019318395,0.00012513997,0.009220371],"study_design_scores_gemma":[0.00058957835,0.0008463488,0.00576384,0.000016287815,0.00001005233,0.00006200215,0.00003852109,0.000014527024,0.98972756,0.00012891024,0.0026838712,0.00011853357],"about_ca_topic_score_codex":0.0000056463105,"about_ca_topic_score_gemma":0.000008623111,"teacher_disagreement_score":0.009101838,"about_ca_system_score_codex":0.000013095763,"about_ca_system_score_gemma":0.000052467312,"threshold_uncertainty_score":0.32824728},"labels":[],"label_agreement":null},{"id":"W2074044440","doi":"10.1021/bp060049u","title":"Regulating Expression of Pyruvate Kinase in <i>Bacillus subtilis</i> for Control of Growth Rate and Formation of Acidic Byproducts","year":2006,"lang":"en","type":"article","venue":"Biotechnology Progress","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"National Science Foundation","keywords":"Bacillus subtilis; Phosphoenolpyruvate carboxykinase; Mutant; Pyruvate kinase; Intracellular; Biochemistry; Enzyme; Intracellular pH; Chemistry; PEP group translocation; Acetate kinase; Growth rate; Wild type; Strain (injury); Acetic acid; Biology; Gene; Escherichia coli; Glycolysis; Bacteria; Genetics; Anatomy","score_opus":0.005453104927196923,"score_gpt":0.2090838260584642,"score_spread":0.2036307211312673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074044440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99591726,0.0018495199,0.0010870186,0.0004882357,0.000055090237,0.0005062752,0.00007385946,0.000015283695,0.0000074528525],"genre_scores_gemma":[0.9978802,0.000103495404,0.0018663828,0.000007034317,0.000025203235,0.000036515772,0.00006246441,0.000013351199,0.000005323402],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989296,0.00004115997,0.0004783819,0.0002848527,0.00005821761,0.00020776986],"domain_scores_gemma":[0.99909663,0.000012500945,0.00042785075,0.00029227504,0.0001555552,0.000015211025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026672333,0.00013853918,0.00030535262,0.00016526855,0.000024451734,0.0000029950213,0.00016989297,0.0006276827,4.9617864e-7],"category_scores_gemma":[0.0001051501,0.00012664746,0.00004803786,0.0001711261,0.00068773236,0.0000061162627,0.00009513575,0.00007115827,5.667527e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035736826,0.000089239446,0.0032754638,0.00021681645,0.000008944875,4.702606e-7,0.000010867665,0.00000955407,0.9913215,0.0008951557,0.0000129525715,0.0038016764],"study_design_scores_gemma":[0.0016351625,0.0005959055,0.0023909872,0.00006549303,0.000016486656,0.000002801709,0.000042379204,0.00014666609,0.9938784,0.00090989715,0.00020311345,0.000112690606],"about_ca_topic_score_codex":0.00001677685,"about_ca_topic_score_gemma":0.000023923272,"teacher_disagreement_score":0.003688986,"about_ca_system_score_codex":0.0000053431495,"about_ca_system_score_gemma":0.000024835486,"threshold_uncertainty_score":0.5164533},"labels":[],"label_agreement":null},{"id":"W2074228797","doi":"10.1016/j.bej.2008.05.017","title":"In vivo monitoring and alleviation of extracytoplasmic stress to recombinant protein overproduction in the periplasm of Escherichia coli","year":2008,"lang":"en","type":"article","venue":"Biochemical Engineering Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Department of Education of Guangdong Province","keywords":"Overproduction; Periplasmic space; Escherichia coli; Recombinant DNA; In vivo; Escherichia coli Proteins; Chemistry; Microbiology; Biochemistry; Biology; Biotechnology; Gene","score_opus":0.006514440941379999,"score_gpt":0.2059134244017404,"score_spread":0.1993989834603604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074228797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99912184,0.00030217905,0.00014474588,0.00014785856,0.00015267606,0.00012213299,0.0000026515904,0.000001720965,0.0000041782305],"genre_scores_gemma":[0.9970826,0.0003258877,0.0024300737,0.0000041419985,0.00012646243,0.000008012124,0.0000011611392,0.0000072446496,0.000014403645],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994175,0.000016829394,0.00024135274,0.00012392979,0.00007854637,0.00012183555],"domain_scores_gemma":[0.9997599,0.0000054459747,0.000068249064,0.000104900595,0.000032723903,0.00002875852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015236868,0.00008109903,0.0001174154,0.00007108392,0.000014819099,0.0000050976005,0.00010954617,0.00013101807,0.0000020498437],"category_scores_gemma":[0.00010212137,0.00006739221,0.00002535145,0.0001204793,0.000029736477,0.00000390464,0.000038895523,0.00014502276,7.7094015e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055796885,0.00005196178,0.0013760247,0.000024375271,0.0000059721146,0.000002699391,0.00008367202,0.00038197532,0.99786705,0.000012907724,0.000023094059,0.00011447724],"study_design_scores_gemma":[0.00028104358,0.00018238668,0.012854238,0.00006770692,0.0000022597667,0.00006314859,0.000032072337,0.00009498031,0.9858668,0.000005636981,0.00047809613,0.00007167384],"about_ca_topic_score_codex":0.00001223649,"about_ca_topic_score_gemma":0.0000013591116,"teacher_disagreement_score":0.012000287,"about_ca_system_score_codex":0.000014044492,"about_ca_system_score_gemma":0.000025064515,"threshold_uncertainty_score":0.27481747},"labels":[],"label_agreement":null},{"id":"W2074363799","doi":"10.1016/j.resmic.2008.06.009","title":"The Escherichia coli AIDA-I autotransporter undergoes cytoplasmic glycosylation independently of export","year":2008,"lang":"en","type":"article","venue":"Research in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Escherichia coli; Glycosylation; Signal peptide; Cytoplasm; Bacterial outer membrane; Peptide sequence; Biochemistry; Secretion; Translocon; Bacterial adhesin; Signal peptidase; Enterobacteriaceae; Membrane protein; Gene; Membrane","score_opus":0.0337922414074427,"score_gpt":0.2969106665330146,"score_spread":0.26311842512557193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074363799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785715,0.0007533839,0.00007103245,0.00052139006,0.00017501728,0.0002731955,0.000025476642,0.000007517315,0.00031584952],"genre_scores_gemma":[0.99637175,0.0027632588,0.00023537497,0.000041789488,0.000085235064,0.000026264705,0.00011597741,0.000016502114,0.00034384397],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840313,0.00026046447,0.00036650017,0.0003599265,0.00009713736,0.00051282294],"domain_scores_gemma":[0.9992354,0.00005811721,0.00008705519,0.00041838354,0.00015629198,0.000044758763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007782098,0.00012934954,0.00018521464,0.00012988549,0.00017245908,0.000008719282,0.00043372958,0.0004953201,0.000020718426],"category_scores_gemma":[0.00006181197,0.00009817211,0.00006513544,0.00025721954,0.00086535496,0.0000028781942,0.00018125724,0.0003548714,0.0000150642945],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021909164,0.00006451541,0.009863938,0.000009816164,0.000029615001,0.000011937428,0.000030903666,0.000010653434,0.98845387,0.00021741241,0.00044019942,0.0006480225],"study_design_scores_gemma":[0.0006527099,0.00059963507,0.02710903,0.000011091817,0.0000030397541,0.00008484099,0.00006002232,0.000013817728,0.9132426,0.00031237988,0.057771605,0.00013922558],"about_ca_topic_score_codex":0.00008465035,"about_ca_topic_score_gemma":0.00052104634,"teacher_disagreement_score":0.075211294,"about_ca_system_score_codex":0.00003059266,"about_ca_system_score_gemma":0.00027794778,"threshold_uncertainty_score":0.40033424},"labels":[],"label_agreement":null},{"id":"W2074864244","doi":"10.1042/bj20061168","title":"Functional characterization of the dimerization domain of the ferric uptake regulator (Fur) of <i>Pseudomonas aeruginosa</i>","year":2006,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Royal Society; Directorate for Biological Sciences; Biotechnology and Biological Sciences Research Council; Paul Scherrer Institut; University of East Anglia; Centre for Blood Research, University of British Columbia; Michael Smith Health Research BC","keywords":"Titration; Chemistry; Ferric; Potentiometric titration; Quenching (fluorescence); Metal ions in aqueous solution; Metal; Binding site; Crystallography; Thermal stability; Inorganic chemistry; Fluorescence; Ion; Biochemistry; Organic chemistry","score_opus":0.004623024458927832,"score_gpt":0.1800148430862829,"score_spread":0.17539181862735506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074864244","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99817634,0.0001679316,0.0005935247,0.0004519866,0.00039921596,0.000107307875,0.000045402634,0.0000023202622,0.000055945424],"genre_scores_gemma":[0.999146,0.000057714256,0.00025948387,0.00004773941,0.00032600338,0.0000019396102,0.000057623845,0.000010702349,0.00009281211],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990242,0.00005632239,0.0004461008,0.00013845022,0.00020714416,0.00012774723],"domain_scores_gemma":[0.9990085,0.000004745225,0.00050971634,0.0002801684,0.00017147703,0.0000254112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012524899,0.00010787427,0.00015036545,0.000028525677,0.000060222872,0.000006467934,0.00029175892,0.00024862078,0.000017487335],"category_scores_gemma":[0.00003828779,0.00006626495,0.0001767298,0.00019585338,0.00027393433,0.0000027846581,0.0001362054,0.00011660077,2.821493e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071733004,0.00008104358,0.0029630126,0.0000117195805,0.000023775323,7.943932e-8,0.000004378027,0.000008813119,0.9957969,0.00026925132,0.00048519022,0.00028406887],"study_design_scores_gemma":[0.00032164404,0.000058510956,0.10915615,0.000023932358,0.000021617752,0.00004553465,0.0000056391336,0.0000047779904,0.8874641,0.00027376713,0.002561321,0.0000630247],"about_ca_topic_score_codex":0.0000045268785,"about_ca_topic_score_gemma":0.0000012780685,"teacher_disagreement_score":0.10833285,"about_ca_system_score_codex":0.000010340878,"about_ca_system_score_gemma":0.000096462914,"threshold_uncertainty_score":0.2702206},"labels":[],"label_agreement":null},{"id":"W2075032996","doi":"10.1139/w00-094","title":"Use of lactose to induce expression of soluble NifA protein domains of<i>Herbaspirillum seropedicae</i>in<i>Escherichia coli</i>","year":2000,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Food and Agriculture; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"lac operon; Escherichia coli; Lactose; Biochemistry; Beta-galactosidase; Activator (genetics); Biology; Microbiology; Gene; Chemistry","score_opus":0.010972107608667325,"score_gpt":0.20556123743603488,"score_spread":0.19458912982736756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075032996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986199,0.0004700707,0.000026598053,0.00031720588,0.00017039017,0.00021062845,0.00011606087,0.0000010650174,0.00006804951],"genre_scores_gemma":[0.99694216,0.00012255507,0.0023964276,0.0002270304,0.00006960914,0.0000024985325,0.00001917764,0.000017282982,0.00020322748],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866027,0.00012197208,0.0006650793,0.00019256648,0.00004036471,0.0003197266],"domain_scores_gemma":[0.9989522,0.000010603422,0.0003480719,0.000285717,0.00018889076,0.00021453232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023292411,0.0001494313,0.00041858325,0.00018459927,0.000023362589,0.0000050788367,0.00035521385,0.00046987337,0.00014233703],"category_scores_gemma":[0.0000845407,0.00013468775,0.00010757953,0.00018448062,0.00027753107,0.0000058228934,0.000045573874,0.00018695129,0.0000024432584],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024109511,0.000052236057,0.0013991623,0.00002535838,0.000031434036,0.000011486111,0.00006497836,0.000050821207,0.9959172,0.000009626003,0.0011965341,0.001000074],"study_design_scores_gemma":[0.00051373144,0.0010656909,0.0013957651,0.0001008579,0.000011464081,0.00004870182,0.000027338041,3.978595e-7,0.8928366,0.000013439906,0.10387107,0.00011499613],"about_ca_topic_score_codex":0.001353552,"about_ca_topic_score_gemma":0.008025823,"teacher_disagreement_score":0.10308065,"about_ca_system_score_codex":0.000023005941,"about_ca_system_score_gemma":0.000727918,"threshold_uncertainty_score":0.5492407},"labels":[],"label_agreement":null},{"id":"W2075548007","doi":"10.3389/fmicb.2014.00631","title":"Structure-to-function relationships of bacterial translocator protein (TSPO): a focus on Pseudomonas","year":2014,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research; Région Normandie","keywords":"Translocator protein; Biology; Aryl hydrocarbon receptor nuclear translocator; In silico; Pseudomonas; Pseudomonas aeruginosa; Bacteria; Function (biology); Cell biology; Biochemistry; Computational biology; Genetics; Gene; Transcription factor; Aryl hydrocarbon receptor; Inflammation","score_opus":0.00502667654578837,"score_gpt":0.18872772607895502,"score_spread":0.18370104953316665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075548007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98650247,0.00009933539,0.011341855,0.0003789606,0.0010516745,0.00042172582,0.000100774065,0.000011886924,0.00009131732],"genre_scores_gemma":[0.98989415,0.000011013694,0.009398638,0.0001090815,0.0002187784,0.00002387666,0.00024794613,0.00002205403,0.000074455624],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987052,0.00022530636,0.0003252196,0.00043294264,0.00003261252,0.00027868312],"domain_scores_gemma":[0.99943364,0.000008406115,0.000105763225,0.00035832342,0.000043313754,0.000050579063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021291742,0.00018593723,0.00028366296,0.00018962486,0.000044426,0.0000065214463,0.00023954047,0.0006380103,0.000023982766],"category_scores_gemma":[0.000097212906,0.00017478554,0.00006533573,0.00015560309,0.00014554658,0.000001907839,0.0000571567,0.0002018898,0.000006033014],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000923977,0.00004902443,0.0011949484,0.000010432492,0.000032533466,3.4439765e-7,0.000025096748,0.000027175305,0.99167764,0.00046652128,0.00143656,0.004155756],"study_design_scores_gemma":[0.000935842,0.0015177191,0.0018571172,0.000017508144,0.00001264393,0.000008037115,0.000021095002,0.00000801488,0.95353234,0.0015125144,0.04037389,0.00020329832],"about_ca_topic_score_codex":0.000011151152,"about_ca_topic_score_gemma":0.00011297658,"teacher_disagreement_score":0.03893733,"about_ca_system_score_codex":0.000020452686,"about_ca_system_score_gemma":0.00004164038,"threshold_uncertainty_score":0.7127547},"labels":[],"label_agreement":null},{"id":"W2075606930","doi":"10.1128/jb.00967-09","title":"Protein Localization in <i>Escherichia coli</i> Cells: Comparison of the Cytoplasmic Membrane Proteins ProP, LacY, ProW, AqpZ, MscS, and MscL","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":138,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Australian Research Council; Medical Research Council","keywords":"Biology; Cytoplasm; Mechanosensitive channels; Escherichia coli; Membrane protein; Green fluorescent protein; Membrane transport protein; Cell biology; Lactose permease; Transport protein; Aquaporin; Complementation; Biochemistry; Molecular biology; Membrane; Ion channel; Gene; Mutant","score_opus":0.00768519526407583,"score_gpt":0.22695455970061923,"score_spread":0.2192693644365434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075606930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997517,0.00043879784,0.00023484131,0.0010222232,0.00021555054,0.000523106,0.000005956159,0.0000035516173,0.000039008708],"genre_scores_gemma":[0.99836725,0.00016982986,0.0010572656,0.00021020624,0.0001251016,0.0000072879593,0.000006199723,0.000012017484,0.00004486513],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986557,0.00018167101,0.0006545275,0.00020115763,0.0000951627,0.00021180217],"domain_scores_gemma":[0.9989825,0.000006726587,0.0006066224,0.00022706283,0.00013193086,0.00004517934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027954867,0.00016370654,0.00040301762,0.00007894077,0.000042424253,0.0000152203,0.00028644182,0.00033239467,0.0000051188017],"category_scores_gemma":[0.00007397235,0.000113673,0.00007832706,0.00015216475,0.0002099503,0.000006938455,0.000096724696,0.00027148516,5.492775e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036740987,0.00017938823,0.0028152727,0.000038289312,0.00002387004,0.0000025426555,0.00006171236,0.00005942114,0.99481624,0.000044855104,0.00007531827,0.0015156615],"study_design_scores_gemma":[0.0008622033,0.0018669752,0.011029873,0.00007323451,0.000019160812,0.000048764196,0.00003872006,0.00015163171,0.9773744,0.00010257617,0.008306034,0.00012645511],"about_ca_topic_score_codex":0.000011772961,"about_ca_topic_score_gemma":0.00006760197,"teacher_disagreement_score":0.017441887,"about_ca_system_score_codex":0.000017621653,"about_ca_system_score_gemma":0.00014863593,"threshold_uncertainty_score":0.46354502},"labels":[],"label_agreement":null},{"id":"W2076847722","doi":"10.1038/emboj.2008.97","title":"Structure of Escherichia coli tyrosine kinase Etk reveals a novel activation mechanism","year":2008,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Brookhaven National Laboratory; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Queen's University","keywords":"Queen (butterfly); Library science; Biology; Computer science; Ecology","score_opus":0.012581172233857508,"score_gpt":0.22639623379117718,"score_spread":0.21381506155731966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076847722","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963269,0.00015097817,0.0024934,0.00061598344,0.00023359487,0.000095019175,0.000021888854,0.0000046518303,0.000057582336],"genre_scores_gemma":[0.9965231,0.00029804828,0.0022939048,0.00027004306,0.00042614597,0.0000010967884,0.000014133354,0.000014363422,0.00015919276],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993334,0.000042346932,0.00021971646,0.00012538632,0.000113636146,0.0001655338],"domain_scores_gemma":[0.99936706,0.0000058465175,0.00022070589,0.0002385269,0.00012215851,0.00004569036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001246724,0.00011266103,0.00013589356,0.000032566455,0.0001576956,0.000012519722,0.00025355327,0.00018371335,0.000041496784],"category_scores_gemma":[0.000058961577,0.00007570859,0.00006791363,0.00009542283,0.000104914936,0.000002815411,0.00008702488,0.0002111786,0.0000011025626],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086635475,0.000035790654,0.00004874156,0.0000039655506,0.000040162588,0.0000017427523,0.000040191702,0.000016712629,0.9984528,0.00049956545,0.00050675235,0.0002669716],"study_design_scores_gemma":[0.0004696101,0.00028512467,0.0026784425,0.000011645512,0.000015567675,0.000297282,0.000027652095,0.00001474886,0.99231744,0.0012916584,0.0024965443,0.00009426343],"about_ca_topic_score_codex":0.0000071755767,"about_ca_topic_score_gemma":0.000003612668,"teacher_disagreement_score":0.0061353073,"about_ca_system_score_codex":0.0000094362695,"about_ca_system_score_gemma":0.00007516318,"threshold_uncertainty_score":0.30873066},"labels":[],"label_agreement":null},{"id":"W2076855729","doi":"10.1021/bi500244m","title":"Crystal Structures of the F and pSLT Plasmid TraJ N-Terminal Regions Reveal Similar Homodimeric PAS Folds with Functional Interchangeability","year":2014,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; Biological and Environmental Research; National Institutes of Health; U.S. Department of Energy","keywords":"Operon; Plasmid; PAS domain; Biology; Repressor; Genetics; Molecular biology; Gene; Escherichia coli; Transcription factor","score_opus":0.009898406387700944,"score_gpt":0.20198196010241973,"score_spread":0.19208355371471877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076855729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985506,0.00017872016,0.00030027315,0.0005236554,0.00010721564,0.000098149205,0.000056198325,0.000009323535,0.00017589866],"genre_scores_gemma":[0.99877954,0.000031719268,0.0005780293,0.00014029816,0.00023144127,0.000010857175,0.000055559438,0.000013666592,0.00015891474],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991411,0.000037623824,0.00016869616,0.00036230826,0.00011042015,0.00017987353],"domain_scores_gemma":[0.9992881,0.0000113346705,0.00011237881,0.00046191586,0.000066890876,0.000059383423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008627302,0.00017049788,0.00015189518,0.000015509375,0.00008039207,0.000012973385,0.0002055213,0.00030494135,0.000013199343],"category_scores_gemma":[0.00005692138,0.000117001866,0.00007210768,0.00007169189,0.00052705564,0.0000017557338,0.00018582147,0.0001278802,2.1469853e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014938715,0.000034131335,0.002157277,0.000064581756,0.000035199002,5.64352e-7,0.000012113855,0.0000029190983,0.9958236,0.000060434704,0.00072997215,0.00092977606],"study_design_scores_gemma":[0.00041568308,0.0003083211,0.013857342,0.000020231415,0.00003647535,0.00015709881,0.00004303766,0.000019085825,0.9797286,0.00021264814,0.005033232,0.0001682914],"about_ca_topic_score_codex":0.000009007752,"about_ca_topic_score_gemma":0.000020978216,"teacher_disagreement_score":0.01609509,"about_ca_system_score_codex":0.0000092870605,"about_ca_system_score_gemma":0.00006537596,"threshold_uncertainty_score":0.47711977},"labels":[],"label_agreement":null},{"id":"W2077067419","doi":"10.1016/j.str.2010.04.018","title":"Crystal Structures of Phd-Doc, HigA, and YeeU Establish Multiple Evolutionary Links between Microbial Growth-Regulating Toxin-Antitoxin Systems","year":2010,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Brookhaven National Laboratory; National Institutes of Health","keywords":"Antitoxin; Biology; Escherichia coli; Toxin; Shigella flexneri; Microbiology; Ribosome; Bacteria; Genetics; Gene; RNA","score_opus":0.0050263858227640075,"score_gpt":0.20186939735105086,"score_spread":0.19684301152828684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077067419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99727345,0.00044697497,0.00006979135,0.000112842885,0.001052391,0.00023476698,0.00074250763,0.00002212508,0.00004515722],"genre_scores_gemma":[0.99418217,0.000027774664,0.0038933116,0.00002743091,0.00141408,0.0000030455565,0.00037458257,0.000031169988,0.00004645062],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99873054,0.000043063024,0.00034213133,0.00045104488,0.00012774138,0.00030545887],"domain_scores_gemma":[0.9991609,0.000019034354,0.00020048114,0.00037699478,0.0001534922,0.000089111156],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000075225864,0.00024829083,0.0003001178,0.00007931773,0.00011691709,0.000049265862,0.00028017865,0.0012088965,0.000025508047],"category_scores_gemma":[0.000122017474,0.00022308121,0.000074453164,0.000103709026,0.0003107827,0.000007391385,0.00026845903,0.00048620655,3.7397686e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004139208,0.0000074976297,0.03133373,0.000062219566,0.00005867474,0.0000010234412,0.000024545403,0.000011603322,0.96682715,0.00028735824,0.00057298405,0.00077179243],"study_design_scores_gemma":[0.00072181935,0.00017737276,0.109843686,0.000016394395,0.000040362364,0.000074887575,0.00004706536,0.000042080173,0.8797142,0.00057230104,0.00844284,0.000307012],"about_ca_topic_score_codex":0.00012961388,"about_ca_topic_score_gemma":0.00014875755,"teacher_disagreement_score":0.08711301,"about_ca_system_score_codex":0.0000069102357,"about_ca_system_score_gemma":0.00006488344,"threshold_uncertainty_score":0.9324117},"labels":[],"label_agreement":null},{"id":"W2077106107","doi":"10.1016/j.virol.2011.09.027","title":"ParAB-mediated intermolecular association of plasmid P1 parS Sites","year":2011,"lang":"en","type":"article","venue":"Virology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of Toronto; University of Waterloo","funders":"Canadian Institutes of Health Research","keywords":"Plasmid; Biology; Escherichia coli; Chromosome segregation; Molecular biology; In vitro; DNA; Cell biology; Genetics; Chromosome; Gene","score_opus":0.009597007132711964,"score_gpt":0.19862810660688385,"score_spread":0.18903109947417188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077106107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981414,0.00023354514,0.00018009226,0.00015075563,0.00021072291,0.000093215196,0.000031464544,0.000016312679,0.000942479],"genre_scores_gemma":[0.99849236,0.00021020375,0.00059437926,0.00033981184,0.00006264633,0.000011448064,0.00013575502,0.000015564938,0.00013784073],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991019,0.000078733974,0.00024176686,0.0002650281,0.00006279265,0.00024979815],"domain_scores_gemma":[0.9994235,0.000013401746,0.00019045224,0.00027128847,0.000059235135,0.00004214177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014274081,0.00012505523,0.00019638817,0.000063324886,0.000023044555,0.0000032637515,0.00021023248,0.00057090766,0.00010213222],"category_scores_gemma":[0.0001392983,0.00012065595,0.000075879616,0.00007617076,0.00011436328,0.0000014377255,0.00013601693,0.00009663603,0.000031603286],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001279158,0.00007314119,0.009788802,0.000005332605,0.00009006091,0.000004743107,0.00004001397,8.8697396e-7,0.9885497,0.0001389121,0.0007489862,0.00043151423],"study_design_scores_gemma":[0.0005053638,0.0009421101,0.04064318,0.0000024442409,0.000028792872,0.000011355596,0.000011961359,0.00002176083,0.9334669,0.0002768917,0.023942119,0.00014708191],"about_ca_topic_score_codex":0.00001899158,"about_ca_topic_score_gemma":0.000051218765,"teacher_disagreement_score":0.055082753,"about_ca_system_score_codex":0.000009745828,"about_ca_system_score_gemma":0.00002805371,"threshold_uncertainty_score":0.49202067},"labels":[],"label_agreement":null},{"id":"W2077107387","doi":"10.1039/c4mb00561a","title":"Mathematical modeling of the <i>apo</i> and <i>holo</i> transcriptional regulation in <i>Escherichia coli</i>","year":2015,"lang":"en","type":"article","venue":"Molecular BioSystems","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Biotech (Canada); University of British Columbia","funders":"","keywords":"Escherichia coli; Escherichia coli Proteins; Computational biology; Chemistry; Biology; Biochemistry; Gene","score_opus":0.013974987152425924,"score_gpt":0.2147017694667125,"score_spread":0.20072678231428656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077107387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943203,0.0007897505,0.003321149,0.00040716425,0.00012667904,0.00027272414,0.000014745131,0.0000074220898,0.0007400925],"genre_scores_gemma":[0.9987959,0.000019069756,0.00088103925,0.00013537957,0.000037866346,0.000014476055,0.000018315955,0.000016883188,0.000081014776],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990264,0.00009500591,0.0003086766,0.00024729324,0.00016173843,0.00016084395],"domain_scores_gemma":[0.999482,0.000002823991,0.00007578662,0.0003096349,0.00007411121,0.000055679913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002885142,0.00012753575,0.00017185269,0.000034605022,0.00002318508,0.00001484722,0.00017518784,0.0002557793,0.0000031389616],"category_scores_gemma":[0.000039660164,0.000099389,0.000062701976,0.00014173053,0.00009399861,0.0000025830047,0.0000929212,0.000083319035,0.000002390724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004797111,0.000038553535,0.00015322033,0.00003180693,0.000013407122,9.246538e-7,0.00003159212,0.00055256084,0.9976327,0.0013879694,0.000048168047,0.00006116525],"study_design_scores_gemma":[0.0011232849,0.00025028444,0.00024840073,0.00007485213,0.000024153705,0.00003979227,0.00009073832,0.013155967,0.9774627,0.0015390384,0.0057585374,0.00023224893],"about_ca_topic_score_codex":0.000019985107,"about_ca_topic_score_gemma":0.000019643821,"teacher_disagreement_score":0.020169958,"about_ca_system_score_codex":0.000010912188,"about_ca_system_score_gemma":0.00006108808,"threshold_uncertainty_score":0.40529656},"labels":[],"label_agreement":null},{"id":"W2077445390","doi":"10.1111/j.1574-6968.2000.tb08874.x","title":"Isolation and characterization of<i>Francisella novicida</i>mutants defective in lipopolysaccharide biosynthesis","year":2000,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Mutant; Francisella; Transposable element; Biology; Gene; Lipopolysaccharide; Transposon mutagenesis; Biosynthesis; Microbiology; Molecular biology; Francisella tularensis; Genetics; Virulence","score_opus":0.003384673954924032,"score_gpt":0.1833855340071999,"score_spread":0.18000086005227586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077445390","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987959,0.00011124304,0.00015033185,0.0005326522,0.00012218782,0.00017574248,0.000074058364,0.000010012901,0.00002787024],"genre_scores_gemma":[0.99831253,0.00037352106,0.00028801398,0.00072463823,0.000077450255,0.000008432255,0.00017670142,0.000015646658,0.000023043494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909043,0.00007006192,0.00024793757,0.00035093294,0.00002004624,0.0002206038],"domain_scores_gemma":[0.9996597,0.000010148071,0.00009365646,0.00018956732,0.00002173193,0.00002516447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000101298625,0.00015058271,0.000202673,0.0000981183,0.00003293142,0.0000074194863,0.000113349735,0.00031631076,0.000059999627],"category_scores_gemma":[0.0000131340885,0.00014870186,0.000043331933,0.00009103934,0.0001864663,0.0000039920633,0.000043728753,0.000084604166,0.000009507047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013791004,0.00003052251,0.007454285,0.0000065176832,0.000026392727,0.0000014864312,0.00004159935,0.0000035456937,0.98185676,0.000005443183,0.00001808034,0.010417477],"study_design_scores_gemma":[0.00040973083,0.00013006495,0.02746895,0.000013573219,0.000011487409,0.000033787164,0.0000075105963,0.000015962021,0.96900517,0.000006847784,0.0027349854,0.00016194514],"about_ca_topic_score_codex":0.00003687611,"about_ca_topic_score_gemma":0.000048680016,"teacher_disagreement_score":0.020014664,"about_ca_system_score_codex":0.000009999444,"about_ca_system_score_gemma":0.000014373096,"threshold_uncertainty_score":0.60638857},"labels":[],"label_agreement":null},{"id":"W2077546260","doi":"10.1093/emboj/19.13.3179","title":"The bacterial cell‐division protein ZipA and its interaction with an FtsZ fragment revealed by X‐ray crystallography","year":2000,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":277,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"Zhejiang Pharmaceutical Association","keywords":"FtsZ; Biology; Fragment (logic); Cell division; Division (mathematics); Genetics; Biophysics; Cell biology; Cell","score_opus":0.004016006499467977,"score_gpt":0.20603550232230525,"score_spread":0.20201949582283726,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077546260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976747,0.0007226882,0.00007941711,0.00090384873,0.00015514609,0.00025287978,0.0000104027795,0.000007292768,0.00019361074],"genre_scores_gemma":[0.9972224,0.0015018221,0.00017501893,0.00009704797,0.00035397062,0.000012907323,0.00002176751,0.000017025806,0.00059803406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990852,0.00016134388,0.00019898092,0.00019912624,0.00011955512,0.00023581373],"domain_scores_gemma":[0.9994917,0.000007414796,0.000126713,0.00023673798,0.000055277298,0.000082157625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033081806,0.00014813048,0.000101903395,0.000021900452,0.00044002864,0.00016788901,0.00026322834,0.0001274428,0.00010591306],"category_scores_gemma":[0.0000076095985,0.00007533752,0.000045686855,0.00005907929,0.0001036556,0.000008535329,0.000055428307,0.00025349465,0.0000031103812],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061194546,0.00005038806,0.000033818884,0.0000029090065,0.00003486149,0.0000018165975,0.000031080523,0.0000084598605,0.98672956,0.0000061183055,0.0005465996,0.011942421],"study_design_scores_gemma":[0.0015067803,0.0038398844,0.0017389491,0.00004499403,0.000045680747,0.0002921303,0.00018029903,0.000063690684,0.6206392,0.00023488955,0.3710961,0.00031737218],"about_ca_topic_score_codex":0.000005363966,"about_ca_topic_score_gemma":0.000014851856,"teacher_disagreement_score":0.37054953,"about_ca_system_score_codex":0.000007872519,"about_ca_system_score_gemma":0.00002904836,"threshold_uncertainty_score":0.3384389},"labels":[],"label_agreement":null},{"id":"W2077609152","doi":"10.3791/1225","title":"Identification of protein complexes with quantitative proteomics in S. cerevisiae","year":2009,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Endoplasmic reticulum; Proteomics; Compartmentalization (fire protection); Organelle; Cell biology; Membrane protein; Biology; Membrane contact site; Biochemistry; Cell signaling; Gel electrophoresis; Chemistry; Proteome; Cellular compartment; Signal transduction; Cell; Membrane; Enzyme; Integral membrane protein; Gene","score_opus":0.020426133341995643,"score_gpt":0.3847028062611519,"score_spread":0.3642766729191562,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077609152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968295,0.00066269404,0.0020464975,0.000112311005,0.000036580856,0.0002755532,0.000003869627,0.0000018081181,0.000031172003],"genre_scores_gemma":[0.98939663,0.000098022334,0.010393689,0.00002966402,0.000034916204,0.0000053032204,0.000006109299,0.000007997461,0.000027656633],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990454,0.00006243901,0.0005232102,0.00012375295,0.00013107307,0.00011416233],"domain_scores_gemma":[0.99909854,0.0000025347879,0.00057228183,0.00013744843,0.00015750193,0.00003171637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021054054,0.00010043109,0.00022957222,0.0001047528,0.000016375852,0.0000136870385,0.00016817078,0.000107455984,0.000005171205],"category_scores_gemma":[0.00003855928,0.0000784024,0.000052061456,0.000110708555,0.00006362514,0.0000064533947,0.000022291399,0.000073707444,5.886666e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090847036,0.00026366414,0.00021673595,0.000008803456,0.000034132492,0.0000027562057,0.00010316485,0.000008700969,0.99750257,0.00043833425,0.000019338833,0.00049331924],"study_design_scores_gemma":[0.0014267592,0.002584644,0.0026984632,0.000066018445,0.000007582677,0.000015275853,0.00014984059,0.000014977082,0.99235255,0.00016946971,0.00042631695,0.00008812623],"about_ca_topic_score_codex":0.000003535178,"about_ca_topic_score_gemma":0.0000019102215,"teacher_disagreement_score":0.008347192,"about_ca_system_score_codex":0.000014898555,"about_ca_system_score_gemma":0.00005746585,"threshold_uncertainty_score":0.3197157},"labels":[],"label_agreement":null},{"id":"W2077643325","doi":"10.1016/j.mib.2013.09.005","title":"Peptidoglycan hydrolases, bacterial shape, and pathogenesis","year":2013,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Peptidoglycan; Biology; Microbiology; Bacteria; Phenotype; Cell wall; Genetics; Gene","score_opus":0.03984233349306717,"score_gpt":0.3133341232318669,"score_spread":0.27349178973879973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077643325","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0073522017,0.9854193,0.0000046360715,0.000023409786,0.005846421,0.0008117638,0.000512567,0.000018011888,0.000011734459],"genre_scores_gemma":[0.000065951484,0.99227816,0.00014867396,0.000012085293,0.0014218698,0.00020360426,0.005753086,0.00006436274,0.000052188985],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997375,0.00029729985,0.0007391801,0.0010224299,0.000033852088,0.0005322422],"domain_scores_gemma":[0.99896616,0.000024112012,0.0003397806,0.0005237827,0.00004628112,0.00009988546],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00016813536,0.00060111325,0.0011762416,0.00024858033,0.00005445693,0.000042056647,0.00045829703,0.0014624078,0.00012389093],"category_scores_gemma":[0.000048224407,0.00051693915,0.00024352597,0.00015951273,0.00028224813,0.0000028672384,0.0006544211,0.00038190486,0.00007189258],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001595765,0.00007666465,0.000019694071,0.00271664,0.000056918783,5.912819e-7,0.000004200075,5.6028195e-8,0.09934107,0.00002102255,0.0038932615,0.8938539],"study_design_scores_gemma":[0.00037174608,0.00024725744,0.000012879498,0.0012969242,0.000053733827,0.00018143716,0.0000026422824,0.0000010257947,0.00039152702,0.0000088120605,0.99688596,0.0005460472],"about_ca_topic_score_codex":0.000009200228,"about_ca_topic_score_gemma":0.000009903705,"teacher_disagreement_score":0.9929927,"about_ca_system_score_codex":0.000034220226,"about_ca_system_score_gemma":0.00019759577,"threshold_uncertainty_score":0.9998339},"labels":[],"label_agreement":null},{"id":"W2077667720","doi":"10.4161/rna.7.2.11056","title":"Small RNA-mediated regulation at the level of transcript stability","year":2010,"lang":"en","type":"review","venue":"RNA Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Biology; Gene silencing; RNA; Translation (biology); Genetics; Gene; RNA interference; Regulation of gene expression; RNA silencing; Computational biology; Gene expression; Post-transcriptional regulation; Trans-acting siRNA; Small RNA; Messenger RNA","score_opus":0.09938149520280515,"score_gpt":0.29502554994095603,"score_spread":0.19564405473815089,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077667720","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.027615666,0.96879286,0.00015250834,0.00016308608,0.0009299044,0.0007324856,0.0012937655,0.000016770879,0.00030292725],"genre_scores_gemma":[0.006997651,0.9889504,0.0002288018,0.000050393282,0.0003399239,0.000056351095,0.002875271,0.00004355737,0.00045767633],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979333,0.00031571792,0.0007005634,0.0006333407,0.000060868602,0.00035616057],"domain_scores_gemma":[0.9982382,0.000064860025,0.00050084083,0.0010176285,0.00011820304,0.000060275266],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00042821717,0.0003908171,0.0009395093,0.0000689224,0.00008213677,0.000007871177,0.00063545164,0.0024688796,0.0001510719],"category_scores_gemma":[0.00016839248,0.00024678034,0.00044274572,0.00015402399,0.0006588676,8.3468456e-7,0.00028938186,0.00042718253,0.000022660384],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002502373,0.000031140473,0.0000060138004,0.00039192234,0.00008685218,2.6283456e-7,0.0000049559358,4.3712124e-8,0.62479997,0.00008372994,0.00013974588,0.37443033],"study_design_scores_gemma":[0.00017914598,0.00026550906,0.000042696967,0.00008989766,0.00016214777,0.000018791809,0.000002504598,5.745647e-7,0.10965878,0.00006614167,0.8892747,0.00023907403],"about_ca_topic_score_codex":0.00003978493,"about_ca_topic_score_gemma":0.0005325215,"teacher_disagreement_score":0.889135,"about_ca_system_score_codex":0.000026887985,"about_ca_system_score_gemma":0.00022281146,"threshold_uncertainty_score":0.99999845},"labels":[],"label_agreement":null},{"id":"W2077851143","doi":"10.1016/j.sbi.2004.06.003","title":"The structural basis of substrate translocation by the Escherichia coli glycerol-3-phosphate transporter: a member of the major facilitator superfamily","year":2004,"lang":"en","type":"review","venue":"Current Opinion in Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; National Institute on Drug Abuse; National Institutes of Health; New York State Department of Health","keywords":"Major facilitator superfamily; Transporter; SUPERFAMILY; Escherichia coli; Biochemistry; Transport protein; Protein superfamily; Biology; Binding site; Cytoplasm; Membrane transport protein; Chemistry; Biophysics; Gene","score_opus":0.03004264399359356,"score_gpt":0.3159896608757603,"score_spread":0.2859470168821667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077851143","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20155872,0.79265195,0.0000094086545,0.00014689355,0.0035254245,0.0009554811,0.0011424297,0.0000062304225,0.000003429961],"genre_scores_gemma":[0.1685345,0.83025336,0.00002584083,0.00000818211,0.00014653665,0.00008707641,0.00090734975,0.000026944515,0.000010193648],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972138,0.00039875857,0.001210583,0.00058286596,0.00014690176,0.00044713292],"domain_scores_gemma":[0.99830836,0.00006318921,0.0006740231,0.0007893678,0.000115620205,0.0000494633],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025508556,0.0005275343,0.0009271072,0.00004899944,0.00016504133,0.00001885349,0.0012122362,0.0008184942,0.000016734006],"category_scores_gemma":[0.00004050615,0.0002504459,0.00054125127,0.00035554098,0.0011742949,0.0000049130763,0.00013186102,0.000528966,9.494127e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000328844,0.00004441283,0.00053140783,0.005910776,0.0005780723,1.571796e-7,0.00019764184,0.000011887208,0.06841008,0.0017409149,0.00022401781,0.9220218],"study_design_scores_gemma":[0.0016146549,0.00058202917,0.0021676365,0.0020064896,0.00032067785,0.000032007018,0.00010051626,0.0000124832995,0.0357153,0.00078304065,0.9558703,0.00079490733],"about_ca_topic_score_codex":0.00012345004,"about_ca_topic_score_gemma":0.00008707048,"teacher_disagreement_score":0.9556462,"about_ca_system_score_codex":0.000042789427,"about_ca_system_score_gemma":0.0003573624,"threshold_uncertainty_score":0.99999475},"labels":[],"label_agreement":null},{"id":"W2078150902","doi":"10.1016/s1389-0344(00)00061-7","title":"A broad-host-range expression vector series including a Ptac test plasmid and its application in the expression of the dod gene of Serratia marcescens (coding for ribulose-5-phosphate 3-epimerase) in Pseudomonas stutzeri","year":2000,"lang":"en","type":"review","venue":"Biomolecular Engineering","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Deutsche Forschungsgemeinschaft; Petroleum Technology Alliance Canada","keywords":"Serratia marcescens; Plasmid; Biology; Multiple cloning site; Pseudomonas stutzeri; Expression vector; Gene; Shuttle vector; Bacteria; Transformation (genetics); Microbiology; Vector (molecular biology); Recombinant DNA; Genetics; Escherichia coli","score_opus":0.016229018307571945,"score_gpt":0.2602198068638725,"score_spread":0.24399078855630058,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078150902","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19076818,0.8057577,0.0009410492,0.00004309158,0.00013107194,0.0020986625,0.00024099315,0.000013838248,0.0000054046222],"genre_scores_gemma":[0.37840483,0.6199556,0.0010142938,0.000011431338,0.00007879557,0.00035550745,0.00011122649,0.000062005434,0.000006304493],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984423,0.00008211282,0.0005982491,0.00045493926,0.00013938916,0.00028299342],"domain_scores_gemma":[0.9991181,0.000044429577,0.000293578,0.00047140758,0.000039391343,0.00003310659],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002489724,0.00036080496,0.00062198285,0.00013996716,0.00005252735,0.00001836347,0.00046623114,0.00052144815,0.0000013513215],"category_scores_gemma":[0.000103636754,0.0002494334,0.00018033248,0.00033456928,0.00005590611,0.0000075220264,0.0002728716,0.00018978317,2.4331158e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034175322,0.00005431062,0.000028673036,0.0020513353,0.000021631542,0.0000020149917,0.00006191798,0.000032560412,0.9917202,0.000022760505,0.000005847838,0.005964575],"study_design_scores_gemma":[0.00041878616,0.00014455791,0.00015741515,0.002887311,0.00007430266,0.000028672588,0.000012111566,0.00017071402,0.9350647,0.0000039250035,0.0607386,0.000298948],"about_ca_topic_score_codex":0.000013767543,"about_ca_topic_score_gemma":0.000014386964,"teacher_disagreement_score":0.18763663,"about_ca_system_score_codex":0.000024819139,"about_ca_system_score_gemma":0.000052496744,"threshold_uncertainty_score":0.99999577},"labels":[],"label_agreement":null},{"id":"W2078171342","doi":"10.1021/bi011425g","title":"A Combinatorial Approach toward Analyzing Functional Elements of the <i>Escherichia coli</i> Hemolysin Signal Sequence","year":2002,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Hemolysin; Sequence (biology); Signal peptide; Biology; Function (biology); Peptide sequence; Escherichia coli; Transporter; Computational biology; Genetics; Gene; Virulence","score_opus":0.019614216551259927,"score_gpt":0.21387667034986182,"score_spread":0.1942624537986019,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078171342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971967,0.00047316044,0.0003328837,0.00018396752,0.00030460165,0.00012690152,0.00005251003,0.000012747419,0.001316565],"genre_scores_gemma":[0.99811417,0.000052926873,0.00091512,0.0001246511,0.00035654142,0.000016521753,0.00008386919,0.000016178124,0.00032001905],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988712,0.000034315846,0.00028803156,0.00037544445,0.00018618719,0.0002448361],"domain_scores_gemma":[0.99924034,0.0000045528905,0.00017680522,0.0004286423,0.00009067167,0.000058973204],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010949792,0.00018040255,0.00016208079,0.000016371743,0.0000828472,0.00001839386,0.00039037687,0.00034232333,0.00008027723],"category_scores_gemma":[0.000038596972,0.00014843325,0.00014521116,0.0001960062,0.00022496018,0.0000020563507,0.00023137311,0.00015239169,0.0000032509176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003908607,0.00014492252,0.0010089346,0.000043095046,0.000056581477,6.006717e-7,0.000007270469,0.00000827471,0.9968968,0.000048588954,0.0013093422,0.0004364785],"study_design_scores_gemma":[0.00056040176,0.00007782896,0.00027889974,0.000008197258,0.000030693955,0.00001288867,0.000023889617,0.000309383,0.99410725,0.000054612017,0.0043587624,0.00017721661],"about_ca_topic_score_codex":0.0000070274596,"about_ca_topic_score_gemma":4.0497744e-7,"teacher_disagreement_score":0.0030494202,"about_ca_system_score_codex":0.000021765154,"about_ca_system_score_gemma":0.00006206283,"threshold_uncertainty_score":0.6052932},"labels":[],"label_agreement":null},{"id":"W2078356003","doi":"10.1074/jbc.m110.149179","title":"Decoding Toxicity","year":2010,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Peptide sequence; Amino acid; Escherichia coli; Peptide; Genetics; Antitoxin; Function (biology); Mutant; Biochemistry; Computational biology; Gene; Toxin","score_opus":0.013513279429412894,"score_gpt":0.24606541313324565,"score_spread":0.23255213370383276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078356003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981832,0.00015141518,0.00015048786,0.00025064446,0.0003150245,0.000024107216,0.000005371906,0.000005770344,0.0009139703],"genre_scores_gemma":[0.9958473,0.00019135182,0.0027345927,0.00012852365,0.0009950168,7.822234e-7,0.000008043829,0.000006298278,0.00008809879],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993056,0.0000134749225,0.0002849366,0.00015072415,0.00007153468,0.00017373299],"domain_scores_gemma":[0.99939066,0.00001113783,0.00020702541,0.00017861344,0.00011176503,0.00010077891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023737912,0.00010995006,0.00016356456,0.000013737554,0.0000373752,0.000016454602,0.0003204511,0.0005273204,0.0001595002],"category_scores_gemma":[0.00031937324,0.000076827004,0.00013622642,0.00004831485,0.00014275417,0.0000015935593,0.00011549968,0.00035531115,0.0000029650612],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000063091415,0.000053583535,0.0021635105,0.0000040920977,0.00002025349,0.000007561364,0.0000014992152,6.8694925e-7,0.9943016,0.000015370926,0.00041075243,0.0029579871],"study_design_scores_gemma":[0.00023735291,0.00022382416,0.0015269155,0.0000035587736,0.000005795571,0.0003209427,0.000010972586,0.0000024233384,0.9525007,0.00017619721,0.0448885,0.00010280362],"about_ca_topic_score_codex":3.8124807e-7,"about_ca_topic_score_gemma":0.0000011164511,"teacher_disagreement_score":0.044477746,"about_ca_system_score_codex":0.000004670086,"about_ca_system_score_gemma":0.000045403005,"threshold_uncertainty_score":0.40671775},"labels":[],"label_agreement":null},{"id":"W2078508016","doi":"10.1128/jb.187.4.1227-1237.2005","title":"Identification and Characterization of a Novel Allele of <i>Escherichia coli dnaB</i> Helicase That Compromises the Stability of Plasmid P1","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"dnaB helicase; Biology; Plasmid; Escherichia coli; Genetics; DnaA; DNA replication; Molecular biology; DNA; Gene; Helicase; Origin of replication","score_opus":0.016046388091092944,"score_gpt":0.234762792504503,"score_spread":0.21871640441341006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078508016","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998069,0.00020241592,0.0007276198,0.0006407391,0.00012193505,0.00014321097,0.00008501126,0.0000014933225,0.000008558256],"genre_scores_gemma":[0.99818397,0.00084600254,0.00073845405,0.00006992045,0.000105197156,0.0000026396763,0.000036735746,0.000008368079,0.000008736904],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891794,0.00009004247,0.00066434673,0.00013889204,0.00007877366,0.00010998606],"domain_scores_gemma":[0.9983031,0.000025180078,0.0011468665,0.00024083014,0.00024962513,0.000034371034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037675747,0.000106323234,0.0003347006,0.00005097072,0.000025734147,0.0000061765427,0.00021281083,0.00021906313,0.000016222932],"category_scores_gemma":[0.00006969147,0.00007723648,0.000086457694,0.0000656582,0.00036878083,0.000008825628,0.000100711506,0.00010163599,1.5832447e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041927502,0.00020175277,0.0022046005,0.000042745312,0.00007149464,1.9713943e-7,0.000070739414,0.0000045670877,0.99558765,0.000036501722,0.000016591199,0.0013438711],"study_design_scores_gemma":[0.0006722647,0.00064686895,0.061703052,0.000014487511,0.000036342983,0.000043813205,0.00005084429,0.000052319807,0.9324988,0.000009237645,0.004209272,0.00006270742],"about_ca_topic_score_codex":0.000006960425,"about_ca_topic_score_gemma":0.00001413619,"teacher_disagreement_score":0.06308887,"about_ca_system_score_codex":0.000007240452,"about_ca_system_score_gemma":0.00007343889,"threshold_uncertainty_score":0.31496122},"labels":[],"label_agreement":null},{"id":"W2078517395","doi":"10.1038/nature04149","title":"Structures of ParB bound to DNA reveal mechanism of partition complex formation","year":2005,"lang":"en","type":"article","venue":"Nature","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":118,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"DNA; Partition (number theory); Linker; Coiled coil; Biophysics; Biology; Chemistry; Stereochemistry; Genetics; Computer science; Mathematics; Combinatorics","score_opus":0.008086363727109825,"score_gpt":0.24965854209491872,"score_spread":0.2415721783678089,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078517395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99821925,0.000145252,0.00045007077,0.00070332264,0.00009813074,0.00012020955,0.000057780137,0.000005406459,0.00020060445],"genre_scores_gemma":[0.996212,0.000029301245,0.003010925,0.00040103952,0.00016104663,0.0000030906026,0.0001448641,0.0000061884502,0.000031549982],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995187,0.000015535228,0.00016409528,0.00012194358,0.00007828468,0.00010146019],"domain_scores_gemma":[0.9996144,0.0000017462618,0.00009146424,0.00017962899,0.00008620248,0.00002655172],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005740823,0.00007231181,0.00010454481,0.000037414222,0.000020629403,0.000005606782,0.00011533936,0.0008074014,0.000022744274],"category_scores_gemma":[0.000024352057,0.00006440996,0.000040074636,0.000062374274,0.000029746046,0.0000027722372,0.000056364872,0.00015998466,0.0000014386886],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053851505,0.000014366877,0.0000147889305,0.000016935332,0.000011235547,1.0488066e-7,0.000021885127,0.000015384008,0.99229044,0.0029059919,0.0018409182,0.002814119],"study_design_scores_gemma":[0.0002012666,0.00022501257,0.0024378037,0.000005966412,0.000008279024,0.0000057614307,0.00001643178,0.000020180356,0.9722313,0.001248363,0.02353162,0.00006799586],"about_ca_topic_score_codex":0.000002620248,"about_ca_topic_score_gemma":0.0000282069,"teacher_disagreement_score":0.0216907,"about_ca_system_score_codex":0.000006112586,"about_ca_system_score_gemma":0.000014804199,"threshold_uncertainty_score":0.6227419},"labels":[],"label_agreement":null},{"id":"W2078611261","doi":"10.1038/nature05267","title":"Wza the translocon for E. coli capsular polysaccharides defines a new class of membrane protein","year":2006,"lang":"en","type":"article","venue":"Nature","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":376,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Wellcome Trust","keywords":"Periplasmic space; Bacterial outer membrane; Bacterial capsule; Transmembrane protein; Bacteria; Cell biology; Translocon; Chemistry; Secretion; Integral membrane protein; Extracellular; Cell wall; Escherichia coli; Biology; Biophysics; Biochemistry; Membrane; Membrane protein; Gene; Genetics","score_opus":0.005102515968830872,"score_gpt":0.2184132573703583,"score_spread":0.21331074140152742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078611261","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903723,0.003730139,0.0002745314,0.0045943675,0.00015312429,0.000628828,0.00008352463,0.0000122280635,0.00015096649],"genre_scores_gemma":[0.9968169,0.000062363884,0.0012139456,0.00032602248,0.00043383776,0.000037535032,0.00008264421,0.000017778124,0.0010090264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993336,0.000017087517,0.0001679184,0.00022025747,0.00007616948,0.00018493514],"domain_scores_gemma":[0.9995347,0.0000067968517,0.00007968979,0.00027434094,0.00008004034,0.000024431287],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00008669205,0.00012782421,0.00014282277,0.000026092943,0.000048943835,0.000013079232,0.0002470285,0.0013559181,0.00000863024],"category_scores_gemma":[0.000034871984,0.00008753731,0.0001107477,0.00008715536,0.00008524479,0.000001233483,0.00003260006,0.00029135842,6.701856e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117271426,0.000027819644,0.000025047444,0.000027785458,0.000026817885,4.25895e-7,0.0000054879506,0.000006491988,0.9931547,0.0025372112,0.0029719695,0.0010989852],"study_design_scores_gemma":[0.00046839827,0.00017573764,0.00026284624,0.000008769147,0.000021219254,0.000005469571,0.0000071076806,0.000009814792,0.8240333,0.0008772842,0.17403655,0.000093504415],"about_ca_topic_score_codex":0.00010603324,"about_ca_topic_score_gemma":0.0002060248,"teacher_disagreement_score":0.17106457,"about_ca_system_score_codex":0.0000037294456,"about_ca_system_score_gemma":0.000080968006,"threshold_uncertainty_score":0.9999405},"labels":[],"label_agreement":null},{"id":"W2078704504","doi":"10.1046/j.1365-2958.2000.01836.x","title":"Localization of the histidine kinase PilS to the poles of <i>Pseudomonas aeruginosa</i> and identification of a localization domain","year":2000,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary General Hospital; University of Calgary","funders":"University of Calgary","keywords":"Biology; Histidine kinase; Transmembrane domain; Transmembrane protein; Subcellular localization; Green fluorescent protein; Linker; PAS domain; Cell biology; Histidine; Response regulator; Fusion protein; Biochemistry; Two-component regulatory system; Pseudomonas aeruginosa; Protein kinase domain; Cytoplasm; Membrane; Gene; Transcription factor; Genetics; Amino acid; Bacteria; Mutant","score_opus":0.0028859198496507628,"score_gpt":0.1917115332380797,"score_spread":0.18882561338842896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078704504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97877944,0.0009618185,0.019130379,0.0006025067,0.0000796902,0.00031351508,0.00009582495,0.0000034782145,0.000033350996],"genre_scores_gemma":[0.99903405,0.0002042695,0.00025411684,0.00030446725,0.000020107409,0.000008611415,0.00011295975,0.000011424372,0.000049994323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990633,0.00014334459,0.00038360496,0.00023610773,0.00004358827,0.00013004472],"domain_scores_gemma":[0.999224,0.0000066098764,0.00019936945,0.00043526417,0.00011404478,0.000020680656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017278251,0.00011381299,0.00017158773,0.000042037485,0.000045432116,0.0000041082844,0.0002600453,0.00020975091,0.00001296913],"category_scores_gemma":[0.000043173328,0.0000784558,0.00006433959,0.00019998936,0.00036521818,0.0000013915701,0.00012097954,0.00004406457,0.000001212534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007375158,0.000047059493,0.00035481653,0.000024676634,0.000028833296,2.6752096e-7,0.00006081888,0.00067631935,0.9957164,0.00037508187,0.00020200269,0.0024399564],"study_design_scores_gemma":[0.00025270117,0.0001950877,0.00034057046,0.00001548086,0.000026584614,0.000017975393,0.000023947532,0.000042014042,0.9694688,0.00013253847,0.029406343,0.00007796098],"about_ca_topic_score_codex":0.0000402659,"about_ca_topic_score_gemma":0.000038696213,"teacher_disagreement_score":0.02920434,"about_ca_system_score_codex":0.0000061766764,"about_ca_system_score_gemma":0.000031664764,"threshold_uncertainty_score":0.31993347},"labels":[],"label_agreement":null},{"id":"W2078736829","doi":"10.1073/pnas.2535211100","title":"Structural and functional characterization of the VirB5 protein from the type IV secretion system encoded by the conjugative plasmid pKM101","year":2003,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; European Commission; Argonne National Laboratory; Wellcome Trust","keywords":"Secretion; Helix bundle; Pilus; Mutagenesis; Bacterial conjugation; Plasmid; Biology; Protein structure; Cell biology; Biochemistry; Mutation; Escherichia coli; DNA","score_opus":0.015361522924996407,"score_gpt":0.22668694178270962,"score_spread":0.21132541885771322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078736829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974627,0.00009353145,0.0000027084684,0.0018650853,0.000054783894,0.00026341592,0.000078799276,0.0000021571761,0.00017684903],"genre_scores_gemma":[0.99965835,0.000024211562,0.000064427,0.00012423832,0.000059306556,0.000008289565,0.0000034743916,0.0000026646148,0.000055037275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922156,0.000026044325,0.00018899217,0.0001639569,0.00032354592,0.00007586892],"domain_scores_gemma":[0.9993674,0.000023956749,0.00037567856,0.000017610319,0.00020529087,0.000010062823],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004219284,0.000073438525,0.000078129175,0.000014365943,0.00021114993,0.000016709517,0.0003574499,0.00012514737,0.0000051562793],"category_scores_gemma":[0.00019115208,0.000032272408,0.000033867916,0.0002181061,0.00088734616,0.000012123274,0.00008723166,0.00009611983,1.3516251e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026732869,0.0000047441395,0.0013570492,0.000009210023,0.000015776339,3.0279015e-10,0.000045383124,0.000004069939,0.9889003,0.009514358,0.00007403278,0.000048361762],"study_design_scores_gemma":[0.00012262577,0.000061581086,0.03920228,0.000029612123,0.000010380818,0.0000039260017,0.00016410758,0.00030186094,0.9574897,0.0020288161,0.00054282974,0.00004226841],"about_ca_topic_score_codex":0.000006249276,"about_ca_topic_score_gemma":2.8580098e-7,"teacher_disagreement_score":0.03784523,"about_ca_system_score_codex":0.000008746963,"about_ca_system_score_gemma":0.00003418636,"threshold_uncertainty_score":0.32694638},"labels":[],"label_agreement":null},{"id":"W2078743442","doi":"10.1073/pnas.1413657111","title":"Switching modes of chromosome dynamics in the bacterial cell cycle","year":2014,"lang":"en","type":"letter","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Dynamics (music); Biology; Chromosome; Genetics; Cell biology; Computational biology; Physics; Gene","score_opus":0.016502166415469498,"score_gpt":0.2541792878881817,"score_spread":0.23767712147271222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078743442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93555903,0.00007178771,0.0000010217419,0.06242741,0.00004202121,0.00016471888,0.000048809947,0.0000020160703,0.0016831808],"genre_scores_gemma":[0.98714143,0.00009013824,0.0003628569,0.01170841,0.0006386073,0.000007014636,0.0000057403,0.0000072865214,0.000038524504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986379,0.000016354605,0.00036962933,0.00027910172,0.00052735227,0.00016964303],"domain_scores_gemma":[0.99918735,0.00003345216,0.0006204179,0.000023206108,0.00012723726,0.000008359195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008113516,0.00013715787,0.00021271265,0.00011151253,0.00006369085,0.00001920732,0.0015387924,0.00065506867,0.0000031999598],"category_scores_gemma":[0.00010263448,0.00008249473,0.00010294751,0.0002467695,0.0005914379,0.000007670531,0.00019651886,0.00041485482,2.3915493e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010303369,0.000020592923,0.00016282598,0.000106012674,0.000008951889,8.685364e-9,0.000022132836,0.000019213072,0.99303734,0.00080552575,0.005723491,0.00008362719],"study_design_scores_gemma":[0.00018290397,0.00015250061,0.0009016216,0.00007669889,0.00001689407,0.000010234978,0.000056158104,0.0005988832,0.979892,0.007390349,0.010581792,0.00013994411],"about_ca_topic_score_codex":0.0000108881895,"about_ca_topic_score_gemma":4.7122248e-7,"teacher_disagreement_score":0.05158239,"about_ca_system_score_codex":0.000017122502,"about_ca_system_score_gemma":0.000039205177,"threshold_uncertainty_score":0.50524896},"labels":[],"label_agreement":null},{"id":"W2079368671","doi":"10.1016/j.micpath.2003.08.003","title":"RpoS and RpoN are involved in the growth-dependent regulation of rfaH transcription and O antigen expression in Salmonella enterica serovar typhi","year":2003,"lang":"en","type":"article","venue":"Microbial Pathogenesis","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"rpoN; rpoS; Biology; Sigma factor; Salmonella typhi; Salmonella enterica; Mutant; Microbiology; Salmonella; Promoter; Transcription (linguistics); Gene; Gene expression; Bacteria; Genetics; Escherichia coli","score_opus":0.008851609938523016,"score_gpt":0.19625280865297054,"score_spread":0.18740119871444752,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079368671","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845946,0.0009821051,0.000115643736,0.00009736769,0.00006549112,0.00023507621,0.000024368606,0.00000325545,0.000017204537],"genre_scores_gemma":[0.99796003,0.001296379,0.00058956584,0.000060318984,0.000026844586,0.00000922762,0.000034972578,0.0000112421585,0.000011395071],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991335,0.000170421,0.000223754,0.0002776863,0.00005367859,0.00014092083],"domain_scores_gemma":[0.999691,0.000005396607,0.00008800438,0.0001672219,0.000028525696,0.000019837908],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023707152,0.000120755925,0.00014832155,0.00007423739,0.00003273577,0.000013458157,0.000087953835,0.0002421926,0.000003591445],"category_scores_gemma":[0.00002091644,0.00009992224,0.000029091569,0.00010328913,0.000067409535,0.000003869607,0.00003749071,0.000054658274,3.2473253e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000096899654,0.00005459123,0.017572518,0.000029278715,0.0000045101906,0.000002170178,0.00010986969,0.0000045400543,0.9813543,0.000012446066,0.00001914222,0.0007397326],"study_design_scores_gemma":[0.0005279962,0.000100378325,0.14306292,0.000028600694,0.000006986259,0.000012559456,0.0001280982,0.000005737174,0.85525817,0.00005370824,0.00071596686,0.00009885494],"about_ca_topic_score_codex":0.000039207756,"about_ca_topic_score_gemma":0.00023654173,"teacher_disagreement_score":0.12609611,"about_ca_system_score_codex":0.000008947048,"about_ca_system_score_gemma":0.000015682075,"threshold_uncertainty_score":0.40747106},"labels":[],"label_agreement":null},{"id":"W2079370617","doi":"10.1016/j.pep.2007.09.002","title":"Recombinant expression of twelve evolutionarily diverse subfamily Iα aminotransferases","year":2007,"lang":"en","type":"article","venue":"Protein Expression and Purification","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institutes of Health; Alberta Agricultural Research Institute","keywords":"Subfamily; Biology; Heterologous expression; Escherichia coli; Saccharomyces cerevisiae; Genetics; Biochemistry; Enzyme; Recombinant DNA; Genome; Yeast; Computational biology; Gene","score_opus":0.012108474522218386,"score_gpt":0.23664638854421688,"score_spread":0.2245379140219985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079370617","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99078786,0.0010572919,0.0072403564,0.00011291612,0.00014220223,0.00039775044,0.000017173477,0.000018045492,0.0002263986],"genre_scores_gemma":[0.9947282,0.0005188999,0.0042288234,0.000026911444,0.00008423632,0.000028459574,0.000112616195,0.000012344191,0.0002595167],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903315,0.00004978588,0.0002823446,0.00033020775,0.00012209605,0.00018243695],"domain_scores_gemma":[0.9993886,0.00000933496,0.00013009121,0.00030022563,0.00010054524,0.000071200164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027330863,0.00013194009,0.00012529113,0.00007085025,0.00010315713,0.000010999128,0.00013758898,0.0003046315,0.000020553887],"category_scores_gemma":[0.000052403102,0.00011198106,0.00004645512,0.00007833773,0.000122066405,0.000006758646,0.00007883323,0.000083776926,0.0000027543213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002517056,0.00010100274,0.0008393656,0.000029413517,0.00000431276,6.099183e-7,0.000040126786,9.4956505e-7,0.9875085,0.00028911,0.00021911545,0.010715834],"study_design_scores_gemma":[0.00046880412,0.000244057,0.013318063,0.00006620459,0.000006590989,0.000003744761,0.000101254256,0.000006330337,0.97076696,0.00026047896,0.014617061,0.00014043717],"about_ca_topic_score_codex":0.000019198947,"about_ca_topic_score_gemma":0.0000062545087,"teacher_disagreement_score":0.01674148,"about_ca_system_score_codex":0.0000074496825,"about_ca_system_score_gemma":0.000024778963,"threshold_uncertainty_score":0.45664552},"labels":[],"label_agreement":null},{"id":"W2079388780","doi":"10.1038/nchembio.590","title":"Antibiotics as probes of biological complexity","year":2011,"lang":"en","type":"review","venue":"Nature Chemical Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Antibiotics; Biology; Biogenesis; Computational biology; Bacterial cell structure; Genetics; Bacteria; Gene","score_opus":0.05186617708019575,"score_gpt":0.332671986192589,"score_spread":0.2808058091123932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079388780","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0066021397,0.99094653,0.0000117904665,0.000025629812,0.00049798575,0.0004866405,0.00037551098,0.000032814834,0.0010209561],"genre_scores_gemma":[0.010717585,0.9844675,0.001671488,0.000109776694,0.00051209907,0.0000070731794,0.002415225,0.000046929646,0.000052288196],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976284,0.00016085569,0.0007208002,0.00093697663,0.000062279425,0.0004907014],"domain_scores_gemma":[0.99845773,0.000039295413,0.00048565282,0.00076148944,0.0001397127,0.00011614694],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00016751538,0.00058479613,0.0016747848,0.00010686675,0.000032444503,0.000007309963,0.001044112,0.008367556,0.00009047493],"category_scores_gemma":[0.00035680798,0.0004075669,0.00060994853,0.0002133563,0.0012214521,9.416684e-7,0.00081966404,0.001132532,0.000037103422],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011858776,0.00034878784,0.000042955948,0.0023997268,0.0005217174,0.0000052529144,0.000004487671,4.8477764e-9,0.47185433,0.014007926,0.00092249457,0.50977373],"study_design_scores_gemma":[0.00014986102,0.00049296796,0.0000022859654,0.00028571102,0.00012440601,0.000085730084,0.000001343063,5.5014983e-8,0.19172476,0.00116142,0.8055921,0.00037932565],"about_ca_topic_score_codex":0.0000074820755,"about_ca_topic_score_gemma":0.0000022006666,"teacher_disagreement_score":0.8046696,"about_ca_system_score_codex":0.000017658072,"about_ca_system_score_gemma":0.00018989437,"threshold_uncertainty_score":0.99983764},"labels":[],"label_agreement":null},{"id":"W2079479634","doi":"10.1016/j.peptides.2006.08.023","title":"A peptide inhibitor of MurA UDP-N-acetylglucosamine enolpyruvyl transferase: The first committed step in peptidoglycan biosynthesis","year":2006,"lang":"en","type":"article","venue":"Peptides","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Biopanning; Mura; Peptide; Biochemistry; Enzyme; Transferase; Phage display; Biology; Peptidomimetic; IC50; Chemistry; Molecular biology; Peptide library; Peptide sequence; In vitro; Gene","score_opus":0.0056268374226355845,"score_gpt":0.1988620874460998,"score_spread":0.1932352500234642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079479634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99597543,0.0006941407,0.000087813816,0.0019555183,0.00014158887,0.00033726337,0.00009844835,0.000023940236,0.0006858636],"genre_scores_gemma":[0.9979562,0.00029586084,0.00076278346,0.0001571098,0.00034565726,0.000045360706,0.00010558707,0.000037145637,0.00029428457],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984579,0.00006758426,0.0005085494,0.00041198914,0.00015443265,0.0003995315],"domain_scores_gemma":[0.9991263,0.00004492183,0.00012852524,0.0005791521,0.00007858982,0.00004250744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023911185,0.00027727647,0.00032050718,0.000112078764,0.00010120884,0.000029571202,0.00044470775,0.00032708546,0.000037194608],"category_scores_gemma":[0.00005564989,0.00021368396,0.00015695143,0.00028614307,0.00036913206,0.000004469538,0.00013237719,0.00016902751,0.000007910247],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014684357,0.00019465988,0.0063876235,0.000042112875,0.000037514408,0.000004474509,0.00004869844,0.00003252076,0.9874681,0.00016979579,0.0027842445,0.0026833657],"study_design_scores_gemma":[0.0008325936,0.0003686256,0.030363863,0.000053264146,0.000027467231,0.000012001486,0.00017301062,0.000050401915,0.8693043,0.00006655407,0.09845904,0.00028887],"about_ca_topic_score_codex":0.0008881486,"about_ca_topic_score_gemma":0.007653762,"teacher_disagreement_score":0.11816385,"about_ca_system_score_codex":0.000021448246,"about_ca_system_score_gemma":0.00005263466,"threshold_uncertainty_score":0.8713779},"labels":[],"label_agreement":null},{"id":"W2079622119","doi":"10.1016/j.chembiol.2013.12.011","title":"Synthesis of L-2,3-Diaminopropionic Acid, a Siderophore and Antibiotic Precursor","year":2014,"lang":"en","type":"article","venue":"Chemistry & Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of British Columbia","funders":"SLAC National Accelerator Laboratory; National Institute of General Medical Sciences; Canadian Institutes of Health Research; Biological and Environmental Research; Office of Science","keywords":"Siderophore; NAD+ kinase; Tricarboxylic acid; Citric acid cycle; Biosynthesis; Biochemistry; Serine; Biology; Metabolite; Stereochemistry; Amino acid; Hydrolysis; Gene cluster; Enzyme; Chemistry; Gene","score_opus":0.004864455810809261,"score_gpt":0.20718902032516523,"score_spread":0.20232456451435596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079622119","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970799,0.0012744919,0.00011547687,0.00018780536,0.000093771196,0.00008753443,0.000031676052,0.000016067073,0.0011132476],"genre_scores_gemma":[0.9981602,0.0006236377,0.00071769406,0.00005593321,0.0001919567,0.000009488189,0.00006385879,0.000018606323,0.00015864521],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989465,0.000044682743,0.00024327451,0.00045624105,0.000039129056,0.00027019822],"domain_scores_gemma":[0.9992727,0.000023503546,0.00013452538,0.000435858,0.000061382474,0.00007202532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001255101,0.0001902473,0.0002819875,0.00002348983,0.000042197687,0.000008210927,0.00022992575,0.0005787106,0.000030623793],"category_scores_gemma":[0.00029341478,0.00016794595,0.00006911322,0.000063606756,0.00045572268,0.0000011853622,0.00021072509,0.00009809718,0.00000494027],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042816657,0.00003830245,0.001882873,0.00008548194,0.000041852483,4.362189e-7,0.0000048070156,2.9287605e-7,0.9799752,0.000078801946,0.00008245562,0.017766662],"study_design_scores_gemma":[0.00025546146,0.00025031294,0.001231221,0.0000188652,0.000027675498,0.000035965222,0.000015076674,0.00001892258,0.9852564,0.00019933993,0.012504229,0.00018656354],"about_ca_topic_score_codex":0.0000068941504,"about_ca_topic_score_gemma":0.000003640828,"teacher_disagreement_score":0.017580098,"about_ca_system_score_codex":0.000005506459,"about_ca_system_score_gemma":0.00003818068,"threshold_uncertainty_score":0.68486375},"labels":[],"label_agreement":null},{"id":"W2080044096","doi":"10.1016/j.jmb.2007.07.022","title":"High-resolution Structure of the Major Periplasmic Domain from the Cell Shape-determining Filament MreC","year":2007,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Periplasmic space; Cell biology; Cytoskeleton; Biology; Protein structure; Protein filament; Biochemistry; Cell","score_opus":0.0038889477988796597,"score_gpt":0.21496386597304082,"score_spread":0.21107491817416116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080044096","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99355996,0.0013463765,0.0033730688,0.00067673076,0.0008274593,0.00012315014,0.000066433866,0.0000023333273,0.00002450808],"genre_scores_gemma":[0.9936222,0.00008611008,0.005407506,0.00047515097,0.0003539703,6.4893754e-7,0.00002538206,0.000016221687,0.000012830787],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987429,0.00016508743,0.0005082461,0.00020117984,0.00012237232,0.00026024398],"domain_scores_gemma":[0.9988152,0.000031671985,0.0006002888,0.0003847472,0.000120769204,0.0000473312],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032246154,0.00016866713,0.00023976556,0.000044913813,0.000078228804,0.000011360367,0.0006232738,0.00043793433,0.0000357654],"category_scores_gemma":[0.00007102618,0.00009553352,0.00020417335,0.000096877244,0.00025604054,0.00000192157,0.0002470461,0.0002803613,8.168264e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015941542,0.000029096485,0.0010717036,0.000003639019,0.000092613736,0.000006675724,0.000036654503,0.000029682005,0.99643725,0.000124931,0.00016629502,0.0018420352],"study_design_scores_gemma":[0.00071364845,0.0006254763,0.007350704,0.00001615445,0.000056397697,0.00007962891,0.00008708832,0.00000720689,0.98276716,0.0010773715,0.0071077095,0.00011146984],"about_ca_topic_score_codex":0.000029294171,"about_ca_topic_score_gemma":0.00006520673,"teacher_disagreement_score":0.013670114,"about_ca_system_score_codex":0.000021543336,"about_ca_system_score_gemma":0.00009115084,"threshold_uncertainty_score":0.38957438},"labels":[],"label_agreement":null},{"id":"W2080700347","doi":"10.1128/aac.01802-09","title":"The BceABRS Four-Component System Regulates the Bacitracin-Induced Cell Envelope Stress Response in <i>Streptococcus mutans</i>","year":2010,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Operon; Bacitracin; Biology; Bacillus subtilis; Streptococcus mutans; Regulon; Two-component regulatory system; Gene; Lipid II; Genetics; Histidine kinase; Response regulator; Levansucrase; Microbiology; Regulation of gene expression; Escherichia coli; Bacteria; Peptidoglycan; Antibiotics","score_opus":0.0059656534095563025,"score_gpt":0.20732590354922167,"score_spread":0.20136025013966538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080700347","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945626,0.00006281663,0.000008152956,0.004260361,0.00050575804,0.00044280896,0.000030128085,0.000017879058,0.000109479275],"genre_scores_gemma":[0.9974076,0.0009186832,0.000087066124,0.0010731119,0.00016767147,0.000019346138,0.000022157816,0.00003218006,0.00027214998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987113,0.00011009002,0.0003003761,0.000410114,0.00009155815,0.00037656145],"domain_scores_gemma":[0.99918234,0.00003248859,0.00012843587,0.0005412541,0.000055605564,0.0000598578],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039104297,0.00024453388,0.00018174465,0.00003397936,0.00029229908,0.000118810945,0.00043955803,0.0003479575,0.00001125146],"category_scores_gemma":[0.000014433648,0.00014941186,0.00007594803,0.00012156051,0.00021424778,0.0000038266567,0.00012882175,0.00027147727,0.0000053391104],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058944715,0.00006086452,0.0018930004,0.00001451222,0.000031139432,0.000006138561,0.00007826974,0.0000024028534,0.992289,0.000022048142,0.0014144417,0.0035987298],"study_design_scores_gemma":[0.0009080695,0.00014478782,0.030432947,0.000019378836,0.000008490849,0.000022687673,0.000105837426,0.00002487095,0.86472446,0.000007147392,0.10340033,0.00020098872],"about_ca_topic_score_codex":0.000051768195,"about_ca_topic_score_gemma":0.00016134228,"teacher_disagreement_score":0.12756453,"about_ca_system_score_codex":0.000010240551,"about_ca_system_score_gemma":0.00005580159,"threshold_uncertainty_score":0.6092839},"labels":[],"label_agreement":null},{"id":"W2080785176","doi":"10.1107/s0907444907005045","title":"Crystallographic analysis of<i>Bacillus subtilis</i>CsaA","year":2007,"lang":"en","type":"article","venue":"Acta Crystallographica Section D Biological Crystallography","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Bacillus subtilis; Thermus thermophilus; Eubacterium; Chaperone (clinical); Biology; Chemistry; Computational biology; Crystallography; Biochemistry; Genetics; Escherichia coli; Gene; Bacteria","score_opus":0.011642898191230815,"score_gpt":0.231864241553354,"score_spread":0.22022134336212318,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080785176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898585,0.0008029015,0.0063273637,0.00015106192,0.00057887007,0.0005501195,0.00017894269,0.00019831458,0.0013539235],"genre_scores_gemma":[0.99520546,0.0017656647,0.0013162744,0.00036132048,0.0003183409,0.000039373568,0.00090592646,0.000051050716,0.000036583544],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99547625,0.00023972105,0.0012872204,0.0014146002,0.00045214064,0.001130069],"domain_scores_gemma":[0.99724287,0.0001214681,0.0006366504,0.0011660362,0.00046037286,0.00037259],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0014883763,0.00069195713,0.000989928,0.0029612025,0.0002862014,0.000059382553,0.0008842681,0.0017229234,0.00015298203],"category_scores_gemma":[0.00019198349,0.0005914862,0.0018288159,0.0075405813,0.001584101,0.00001757495,0.00040985594,0.00050658087,2.9488342e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006410999,0.00041247153,0.097329244,0.000018425822,0.0024808552,0.000011226609,0.000023235265,0.00003145231,0.89775264,0.00022165598,0.00021562837,0.0008620375],"study_design_scores_gemma":[0.001503827,0.0041787196,0.5889634,0.000019291152,0.0012911838,0.00007091181,0.00040245196,0.00003230536,0.025328971,0.00073852274,0.37598956,0.0014808706],"about_ca_topic_score_codex":0.000080661455,"about_ca_topic_score_gemma":0.0007596512,"teacher_disagreement_score":0.8724237,"about_ca_system_score_codex":0.000019251322,"about_ca_system_score_gemma":0.000050963117,"threshold_uncertainty_score":0.99965364},"labels":[],"label_agreement":null},{"id":"W2081160864","doi":"10.1099/mic.0.062349-0","title":"Transcriptional regulation of the Rhodobacter capsulatus response regulator CtrA","year":2012,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Rhodobacter; Biology; Response regulator; Mutant; Gene expression; Quorum sensing; Gene; Regulation of gene expression; Cell biology; Virulence; Biochemistry","score_opus":0.007100735130307143,"score_gpt":0.20299814673459707,"score_spread":0.19589741160428992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081160864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976197,0.000615436,0.00010090174,0.00064868067,0.00070729875,0.00014456357,0.000081119084,0.0000082404895,0.00007408665],"genre_scores_gemma":[0.9981373,0.00002195163,0.0005397278,0.00021685594,0.00023329761,0.000006288037,0.00010661838,0.000014088474,0.00072385464],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905807,0.00020140685,0.00022837437,0.00019398096,0.00003193277,0.00028621868],"domain_scores_gemma":[0.9993916,0.00001075035,0.000105606036,0.00039638625,0.000057725512,0.000037938895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029097093,0.00012550103,0.00013644322,0.00003630343,0.000057527686,0.000003854889,0.00021645265,0.00043267765,0.00008243077],"category_scores_gemma":[0.000044907225,0.000090933645,0.000117159245,0.00008450304,0.0002703467,0.00000263342,0.00009456356,0.00008845165,0.000009576359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038055636,0.000047542148,0.0026807922,0.000004674964,0.000031004558,4.8975906e-8,0.000032014694,0.0000031236416,0.99521565,0.0004516327,0.00081225263,0.00034069174],"study_design_scores_gemma":[0.00024198675,0.00009425538,0.15801464,0.0000035117653,0.000011748843,0.0000556178,0.0000065135982,6.943526e-7,0.69351286,0.00003212335,0.14794354,0.00008249206],"about_ca_topic_score_codex":0.0000053255367,"about_ca_topic_score_gemma":0.00000879533,"teacher_disagreement_score":0.3017028,"about_ca_system_score_codex":0.000013573812,"about_ca_system_score_gemma":0.00004888931,"threshold_uncertainty_score":0.37081662},"labels":[],"label_agreement":null},{"id":"W2081196173","doi":"10.1099/mic.0.074286-0","title":"Characterization of LgnR, an IclR family transcriptional regulator involved in the regulation of l-gluconate catabolic genes in Paracoccus sp. 43P","year":2013,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Institute for Catastrophic Loss Reduction","keywords":"Operon; Biology; Promoter; Genetics; Gene; Transcriptional regulation; Regulon; Gene cluster; Repressor; Gammaproteobacteria; Regulation of gene expression; Transcription factor; Gene expression; Escherichia coli","score_opus":0.009453795527679032,"score_gpt":0.20636807626691275,"score_spread":0.19691428073923373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081196173","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986697,0.00044515045,0.00005500562,0.00025407114,0.00012335108,0.0003420163,0.00009488288,0.000004110928,0.000011698669],"genre_scores_gemma":[0.9977074,0.00027043835,0.00022047263,0.00016737213,0.00006495562,0.000033142944,0.0015051386,0.000010790095,0.00002026409],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889815,0.00017143358,0.00042543677,0.0002734431,0.00003441501,0.00019709945],"domain_scores_gemma":[0.9994128,0.0000071255345,0.00016533882,0.00030815048,0.00008855115,0.000018069155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020347405,0.00013180161,0.00022152066,0.00012004251,0.000017965793,0.000006401442,0.00026326947,0.00038986074,0.000024146113],"category_scores_gemma":[0.000010505703,0.000106043575,0.000047576454,0.00016231695,0.00020289038,0.000008172715,0.00004054817,0.000081483486,0.0000028550967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006879365,0.000109514964,0.00705774,0.000014654029,0.000010512204,2.169299e-7,0.000094784686,0.000011407861,0.9904053,0.00024639533,0.000015378533,0.0019652746],"study_design_scores_gemma":[0.0003788574,0.00015269232,0.38396046,0.0000063602724,0.0000041691856,0.0000050754516,0.000047258767,0.000025401516,0.61292475,0.000104185296,0.0023137094,0.00007708051],"about_ca_topic_score_codex":0.00021211396,"about_ca_topic_score_gemma":0.0004023132,"teacher_disagreement_score":0.37748057,"about_ca_system_score_codex":0.000008348412,"about_ca_system_score_gemma":0.000048846392,"threshold_uncertainty_score":0.43243313},"labels":[],"label_agreement":null},{"id":"W2081200190","doi":"10.1002/cfg.193","title":"Microarray analysis of bacterial gene expression: towards the regulome","year":2002,"lang":"en","type":"article","venue":"Comparative and Functional Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal College of Physicians and Surgeons of Canada","funders":"European Commission; Wellcome Trust; Wellcome; GlaxoSmithKline","keywords":"Gene; Operon; Biology; Microarray analysis techniques; Regulator; Mutant; Genetics; Computational biology; Gene expression; Promoter; Microarray; DNA microarray","score_opus":0.04127271846433221,"score_gpt":0.23752517713469598,"score_spread":0.19625245867036378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081200190","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996568,0.0015387315,0.00090073585,0.00016117946,0.00022931637,0.00008477447,0.00010077832,0.000003864061,0.000412588],"genre_scores_gemma":[0.99748594,0.0005229577,0.00074232137,0.000100034005,0.00029171005,0.000008575786,0.00020139276,0.0000057344178,0.00064132805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993556,0.000039940478,0.00018707586,0.0002405602,0.00006176188,0.000115059505],"domain_scores_gemma":[0.9995376,0.000010586296,0.00009641253,0.00024140063,0.00007785689,0.000036179],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000073131596,0.00011459078,0.00020425676,0.000060708724,0.00009705003,0.000017604109,0.00011179018,0.00012917517,0.00023607249],"category_scores_gemma":[0.000007178239,0.00008138283,0.00010042348,0.00015004711,0.00022131288,0.0000020584905,0.00011666887,0.000059988542,0.0000040661453],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011087006,0.000035119552,0.00024600347,0.0000017464563,0.00035881385,2.0173678e-7,0.000093626615,0.00008523342,0.9965538,0.000074970565,0.0019723496,0.0004672623],"study_design_scores_gemma":[0.00030487712,0.00018354427,0.01772174,0.0000013673564,0.00017217237,0.0000086040745,0.00010149879,0.00028280102,0.8976605,0.0000375213,0.08339563,0.00012973518],"about_ca_topic_score_codex":0.0000041879516,"about_ca_topic_score_gemma":0.000011810214,"teacher_disagreement_score":0.09889329,"about_ca_system_score_codex":0.000006818745,"about_ca_system_score_gemma":0.000018098037,"threshold_uncertainty_score":0.33186954},"labels":[],"label_agreement":null},{"id":"W2081267140","doi":"10.1007/s00253-006-0549-5","title":"An acetoin-regulated expression system of Bacillussubtilis","year":2006,"lang":"en","type":"article","venue":"Applied Microbiology and Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Atlantic Canada Opportunities Agency","keywords":"Acetoin; Operon; CCPA; Bacillus subtilis; lac operon; Biochemistry; PEP group translocation; Biology; Reporter gene; Mutant; Chemistry; Gene expression; Gene; Catabolite repression; Bacteria; Genetics","score_opus":0.0027822124439668373,"score_gpt":0.17977863061014854,"score_spread":0.1769964181661817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081267140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974363,0.0006780908,0.0007609728,0.00019798095,0.00014238132,0.0002589724,0.00008041593,0.00011462783,0.0003302467],"genre_scores_gemma":[0.9964464,0.00012153535,0.0027214387,0.000054049844,0.000101042846,0.000019280595,0.00046037298,0.000024336545,0.00005156601],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985215,0.000048024478,0.00038171932,0.00064296083,0.000029324216,0.0003764908],"domain_scores_gemma":[0.9991,0.000007701071,0.00019277913,0.0006086656,0.000050045983,0.00004077296],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00014974759,0.0002605814,0.00036232048,0.00015706284,0.00010214568,0.00000799136,0.00034763568,0.0019131679,0.000012262183],"category_scores_gemma":[0.0000062369913,0.00022519354,0.0000539403,0.00015675985,0.0008439009,0.0000025174852,0.00025248856,0.00017887015,0.0000067947576],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017461444,0.000083891995,0.00018383641,0.000029540648,0.000028158493,0.00000209601,0.0000047579506,0.000005835706,0.98838985,0.00824773,0.00026395638,0.002585757],"study_design_scores_gemma":[0.0007037027,0.00049373135,0.0006469223,0.000010823016,0.000021774367,0.00016097931,0.00009146878,0.000008188698,0.9797395,0.00017198964,0.017705915,0.0002450222],"about_ca_topic_score_codex":0.00002864186,"about_ca_topic_score_gemma":0.000042773438,"teacher_disagreement_score":0.01744196,"about_ca_system_score_codex":0.000010597016,"about_ca_system_score_gemma":0.000029837485,"threshold_uncertainty_score":0.99938256},"labels":[],"label_agreement":null},{"id":"W2081905846","doi":"10.1139/w03-058","title":"Regulation of<i>toxA</i>by PtxR in<i>Pseudomonas aeruginosa</i>PA103","year":2003,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; U.S. Department of Education","keywords":"Pseudomonas aeruginosa; Pseudomonas exotoxin; Plasmid; Biology; Locus (genetics); Gene; Phenotype; DNA; Strain (injury); Molecular biology; Genetics; Bacteria","score_opus":0.004549237501770313,"score_gpt":0.18421577717755516,"score_spread":0.17966653967578486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081905846","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953694,0.0031360774,0.00012109435,0.00031448985,0.0004989659,0.00007961454,0.000060378658,0.0000011385617,0.00041886122],"genre_scores_gemma":[0.9984354,0.00021191878,0.0008585326,0.00021022184,0.00007063783,9.722269e-7,0.000051919807,0.000013411576,0.00014702573],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998926,0.00011937827,0.00044718492,0.00017309005,0.000024619083,0.0003097551],"domain_scores_gemma":[0.9992406,0.000009644157,0.00026209274,0.00019793269,0.0001397569,0.00015002523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028743615,0.00013150382,0.0002578446,0.00019355213,0.000032014967,0.0000073608717,0.00023653844,0.00043318165,0.00007215241],"category_scores_gemma":[0.00011534518,0.00012556413,0.00009178291,0.00012992769,0.00022526635,0.0000030064475,0.0000149581465,0.00016125025,0.0000035056491],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026322954,0.000016705973,0.004272234,0.0000053893423,0.000028228364,0.000008201553,0.000018883055,0.00001527963,0.98905045,0.00023772719,0.0056076716,0.0007129198],"study_design_scores_gemma":[0.0005215025,0.00032937,0.0012479164,0.000012571018,0.000009394897,0.00041317136,0.000025322019,3.2474017e-7,0.7111029,0.00016010668,0.28606832,0.00010908112],"about_ca_topic_score_codex":0.00032049516,"about_ca_topic_score_gemma":0.005935003,"teacher_disagreement_score":0.28046063,"about_ca_system_score_codex":0.000034291457,"about_ca_system_score_gemma":0.0006306918,"threshold_uncertainty_score":0.5120356},"labels":[],"label_agreement":null},{"id":"W2082251107","doi":"10.1074/jbc.m112.412577","title":"Domain Organization of the Polymerizing Mannosyltransferases Involved in Synthesis of the Escherichia coli O8 and O9a Lipopolysaccharide O-antigens","year":2012,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; Alberta Glycomics Centre; University of Alberta; University of Guelph","funders":"","keywords":"Escherichia coli; Biology; Biochemistry; Enzyme; Gene","score_opus":0.009791218463512726,"score_gpt":0.20716325277584186,"score_spread":0.19737203431232914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082251107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985913,0.0008335235,0.00003436393,0.00033305195,0.00010263164,0.000058071575,0.000015252595,0.0000014682572,0.000030308662],"genre_scores_gemma":[0.99889046,0.00063296146,0.00027293045,0.00005861267,0.00012867109,0.0000010192856,0.0000019318231,0.000007082009,0.0000063295856],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99920446,0.00007127466,0.00038511064,0.000100569974,0.0000834108,0.00015515772],"domain_scores_gemma":[0.99936,0.000029686826,0.00031826622,0.0001770418,0.00007360257,0.00004139789],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022738717,0.00010778305,0.00022027854,0.000013918511,0.00003649674,0.0000052818204,0.0002922263,0.00031184795,0.000017603312],"category_scores_gemma":[0.0002767199,0.000057772137,0.000094341194,0.00014196709,0.00027289658,0.000003374453,0.00014539938,0.00015358909,7.06766e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003424636,0.00007160275,0.14005013,0.000021777349,0.000027764298,2.6358887e-7,0.000019012256,9.813522e-7,0.85955644,0.000020228872,0.00000862667,0.00018891427],"study_design_scores_gemma":[0.0001668758,0.000049639835,0.06994516,0.000040906132,0.000019690407,0.000020071995,0.00015300295,4.2403664e-7,0.92921597,0.000029713616,0.00029215173,0.00006640464],"about_ca_topic_score_codex":0.000007550141,"about_ca_topic_score_gemma":0.0000025084487,"teacher_disagreement_score":0.07010497,"about_ca_system_score_codex":0.000008517286,"about_ca_system_score_gemma":0.00004872172,"threshold_uncertainty_score":0.24052571},"labels":[],"label_agreement":null},{"id":"W2083260002","doi":"10.1016/j.plasmid.2014.07.003","title":"The FinO family of bacterial RNA chaperones","year":2014,"lang":"en","type":"review","venue":"Plasmid","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Biology; RNA; Antisense RNA; Plasmid; Transcription (linguistics); RNA-binding protein; Messenger RNA; Genetics; Chaperone (clinical); Regulation of gene expression; Escherichia coli; Gene; Cell biology","score_opus":0.018454563470389332,"score_gpt":0.2664876271085396,"score_spread":0.2480330636381503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083260002","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002275073,0.99527407,0.00001723022,0.000027425174,0.0013555925,0.00028289296,0.000120310346,0.000010490041,0.0006369284],"genre_scores_gemma":[0.00035929776,0.9979074,0.000096964046,0.000023745788,0.00076411216,0.000040832132,0.00037670156,0.00004155159,0.00038938993],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986585,0.00010001743,0.00049116445,0.00036804852,0.000099372344,0.00028292407],"domain_scores_gemma":[0.9988517,0.000045713245,0.0003634279,0.0006411435,0.000052150262,0.000045860925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019648607,0.0003078662,0.00074565614,0.00004035976,0.000084933665,0.000029180868,0.0006271117,0.0008021407,0.000017973298],"category_scores_gemma":[0.00008732295,0.00019349079,0.0003293028,0.00007402175,0.00022797938,6.618955e-7,0.0003092605,0.00016711811,0.000035977377],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030609073,0.000023860097,3.262853e-7,0.0011356367,0.00017145439,6.230357e-7,0.000002599939,1.2435878e-7,0.0549973,0.00027673497,0.0030455973,0.9403151],"study_design_scores_gemma":[0.00012021761,0.00023553865,0.0000020627635,0.00030813686,0.00011977903,0.000010675943,0.0000023163998,6.3902286e-7,0.006614653,0.00001728245,0.99235165,0.00021707508],"about_ca_topic_score_codex":0.0000043991695,"about_ca_topic_score_gemma":0.000012549395,"teacher_disagreement_score":0.98930603,"about_ca_system_score_codex":0.0000073898004,"about_ca_system_score_gemma":0.00014566613,"threshold_uncertainty_score":0.7890325},"labels":[],"label_agreement":null},{"id":"W2083873972","doi":"10.1016/s1097-2765(03)00402-7","title":"MazF Cleaves Cellular mRNAs Specifically at ACA to Block Protein Synthesis in Escherichia coli","year":2003,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":556,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Canadian Institutes of Health Research","keywords":"Biology; Escherichia coli; Escherichia coli Proteins; Cell biology; Protein biosynthesis; Gene; Molecular biology; Biochemistry","score_opus":0.0062859281342493144,"score_gpt":0.19165714035947654,"score_spread":0.18537121222522723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083873972","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917225,0.00051937054,0.00047791397,0.00035061763,0.00012739221,0.0005869327,0.000013720379,0.00002204368,0.006179468],"genre_scores_gemma":[0.99144775,0.000069480295,0.0060952073,0.00038441387,0.00006249021,0.0000998599,0.00001915789,0.00006464482,0.0017570158],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980581,0.00016569773,0.00034284656,0.0007101766,0.00017063077,0.0005525962],"domain_scores_gemma":[0.9989886,0.000006762035,0.00008448598,0.0006911783,0.00004801583,0.00018092127],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002088168,0.0003070763,0.00027246343,0.00010089383,0.000064473265,0.000038316397,0.00037398902,0.0005260778,0.00010183989],"category_scores_gemma":[0.00010668501,0.0003181778,0.00013084123,0.00026073115,0.00008431907,0.0000017418339,0.00024887544,0.0001769023,0.00013675092],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009710358,0.00014841062,0.00013772455,0.000020751655,0.000019523914,0.00007471136,0.000016361095,0.00004534157,0.998565,0.00021355152,0.00033665085,0.00032483085],"study_design_scores_gemma":[0.0003266041,0.0002504535,0.00016618114,0.000012946467,0.0000120465575,0.000004373627,0.000024990131,0.000004842475,0.8176558,0.00005196978,0.18115456,0.00033521221],"about_ca_topic_score_codex":0.0000144608775,"about_ca_topic_score_gemma":0.000042288233,"teacher_disagreement_score":0.18090922,"about_ca_system_score_codex":0.00004587478,"about_ca_system_score_gemma":0.000070516915,"threshold_uncertainty_score":0.99992704},"labels":[],"label_agreement":null},{"id":"W2083975622","doi":"10.1016/j.str.2010.01.006","title":"TPR Motifs: Hallmarks of a New Polysaccharide Export Scaffold","year":2010,"lang":"en","type":"letter","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Bacteria; Cell envelope; Polysaccharide; Biology; Cell wall; Chemistry; Biochemistry; Escherichia coli; Genetics; Gene","score_opus":0.006320527070862189,"score_gpt":0.2159241551022969,"score_spread":0.2096036280314347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083975622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8580487,0.0014183825,0.000084568856,0.13502625,0.003439987,0.00052142824,0.00088766764,0.000048122496,0.00052488904],"genre_scores_gemma":[0.5403882,0.0011545069,0.010000487,0.3797802,0.038131736,0.000025046858,0.0071406425,0.0004732689,0.022905901],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981946,0.000028059154,0.00041245943,0.0006891076,0.00023513859,0.00044067972],"domain_scores_gemma":[0.99834293,0.0000059923377,0.00036240584,0.0010912307,0.000115040806,0.000082420294],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000054134114,0.000451327,0.0004901163,0.000118208256,0.00004071666,0.000029303841,0.0007491449,0.007932566,0.00036183294],"category_scores_gemma":[0.00005859463,0.00039696853,0.00024567882,0.00009715449,0.00018471436,0.0000016332415,0.00030848786,0.002037346,0.000004530849],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016822552,0.00000368084,0.000048255613,0.000045432644,0.000077510536,0.000015205765,0.0000074593345,3.0074176e-7,0.60394585,0.000006340382,0.39398247,0.001850672],"study_design_scores_gemma":[0.000195109,0.0001381514,0.0001919763,0.000018772267,0.000047903803,0.000064179076,0.0000037078607,5.2067446e-7,0.44303995,0.00033476134,0.55568784,0.00027709326],"about_ca_topic_score_codex":0.00011253089,"about_ca_topic_score_gemma":0.00016041745,"teacher_disagreement_score":0.3176605,"about_ca_system_score_codex":0.000008972001,"about_ca_system_score_gemma":0.00041234415,"threshold_uncertainty_score":0.99984825},"labels":[],"label_agreement":null},{"id":"W2084068985","doi":"10.1021/bi801576x","title":"Periplasmic Loops of Osmosensory Transporter ProP in <i>Escherichia coli</i> Are Sensitive to Osmolality","year":2008,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Periplasmic space; Chemistry; Biophysics; Osmotic concentration; Biochemistry; Transporter; Loop (graph theory); Transmembrane protein; Osmoregulation; Cysteine; Amino acid; Osmotic shock; Escherichia coli; Biology; Enzyme; Ecology; Gene","score_opus":0.009984481396366889,"score_gpt":0.21193230249720493,"score_spread":0.20194782110083803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084068985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987594,0.00009238742,0.000045821584,0.00024961669,0.0000788929,0.00022038608,0.00012484282,0.000015834132,0.0004128488],"genre_scores_gemma":[0.9979751,0.000090820155,0.0008925746,0.0003440175,0.00012115479,0.000018840014,0.00008776454,0.000024612977,0.0004451105],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986971,0.000031148345,0.0003395358,0.0005028855,0.00012145706,0.0003078566],"domain_scores_gemma":[0.9992027,0.0000048669776,0.00012029003,0.00045371827,0.00011253092,0.00010585658],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009484197,0.00022350266,0.0002842677,0.000038799106,0.00004065961,0.0000048729016,0.0002088796,0.00046743438,0.0000121402245],"category_scores_gemma":[0.000045724664,0.00022909993,0.00010046748,0.00018400204,0.00022343422,0.0000018115369,0.00008288718,0.00015405363,0.000006006909],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024054605,0.00013744815,0.007115072,0.000056407498,0.000024788178,0.000033495435,0.00006462504,0.0000067519013,0.9917067,0.0000022041352,0.0004626012,0.00014931137],"study_design_scores_gemma":[0.0004888137,0.00015255177,0.030660829,0.00003708464,0.000008576295,0.000040766805,0.00010827007,0.0000050320796,0.96592855,0.0000043618484,0.0023004834,0.00026465263],"about_ca_topic_score_codex":0.000036239602,"about_ca_topic_score_gemma":0.000032041695,"teacher_disagreement_score":0.02577817,"about_ca_system_score_codex":0.000023151233,"about_ca_system_score_gemma":0.00013561347,"threshold_uncertainty_score":0.93424237},"labels":[],"label_agreement":null},{"id":"W2084181607","doi":"10.1111/j.1574-6968.2008.01420.x","title":"Noncellulosomal cohesin- and dockerin-like modules in the three domains of life","year":2008,"lang":"en","type":"review","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research; Israel Science Foundation","keywords":"Cohesin; Cellulosome; Biology; Archaea; Proteome; Genetics; Computational biology; Bacteria; Gene; Biochemistry; Clostridium thermocellum; Cellulase; Chromatin; Enzyme","score_opus":0.014626009265843289,"score_gpt":0.23036715427261029,"score_spread":0.215741145006767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084181607","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20562588,0.79296976,0.000029977866,0.00040423073,0.0003009962,0.000487406,0.00015739625,0.000007413241,0.000016945423],"genre_scores_gemma":[0.004967909,0.99280083,0.00036927793,0.0008995491,0.00026234356,0.000046312587,0.0005980514,0.000040189083,0.000015562777],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981778,0.000232637,0.0005257942,0.00061686075,0.000042532694,0.00040436574],"domain_scores_gemma":[0.99890286,0.000046686786,0.0003398393,0.0006463643,0.000021577933,0.00004265879],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00014723062,0.00044084332,0.0010246207,0.00013461779,0.000065000786,0.000012346362,0.00069649913,0.001043507,0.000004656781],"category_scores_gemma":[0.000028558778,0.0003039845,0.00022587001,0.00014772703,0.0008931357,0.0000015428274,0.00032559395,0.0003751387,0.0000079339525],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056699904,0.000110283334,0.00021666785,0.0009768177,0.0003589357,0.000046896213,0.00004168389,0.0000017829817,0.90436345,0.000044658256,0.008881602,0.08490052],"study_design_scores_gemma":[0.00035824545,0.00022658681,0.00013159133,0.00023989902,0.00007445933,0.000557975,0.0000070532355,2.7965922e-7,0.0012334759,0.0000045264087,0.9968186,0.0003472825],"about_ca_topic_score_codex":0.000027874674,"about_ca_topic_score_gemma":0.000112776994,"teacher_disagreement_score":0.98793703,"about_ca_system_score_codex":0.000013918326,"about_ca_system_score_gemma":0.00010088043,"threshold_uncertainty_score":0.99994123},"labels":[],"label_agreement":null},{"id":"W2084425241","doi":"10.1107/s174430911103363x","title":"Crystallographic analysis of the C-terminal domain of the<i>Escherichia coli</i>lipoprotein BamC","year":2011,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology and Crystallization Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Crystallography; Chemistry; Biophysics; Antiparallel (mathematics); Protein structure; Biology; Biochemistry","score_opus":0.012129146343015573,"score_gpt":0.23461952437919598,"score_spread":0.2224903780361804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084425241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99748635,0.00036754715,0.000763574,0.00036405594,0.00018535867,0.00037900926,0.00011766861,0.00001593013,0.00032051146],"genre_scores_gemma":[0.99757403,0.0007087819,0.0013533741,0.000111411246,0.00002603401,0.000031652246,0.00015956617,0.000013109335,0.000022067235],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984669,0.00040799732,0.0005138694,0.0003163931,0.00009873366,0.00019606821],"domain_scores_gemma":[0.99772364,0.000026484671,0.000548835,0.0014249446,0.00023061184,0.000045467405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020143494,0.00020285665,0.00028843796,0.0002383735,0.00041330644,0.000011558597,0.001004361,0.00045691317,0.000037215166],"category_scores_gemma":[0.000057934172,0.00013684943,0.00031332215,0.0016982792,0.001847756,0.000010766553,0.0006673767,0.00022802918,1.45657815e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059878785,0.00004494501,0.045856763,0.000013434884,0.0005406069,4.632301e-8,0.00013849078,0.000008146941,0.94961953,0.0035476133,0.000011352121,0.00015921747],"study_design_scores_gemma":[0.0006269641,0.00043638962,0.9343671,0.000027503302,0.00088303443,0.000027093469,0.00036281237,0.00017855906,0.037226044,0.0068155946,0.018664138,0.000384775],"about_ca_topic_score_codex":0.00018965316,"about_ca_topic_score_gemma":0.0015238902,"teacher_disagreement_score":0.91239345,"about_ca_system_score_codex":0.000006805737,"about_ca_system_score_gemma":0.00005375648,"threshold_uncertainty_score":0.6808134},"labels":[],"label_agreement":null},{"id":"W2084499784","doi":"10.1128/jb.02043-14","title":"Emerging Roles for Anionic Non-Bilayer Phospholipids in Fortifying the Outer Membrane Permeability Barrier","year":2014,"lang":"en","type":"letter","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Bacterial outer membrane; Mutant; Escherichia coli; Membrane permeability; Cell membrane; Membrane; Phosphatidic acid; Biophysics; Bacterial cell structure; Biochemistry; Bacteria; Phospholipid; Genetics","score_opus":0.011583868814497498,"score_gpt":0.25166868946353843,"score_spread":0.24008482064904094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084499784","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8622651,0.0008111552,0.00088046136,0.1330686,0.0023811772,0.0004907752,0.000051215902,0.0000058987157,0.000045608413],"genre_scores_gemma":[0.84035367,0.0011661326,0.0014025505,0.14456573,0.011835699,0.00007343673,0.00018086784,0.00012295801,0.0002989685],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973763,0.0002553079,0.0010989001,0.000504131,0.00014142523,0.0006239244],"domain_scores_gemma":[0.99800575,0.00010195632,0.00090150913,0.000658247,0.00027193505,0.000060626317],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0011039762,0.00041990995,0.0008524182,0.00017804818,0.00010311262,0.000049590908,0.0008517853,0.0020509965,0.000054870103],"category_scores_gemma":[0.00021739541,0.00028644674,0.0005285496,0.00008318264,0.00027839583,0.0000067280043,0.0002266117,0.0013561453,0.0000031246657],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042549873,0.000039421535,0.0009987518,0.00014886021,0.00024496973,0.00003378523,0.00007274219,0.0000307733,0.93823135,0.0000033192725,0.054332584,0.005437965],"study_design_scores_gemma":[0.0010152309,0.001011475,0.0012512264,0.00007520648,0.00009245694,0.0004419841,0.00003251582,0.000083652085,0.06826,0.00014405782,0.927227,0.00036517094],"about_ca_topic_score_codex":0.000013453412,"about_ca_topic_score_gemma":0.000043124975,"teacher_disagreement_score":0.87289447,"about_ca_system_score_codex":0.000055849512,"about_ca_system_score_gemma":0.00022410446,"threshold_uncertainty_score":0.99995875},"labels":[],"label_agreement":null},{"id":"W2085491689","doi":"10.1074/jbc.m611250200","title":"P1 Partition Complex Assembly Involves Several Modes of Protein-DNA Recognition","year":2007,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; University of Toronto","keywords":"Plasmid; Dimer; Biology; DNA; Binding site; Stereochemistry; Biophysics; Crystallography; Molecular biology; Chemistry; Genetics","score_opus":0.042692628376425054,"score_gpt":0.26400572391575833,"score_spread":0.22131309553933326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085491689","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99811065,0.00019110026,0.0009305577,0.00011376832,0.000052262196,0.00007491866,0.000023888339,0.000006428453,0.00049642305],"genre_scores_gemma":[0.9958857,0.00015515511,0.0033215727,0.00006656954,0.0004403093,0.0000018215364,0.00008557531,0.000007628904,0.000035651035],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894804,0.00003180038,0.0005214325,0.00017220355,0.00011506672,0.00021143595],"domain_scores_gemma":[0.9990896,0.000012571287,0.00045234297,0.00013880485,0.00022020016,0.0000864994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041938206,0.00013675568,0.0002401483,0.000027632927,0.0000330759,0.0000104130495,0.00020048275,0.0004964062,0.000056742338],"category_scores_gemma":[0.00015067977,0.0001029719,0.00015525642,0.00007626509,0.00017867555,0.000004093035,0.000078302386,0.00017040338,0.0000013715146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038419387,0.00012058187,0.00046825287,0.000028975406,0.00004277747,0.0000069841944,0.0000043215596,0.0000033693511,0.99527633,0.000007002188,0.00011200197,0.0035452258],"study_design_scores_gemma":[0.0004497674,0.00069106655,0.0036100438,0.000033088727,0.000013287061,0.000091730646,0.00006480281,0.0000088542865,0.99208266,0.00045961348,0.0023596578,0.00013544923],"about_ca_topic_score_codex":0.0000015134893,"about_ca_topic_score_gemma":0.0000013056657,"teacher_disagreement_score":0.0034097766,"about_ca_system_score_codex":0.000015562227,"about_ca_system_score_gemma":0.000042567357,"threshold_uncertainty_score":0.41990724},"labels":[],"label_agreement":null},{"id":"W2085627219","doi":"10.1186/1471-2164-8-369","title":"Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes","year":2007,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Skew; Replication (statistics); Genetics; Replication timing; Origin of replication; DNA replication; Selection (genetic algorithm); Gene; Computational biology; Mutation; Computer science","score_opus":0.005426927835720346,"score_gpt":0.22577487951396194,"score_spread":0.2203479516782416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085627219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99906963,0.00024091305,0.00029409878,0.000019593646,0.000117848474,0.00023758554,0.0000012179407,0.0000028984814,0.000016223705],"genre_scores_gemma":[0.9983505,0.00009150184,0.0013567489,0.000013977497,0.00015097509,0.00000585279,0.000011439103,0.00000783743,0.000011148213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994453,0.000033398162,0.00018502418,0.00017612403,0.000027373131,0.00013274659],"domain_scores_gemma":[0.99980277,0.000022268452,0.00007425175,0.00007214612,0.000016582168,0.000011981324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027493667,0.00007007351,0.000088893474,0.00004901084,0.000022548598,0.000009418942,0.00005784157,0.00013937335,7.4600433e-7],"category_scores_gemma":[0.00009931366,0.000059885522,0.000015378868,0.00008991548,0.0000338885,0.000001772485,0.000050707127,0.000056551846,2.5935248e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000649998,0.00001783387,0.006686345,0.00003668949,0.0000041575277,8.1080776e-7,0.00017035147,0.000023944664,0.98876315,0.000015674963,0.0000029594266,0.0042130756],"study_design_scores_gemma":[0.00038151894,0.00017381343,0.101849414,0.000011698577,0.00000385422,0.000011118486,0.0000403861,0.000054823995,0.8971177,0.000046607678,0.00024685892,0.0000622387],"about_ca_topic_score_codex":0.000048961414,"about_ca_topic_score_gemma":0.0024066602,"teacher_disagreement_score":0.09516307,"about_ca_system_score_codex":0.000017380127,"about_ca_system_score_gemma":0.000043893677,"threshold_uncertainty_score":0.24420607},"labels":[],"label_agreement":null},{"id":"W2085696665","doi":"10.1128/aem.00572-15","title":"Mutational Analysis of the Antitoxin in the Lactococcal Type III Toxin-Antitoxin System AbiQ","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Antitoxin; Toxin; Microbiology; Biology","score_opus":0.0060935019145481086,"score_gpt":0.19037898423124977,"score_spread":0.18428548231670167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085696665","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989844,0.00022387916,0.00002361532,0.00010495471,0.000108519605,0.0001899396,0.000077410674,0.0000027675615,0.0002845266],"genre_scores_gemma":[0.99928194,0.000045454428,0.00007295546,0.00019271899,0.00004542702,0.000011054041,0.00031056086,0.0000060724014,0.00003380962],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99931234,0.00006157364,0.00020815144,0.0002303323,0.00003864059,0.0001489504],"domain_scores_gemma":[0.99964267,0.000010526832,0.00008564139,0.00023634314,0.000005371765,0.000019421686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017522735,0.00010954495,0.00017634049,0.000059339836,0.0000392925,0.000006418479,0.00022123956,0.00021914965,0.000009131856],"category_scores_gemma":[0.000005197162,0.00006786898,0.000049253045,0.00020811349,0.00030692088,0.0000010822107,0.00016830402,0.00008489288,0.000003854097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054350472,0.000048493162,0.0057783285,0.0000033395613,0.00010423242,9.010341e-7,0.000070603004,0.00005892389,0.992889,0.0006749795,0.00012885091,0.00018803206],"study_design_scores_gemma":[0.0016612951,0.00037959445,0.08600901,0.000006945416,0.0003057966,0.00012663574,0.0024450356,0.000083246116,0.88383734,0.00008741239,0.024737822,0.0003198633],"about_ca_topic_score_codex":0.000022498118,"about_ca_topic_score_gemma":0.00004584323,"teacher_disagreement_score":0.10905162,"about_ca_system_score_codex":0.00001492828,"about_ca_system_score_gemma":0.000019324641,"threshold_uncertainty_score":0.27676168},"labels":[],"label_agreement":null},{"id":"W2085719092","doi":"10.1139/w06-113","title":"The <i>glnAntrBC</i> operon of <i>Herbaspirillum seropedicae</i> is transcribed by two oppositely regulated promoters upstream of <i>glnA</i>","year":2007,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Operon; Promoter; Biology; Genetics; Mutant; Gene; Transcription (linguistics); lac operon; Molecular biology; Plasmid; Gene expression","score_opus":0.004859978745949231,"score_gpt":0.20233142364563414,"score_spread":0.1974714448996849,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085719092","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919502,0.004965397,0.00017047461,0.0017424889,0.00051131076,0.00018298895,0.00030854758,0.0000024563337,0.0001661366],"genre_scores_gemma":[0.99798614,0.0006207366,0.0003190564,0.0006393993,0.00012198542,8.002337e-7,0.00006387583,0.000027451788,0.00022054104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99819875,0.00010860991,0.0008562164,0.0002398729,0.000060605857,0.0005359513],"domain_scores_gemma":[0.9984202,0.000025382835,0.0005569701,0.00037798396,0.00034473414,0.00027476563],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00072792283,0.00021712892,0.0004034734,0.000110926434,0.00010440163,0.000012565874,0.00068644324,0.00046426282,0.000028505527],"category_scores_gemma":[0.000048379377,0.00015868187,0.00020616107,0.00016843126,0.00089866336,0.000004440544,0.000039176568,0.00023576977,0.0000015102675],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026483528,0.000032373337,0.000905732,0.000013550798,0.0001695396,0.000011250352,0.000086874534,0.0000021601327,0.9814105,0.000019115896,0.011456291,0.005627784],"study_design_scores_gemma":[0.00087743433,0.0009274481,0.00012108283,0.000029669189,0.000043588836,0.00032577253,0.00007250276,3.6347345e-7,0.75815916,0.000014548902,0.23930268,0.00012577565],"about_ca_topic_score_codex":0.0011718359,"about_ca_topic_score_gemma":0.0105059305,"teacher_disagreement_score":0.22784638,"about_ca_system_score_codex":0.000029629895,"about_ca_system_score_gemma":0.00061238545,"threshold_uncertainty_score":0.64708585},"labels":[],"label_agreement":null},{"id":"W2086406020","doi":"10.1016/j.jinorgbio.2009.09.012","title":"Structural biology of heme binding in the Staphylococcus aureus Isd system","year":2009,"lang":"en","type":"review","venue":"Journal of Inorganic Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Heme; Internalization; Hemoglobin; Chemistry; Staphylococcus aureus; Haptoglobin; Transporter; Biochemistry; Cell biology; Bacteria; Cell; Biophysics; Microbiology; Biology; Enzyme; Gene; Genetics; Immunology","score_opus":0.015256777225253032,"score_gpt":0.2744862195488183,"score_spread":0.25922944232356526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086406020","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13121794,0.867972,0.000007397902,0.00005129386,0.00035761532,0.0002062971,0.00009493683,0.0000044163357,0.00008805765],"genre_scores_gemma":[0.15056206,0.84812516,0.00020884078,0.000028256485,0.0009115867,0.0000037760049,0.000095941534,0.000034801193,0.00002959207],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.997472,0.00018411521,0.0014395099,0.0003554059,0.0001874855,0.0003614924],"domain_scores_gemma":[0.99725217,0.000035567347,0.0018153866,0.000654306,0.00017196884,0.000070589034],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005730539,0.00045041274,0.0013596994,0.00018745774,0.000044773955,0.000027370605,0.00142189,0.0015322035,0.00001590892],"category_scores_gemma":[0.00013155061,0.0002871157,0.0005647557,0.00038292524,0.0001813167,0.0000028043135,0.00018333073,0.0007888546,0.0000024880114],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004039328,0.00006743526,0.00002815981,0.0040753116,0.00031247034,0.00003834862,0.000021831167,4.7610177e-7,0.88345575,0.00004307834,0.0006807788,0.11123593],"study_design_scores_gemma":[0.0009726598,0.0012395836,0.000026515263,0.005160538,0.00070249307,0.0021141053,0.0003737381,0.0000011667986,0.43313837,0.000031970092,0.5554205,0.0008183082],"about_ca_topic_score_codex":0.0000043103296,"about_ca_topic_score_gemma":0.0000024940227,"teacher_disagreement_score":0.5547398,"about_ca_system_score_codex":0.0000955969,"about_ca_system_score_gemma":0.0005712952,"threshold_uncertainty_score":0.9999581},"labels":[],"label_agreement":null},{"id":"W2086630637","doi":"10.1139/w07-007","title":"Conditions that allow for effective transfer of membrane proteins onto nitrocellulose membrane in Western blots","year":2007,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Cystic Fibrosis Foundation","keywords":"Nitrocellulose; Blot; Membrane; Membrane protein; Lysis; Gel electrophoresis; Polyacrylamide gel electrophoresis; Sodium dodecyl sulfate; Chemistry; Chromatography; Transmembrane protein; Biochemistry; Lysis buffer; Enzyme","score_opus":0.00752838434940855,"score_gpt":0.21766855383843772,"score_spread":0.21014016948902917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086630637","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967911,0.0006609787,0.0010317999,0.00035068634,0.00031830947,0.0005305234,0.00026665465,0.0000017321207,0.000048198915],"genre_scores_gemma":[0.9989409,0.00007162729,0.000417617,0.00019493767,0.00014473591,0.000010284656,0.00011619314,0.000019912122,0.00008383269],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887717,0.00006383932,0.0004278459,0.00019724718,0.000026041476,0.00040785418],"domain_scores_gemma":[0.9992633,0.000035947392,0.00014253373,0.00015850984,0.00021622982,0.00018346675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000450803,0.00016132057,0.00035157872,0.00028612203,0.000043289157,0.0000068851036,0.00026579257,0.0004860229,0.000028161627],"category_scores_gemma":[0.000068220164,0.00014959945,0.00013899128,0.000104950625,0.00025668505,0.000003992081,0.000013998004,0.00017294196,0.0000012295924],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002745958,0.00004293665,0.0027459734,0.0000376509,0.00009921855,0.000024338182,0.000082156774,0.00001184429,0.99601984,0.00004246056,0.00010116612,0.00051784527],"study_design_scores_gemma":[0.0016421904,0.0012311968,0.003896248,0.00004224967,0.000035001103,0.00031442306,0.000057288795,5.037063e-7,0.96575755,0.000038614213,0.026835458,0.00014928397],"about_ca_topic_score_codex":0.0006955623,"about_ca_topic_score_gemma":0.10925368,"teacher_disagreement_score":0.10855812,"about_ca_system_score_codex":0.000046128527,"about_ca_system_score_gemma":0.00045886656,"threshold_uncertainty_score":0.9070001},"labels":[],"label_agreement":null},{"id":"W2086801987","doi":"10.1021/bi047383o","title":"A Structural Model for the Osmosensor, Transporter, and Osmoregulator ProP of<i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Periplasmic space; Major facilitator superfamily; Symporter; Escherichia coli; Transporter; Biophysics; Biochemistry; Transmembrane domain; Cytoplasm; Helix (gastropod); Chemistry; Protein structure; ATP-binding cassette transporter; Biology; Membrane transport protein; Lactose permease; C-terminus; Amino acid; Gene","score_opus":0.009690820266114284,"score_gpt":0.22075399148822805,"score_spread":0.21106317122211377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086801987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964722,0.0014506725,0.0008625883,0.0007291682,0.000050368875,0.0002577532,0.00012903022,0.000011207712,0.00003703085],"genre_scores_gemma":[0.9937269,0.00015487878,0.0048918626,0.00021262828,0.0002560136,0.00003381605,0.00006286257,0.000019923806,0.000641133],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992279,0.0000055020278,0.00020487752,0.00029347895,0.00006757525,0.00020070051],"domain_scores_gemma":[0.99944794,0.000007305105,0.00008724481,0.00034004086,0.00006618825,0.00005129615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006979537,0.00015868543,0.00014375827,0.000009400073,0.00007065432,0.000012632641,0.00020208531,0.0002837158,0.0000071156715],"category_scores_gemma":[0.000018624643,0.00011655537,0.00008588014,0.00004057923,0.00022427378,0.0000016851141,0.00005189699,0.000067357105,3.662122e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012825687,0.000017810517,0.0001031129,0.000045601395,0.000044139775,1.2305811e-7,0.000022005077,0.00007674831,0.9950256,0.00003527365,0.0005860789,0.0039152508],"study_design_scores_gemma":[0.0005511416,0.00008185117,0.00043270842,0.000006196447,0.000041418763,0.0000088486795,0.00001977107,0.011367643,0.9803968,0.000045874065,0.0068866685,0.00016108638],"about_ca_topic_score_codex":0.0000019302981,"about_ca_topic_score_gemma":0.0000069669836,"teacher_disagreement_score":0.014628807,"about_ca_system_score_codex":0.000005822442,"about_ca_system_score_gemma":0.00006823871,"threshold_uncertainty_score":0.475299},"labels":[],"label_agreement":null},{"id":"W2086876593","doi":"10.1046/j.1462-2920.2002.00288.x","title":"<i>Pseudomonas aeruginosa</i> O‐antigen chain length is determined before ligation to lipid A core","year":2002,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Pseudomonas aeruginosa; Ligation; Microbiology; Core (optical fiber); Antigen; Computational biology; Molecular biology; Bacteria; Genetics","score_opus":0.007223040964090784,"score_gpt":0.18913582933932588,"score_spread":0.18191278837523508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086876593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99735284,0.0003229084,0.00008950276,0.001089818,0.0003504259,0.00037723812,0.00026195496,0.000025245752,0.0001300464],"genre_scores_gemma":[0.99347293,0.0004534748,0.0011118648,0.0026797769,0.00036333903,0.000034491586,0.0004911951,0.000038316404,0.001354588],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985201,0.00004198126,0.00028776634,0.0006450977,0.00004549538,0.00045958342],"domain_scores_gemma":[0.99930036,0.0000050480785,0.00009837314,0.0004740552,0.000007088843,0.00011509363],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0000730938,0.00028528954,0.00023254758,0.00006808217,0.000107603875,0.000013673034,0.00032768786,0.0005163338,0.00042410378],"category_scores_gemma":[0.000011014753,0.00027777962,0.00011233299,0.00007004357,0.00022007835,0.0000031465438,0.00034686385,0.00013082447,0.00046803808],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035525885,0.000101396196,0.002863907,0.0000035547134,0.00004080642,0.0000043883692,0.00012759556,0.000002280007,0.9839689,0.00000840761,0.004141243,0.008701964],"study_design_scores_gemma":[0.00045805928,0.00089262717,0.0016571692,0.0000052284504,0.000011411061,0.00012127972,0.000030391762,0.000017219485,0.743134,0.000011473637,0.25339472,0.00026640453],"about_ca_topic_score_codex":0.0000072937896,"about_ca_topic_score_gemma":0.000027386537,"teacher_disagreement_score":0.24925348,"about_ca_system_score_codex":0.000036629204,"about_ca_system_score_gemma":0.000007310707,"threshold_uncertainty_score":0.99996746},"labels":[],"label_agreement":null},{"id":"W2087002427","doi":"10.1016/j.bbamem.2010.07.007","title":"Evidence that the translocon may function as a hydropathy partitioning filter","year":2010,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Foundation","keywords":"Translocon; Transmembrane domain; Helix (gastropod); Transmembrane protein; Context (archaeology); Biophysics; Chemistry; Biology; Membrane; Membrane protein; Biochemistry","score_opus":0.02083335123247568,"score_gpt":0.2529636048508111,"score_spread":0.23213025361833542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087002427","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98893124,0.00028134,0.00006684433,0.008903962,0.0009545691,0.00041928215,0.00006486383,0.00008246743,0.00029540728],"genre_scores_gemma":[0.99613243,0.000872675,0.00015414858,0.0013362537,0.00079693913,0.00008829311,0.00022241303,0.000053855903,0.0003429715],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980598,0.00013144732,0.0003190883,0.00075610826,0.00024361024,0.0004899549],"domain_scores_gemma":[0.99856573,0.000050525716,0.00024945877,0.00092679216,0.000086731416,0.000120731806],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00030746075,0.0003949821,0.00025875826,0.000100072764,0.00029662266,0.0001847808,0.0006473647,0.0005361212,0.0001173712],"category_scores_gemma":[0.00008280578,0.0002861581,0.0002529207,0.00029260182,0.0005665584,0.00002384855,0.00019746994,0.00038401998,0.000095122625],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002746744,0.00009987334,0.000015953321,0.00002870692,0.000084298146,0.0000022147715,0.00008006456,9.4812157e-7,0.9965435,0.00017928891,0.0006171453,0.0020732929],"study_design_scores_gemma":[0.0003644673,0.0005852789,0.0025914335,0.000042561544,0.00008694248,0.000047198217,0.000054306187,0.000033224558,0.9700438,0.00024340175,0.025499927,0.00040749979],"about_ca_topic_score_codex":0.00006503506,"about_ca_topic_score_gemma":0.00008232907,"teacher_disagreement_score":0.02649978,"about_ca_system_score_codex":0.000007777487,"about_ca_system_score_gemma":0.000101477075,"threshold_uncertainty_score":0.99995905},"labels":[],"label_agreement":null},{"id":"W2087918530","doi":"10.1139/w04-105","title":"Overexpression of the <i>ftsZ</i> gene from <i>Corynebacterium glutamicum</i> (<i>Brevibacterium lactofermentum)</i> in <i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Corynebacterium glutamicum; FtsZ; Escherichia coli; Biology; Corynebacterium diphtheriae; Brevibacterium; Microbiology; Gene; Molecular biology; Corynebacterium; Bacteria; Biochemistry; Genetics; Virology","score_opus":0.00476575419742406,"score_gpt":0.18467108759530707,"score_spread":0.179905333397883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087918530","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956665,0.0016616568,0.000021756365,0.001176866,0.00082113844,0.00015700208,0.00038858235,0.000002142401,0.000104322535],"genre_scores_gemma":[0.99655724,0.00029681792,0.0006929294,0.0018026995,0.00044650893,0.0000025479055,0.000072717274,0.000025936637,0.000102598126],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99837685,0.00018748178,0.00068333006,0.00026766103,0.000048378686,0.00043630356],"domain_scores_gemma":[0.99871916,0.000015787728,0.00050655135,0.00043162963,0.00014138427,0.00018546326],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021261515,0.00022893611,0.00039572723,0.00011273672,0.000058450194,0.000017141949,0.0007344813,0.0005083705,0.00008260893],"category_scores_gemma":[0.0000565923,0.00017511647,0.00019140495,0.00015846304,0.00031391383,0.0000085193005,0.00012235463,0.00033584266,0.000005248595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010201059,0.00003867752,0.004697877,0.000006750218,0.000043609074,0.0000053701674,0.00004337018,0.00001825403,0.9918897,0.000009230855,0.002543276,0.0006018478],"study_design_scores_gemma":[0.0006988773,0.00017609338,0.0072196038,0.000054370495,0.000017589111,0.00009090739,0.000015308533,0.0000010399552,0.7212995,0.000019534618,0.27026546,0.00014167004],"about_ca_topic_score_codex":0.00074623385,"about_ca_topic_score_gemma":0.009343231,"teacher_disagreement_score":0.2705902,"about_ca_system_score_codex":0.000073854135,"about_ca_system_score_gemma":0.000794692,"threshold_uncertainty_score":0.71410424},"labels":[],"label_agreement":null},{"id":"W2089068194","doi":"10.1074/jbc.m114.567388","title":"Substrate Specificity and Kinetic Characterization of Peptidoglycan O-Acetyltransferase B from Neisseria gonorrhoeae","year":2014,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; University of Washington","keywords":"Peptidoglycan; Microbiology; Cell wall; Bacterial outer membrane; Cell envelope; Neisseria gonorrhoeae; Bacterial cell structure; Biology; Neisseria; Bacillus anthracis; Bacteria; Virulence factor; Biochemistry; Virulence; Escherichia coli","score_opus":0.010293806034031426,"score_gpt":0.2066673075537258,"score_spread":0.19637350151969438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089068194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99882215,0.00015746217,0.00059903326,0.00014167778,0.00009060014,0.000043924887,0.00005106381,0.00000433873,0.00008974745],"genre_scores_gemma":[0.9980184,0.000776449,0.000540899,0.000048314385,0.00047979428,9.501359e-7,0.00010772296,0.000008873094,0.00001859542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991215,0.000044322853,0.00043090325,0.00021113471,0.0000413932,0.00015074259],"domain_scores_gemma":[0.99929804,0.000015364347,0.00030197174,0.00017746307,0.000109578934,0.00009758049],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015834237,0.00015223249,0.00028964196,0.000017253951,0.000024734583,0.000016520724,0.00019862408,0.00038230687,0.00006348263],"category_scores_gemma":[0.00008256662,0.00011617722,0.000093976574,0.000054729124,0.00018453084,0.0000032376106,0.000055502842,0.00015163572,5.847104e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022654358,0.000060119226,0.005238652,0.000015599226,0.000031969463,7.5772e-7,0.000007320537,0.0000015426655,0.9929265,0.000010142607,0.000010120345,0.0014707455],"study_design_scores_gemma":[0.000473926,0.0004994529,0.055356745,0.000018060124,0.00001800629,0.000043127624,0.00002131062,0.000011094025,0.9383101,0.00009066876,0.005030005,0.00012748796],"about_ca_topic_score_codex":0.0000042574093,"about_ca_topic_score_gemma":0.0000019198956,"teacher_disagreement_score":0.054616373,"about_ca_system_score_codex":0.0000058563746,"about_ca_system_score_gemma":0.000025630026,"threshold_uncertainty_score":0.47375697},"labels":[],"label_agreement":null},{"id":"W2089197146","doi":"10.1016/j.chemosphere.2014.12.035","title":"Oxidative stress and metabolic perturbations in Escherichia coli exposed to sublethal levels of 2,4-dichlorophenoxyacetic acid","year":2015,"lang":"en","type":"article","venue":"Chemosphere","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Regina","funders":"","keywords":"Escherichia coli; Oxidative stress; Biochemistry; Oxidative phosphorylation; Bacteria; Peptidoglycan; Biology; Metabolism; Metabolic pathway; Reactive oxygen species; Metabolomics; Toxicity; Xenobiotic; Phenotype; Amino acid; Microbiology; Chemistry; Enzyme; Genetics; Gene; Bioinformatics","score_opus":0.021325011873791544,"score_gpt":0.2438425134682953,"score_spread":0.22251750159450376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089197146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99692595,0.0016179612,0.00023052757,0.00040661165,0.00009334286,0.00022117925,0.00006954025,0.000008778684,0.0004260911],"genre_scores_gemma":[0.99484205,0.00008175701,0.0045746192,0.00012814654,0.00006714961,0.000022858225,0.000033678036,0.000018111426,0.00023161154],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991654,0.000038043072,0.00019174127,0.00030894115,0.00008798213,0.00020785767],"domain_scores_gemma":[0.99938804,0.000006317525,0.000070063856,0.0002833817,0.00012520509,0.00012700372],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010990315,0.00015158008,0.00022924367,0.00002027405,0.000021521473,0.000014728658,0.00017969386,0.000240725,0.000030329997],"category_scores_gemma":[0.00014290506,0.00014401952,0.000030501555,0.00019667942,0.00011873013,0.0000035950932,0.00018102683,0.00008929939,0.0000037596333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000750623,0.000063370026,0.0013186238,0.000014205862,0.000024682255,0.0000011873843,0.00024302416,0.00001587142,0.99609077,0.0001086342,0.00016511361,0.0018794534],"study_design_scores_gemma":[0.0007618935,0.00027778337,0.008745361,0.000014794927,0.000013220592,0.000002076113,0.0005396485,0.0000179571,0.98456144,0.00009276242,0.004801977,0.00017109077],"about_ca_topic_score_codex":0.000026508713,"about_ca_topic_score_gemma":0.00015509105,"teacher_disagreement_score":0.011529337,"about_ca_system_score_codex":0.000012007654,"about_ca_system_score_gemma":0.00011976733,"threshold_uncertainty_score":0.5872945},"labels":[],"label_agreement":null},{"id":"W2090041944","doi":"10.1128/jb.02372-14","title":"Altering the Divalent Metal Ion Preference of RNase E","year":2014,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; University of British Columbia","keywords":"RNase P; Endoribonuclease; Divalent; RNase H; Biology; Biochemistry; Mutant; Enzyme; RNA; RNase PH; Chelation; Metal; Chemistry; Inorganic chemistry; Gene","score_opus":0.016558431551075118,"score_gpt":0.23238606029549488,"score_spread":0.21582762874441977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090041944","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974392,0.0002712354,0.0010326249,0.00043396343,0.0006487217,0.000053203927,0.0000050081826,0.0000019916286,0.000114048766],"genre_scores_gemma":[0.99837923,0.00041360356,0.0005850027,0.00010900514,0.00046333877,0.0000015256556,0.000005341942,0.000008696435,0.00003422876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909025,0.00014659116,0.00041400697,0.0001232935,0.00007009167,0.0001557912],"domain_scores_gemma":[0.9990983,0.000022210512,0.0004499005,0.00025836454,0.00012856458,0.000042640848],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041869163,0.00010589321,0.0002461584,0.000049238883,0.0000337124,0.000007762495,0.000356847,0.00018413553,0.000022710989],"category_scores_gemma":[0.00013707404,0.00006569087,0.00012504247,0.000043209573,0.0001703563,0.0000029091998,0.00016313142,0.00014523079,0.0000018376243],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014051412,0.00003231661,0.00071319926,0.000009232037,0.00006273861,0.0000010730874,0.000015138916,0.000016630427,0.9921583,0.00019740923,0.00006152078,0.0065919175],"study_design_scores_gemma":[0.00047592132,0.0021281752,0.02132785,0.00001799613,0.000040881227,0.00025187904,0.0000207801,0.000019242449,0.9295046,0.00029883676,0.04581468,0.00009919629],"about_ca_topic_score_codex":0.0000049456085,"about_ca_topic_score_gemma":0.0000062794775,"teacher_disagreement_score":0.06265375,"about_ca_system_score_codex":0.0000056312747,"about_ca_system_score_gemma":0.00004040639,"threshold_uncertainty_score":0.2678796},"labels":[],"label_agreement":null},{"id":"W2090329867","doi":"10.1016/j.jmb.2011.02.045","title":"DiaA/HobA and DnaA: A Pair of Proteins Co-evolved to Cooperate During Bacterial Orisome Assembly","year":2011,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nautical Research Society","funders":"","keywords":"DnaA; Biology; SeqA protein domain; Origin of replication; Cell biology; DNA; Escherichia coli; Heterologous; DNA replication; DNA-binding protein; Genetics; Biochemistry; Transcription factor; Gene","score_opus":0.011267310361711611,"score_gpt":0.24317726916139754,"score_spread":0.23190995879968593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090329867","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99745977,0.0004750074,0.0012090473,0.00020694398,0.00030192334,0.00023155652,0.000029988336,0.000005614373,0.00008015741],"genre_scores_gemma":[0.994165,0.00025349634,0.005171035,0.00011293309,0.00021936998,0.000007645652,0.000016360265,0.000024929994,0.000029222127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99865156,0.00014547596,0.0005388512,0.00028166926,0.000080213904,0.00030223804],"domain_scores_gemma":[0.9989473,0.0000062168156,0.00036420743,0.00027992474,0.00024943936,0.00015289163],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002838392,0.00020787958,0.00041730687,0.00015550354,0.000041787236,0.000011861187,0.0003093953,0.0004362795,0.000028467159],"category_scores_gemma":[0.00014503495,0.00017266639,0.00012569949,0.00011156867,0.0001686674,0.0000044915514,0.00020348249,0.00016158339,0.0000028141899],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075730006,0.00009942151,0.0020019,0.000020670948,0.00015891214,0.000032748176,0.000051193536,0.0000013995233,0.99558336,0.00010034461,0.00006330168,0.0011294588],"study_design_scores_gemma":[0.0010900556,0.0033885674,0.0071214056,0.000023196382,0.000036323047,0.00019097417,0.000027799135,0.0000011854968,0.98299265,0.00007823587,0.004856183,0.00019344057],"about_ca_topic_score_codex":0.000018090437,"about_ca_topic_score_gemma":0.000011765107,"teacher_disagreement_score":0.012590716,"about_ca_system_score_codex":0.000011665744,"about_ca_system_score_gemma":0.000105929925,"threshold_uncertainty_score":0.70411307},"labels":[],"label_agreement":null},{"id":"W2090476075","doi":"10.1016/j.bpj.2011.11.290","title":"Self-Organized Protein Localization and DNA Segregation Inside Bacterial Cells","year":2012,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Caulobacter crescentus; Cell division; Chromosome segregation; Biophysics; Phase (matter); Plasmid; DNA; Chromosome; Cell; Biological system; Biology; Chemistry; Chemical physics; Cell biology; Cell cycle; Genetics; Gene","score_opus":0.005282509340426098,"score_gpt":0.20273360151435116,"score_spread":0.19745109217392506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090476075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982913,0.000048161906,0.000919161,0.00014022423,0.00040331922,0.00013633817,0.0000045733605,0.000026214042,0.00003069839],"genre_scores_gemma":[0.99586916,0.00010600579,0.0021526134,0.000083202925,0.0017075355,0.0000037500663,0.000025066549,0.000025593858,0.000027082344],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927145,0.00006636348,0.00017795977,0.00015041378,0.00009293029,0.00024087571],"domain_scores_gemma":[0.99956053,0.0000029073822,0.00010788685,0.000120424775,0.00006854835,0.00013970194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110785986,0.00012855629,0.000120145975,0.000031793003,0.000089008114,0.00005921863,0.00008751659,0.00023397242,0.000013773725],"category_scores_gemma":[0.00002310735,0.00010825606,0.000044589327,0.00007224253,0.00006188727,0.000010143874,0.00008998554,0.000113652,0.000010249412],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006565107,0.0001007995,0.000111150825,0.000008415784,0.00002416956,8.533284e-7,0.000025834466,5.39025e-7,0.99822015,0.00016172939,0.00013989343,0.0011408421],"study_design_scores_gemma":[0.00052190694,0.0002471193,0.0007750877,0.000006358593,0.000019440644,0.000053735494,0.000009667424,0.00004459509,0.9704355,0.00006555328,0.027676996,0.00014403414],"about_ca_topic_score_codex":0.0000016944335,"about_ca_topic_score_gemma":8.967234e-7,"teacher_disagreement_score":0.027784616,"about_ca_system_score_codex":0.000013852025,"about_ca_system_score_gemma":0.000034799883,"threshold_uncertainty_score":0.44145542},"labels":[],"label_agreement":null},{"id":"W2091006988","doi":"10.1128/jb.00355-09","title":"CtrA, a Global Response Regulator, Uses a Distinct Second Category of Weak DNA Binding Sites for Cell Cycle Transcription Control in <i>Caulobacter crescentus</i>","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Caulobacter crescentus; Biology; Cell cycle; DNA replication; Transcription factor; Transcription (linguistics); DNA-binding protein; DNA; Cell biology; Molecular biology; Genetics; Cell; Gene","score_opus":0.006736966195678473,"score_gpt":0.22827694861241973,"score_spread":0.22153998241674125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091006988","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976767,0.00044405615,0.00044853694,0.00062209525,0.00033265573,0.00023580262,0.00019109926,0.0000048127645,0.000044299297],"genre_scores_gemma":[0.9988455,0.00009797078,0.0005146213,0.00022529096,0.00020913794,0.0000042220395,0.00004163068,0.000013274954,0.000048311027],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99834037,0.00022235946,0.00075754256,0.00025801457,0.00007710823,0.0003446327],"domain_scores_gemma":[0.9989553,0.000040952465,0.0005381785,0.00022161876,0.00015774499,0.000086224085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054983,0.00020921906,0.0005045054,0.00013309931,0.00003675234,0.00001809789,0.00026782986,0.00048471676,0.000027509912],"category_scores_gemma":[0.00010111446,0.00018470247,0.00024042622,0.000108405315,0.00013131884,0.0000120542345,0.000024912133,0.00015248416,9.716265e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007833505,0.00022025024,0.005524595,0.000028043112,0.000048535185,0.000007844658,0.00002400833,0.000005810883,0.98518723,0.00003103735,0.00031627622,0.0007728869],"study_design_scores_gemma":[0.0049032606,0.0057324753,0.25036103,0.000039732713,0.00006864929,0.00021259546,0.000057817775,0.000021667865,0.72310245,0.00038950023,0.014856682,0.00025411905],"about_ca_topic_score_codex":0.0000046033592,"about_ca_topic_score_gemma":0.00007277873,"teacher_disagreement_score":0.26208475,"about_ca_system_score_codex":0.000048861588,"about_ca_system_score_gemma":0.00014728123,"threshold_uncertainty_score":0.7531948},"labels":[],"label_agreement":null},{"id":"W2092247774","doi":"10.1016/j.virol.2012.09.020","title":"A fully decompressed synthetic bacteriophage øX174 genome assembled and archived in yeast","year":2012,"lang":"en","type":"article","venue":"Virology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Bacteriophage; Yeast; Genome; Computational biology; Genetics; Gene; Escherichia coli","score_opus":0.0065827934958095765,"score_gpt":0.2157991348014607,"score_spread":0.20921634130565114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092247774","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976114,0.0011774014,0.0001818276,0.00023037239,0.00019195772,0.0001632267,0.000015864394,0.000014320264,0.00041363784],"genre_scores_gemma":[0.99842095,0.00028334802,0.00067535246,0.0002591903,0.00019118872,0.000028255477,0.000041938016,0.000022291011,0.00007748774],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99885577,0.000107853135,0.00020442692,0.000322614,0.000040268238,0.00046907846],"domain_scores_gemma":[0.9995021,0.000012106425,0.00006219373,0.00030691968,0.000012890051,0.000103793354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015302237,0.00016832438,0.00022574308,0.00009896288,0.00003733194,0.000013100437,0.00017595531,0.00034237723,0.000046045574],"category_scores_gemma":[0.000034186854,0.00016096402,0.000040253453,0.000048887126,0.000120993966,0.0000033553213,0.00024429694,0.00013211952,0.00002293891],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013042997,0.00008495083,0.0037214663,0.000009047406,0.000021748781,0.0000061397386,0.000057548474,0.0000020800921,0.9941269,0.00008826103,0.000011514998,0.0017399067],"study_design_scores_gemma":[0.0011464388,0.0005120464,0.68360424,0.0000055431824,0.000021826723,0.00017067279,0.000023441395,0.0000352934,0.2647612,0.00012254332,0.04928036,0.00031641408],"about_ca_topic_score_codex":0.000015021367,"about_ca_topic_score_gemma":0.00008483703,"teacher_disagreement_score":0.7293657,"about_ca_system_score_codex":0.0000068950744,"about_ca_system_score_gemma":0.000021555687,"threshold_uncertainty_score":0.6563922},"labels":[],"label_agreement":null},{"id":"W2092407104","doi":"10.1006/bbrc.2000.2958","title":"Epsilon as an Initiator of Translation of CAT mRNA in Escherichia coli","year":2000,"lang":"en","type":"article","venue":"Biochemical and Biophysical Research Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Escherichia coli; Translation (biology); Messenger RNA; Chemistry; Molecular biology; Biology; Biochemistry; Gene","score_opus":0.05518507257999107,"score_gpt":0.35912161777940405,"score_spread":0.303936545199413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092407104","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99777627,0.000566846,0.000002852693,0.0007017621,0.000006146881,0.00016491063,0.000035766865,0.0000043307787,0.00074108836],"genre_scores_gemma":[0.99428135,0.003075339,0.0023897048,0.000024137387,0.000026534939,0.00002072441,0.00014113897,0.000008270867,0.000032815467],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904376,0.00016366944,0.0002480619,0.0002134268,0.00014632326,0.00018478563],"domain_scores_gemma":[0.99901944,0.00005264656,0.00003771594,0.00067949074,0.00012603501,0.00008469573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023885435,0.0000843518,0.00015447375,0.000060974166,0.000051154682,0.000008640331,0.0004724984,0.00023096908,0.000028128661],"category_scores_gemma":[0.00007734614,0.00007684513,0.000042879845,0.0003027475,0.0008454647,0.000004914651,0.00014281918,0.00017112361,0.0000036470897],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016011312,0.0004548399,0.00011328306,0.000019867775,0.000009862563,1.5315834e-7,0.000042703054,2.6732292e-7,0.9881716,0.0007381245,0.000027299126,0.010261881],"study_design_scores_gemma":[0.00033786026,0.0006465797,0.002937768,0.000022988383,0.00000557739,9.5261856e-7,0.000048054004,0.00024541977,0.9916179,0.00096810015,0.0030787908,0.00008997191],"about_ca_topic_score_codex":0.00022472633,"about_ca_topic_score_gemma":0.00003841032,"teacher_disagreement_score":0.010171909,"about_ca_system_score_codex":0.0000072333814,"about_ca_system_score_gemma":0.000079885926,"threshold_uncertainty_score":0.31336534},"labels":[],"label_agreement":null},{"id":"W2092499114","doi":"10.1186/1471-2164-9-167","title":"Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species","year":2008,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Université de Lausanne","keywords":"Biology; Genetics; Pseudomonas fluorescens; Gene; Transfer RNA; rpoS; Repressor; Small RNA; RNA; Gene expression; Bacteria; Promoter","score_opus":0.03307872974764918,"score_gpt":0.2270150000117224,"score_spread":0.19393627026407323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092499114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967914,0.0005922015,0.0012637104,0.00017328684,0.00014978496,0.00032290825,0.000046716264,0.000021216083,0.000638726],"genre_scores_gemma":[0.98624146,0.001149609,0.009581604,0.00018705687,0.0002909258,0.000014602536,0.00016629811,0.0000458906,0.0023225532],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998442,0.000048229962,0.0003841047,0.0005249621,0.00009659952,0.0005041046],"domain_scores_gemma":[0.99915403,0.000015984666,0.00008642439,0.0005608829,0.000081270686,0.00010138766],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002179495,0.00024057644,0.0002721287,0.00012685427,0.000092983144,0.000022866137,0.00043026,0.0004755219,0.000027274837],"category_scores_gemma":[0.0000632328,0.00024700788,0.00011045376,0.0001875612,0.00021514054,0.0000020690654,0.00035353535,0.00018368993,0.00003284161],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012187142,0.00009290126,0.0109415045,0.000014762432,0.000024651348,0.000010554439,0.00007415656,0.00030842895,0.98813945,0.00004346849,0.00008989245,0.00013836488],"study_design_scores_gemma":[0.0010687081,0.00021694448,0.17994595,0.000007118072,0.00000887976,0.00008359299,0.00006297366,0.000053980224,0.793545,0.00005875753,0.024584318,0.00036376537],"about_ca_topic_score_codex":0.000042314976,"about_ca_topic_score_gemma":0.00039877027,"teacher_disagreement_score":0.19459443,"about_ca_system_score_codex":0.000059383918,"about_ca_system_score_gemma":0.00021253289,"threshold_uncertainty_score":0.9999982},"labels":[],"label_agreement":null},{"id":"W2092674564","doi":"10.1038/nsmb.1819","title":"Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis","year":2010,"lang":"en","type":"article","venue":"Nature Structural & Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of British Columbia","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Canadian Light Source; Howard Hughes Medical Institute","keywords":"Teichoic acid; Peptidoglycan; Bacterial cell structure; Biochemistry; Polymerase; Cell envelope; Cell wall; Staphylococcus epidermidis; Bacterial outer membrane; Biology; Bacteria; Chemistry; Enzyme; Staphylococcus aureus; Gene; Escherichia coli","score_opus":0.0011513759844687034,"score_gpt":0.21894161601172438,"score_spread":0.21779024002725567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092674564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959742,0.0012143112,0.000015722662,0.0009924807,0.0014101315,0.00027860864,0.000082076775,0.000013874595,0.000018586314],"genre_scores_gemma":[0.9979037,0.00005159107,0.0008019655,0.00039738015,0.0003849572,0.0000054811144,0.00039749252,0.000023923636,0.00003353197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985822,0.00013754873,0.00031031168,0.0005379368,0.0001319218,0.00030010936],"domain_scores_gemma":[0.9988556,0.000011958016,0.00032166397,0.00057341036,0.00016518161,0.000072175266],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00007103555,0.0002927929,0.00031348472,0.00007960656,0.00013739233,0.000022610218,0.00046722792,0.0019632205,0.000032035903],"category_scores_gemma":[0.00037870198,0.00019343945,0.00014740745,0.00020294052,0.0003318664,0.0000058853743,0.00036897455,0.00073970854,4.5330492e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007642126,0.0000074825507,0.0023264221,0.000016724454,0.00013965201,0.0000010065407,0.00003776752,7.837385e-7,0.9946021,0.00093193026,0.00002817987,0.0018315464],"study_design_scores_gemma":[0.0005067738,0.00017558348,0.008141478,0.0000040763657,0.00007135228,0.000028164948,0.000010141007,0.0000069246594,0.984999,0.0016034669,0.004224487,0.00022852837],"about_ca_topic_score_codex":0.00007790403,"about_ca_topic_score_gemma":0.00069740857,"teacher_disagreement_score":0.00960306,"about_ca_system_score_codex":0.000016637623,"about_ca_system_score_gemma":0.000092903494,"threshold_uncertainty_score":0.9993324},"labels":[],"label_agreement":null},{"id":"W2092943387","doi":"10.1074/jbc.m008255200","title":"Purification and Characterization of WaaP from Escherichia coli, a Lipopolysaccharide Kinase Essential for Outer Membrane Stability","year":2001,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Escherichia coli; Salmonella enterica; Bacterial outer membrane; Biochemistry; Kinase; Biology; Mutant; Enzyme; Pseudomonas aeruginosa; Chemistry; Microbiology; Bacteria; Gene","score_opus":0.01534417712922965,"score_gpt":0.23469040343256553,"score_spread":0.2193462263033359,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092943387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972793,0.00018683093,0.0018704433,0.00032860384,0.000106846936,0.00011084492,0.00009871501,0.0000042096476,0.000014193385],"genre_scores_gemma":[0.9970063,0.00091705826,0.0013528443,0.000053440468,0.00045858114,0.0000058865744,0.00017525104,0.000007464332,0.000023168326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912614,0.000028902781,0.0004292312,0.00021396964,0.00006843506,0.000133335],"domain_scores_gemma":[0.99913967,0.000018637646,0.00041239153,0.0001702674,0.00018915096,0.0000699009],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018801827,0.00012211694,0.000244671,0.000014141966,0.000030043408,0.000015328491,0.00016595214,0.00040564142,0.000058745256],"category_scores_gemma":[0.0001452178,0.000093652816,0.00010395794,0.00004049414,0.00014337659,0.0000048458946,0.00006515034,0.00010186997,2.0541023e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006637274,0.00012410386,0.0015566834,0.000024637719,0.00004587678,0.0000018293872,0.000010360126,3.0225883e-7,0.9960297,0.000006574021,0.000007986771,0.0015282155],"study_design_scores_gemma":[0.0005814893,0.0003114924,0.0051133526,0.000011468367,0.00002938153,0.000016049544,0.000027417,0.000023924611,0.99153674,0.00008827224,0.0021547962,0.00010563302],"about_ca_topic_score_codex":0.0000043332057,"about_ca_topic_score_gemma":9.5145793e-7,"teacher_disagreement_score":0.0044929795,"about_ca_system_score_codex":0.000008770107,"about_ca_system_score_gemma":0.00004277468,"threshold_uncertainty_score":0.3819051},"labels":[],"label_agreement":null},{"id":"W2093012828","doi":"10.1099/mic.0.2006/003087-0","title":"Archaeal signal peptidases","year":2007,"lang":"en","type":"review","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Signal peptidase; Signal peptide; Archaea; Biology; Biochemistry; Enzyme; Secretion; Peptide sequence; Gene","score_opus":0.0306736264452925,"score_gpt":0.30440601553476854,"score_spread":0.27373238908947606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093012828","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003495839,0.9977555,0.00015198936,0.000016758751,0.0005103544,0.00040807255,0.00036612837,0.000032302247,0.00040925955],"genre_scores_gemma":[0.0000817659,0.993454,0.00062300346,0.00015280028,0.0010056917,0.000034243014,0.0034657829,0.00007513512,0.0011076175],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99780923,0.00014944933,0.00056280865,0.0008039729,0.000033085584,0.0006414374],"domain_scores_gemma":[0.99898595,0.000027417535,0.00025897758,0.0005831333,0.000055436743,0.000089096306],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00022299329,0.0005302753,0.0010822534,0.00019997409,0.000070324895,0.000016382784,0.0006208037,0.0021687383,0.00014100771],"category_scores_gemma":[0.000023861989,0.00043631243,0.0004992965,0.00014706381,0.0004026796,6.263375e-7,0.0005320553,0.00039987132,0.00021876617],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019868745,0.000051893774,0.0000017458067,0.0008357853,0.00019094974,0.000019349969,0.0000024661554,7.958415e-8,0.120891035,0.000057295172,0.0036894379,0.8742401],"study_design_scores_gemma":[0.00015872164,0.00035927497,5.3995274e-7,0.00033476535,0.00013608427,0.00071217114,0.0000024953374,4.3304183e-8,0.0067211664,0.000009104751,0.99109113,0.00047450312],"about_ca_topic_score_codex":0.000008244383,"about_ca_topic_score_gemma":0.000038593404,"teacher_disagreement_score":0.98740166,"about_ca_system_score_codex":0.00002687146,"about_ca_system_score_gemma":0.00022662294,"threshold_uncertainty_score":0.99980885},"labels":[],"label_agreement":null},{"id":"W2093021888","doi":"10.1007/s00284-009-9549-x","title":"Membrane Homeostasis Requires Intact pst in Extraintestinal Pathogenic Escherichia coli","year":2009,"lang":"en","type":"article","venue":"Current Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cegep de Saint Hyacinthe; Université de Montréal; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Escherichia coli; Virulence; Biology; Mutant; Bacterial outer membrane; Microbiology; Pathogenic Escherichia coli; Phenotype; Transporter; Homeostasis; Mutation; Biochemistry; Cell biology; Gene","score_opus":0.014296409990852552,"score_gpt":0.25771599308655424,"score_spread":0.2434195830957017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093021888","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939816,0.0041972864,0.00018877663,0.0005131907,0.0006290458,0.00024415422,0.00008826392,0.000030443884,0.00012722057],"genre_scores_gemma":[0.99663216,0.0014858816,0.0006929215,0.0003151241,0.0002603727,0.000013785889,0.0005375902,0.000018003851,0.00004414208],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998311,0.000117998105,0.000394836,0.0006012336,0.000033757304,0.00054119225],"domain_scores_gemma":[0.9993229,0.000011581051,0.00012614463,0.00040196703,0.000059288875,0.000078137746],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001881465,0.00027949695,0.0002962467,0.00012662963,0.00005359434,0.0000194933,0.00038717774,0.00042547274,0.000074859505],"category_scores_gemma":[0.00009401162,0.0002634659,0.00011610258,0.00019731633,0.0001975915,0.0000032206426,0.00014567401,0.00027918507,0.00004377263],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012845873,0.0001816081,0.00059108244,0.000011693697,0.000014327328,0.000007708113,0.00001730205,0.0000028948991,0.9633373,0.00014458748,0.00067942066,0.03488359],"study_design_scores_gemma":[0.0010483823,0.00110998,0.0075728158,0.000040218816,0.000019763267,0.00013363123,0.000021721666,0.000008813649,0.8475522,0.00015075803,0.14188369,0.00045804298],"about_ca_topic_score_codex":0.0000057590387,"about_ca_topic_score_gemma":0.00004798657,"teacher_disagreement_score":0.14120427,"about_ca_system_score_codex":0.000029788878,"about_ca_system_score_gemma":0.00009906388,"threshold_uncertainty_score":0.99998176},"labels":[],"label_agreement":null},{"id":"W2093668080","doi":"10.1128/aem.02793-13","title":"Synthetic Promoters Functional in Francisella novicida and Escherichia coli","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"TetR; Promoter; Francisella; Biology; Operon; Repressor; Plasmid; Molecular biology; Transcription (linguistics); lac operon; Reporter gene; Genetics; Gene; Escherichia coli; Transcription factor; Gene expression","score_opus":0.0024507933109038094,"score_gpt":0.14376416869102945,"score_spread":0.14131337538012564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093668080","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99886346,0.0004268225,0.000037407786,0.00017348141,0.00006305925,0.00025018735,0.000018877008,0.0000055635537,0.00016116198],"genre_scores_gemma":[0.9985355,0.00039078,0.00033350196,0.00042154544,0.000041023824,0.000046510766,0.00015517126,0.000012941788,0.00006302527],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992482,0.00001642903,0.00013621178,0.00037030037,0.000015590855,0.00021325552],"domain_scores_gemma":[0.9997857,0.0000052452997,0.00003390453,0.00012804699,0.0000017049147,0.000045392353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000437092,0.00014248131,0.00013326824,0.000030224252,0.000042180436,0.0000106317075,0.00005866586,0.000275719,0.000113767455],"category_scores_gemma":[0.0000018466075,0.00013024968,0.000016853872,0.00002351498,0.00031797824,0.0000016002564,0.00015239428,0.000088672175,0.000028023607],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024315286,0.00004392272,0.002508548,0.0000052995156,0.000013424492,4.905748e-7,0.00001499787,0.0000016195938,0.991304,0.00003888258,0.00008684584,0.0059576794],"study_design_scores_gemma":[0.0012087879,0.00033633973,0.09345413,0.000004995291,0.000012584099,0.000079889964,0.00019063413,0.000023162695,0.88289917,0.00025030412,0.021172121,0.0003679143],"about_ca_topic_score_codex":0.000020556901,"about_ca_topic_score_gemma":0.000010515063,"teacher_disagreement_score":0.10840484,"about_ca_system_score_codex":0.000008436698,"about_ca_system_score_gemma":0.0000057579205,"threshold_uncertainty_score":0.5311428},"labels":[],"label_agreement":null},{"id":"W2094069166","doi":"10.1007/s00239-004-2581-3","title":"Ectopic Gene Conversions in Four Escherichia coli Genomes: Increased Recombination in Pathogenic Strains","year":2004,"lang":"en","type":"article","venue":"Journal of Molecular Evolution","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Biology; Gene; Genetics; Genome; Gene conversion; Homologous recombination; Escherichia coli; Ectopic recombination; Recombination; Gene duplication; Origin of replication; Genetic recombination","score_opus":0.006768772369341192,"score_gpt":0.2129508962200272,"score_spread":0.206182123850686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094069166","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99403876,0.0013739878,0.003800826,0.00037377505,0.00020596344,0.0001500599,0.00000622428,0.0000034262946,0.000047001056],"genre_scores_gemma":[0.996987,0.00046536952,0.002344966,0.00009722976,0.000057509165,0.0000038359103,0.000022941049,0.000013361925,0.000007822355],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897057,0.00010457774,0.00040848102,0.0001803182,0.0001299094,0.00020611599],"domain_scores_gemma":[0.9994385,0.0000034229486,0.0002280616,0.00016485169,0.00011224746,0.00005289567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033025874,0.00012295708,0.00018301571,0.00023873548,0.000025707288,0.000011760248,0.00017506101,0.0002985335,0.0000069468265],"category_scores_gemma":[0.000094649535,0.00012599729,0.00010442162,0.0002482178,0.000044889668,0.0000071812397,0.000052728778,0.00020342869,0.000002362902],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006102684,0.00012719404,0.0022226216,0.000006544188,0.000022192395,0.000068995636,0.000019290688,0.00079426134,0.995766,0.00023278735,0.00000561759,0.0006735013],"study_design_scores_gemma":[0.0054136068,0.001174117,0.23511706,0.00006336029,0.00003506191,0.00013959895,0.000096510434,0.00010461174,0.753709,0.0030845376,0.0008010808,0.0002614372],"about_ca_topic_score_codex":0.000068593945,"about_ca_topic_score_gemma":0.00012884956,"teacher_disagreement_score":0.24205695,"about_ca_system_score_codex":0.000199018,"about_ca_system_score_gemma":0.0002896045,"threshold_uncertainty_score":0.51380205},"labels":[],"label_agreement":null},{"id":"W2094174868","doi":"10.1021/bi015611y","title":"Mutagenesis Identifies Amino Acid Residues in Extracellular Loops and within the Barrel Lumen That Determine Voltage Gating of Porin from <i>Haemophilus influenzae</i> Type b","year":2001,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Porin; Gating; Mutant; Periplasmic space; Bacterial outer membrane; Biophysics; Chemistry; Biochemistry; Alanine; Amino acid; Biology; Escherichia coli","score_opus":0.013014050133956108,"score_gpt":0.22625210571055845,"score_spread":0.21323805557660236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094174868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9915333,0.0079259435,0.000024837454,0.000116637624,0.00013745812,0.00013017155,0.000041478364,0.000013725812,0.000076482225],"genre_scores_gemma":[0.99798214,0.0008065178,0.00036633172,0.000078016135,0.00018918171,0.00001072253,0.00010893322,0.00002499024,0.00043317326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987904,0.00003464639,0.0003586026,0.0004488903,0.00012849494,0.00023899047],"domain_scores_gemma":[0.9990932,0.000019295137,0.00021022047,0.00055851677,0.00006069206,0.000058103324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020621816,0.00022345393,0.0002272667,0.00003287854,0.00006520537,0.000035936515,0.0003377406,0.00041481512,0.00001913681],"category_scores_gemma":[0.00011778546,0.00018742277,0.000053729815,0.00013810121,0.00027080585,0.0000051806173,0.00029383387,0.0001437367,0.0000019037044],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010678756,0.0000312008,0.026850937,0.000033540975,0.00003537611,0.00002506128,0.00006110573,0.0000037324069,0.9715143,0.0000030897766,0.00006395211,0.0012709297],"study_design_scores_gemma":[0.00040407208,0.00007699424,0.011065595,0.000044885557,0.000027342716,0.000040393596,0.00032135006,0.000030285,0.9869896,0.000110198875,0.00067525735,0.00021398229],"about_ca_topic_score_codex":0.00019077321,"about_ca_topic_score_gemma":0.00013744057,"teacher_disagreement_score":0.015785342,"about_ca_system_score_codex":0.000011272166,"about_ca_system_score_gemma":0.000055078435,"threshold_uncertainty_score":0.7642879},"labels":[],"label_agreement":null},{"id":"W2094335398","doi":"10.1074/jbc.m109385200","title":"X-ray Crystallographic Structures of the Escherichia coli Periplasmic Protein FhuD Bound to Hydroxamate-type Siderophores and the Antibiotic Albomycin","year":2002,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":153,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Basic Energy Sciences; National Center for Research Resources; Brookhaven National Laboratory; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Siderophore; Periplasmic space; Escherichia coli; Binding site; Biology; Bacteria; Chemistry; Biochemistry; Stereochemistry","score_opus":0.009936647152140838,"score_gpt":0.20498266525442674,"score_spread":0.1950460181022859,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094335398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964843,0.0020369473,0.000007292613,0.001025081,0.000118916985,0.00020023117,0.000009071973,0.0000038392404,0.000114327086],"genre_scores_gemma":[0.9983828,0.0007264992,0.0003885885,0.00020996791,0.00017600313,0.0000019566048,0.0000021693186,0.000010256962,0.00010177744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989128,0.00009640037,0.000422958,0.00021829345,0.0001319165,0.00021760855],"domain_scores_gemma":[0.9991141,0.000024994228,0.0003517764,0.00030068093,0.00012613514,0.000082343075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023820756,0.00018816968,0.00031993515,0.00002075289,0.000098925644,0.000035150777,0.00049161934,0.00039503712,0.00005736258],"category_scores_gemma":[0.0003391279,0.000090262365,0.00016428634,0.00017706705,0.00079981785,0.000002316059,0.00025401986,0.00028344282,5.077308e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030859266,0.000045470628,0.0011229011,0.000027101507,0.000075316464,0.0000030592043,0.00001984138,0.000019904086,0.9979371,0.000021867347,0.00021955959,0.00019927573],"study_design_scores_gemma":[0.00076440274,0.00052823394,0.0060648797,0.000032157106,0.000029687935,0.00008397168,0.00008449057,0.000019424464,0.9885911,0.00032603226,0.0033378657,0.00013777612],"about_ca_topic_score_codex":0.0000067705614,"about_ca_topic_score_gemma":0.0000025064405,"teacher_disagreement_score":0.0093460325,"about_ca_system_score_codex":0.000007722841,"about_ca_system_score_gemma":0.000030935502,"threshold_uncertainty_score":0.36807925},"labels":[],"label_agreement":null},{"id":"W2094483672","doi":"10.1107/s1744309105007657","title":"MraZ from<i>Escherichia coli</i>: cloning, purification, crystallization and preliminary X-ray analysis","year":2005,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology and Crystallization Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Escherichia coli; Cloning (programming); Gene; Biology; Function (biology); Molecular cloning; Gene cluster; Bacteria; Cell division; Genetics; Molecular biology; Biochemistry; Cell; Peptide sequence","score_opus":0.008508270993130854,"score_gpt":0.24438697072783047,"score_spread":0.2358786997346996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094483672","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9757026,0.002509495,0.018097997,0.0027574326,0.0001191358,0.00039134943,0.00015568653,0.000099903606,0.00016639092],"genre_scores_gemma":[0.97652394,0.0076148664,0.010568011,0.00040183822,0.00021138474,0.00006966813,0.00450503,0.000027492764,0.00007777014],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981413,0.00028696292,0.0005196151,0.0006727235,0.00009463615,0.000284748],"domain_scores_gemma":[0.99821347,0.000059570884,0.00033132665,0.0010076013,0.00025450916,0.00013351561],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018760526,0.00031010073,0.00030190515,0.00033424728,0.0007163961,0.00010624499,0.00045588956,0.00068462227,0.000063358784],"category_scores_gemma":[0.000085115746,0.0003081234,0.0001139278,0.00083691,0.00072747166,0.000041510168,0.0003997573,0.00025789934,3.0584795e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009353113,0.00004758153,0.016841205,0.000007826758,0.00047418967,1.088308e-7,0.00012761887,0.00018494594,0.97952604,0.0012883677,0.00011556084,0.0012930393],"study_design_scores_gemma":[0.001772769,0.0010500354,0.43851718,0.000024609159,0.0012490699,0.000025993453,0.00048600152,0.011450433,0.010860889,0.003291135,0.5299467,0.0013252163],"about_ca_topic_score_codex":0.00010394642,"about_ca_topic_score_gemma":0.00077003037,"teacher_disagreement_score":0.9686651,"about_ca_system_score_codex":0.000018613382,"about_ca_system_score_gemma":0.000042652562,"threshold_uncertainty_score":0.99993706},"labels":[],"label_agreement":null},{"id":"W2094927499","doi":"10.1371/journal.ppat.1003307","title":"A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly","year":2013,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Center for Research Resources; National Institute of General Medical Sciences; British Columbia Knowledge Development Fund; Canadian Institutes of Health Research; Killam Trusts; National Institutes of Health; Canadian Light Source; Howard Hughes Medical Institute","keywords":"Effector; Biology; Cell biology; Cytosol; Virulence; Basal body; Docking (animal); Biophysics; Flagellum; Bacteria; Biochemistry; Genetics; Enzyme; Gene","score_opus":0.017884362616587008,"score_gpt":0.23131906206871736,"score_spread":0.21343469945213034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094927499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939712,0.00017705187,0.0009975865,0.0024274287,0.00008129997,0.0019508246,0.00017355544,0.000013358205,0.00020767013],"genre_scores_gemma":[0.9955498,0.00005045044,0.0025585457,0.00064643106,0.000119858145,0.00066772994,0.00002526819,0.000039420498,0.00034250272],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987081,0.00008901628,0.00032113062,0.00038100002,0.00015778613,0.00034295025],"domain_scores_gemma":[0.9987674,0.00002053717,0.00015623905,0.00075145985,0.0002438248,0.000060578895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017450015,0.00020304281,0.00022325676,0.000025001576,0.000105118794,0.000024432115,0.0005504433,0.0003783994,0.000014759308],"category_scores_gemma":[0.00028438342,0.00012124965,0.00022313607,0.00011022494,0.00012268477,0.000002577508,0.00027348628,0.00012378705,0.000008488001],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058974263,0.00010714315,0.00012915178,0.000036418613,0.000070143964,3.7946194e-7,0.000012859396,0.0000499899,0.9981651,0.00053886086,0.0005903565,0.0002406364],"study_design_scores_gemma":[0.0002999375,0.00032363494,0.0010676289,0.00001976523,0.00006814553,0.0000033311774,0.000013142334,0.0041727624,0.99212587,0.0006526407,0.0010809907,0.00017215393],"about_ca_topic_score_codex":0.0000032406392,"about_ca_topic_score_gemma":0.000004350703,"teacher_disagreement_score":0.006039219,"about_ca_system_score_codex":0.000009871815,"about_ca_system_score_gemma":0.00008577644,"threshold_uncertainty_score":0.49444172},"labels":[],"label_agreement":null},{"id":"W2095209497","doi":"10.1002/prot.21199","title":"NMR structure and binding studies confirm that PA4608 from <i>Pseudomonas aeruginosa</i> is a PilZ domain and a c‐di‐GMP binding protein","year":2006,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; University of Wyoming","keywords":"Guanosine; Biochemistry; Signal transducing adaptor protein; Binding protein; Binding site; Protein structure; Guanosine monophosphate; Chemistry; Binding domain; Biology; Stereochemistry; Nucleotide; Receptor","score_opus":0.008744382100391447,"score_gpt":0.20768437333307796,"score_spread":0.19893999123268652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095209497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953166,0.00175012,0.0007351205,0.00047824517,0.00020751552,0.00088369584,0.0005233128,0.000045110803,0.000060233786],"genre_scores_gemma":[0.9856164,0.0005009664,0.012803098,0.0002568211,0.00027961898,0.000026909483,0.00036557516,0.000027184422,0.0001234677],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985638,0.000037141774,0.00040299635,0.0004409664,0.00018718177,0.00036787018],"domain_scores_gemma":[0.999233,0.000011907896,0.0002855482,0.00028370423,0.00008268213,0.00010317698],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009977118,0.00041664726,0.00036538037,0.00013269915,0.00035156377,0.00018769316,0.0001132052,0.0005730728,0.000021989064],"category_scores_gemma":[0.000026697056,0.0003233855,0.000049881237,0.0001408688,0.0003574464,0.000028284436,0.00028541393,0.0002569092,0.0000013251769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015283149,0.000012457896,0.0030072443,0.0001676598,0.00014555515,0.0000017851996,0.00022525102,9.017664e-7,0.98688245,0.00032994206,0.0002855106,0.008788392],"study_design_scores_gemma":[0.0024715678,0.00084323215,0.0033681325,0.00013803705,0.00012804833,0.0001283061,0.001569108,0.00016217477,0.9575371,0.0053704726,0.027454171,0.00082964275],"about_ca_topic_score_codex":0.000054874854,"about_ca_topic_score_gemma":0.00017074164,"teacher_disagreement_score":0.029345363,"about_ca_system_score_codex":0.000018381877,"about_ca_system_score_gemma":0.000037252565,"threshold_uncertainty_score":0.9999218},"labels":[],"label_agreement":null},{"id":"W2095357317","doi":"10.1099/mic.0.021543-0","title":"The ATPase activity of an ‘essential’ Bacillus subtilis enzyme, YdiB, is required for its cellular function and is modulated by oligomerization","year":2009,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Bacillus subtilis; Mutant; Escherichia coli; ATPase; Biochemistry; Enzyme; Monomer; Biology; Oligomer; Chemistry; Gene; Bacteria; Genetics","score_opus":0.006076649022478289,"score_gpt":0.21057365021846122,"score_spread":0.20449700119598294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095357317","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947026,0.001257515,0.0023088895,0.00082641834,0.00019623665,0.00031287695,0.0003717349,0.000013551141,0.0000101878295],"genre_scores_gemma":[0.99785894,0.000581164,0.00012438047,0.00036209193,0.000085837186,0.000009915293,0.0007191162,0.000014045937,0.00024449892],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902225,0.0000695735,0.0002179187,0.00040815727,0.000025057887,0.0002570258],"domain_scores_gemma":[0.9993553,0.000009473241,0.00015574973,0.00032018436,0.000116770585,0.00004248071],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000108493325,0.00016503838,0.00018804656,0.000034145443,0.00013769063,0.000017807606,0.000154527,0.0005108106,0.000011818275],"category_scores_gemma":[0.000023819148,0.00013485452,0.000062333565,0.0000837068,0.00016368099,0.0000056048734,0.00005827515,0.000058923957,0.0000013966817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041732044,0.00007104956,0.000011981848,0.000009397385,0.000045776163,1.6472526e-7,0.000017712475,0.0000015435417,0.9895053,0.000027891509,0.0009932456,0.008898617],"study_design_scores_gemma":[0.00064596365,0.0012639646,0.00023213145,0.000002617757,0.000032487515,0.000006832065,0.000008792726,0.00018845157,0.9562292,0.0001008228,0.04114298,0.00014575044],"about_ca_topic_score_codex":0.000011301878,"about_ca_topic_score_gemma":0.000013057765,"teacher_disagreement_score":0.040149737,"about_ca_system_score_codex":0.0000072869834,"about_ca_system_score_gemma":0.000026577916,"threshold_uncertainty_score":0.5499208},"labels":[],"label_agreement":null},{"id":"W2095459267","doi":"10.1371/journal.pgen.1004770","title":"A Functional Portrait of Med7 and the Mediator Complex in Candida albicans","year":2014,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Concordia University; National Research Council Canada; Biotechnology Research Institute; University of British Columbia; McGill University","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Genome Canada; Canadian Institutes of Health Research; National Institutes of Health; Fonds Québécois de la Recherche sur la Nature et les Technologies; Concordia University","keywords":"Biology; Candida albicans; Gene; Mediator; Protein subunit; Genetics; Saccharomyces cerevisiae; Corpus albicans; Cell biology","score_opus":0.01192177274490759,"score_gpt":0.20187859069792669,"score_spread":0.1899568179530191,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095459267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99782944,0.000551673,0.0000947466,0.00082996563,0.00008376057,0.00015409425,0.000023112772,0.0000042991574,0.00042890664],"genre_scores_gemma":[0.9985812,0.00038991004,0.00047853938,0.00025601918,0.00016475713,0.000015118625,0.000050445637,0.000012431794,0.000051633662],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992361,0.000064621134,0.00022751866,0.00020425994,0.000105718806,0.0001617542],"domain_scores_gemma":[0.99954844,0.000025581097,0.000081425555,0.00025095348,0.000049482656,0.000044098706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001737909,0.00010688309,0.00017631908,0.00003669196,0.000029875244,0.000007841074,0.00014536937,0.0001645135,0.000040681498],"category_scores_gemma":[0.00007436311,0.0000780152,0.000038016387,0.000069480775,0.00037200737,5.8695116e-7,0.00012108315,0.000075217016,0.0000014570693],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001274342,0.000051226805,0.0055854316,0.000016094295,0.00003972558,3.5167332e-7,0.000039024624,0.000021483358,0.9913222,0.0009317412,0.00034434372,0.0015209079],"study_design_scores_gemma":[0.0038198552,0.00051385997,0.03850495,0.0000142451845,0.00006833754,0.000020692776,0.000083200284,0.0022358082,0.908884,0.0012424288,0.04432425,0.00028837402],"about_ca_topic_score_codex":0.00001515362,"about_ca_topic_score_gemma":0.0002930711,"teacher_disagreement_score":0.08243824,"about_ca_system_score_codex":0.0000037592797,"about_ca_system_score_gemma":0.00004449672,"threshold_uncertainty_score":0.31813675},"labels":[],"label_agreement":null},{"id":"W2095836360","doi":"10.1128/jb.00105-13","title":"The Escherichia coli Cpx Envelope Stress Response Regulates Genes of Diverse Function That Impact Antibiotic Resistance and Membrane Integrity","year":2013,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":191,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Directorate for Biological Sciences","keywords":"Biology; Regulon; Cell envelope; Bacterial outer membrane; Gene; Transcriptome; Escherichia coli; Virulence; Genetics; Membrane protein; Cell biology; Phenotype; Gene expression; Microbiology","score_opus":0.01026628253011162,"score_gpt":0.2300766972710246,"score_spread":0.21981041474091298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095836360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996457,0.0021851,0.000039997445,0.0007277298,0.00041644514,0.00013195837,0.00002157542,0.0000034326831,0.00001678121],"genre_scores_gemma":[0.995558,0.0035465253,0.00052776694,0.000047628455,0.00013879285,0.0000015060807,0.000009071386,0.000012588909,0.0001580966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987893,0.00031198794,0.00040692702,0.0001830433,0.00008235401,0.00022638949],"domain_scores_gemma":[0.99874943,0.000084084655,0.00054735766,0.00027366195,0.0002674282,0.00007801755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005351935,0.00016700295,0.00031786528,0.000067304434,0.000101806625,0.00003788792,0.00026328038,0.0003629881,0.000029289213],"category_scores_gemma":[0.00019472344,0.000103299346,0.00011540944,0.000077547804,0.00044605054,0.000011977362,0.00015251453,0.00021931196,0.0000016997537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002786448,0.000034009066,0.009765505,0.000017440349,0.0001609638,0.0000028388363,0.000022312503,0.0000034851062,0.98392797,0.000018200479,0.00029844765,0.0029623879],"study_design_scores_gemma":[0.0004647653,0.001230161,0.41737336,0.00002776274,0.000036264304,0.000051506762,0.00015665752,0.0000054669918,0.5749196,0.000092784074,0.0055369227,0.000104749946],"about_ca_topic_score_codex":0.000038912054,"about_ca_topic_score_gemma":0.000064532265,"teacher_disagreement_score":0.40900835,"about_ca_system_score_codex":0.000017187811,"about_ca_system_score_gemma":0.000114314906,"threshold_uncertainty_score":0.42124254},"labels":[],"label_agreement":null},{"id":"W2095966832","doi":"10.1128/jb.02449-14","title":"The Cpx Envelope Stress Response Modifies Peptidoglycan Cross-Linking via the l,d-Transpeptidase LdtD and the Novel Protein YgaU","year":2014,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Biology; Peptidoglycan; Cell envelope; Periplasmic space; Gene; Regulon; Escherichia coli; Cell biology; Molecular biology; Biochemistry","score_opus":0.007695869457210636,"score_gpt":0.2328048596188525,"score_spread":0.22510899016164188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095966832","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891691,0.0006450212,0.0023858221,0.007075487,0.00041376895,0.00025306855,0.00001487096,0.0000053201893,0.00003752197],"genre_scores_gemma":[0.9979017,0.0004036665,0.00040692784,0.00035557488,0.00065790344,0.000016296786,0.0000067019323,0.000021526661,0.00022972426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998055,0.0006131983,0.0006207009,0.00023624109,0.00012883302,0.00034607464],"domain_scores_gemma":[0.99842614,0.0002539776,0.00055236934,0.00048683697,0.00021290137,0.000067787885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002302711,0.00021918026,0.00032517145,0.000044600685,0.00047122716,0.00014666164,0.00074947975,0.00034796842,0.0000067324067],"category_scores_gemma":[0.0004756661,0.00009919801,0.00016067276,0.00007312833,0.0016168036,0.0000072218327,0.00023996342,0.0004487494,0.000001966147],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00424035,0.000028567714,0.0005919903,0.000008876197,0.000118130185,0.0000022682611,0.00016538386,0.000040606123,0.9875212,0.00044121256,0.000028474955,0.0068129417],"study_design_scores_gemma":[0.00597808,0.002997296,0.07070636,0.000093983814,0.00012359007,0.0010468406,0.00037733564,0.00036315707,0.7413504,0.0013952107,0.17507073,0.00049698714],"about_ca_topic_score_codex":0.00001996467,"about_ca_topic_score_gemma":0.00009671631,"teacher_disagreement_score":0.24617077,"about_ca_system_score_codex":0.000012673876,"about_ca_system_score_gemma":0.00010266945,"threshold_uncertainty_score":0.595718},"labels":[],"label_agreement":null},{"id":"W2096230667","doi":"10.1139/cjm-2015-0345","title":"Prokaryotic 2-component systems and the OmpR/PhoB superfamily","year":2015,"lang":"en","type":"review","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Research Foundation of Korea; National Research Foundation","keywords":"Histidine kinase; Response regulator; Two-component regulatory system; Biology; Computational biology; SUPERFAMILY; Signal transduction; Bacteria; Gene; Component (thermodynamics); Bacterial protein; Cell biology; Genetics","score_opus":0.019962398050604423,"score_gpt":0.23534556913560176,"score_spread":0.21538317108499733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096230667","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0037488313,0.9934913,0.000007935487,0.00017059177,0.0018636287,0.0004744849,0.00016672489,0.0000019865306,0.00007450486],"genre_scores_gemma":[0.0026649314,0.9960219,0.000053709824,0.000101504935,0.0007247444,0.000011064856,0.00014896005,0.00003948127,0.00023367598],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99808985,0.00044424893,0.00073265523,0.0002856519,0.000036799585,0.0004108055],"domain_scores_gemma":[0.9985184,0.000029497147,0.00052797404,0.00037452515,0.00022585271,0.00032373503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007960881,0.00034133773,0.0013166018,0.00021310293,0.00009131308,0.000057458907,0.0006600501,0.0009715718,0.000007618464],"category_scores_gemma":[0.00009153262,0.0002030161,0.0002830562,0.00009524822,0.00080252247,0.0000016835065,0.000099688754,0.00047149195,0.000011670015],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004469003,0.00009783385,0.00007198479,0.007638149,0.0048569553,0.00061654166,0.00027861632,0.000017272974,0.067530535,0.001965964,0.11521261,0.8012666],"study_design_scores_gemma":[0.00064156286,0.00031196044,0.0000016411748,0.0005519398,0.00032821324,0.007092766,0.000028393037,4.2722965e-7,0.000077289515,0.000015966449,0.99072814,0.00022167325],"about_ca_topic_score_codex":0.00058842957,"about_ca_topic_score_gemma":0.0012342094,"teacher_disagreement_score":0.8755156,"about_ca_system_score_codex":0.000072615745,"about_ca_system_score_gemma":0.0025538485,"threshold_uncertainty_score":0.8278756},"labels":[],"label_agreement":null},{"id":"W2096476495","doi":"10.1128/jb.182.2.488-497.2000","title":"The <i>rfaE</i> Gene from <i>Escherichia coli</i> Encodes a Bifunctional Protein Involved in Biosynthesis of the Lipopolysaccharide Core Precursor ADP- <scp>l</scp> - <i>glycero</i> - <scp>d</scp> - <i>manno</i> -Heptose","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Medical Research Council Canada","keywords":"Biology; Biosynthesis; Escherichia coli; Gene; Lipopolysaccharide; Bifunctional; Phosphofructokinase 2; Molecular biology; Biochemistry; Immunology","score_opus":0.009755282436010955,"score_gpt":0.20757662349964756,"score_spread":0.1978213410636366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096476495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99500245,0.00251387,0.00004193112,0.0005469564,0.00088778924,0.00052267517,0.00024407612,0.0000144526375,0.00022581946],"genre_scores_gemma":[0.9926016,0.003413918,0.001160959,0.0009165057,0.0008599365,0.0000544134,0.00005476011,0.00006539475,0.000872544],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9966392,0.0004693987,0.0013384289,0.00054357736,0.00031634208,0.0006930754],"domain_scores_gemma":[0.9971763,0.00041164143,0.0011689462,0.0007937857,0.0002834234,0.00016591715],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007164211,0.00047622423,0.0007501078,0.00011791485,0.00022658646,0.00006583898,0.0013549142,0.00090360275,0.000042430787],"category_scores_gemma":[0.00087858277,0.00031134128,0.00044848045,0.0003449135,0.00082647486,0.000023558063,0.00032587213,0.00071801443,0.000014112158],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029521983,0.00024133034,0.003991786,0.00001851893,0.00026352305,0.000009910447,0.000106604035,0.00003221186,0.99035746,0.000052523643,0.0027164845,0.0019144116],"study_design_scores_gemma":[0.0011243351,0.0009882991,0.0067105135,0.00008346872,0.000085176696,0.00006631438,0.0001869731,0.000020341344,0.79210657,0.0005256494,0.19800429,0.000098078286],"about_ca_topic_score_codex":0.00011667647,"about_ca_topic_score_gemma":0.00033178728,"teacher_disagreement_score":0.19825092,"about_ca_system_score_codex":0.000052482686,"about_ca_system_score_gemma":0.00047148168,"threshold_uncertainty_score":0.99993384},"labels":[],"label_agreement":null},{"id":"W2096665650","doi":"10.1128/jb.187.9.3002-3012.2005","title":"Functional Characterization of WaaL, a Ligase Associated with Linking O-Antigen Polysaccharide to the Core of <i>Pseudomonas aeruginosa</i> Lipopolysaccharide","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":154,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Mutant; Pseudomonas aeruginosa; DNA ligase; Antigen; Molecular biology; Microbiology; Biochemistry; Gene; Bacteria; Genetics","score_opus":0.013047573420075861,"score_gpt":0.22389819439891398,"score_spread":0.2108506209788381,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096665650","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964745,0.00014591396,0.0011066179,0.0016596584,0.00037149768,0.00015889821,0.00006613643,0.000004967453,0.000011797074],"genre_scores_gemma":[0.99769,0.00029601844,0.0006926507,0.0005152634,0.000648824,0.0000045840047,0.0000742238,0.000022060816,0.000056350822],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985213,0.000088576664,0.000756679,0.00020904551,0.00017506474,0.00024933266],"domain_scores_gemma":[0.9980115,0.00003301055,0.0011005271,0.00029143036,0.0004815626,0.00008195429],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043788273,0.00018871979,0.00044016237,0.00015275106,0.00005945207,0.000012355176,0.00037217306,0.00032577247,0.00003615141],"category_scores_gemma":[0.00014631994,0.00012741635,0.0001520182,0.00016591011,0.00017476201,0.000011033096,0.00013558354,0.00021607308,0.0000025717356],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067228434,0.0001196845,0.006457148,0.000007874382,0.00022940572,0.0000034232357,0.0000672258,0.00008417477,0.989493,0.0000583209,0.00012619497,0.0026812474],"study_design_scores_gemma":[0.0007065461,0.0017636791,0.057664823,0.00007577166,0.000070048765,0.00019080027,0.000029764538,0.000018681485,0.9325362,0.00001592336,0.006781713,0.00014606402],"about_ca_topic_score_codex":0.000011942379,"about_ca_topic_score_gemma":0.00006507386,"teacher_disagreement_score":0.05695683,"about_ca_system_score_codex":0.000022228287,"about_ca_system_score_gemma":0.0002053824,"threshold_uncertainty_score":0.5195888},"labels":[],"label_agreement":null},{"id":"W2096769332","doi":"10.1002/pro.2602","title":"Asymmetric mutations in the tetrameric R67 dihydrofolate reductase reveal high tolerance to active‐site substitutions","year":2014,"lang":"en","type":"article","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; PROTEO; Centre in Green Chemistry and Catalysis","funders":"Natural Sciences and Engineering Research Council of Canada; Concordia University; Deutscher Akademischer Austauschdienst","keywords":"Dihydrofolate reductase; Active site; Tetramer; Enzyme kinetics; Thermostability; Enzyme; Allosteric regulation; Stereochemistry; Biology; Biochemistry; Chemistry; Protein structure","score_opus":0.00721370886581812,"score_gpt":0.24639500689718244,"score_spread":0.23918129803136431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096769332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99505687,0.000072320996,0.0019463127,0.0017688124,0.00014515342,0.0004877903,0.000020402143,0.000011777145,0.0004905544],"genre_scores_gemma":[0.9949128,0.000014489155,0.0043970407,0.00034432326,0.000104039544,0.000115971714,0.00001607513,0.000006110464,0.000089171146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987773,0.000070406975,0.00016923838,0.0004520464,0.00019041325,0.00034061848],"domain_scores_gemma":[0.999294,0.000011979117,0.000061869825,0.00047516488,0.000083820945,0.00007317932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005464502,0.00011386033,0.00009905334,0.00019401003,0.00024988633,0.00006879676,0.0006238949,0.00008757144,0.0000038199446],"category_scores_gemma":[0.0004764855,0.00008712626,0.000029658588,0.0018143497,0.00047925388,0.000009931073,0.00013701527,0.00013261933,0.000028970417],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017593251,0.000040701958,0.000091340604,0.000002598603,0.0000014772086,9.344845e-7,0.000051421724,0.000117066964,0.98790145,0.0009520239,0.000035133697,0.010788251],"study_design_scores_gemma":[0.00021121412,0.00038483235,0.01946227,0.0000135703385,0.0000047687304,0.00001451099,0.000029859304,0.0001439391,0.9635889,0.0005848199,0.015376303,0.00018503837],"about_ca_topic_score_codex":0.00011048632,"about_ca_topic_score_gemma":0.00006189947,"teacher_disagreement_score":0.024312584,"about_ca_system_score_codex":0.000022078459,"about_ca_system_score_gemma":0.000108943954,"threshold_uncertainty_score":0.3552906},"labels":[],"label_agreement":null},{"id":"W2096771777","doi":"10.1128/jb.00032-11","title":"Evidence that WapB Is a 1,2-Glucosyltransferase of Pseudomonas aeruginosa Involved in Lipopolysaccharide Outer Core Biosynthesis","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; University of Guelph","funders":"Canada Research Chairs; Cystic Fibrosis Canada","keywords":"Mutant; Biology; Complementation; Bacterial outer membrane; Pseudomonas aeruginosa; Heptose; Lipid A; Virulence; Lipopolysaccharide; Glucosyltransferase; Microbiology; Glycosyltransferase; Gene; Biochemistry; Bacteria; Escherichia coli; Genetics","score_opus":0.05505407215000799,"score_gpt":0.25534975868995985,"score_spread":0.20029568653995186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096771777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99719465,0.0012566161,0.00036389937,0.00053131947,0.00046838977,0.00012435539,0.000025373873,0.0000042439624,0.00003117763],"genre_scores_gemma":[0.99136376,0.0040237247,0.003949518,0.00044612103,0.00016817995,0.000004365477,0.0000043130262,0.000021296351,0.000018704144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998337,0.00011749109,0.0008030185,0.00029824066,0.00011973554,0.00032455515],"domain_scores_gemma":[0.99859226,0.00003993374,0.0006389006,0.00039575016,0.00023088053,0.000102295104],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046888815,0.00023447855,0.00056603213,0.00020144517,0.000023508335,0.000008490544,0.00054344814,0.0005507396,0.00018175547],"category_scores_gemma":[0.00022993064,0.00019167039,0.00024154087,0.00010332705,0.00027405474,0.00001388141,0.00013523837,0.00025987302,0.000004647724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00087144814,0.00011918002,0.03822292,0.00002707237,0.000104528954,0.000047831974,0.0001778208,4.4683713e-7,0.954968,0.000057809608,0.000118406046,0.005284561],"study_design_scores_gemma":[0.0006296138,0.0014737388,0.034273382,0.00016439806,0.0000497988,0.00022408823,0.00009737414,0.0000045528504,0.9614603,0.00028821404,0.0011366272,0.00019792162],"about_ca_topic_score_codex":0.000098524215,"about_ca_topic_score_gemma":0.00012799389,"teacher_disagreement_score":0.0064923135,"about_ca_system_score_codex":0.000021017073,"about_ca_system_score_gemma":0.00015623106,"threshold_uncertainty_score":0.7816091},"labels":[],"label_agreement":null},{"id":"W2096872683","doi":"10.1074/jbc.m506708200","title":"Siderophore Transport through Escherichia coli Outer Membrane Receptor FhuA with Disulfide-tethered Cork and Barrel Domains","year":2005,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Cysteine; Chemistry; Siderophore; Biochemistry; Mutant; Escherichia coli; Biophysics; Biology; Enzyme","score_opus":0.010375987194532225,"score_gpt":0.2210782023061188,"score_spread":0.21070221511158657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096872683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99684834,0.0012940799,0.00029057037,0.00096646463,0.000083755316,0.00009086663,0.00003347141,0.0000112071275,0.00038126038],"genre_scores_gemma":[0.98851764,0.0019103602,0.008115485,0.0004683913,0.00075798406,0.000004295833,0.000037959788,0.000020664222,0.00016719286],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998758,0.000034541194,0.0004531822,0.0003283681,0.00013179824,0.00029407],"domain_scores_gemma":[0.99918306,0.000017783683,0.00029620258,0.00023219225,0.00011828518,0.00015247523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016199882,0.0002598852,0.0003838181,0.000012370489,0.00006656051,0.000020832595,0.00027487203,0.00064417085,0.00015603319],"category_scores_gemma":[0.00004962572,0.00016505588,0.00013333777,0.00007980187,0.00036608972,0.000006724052,0.00006919836,0.00033315466,0.000002565302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073182926,0.0001198723,0.0023442558,0.0000212543,0.00011434433,0.000023787472,0.000026965465,0.000009956896,0.99539685,0.0000072179178,0.00029675604,0.0009069187],"study_design_scores_gemma":[0.001170631,0.0007979225,0.0018966408,0.000029834157,0.000037481805,0.00025170582,0.00009138306,0.0000023378636,0.9019986,0.000042492095,0.09343197,0.0002490152],"about_ca_topic_score_codex":0.0000025926613,"about_ca_topic_score_gemma":0.0000043807872,"teacher_disagreement_score":0.09339826,"about_ca_system_score_codex":0.000017564369,"about_ca_system_score_gemma":0.00006916422,"threshold_uncertainty_score":0.67307836},"labels":[],"label_agreement":null},{"id":"W2096926750","doi":"10.1073/pnas.1102544108","title":"Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins","year":2011,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":253,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Key Research and Development Program of China; Canadian Institutes of Health Research","keywords":"Biology; DNA; Genetics; DNA-binding protein; Gene silencing; Netropsin; DNA binding site; Nucleoid; Binding site; Molecular biology; Gene; Escherichia coli; Transcription factor; Gene expression","score_opus":0.0426076317305096,"score_gpt":0.2638804712278697,"score_spread":0.22127283949736007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096926750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99892956,0.00012360117,0.0000018036942,0.00020445696,0.00001835077,0.00023660167,0.000097295044,0.0000029954322,0.00038536318],"genre_scores_gemma":[0.9968933,0.00004974163,0.002909676,0.000043319775,0.0000339408,0.000014015716,0.0000024289125,0.0000039233078,0.00004964924],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992329,0.0000038793814,0.00023979967,0.00019472538,0.00021699631,0.000111729285],"domain_scores_gemma":[0.9993322,0.000010314158,0.00036627598,0.000009287621,0.00026556998,0.000016392023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035200678,0.00007208504,0.00010010275,0.000056196062,0.00009250377,0.0000034276513,0.00037600336,0.00018900663,0.000012426674],"category_scores_gemma":[0.00020417257,0.000050604656,0.0000571716,0.00021451422,0.00042143647,0.00000911827,0.00009999752,0.000047354184,1.9285201e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000464566,0.000015134098,0.00071070495,0.000032665484,0.000017804678,4.257796e-10,0.000050107472,0.000001044646,0.998201,0.0002642556,0.00014369938,0.0005170976],"study_design_scores_gemma":[0.00014050915,0.00023028678,0.006432205,0.000026071753,0.000013246536,0.0000029908815,0.00004503244,0.000043984248,0.9882606,0.0046675964,0.00007349244,0.00006392957],"about_ca_topic_score_codex":0.000005352281,"about_ca_topic_score_gemma":2.1894506e-7,"teacher_disagreement_score":0.009940375,"about_ca_system_score_codex":0.000010422558,"about_ca_system_score_gemma":0.000020114092,"threshold_uncertainty_score":0.2063598},"labels":[],"label_agreement":null},{"id":"W2096986619","doi":"10.1128/jb.01615-14","title":"Genetic Analysis of the Assimilation of C <sub>5</sub> -Dicarboxylic Acids in Pseudomonas aeruginosa PAO1","year":2014,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences","keywords":"rpoN; Biology; Sigma factor; Gene; Extracellular; Pseudomonas aeruginosa; Gene expression; Biofilm; Regulator gene; Biochemistry; Genetics; Microbiology; Bacteria; Promoter","score_opus":0.005711092849729057,"score_gpt":0.21297878982231985,"score_spread":0.2072676969725908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096986619","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99849385,0.00015707483,0.0006572491,0.0002685482,0.00029423635,0.000074153046,0.000012218978,0.0000014819333,0.000041208343],"genre_scores_gemma":[0.9988518,0.000390077,0.0005050529,0.000088345245,0.00013910567,0.0000018160688,0.000010377588,0.000010300325,0.0000031201591],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99843514,0.000273079,0.00080518966,0.00018060401,0.00011720361,0.00018877952],"domain_scores_gemma":[0.9984527,0.000035219182,0.00090698426,0.0003778201,0.00018372614,0.000043505792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043306805,0.00013945841,0.00053392554,0.00031011022,0.000020581885,0.0000050204812,0.00038165387,0.00040472503,0.000009430598],"category_scores_gemma":[0.00019196315,0.00010028463,0.00030447252,0.0004360122,0.00024147455,0.0000032938128,0.0001394856,0.00018091715,3.2934614e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010024675,0.000054968856,0.12788355,0.000009074949,0.00027002575,7.524451e-7,0.000020548774,0.0004771006,0.8676856,0.000029342506,0.000016448375,0.003452313],"study_design_scores_gemma":[0.00033390886,0.00042926884,0.5408957,0.000010794689,0.00016956744,0.00002118847,0.000006693193,0.00015096659,0.45731732,0.00006687555,0.0005352397,0.000062448285],"about_ca_topic_score_codex":0.00001046538,"about_ca_topic_score_gemma":0.00011291518,"teacher_disagreement_score":0.41301218,"about_ca_system_score_codex":0.000014645507,"about_ca_system_score_gemma":0.00008905859,"threshold_uncertainty_score":0.40894887},"labels":[],"label_agreement":null},{"id":"W2097226393","doi":"10.1128/jb.01905-06","title":"Functional Characterization and Membrane Topology of <i>Escherichia coli</i> WecA, a Sugar-Phosphate Transferase Initiating the Biosynthesis of Enterobacterial Common Antigen and O-Antigen Lipopolysaccharide","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institutes of Health","keywords":"Biology; Transferase; Biochemistry; Biosynthesis; Mutant; Asparagine; Aspartic acid; Escherichia coli; Bacterial outer membrane; Amino acid; Prenyltransferase; Molecular biology; Enzyme; Gene","score_opus":0.009490124401817233,"score_gpt":0.22136620032571336,"score_spread":0.21187607592389612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097226393","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970218,0.00037164686,0.0012714153,0.00051936443,0.0005825884,0.00015155616,0.00006650619,0.0000034130435,0.00001168947],"genre_scores_gemma":[0.9961256,0.002809968,0.00044504247,0.00022707955,0.00031776604,0.0000017953051,0.000047185767,0.000017848039,0.000007706305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998399,0.00016710159,0.00088165834,0.00021128022,0.00009268688,0.0002482513],"domain_scores_gemma":[0.9987251,0.00008305052,0.0007478804,0.00018650244,0.00018171455,0.00007572177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007267298,0.00019278687,0.00051967835,0.00012143932,0.00007601975,0.000014598065,0.00019556127,0.00038247008,0.000035560253],"category_scores_gemma":[0.00008586724,0.0001457067,0.000108760425,0.0000808379,0.0005060627,0.000013910765,0.00011013609,0.00017819782,2.6804213e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014018689,0.00007002357,0.022584762,0.00003433319,0.000186429,0.0000053842064,0.000104516235,8.252195e-7,0.9701708,0.00011294025,0.0000056851686,0.0053224647],"study_design_scores_gemma":[0.00073212385,0.0009695265,0.20594588,0.000025918489,0.000053351654,0.00019527433,0.00007695412,0.0000057759576,0.7904432,0.000023976912,0.0014216347,0.00010637978],"about_ca_topic_score_codex":0.0000380069,"about_ca_topic_score_gemma":0.000057710055,"teacher_disagreement_score":0.18336111,"about_ca_system_score_codex":0.0000074446125,"about_ca_system_score_gemma":0.00007319462,"threshold_uncertainty_score":0.5941747},"labels":[],"label_agreement":null},{"id":"W2097896589","doi":"10.1146/annurev.micro.56.012302.161103","title":"Control of Chromosome Replication in<i>Caulobacter Crescentus</i>","year":2002,"lang":"en","type":"review","venue":"Annual Review of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences","keywords":"Caulobacter crescentus; DnaA; Biology; DNA replication; Genetics; Pre-replication complex; Response regulator; Origin of replication; Circular bacterial chromosome; Cell cycle; Cell biology; DNA; Gene; Bacterial protein","score_opus":0.011152864118940772,"score_gpt":0.27945373150548025,"score_spread":0.26830086738653947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097896589","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017270581,0.9970433,0.000012398294,0.00008556018,0.00018784605,0.0010200865,0.0013665621,0.000005644062,0.000105890445],"genre_scores_gemma":[0.00038065558,0.99737203,0.0001037595,0.00031834745,0.00012441607,0.00006781995,0.0015013197,0.00003741809,0.00009420305],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971225,0.00034353347,0.0014463047,0.00071397464,0.000046788467,0.00032690167],"domain_scores_gemma":[0.9973885,0.000031929616,0.0011141474,0.0012238837,0.00019879278,0.000042775722],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00043906484,0.0003992506,0.0022682012,0.0001342874,0.0000126632995,0.0000022100146,0.000637853,0.0010865213,0.000081826285],"category_scores_gemma":[0.00023268671,0.00032099604,0.0005677581,0.0002463118,0.00026696647,0.0000021763592,0.00021581669,0.00024908112,0.000025078114],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002046425,0.0002190397,0.000007415117,0.07063044,0.00025335295,0.0000032366922,0.0000048997126,4.5357663e-8,0.20548429,0.000059022612,0.0050489735,0.7182688],"study_design_scores_gemma":[0.00028004462,0.0003881224,0.000002495697,0.021874,0.00026599545,0.00012302071,0.0000012091871,4.532325e-8,0.0055640833,0.0000025366953,0.97124314,0.000255285],"about_ca_topic_score_codex":0.0000089558225,"about_ca_topic_score_gemma":0.000006870762,"teacher_disagreement_score":0.9661942,"about_ca_system_score_codex":0.000022171726,"about_ca_system_score_gemma":0.00014068646,"threshold_uncertainty_score":0.9999242},"labels":[],"label_agreement":null},{"id":"W2097946039","doi":"10.1128/jb.01224-06","title":"Glycosylation of <i>Pseudomonas aeruginosa</i> Strain Pa5196 Type IV Pilins with Mycobacterium-Like α-1,5-Linked <scp>d</scp> -Ara <i>f</i> Oligosaccharides","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto; Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Colorado State University","keywords":"Biology; Pilin; Microbiology; Pilus; Lipoarabinomannan; Glycan; Mycobacterium; Bacterial adhesin; Glycosylation; Mycobacterium tuberculosis; Bacteria; Virulence; Biochemistry; Glycoprotein; Gene; Genetics","score_opus":0.007427442662156539,"score_gpt":0.21258778448034046,"score_spread":0.20516034181818393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097946039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972245,0.00061368395,0.00056479283,0.00019524188,0.00082358444,0.00017966403,0.00009719178,0.000013698576,0.00028762186],"genre_scores_gemma":[0.9947675,0.0006759565,0.003072128,0.0002047136,0.00084615144,0.0000037124132,0.00020978262,0.000041436913,0.0001786387],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979411,0.00014323024,0.00093895197,0.00035493038,0.0001840779,0.00043771975],"domain_scores_gemma":[0.99778324,0.00006418264,0.0010865901,0.00040540565,0.0005507467,0.00010985992],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00035305016,0.00033018645,0.000625775,0.00018112097,0.00006443706,0.00003122429,0.0004273377,0.0006252186,0.000021139544],"category_scores_gemma":[0.000118697564,0.00026368207,0.00018474697,0.00022634269,0.0003341889,0.0000172029,0.00012599718,0.0003174459,0.000006215937],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040939997,0.00015798626,0.0068481625,0.000031415704,0.0001399092,0.000025750178,0.000026746608,0.00008797003,0.9904093,0.00013567232,0.0009523181,0.0007753297],"study_design_scores_gemma":[0.0028663299,0.007399566,0.102558106,0.00008310464,0.00018386963,0.0012638893,0.000106731684,0.00002658314,0.74511045,0.00047555618,0.13961309,0.00031269656],"about_ca_topic_score_codex":0.00004285016,"about_ca_topic_score_gemma":0.00008988358,"teacher_disagreement_score":0.24529886,"about_ca_system_score_codex":0.000027233024,"about_ca_system_score_gemma":0.00028573035,"threshold_uncertainty_score":0.9999815},"labels":[],"label_agreement":null},{"id":"W2097963051","doi":"10.1074/jbc.m109.097865","title":"The Staphylococcus aureus Siderophore Receptor HtsA Undergoes Localized Conformational Changes to Enclose Staphyloferrin A in an Arginine-rich Binding Pocket","year":2010,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Siderophore; Ferric; Conformational change; Enterobactin; Ferrichrome; Chemistry; Ligand (biochemistry); Stereochemistry; Binding site; Protein structure; Biochemistry; Receptor; Crystallography; Biophysics; Biology; Escherichia coli; Bacterial outer membrane; Gene","score_opus":0.015353974778603455,"score_gpt":0.2605678619824158,"score_spread":0.24521388720381238,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097963051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971863,0.00032211232,0.000032555785,0.0018534418,0.0003184539,0.00014097118,0.000049585815,0.000008268568,0.0000883126],"genre_scores_gemma":[0.9972164,0.0005007682,0.0011185816,0.00036474023,0.00065154483,0.000013244825,0.000064025255,0.000012167737,0.000058522935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986457,0.00006124862,0.000499786,0.00025429856,0.0001731414,0.0003658201],"domain_scores_gemma":[0.99893236,0.000053991218,0.00031419226,0.0002919876,0.00021018246,0.00019725552],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000519871,0.00021524308,0.00026625715,0.000056244717,0.000120623125,0.00007115458,0.0005931774,0.0005989268,0.00011682941],"category_scores_gemma":[0.00041082283,0.00013195247,0.00009447301,0.00016828043,0.00021258528,0.000006158988,0.00019090614,0.0005356484,0.0000045509423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041673135,0.00008909687,0.0014919752,0.000010286484,0.000031625565,0.0000073320803,0.000028961524,0.000008449636,0.99543023,0.00003156253,0.00051490153,0.0019388443],"study_design_scores_gemma":[0.0006346636,0.0007821755,0.0014725163,0.000017672208,0.0000061221517,0.000035189158,0.0003566931,0.000008813036,0.9395721,0.00016830434,0.056738514,0.00020725974],"about_ca_topic_score_codex":0.0000034660668,"about_ca_topic_score_gemma":0.00008674365,"teacher_disagreement_score":0.056223616,"about_ca_system_score_codex":0.000024331628,"about_ca_system_score_gemma":0.00013113148,"threshold_uncertainty_score":0.53808653},"labels":[],"label_agreement":null},{"id":"W2098013517","doi":"10.1128/jb.187.24.8511-8515.2005","title":"FpvA-Mediated Ferric Pyoverdine Uptake in <i>Pseudomonas aeruginosa:</i> Identification of Aromatic Residues in FpvA Implicated in Ferric Pyoverdine Binding and Transport","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Pyoverdine; Ferrichrome; Biology; Ferric; Escherichia coli; Biochemistry; Pseudomonas aeruginosa; Binding site; Microbiology; Siderophore; Chemistry; Bacteria; Bacterial outer membrane; Organic chemistry; Gene","score_opus":0.008589243783311294,"score_gpt":0.2363217880215921,"score_spread":0.2277325442382808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098013517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979223,0.0007924898,0.00002923964,0.000839868,0.00015596297,0.00020181686,0.000027483906,0.0000049233,0.000025938281],"genre_scores_gemma":[0.99718803,0.002096249,0.00038259587,0.00007582432,0.000113996226,0.000007800135,0.00009296962,0.000020896681,0.000021660828],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99762714,0.00013274516,0.0014820271,0.00031921183,0.000102427715,0.00033643525],"domain_scores_gemma":[0.9988914,0.00003580767,0.0006884727,0.00024586907,0.00006792634,0.00007050755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070427835,0.00021971803,0.0006204229,0.00061176956,0.000019042294,0.000010476066,0.00027869907,0.0005138018,0.000013762783],"category_scores_gemma":[0.00013304026,0.00020299347,0.00008597244,0.00043397394,0.00014631475,0.000019736133,0.0000699435,0.00032017205,0.0000020593063],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037695083,0.00016566027,0.0763346,0.00003034641,0.00003051281,0.000023355446,0.00007545968,0.0000734601,0.92080534,0.000010699752,0.000023694462,0.002049946],"study_design_scores_gemma":[0.002162026,0.00056735013,0.76726973,0.00007483295,0.000021494785,0.00022292013,0.00006854773,0.00006583993,0.2281101,0.000094317824,0.0011518368,0.00019103115],"about_ca_topic_score_codex":0.00006778013,"about_ca_topic_score_gemma":0.0008004199,"teacher_disagreement_score":0.6926952,"about_ca_system_score_codex":0.00006390195,"about_ca_system_score_gemma":0.00010517591,"threshold_uncertainty_score":0.82778335},"labels":[],"label_agreement":null},{"id":"W2098039761","doi":"10.1128/jb.00476-09","title":"Sxy Induces a CRP-S Regulon in <i>Escherichia coli</i>","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of British Columbia","keywords":"Biology; Regulon; Escherichia coli; cAMP receptor protein; Genetics; Gene; Plasmid; Gene expression; Promoter","score_opus":0.008567151999744668,"score_gpt":0.23447054259741076,"score_spread":0.2259033905976661,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098039761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966717,0.00059726916,0.00005709224,0.0018177497,0.00047220636,0.00007515612,0.0000036203548,0.0000044005733,0.00030082988],"genre_scores_gemma":[0.996383,0.0006617355,0.0013045304,0.0010804994,0.00047713792,0.0000014109406,0.000009633008,0.00001054188,0.00007148607],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883723,0.00010792439,0.00051797304,0.00019682503,0.000068638205,0.00027138635],"domain_scores_gemma":[0.9992604,0.000009317555,0.00033917435,0.00021402637,0.000102300044,0.000074759744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030085281,0.0001552376,0.00034068638,0.0001369015,0.000025640626,0.00001689545,0.00031724677,0.00047714694,0.000022793809],"category_scores_gemma":[0.00008916725,0.000131328,0.00010812024,0.00013361979,0.00009316133,0.0000056464505,0.000058202393,0.0002760609,0.0000039514107],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003384029,0.00009773633,0.0007500883,0.0000030979786,0.000023130997,0.000026256981,0.000021551115,0.000006509625,0.9923377,0.00007273156,0.0005233265,0.005799438],"study_design_scores_gemma":[0.001607324,0.005237632,0.141848,0.000035957648,0.000021912743,0.00043181042,0.000051855204,0.0000045714423,0.7569655,0.00081280887,0.09268837,0.00029425244],"about_ca_topic_score_codex":0.000005796492,"about_ca_topic_score_gemma":0.000019559797,"teacher_disagreement_score":0.23537223,"about_ca_system_score_codex":0.000018865048,"about_ca_system_score_gemma":0.00012062851,"threshold_uncertainty_score":0.53554004},"labels":[],"label_agreement":null},{"id":"W2098280552","doi":"10.1016/j.sbi.2007.12.011","title":"Piecing together the Type III injectisome of bacterial pathogens","year":2008,"lang":"en","type":"review","venue":"Current Opinion in Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Howard Hughes Medical Institute","keywords":"Secretion; Flagellum; Structural biology; Membrane protein; Biology; Protein filament; Effector; Membrane; Biophysics; Type three secretion system; Bacterial protein; Bacterial outer membrane; Bacteria; Cell biology; Chemistry; Virulence; Biochemistry; Escherichia coli; Gene","score_opus":0.04839208972737053,"score_gpt":0.35064265051551735,"score_spread":0.3022505607881468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098280552","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02059121,0.9661161,0.000005509063,0.000012166416,0.012523762,0.0005130207,0.00020461259,0.000009892062,0.000023767254],"genre_scores_gemma":[0.0031918348,0.9932206,0.000061910614,0.000005803533,0.0016895691,0.000031277155,0.0017525078,0.000033905293,0.000012582154],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99791396,0.00029725023,0.00076568034,0.0005777399,0.00006915907,0.00037620447],"domain_scores_gemma":[0.9987778,0.00003791979,0.00048375872,0.000576589,0.00008110615,0.00004284131],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000109802175,0.00042645386,0.0009866698,0.0001415517,0.000068691705,0.0000101452115,0.0006177003,0.0009984461,0.000056754736],"category_scores_gemma":[0.00008779386,0.0002670603,0.0003038822,0.00028504635,0.00040173976,0.000002004472,0.00045042217,0.0004257939,0.000006625087],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007318442,0.000021511323,0.00011548023,0.001061856,0.000111552625,4.1967752e-7,0.000049640912,6.952927e-7,0.012411177,0.00033665824,0.00047409147,0.98534375],"study_design_scores_gemma":[0.00030221924,0.00033295198,0.00006679455,0.00053279224,0.000030208563,0.000113347414,0.000009292415,9.601843e-7,0.00032246872,0.00007335548,0.9978999,0.00031574676],"about_ca_topic_score_codex":0.000017131117,"about_ca_topic_score_gemma":0.000008146492,"teacher_disagreement_score":0.9974258,"about_ca_system_score_codex":0.000027776516,"about_ca_system_score_gemma":0.00022691757,"threshold_uncertainty_score":0.9999782},"labels":[],"label_agreement":null},{"id":"W2098428537","doi":"10.1111/j.1462-2920.2012.02890.x","title":"<scp> <scp>Wzx</scp> </scp> flippase‐mediated membrane translocation of sugar polymer precursors in bacteria","year":2012,"lang":"en","type":"review","venue":"Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Cystic Fibrosis Canada","keywords":"Periplasmic space; Antiporter; Biology; Inner membrane; Biochemistry; Biophysics; Cell biology; Membrane; Gene; Escherichia coli","score_opus":0.010104562240632548,"score_gpt":0.21884779131911342,"score_spread":0.20874322907848086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098428537","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2522466,0.744846,0.00001165695,0.000011553644,0.00060127437,0.00078407594,0.0013827318,0.000017514747,0.00009861457],"genre_scores_gemma":[0.019713754,0.96494424,0.00023521586,0.00007006923,0.00032338343,0.00011642534,0.013445402,0.00013680791,0.0010146807],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964128,0.00045497474,0.001140127,0.0010104105,0.000081320766,0.00090035994],"domain_scores_gemma":[0.9982096,0.00014972004,0.0006920004,0.0007835931,0.000011116774,0.00015397191],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00030275795,0.0008260938,0.0015852704,0.00028459294,0.000053079824,0.000013012336,0.00070787716,0.0026905946,0.00009841716],"category_scores_gemma":[0.00007930289,0.00076962175,0.00045717653,0.00020571236,0.00063517375,0.0000079632755,0.00035799204,0.00045661142,0.00015392243],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007908015,0.00033469012,0.000080732345,0.0007218268,0.00024546584,0.0000037478017,0.00007401643,9.5128337e-7,0.9728429,0.0000065959503,0.0003701541,0.025311042],"study_design_scores_gemma":[0.0004841754,0.000301308,0.00007913552,0.00023415637,0.00021410732,0.00011948303,0.00005548055,2.2965429e-7,0.31957108,0.0000015564469,0.6788011,0.00013815622],"about_ca_topic_score_codex":0.000022466449,"about_ca_topic_score_gemma":0.000045443376,"teacher_disagreement_score":0.678431,"about_ca_system_score_codex":0.00009151562,"about_ca_system_score_gemma":0.00011026717,"threshold_uncertainty_score":0.9994755},"labels":[],"label_agreement":null},{"id":"W2098563549","doi":"10.1111/mmi.13059","title":"Catecholate siderophore esterases Fes, <scp>IroD</scp> and <scp>IroE</scp> are required for salmochelins secretion following utilization, but only <scp>IroD</scp> contributes to virulence of extra‐intestinal pathogenic <scp><i>E</i></scp><i>scherichia coli</i>","year":2015,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Armand-Frappier Foundation","keywords":"Enterobactin; Virulence; Siderophore; Biology; Mutant; Secretion; Microbiology; Escherichia coli; Salmonella enterica; Aerobactin; Virulence factor; Pathogenic Escherichia coli; Colicin; Intracellular; Biochemistry; Enterobacteriaceae; Gene","score_opus":0.01885082333676118,"score_gpt":0.243774487696489,"score_spread":0.2249236643597278,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098563549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96330607,0.015128045,0.017271342,0.00020259913,0.0009015992,0.0018300334,0.0011021494,0.00014872005,0.000109464585],"genre_scores_gemma":[0.9862383,0.0011179147,0.0068130083,0.0016591145,0.00028192683,0.00024313593,0.0026005793,0.0002210883,0.00082493154],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9940765,0.00052128936,0.0014125423,0.0020805474,0.0002462596,0.0016628733],"domain_scores_gemma":[0.99564934,0.00053653243,0.0009707642,0.0012511476,0.0010394573,0.0005527559],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00093544263,0.0011167267,0.0013412957,0.00037049147,0.00034199125,0.00016464715,0.0010579121,0.0018986864,0.0000014335574],"category_scores_gemma":[0.006941483,0.0011648734,0.00051041774,0.00070769986,0.00064919173,0.00003703326,0.000868633,0.00054198946,0.000023361521],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042386357,0.0002630817,0.0033362436,0.0001646389,0.00039395143,0.00007654026,0.0002798556,0.00007884406,0.98974067,0.00014441737,0.00496667,0.00051270984],"study_design_scores_gemma":[0.00269891,0.0018998027,0.0023936396,0.00018969143,0.0003619922,0.0004027194,0.0011088568,0.00007686505,0.8800306,0.00042936785,0.11022692,0.00018064062],"about_ca_topic_score_codex":0.00007699494,"about_ca_topic_score_gemma":0.00015905901,"teacher_disagreement_score":0.10971007,"about_ca_system_score_codex":0.00011894353,"about_ca_system_score_gemma":0.0005693936,"threshold_uncertainty_score":0.99939704},"labels":[],"label_agreement":null},{"id":"W2098624375","doi":"10.1128/jb.185.19.5747-5754.2003","title":"In Vivo Evidence for TonB Dimerization","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Biology; Periplasmic space; Bacterial outer membrane; Colicin; Ferrichrome; Mutant; Escherichia coli; Cytoplasm; Transmembrane protein; Siderophore; Transcription (linguistics); Transport protein; Biochemistry; Molecular biology; Cell biology; Gene","score_opus":0.01915351833997134,"score_gpt":0.2815240590901858,"score_spread":0.26237054075021443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098624375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99510086,0.00048520966,0.0025942726,0.0007916106,0.0008443294,0.000104711326,0.0000050130625,0.0000014188736,0.00007260418],"genre_scores_gemma":[0.995034,0.0005220192,0.0036434727,0.00029924657,0.0002587866,0.0000056692948,0.0000037242887,0.00001049852,0.00022259032],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992169,0.000083311636,0.00035156053,0.00013622745,0.00004683201,0.00016515917],"domain_scores_gemma":[0.9993946,0.00002973219,0.00023218639,0.0001309367,0.00017535767,0.000037216912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041867126,0.00008806637,0.00019024819,0.000083206774,0.000019792613,0.000009129157,0.00014669928,0.00025806343,0.00004467539],"category_scores_gemma":[0.00072103244,0.00007593488,0.00007825181,0.000066633555,0.0000589324,0.000006243633,0.000024918172,0.000082571954,0.0000010309981],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021477616,0.000029930656,0.0016738956,0.0000068400823,0.00001779868,0.000002841572,0.000011208987,0.00001543375,0.996416,0.00035646834,0.00082968187,0.00042515682],"study_design_scores_gemma":[0.0006560122,0.0013521934,0.0023610417,0.000017897595,0.000011491914,0.00018197187,0.000017354518,0.0000047139633,0.76392376,0.0004396168,0.23093483,0.00009909265],"about_ca_topic_score_codex":0.0000021919482,"about_ca_topic_score_gemma":0.00001010991,"teacher_disagreement_score":0.2324922,"about_ca_system_score_codex":0.000013442317,"about_ca_system_score_gemma":0.00010152381,"threshold_uncertainty_score":0.30965346},"labels":[],"label_agreement":null},{"id":"W2099053766","doi":"10.1128/jb.01690-06","title":"S-Layer Anchoring and Localization of an S-Layer-Associated Protease in <i>Caulobacter crescentus</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of British Columbia","keywords":"Caulobacter crescentus; S-layer; Biology; Protease; Bacterial outer membrane; Protein subunit; Anchoring; Extracellular; Cell biology; Biochemistry; Escherichia coli; Enzyme; Bacterial protein; Gene","score_opus":0.009942327029735323,"score_gpt":0.24979130843835817,"score_spread":0.23984898140862285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099053766","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99848855,0.00025455435,0.0007489251,0.00007197276,0.00026413874,0.00012302793,0.000007688225,0.0000031790835,0.000037946844],"genre_scores_gemma":[0.9986332,0.00030238504,0.0006480856,0.00013233082,0.00023343161,0.0000012196322,0.000022947732,0.000014839407,0.000011534246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987568,0.00010857105,0.0006196457,0.0001867555,0.000075497795,0.00025272],"domain_scores_gemma":[0.9990828,0.000012445572,0.00047091476,0.00016216742,0.00017803219,0.000093639515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069648825,0.00013504583,0.00030671307,0.00016620183,0.0000245699,0.0000104305955,0.00015597216,0.00042423155,0.000009831068],"category_scores_gemma":[0.0001435292,0.0001194881,0.000056671455,0.00011714308,0.00012066458,0.000011125792,0.000082313396,0.0001766145,3.5427874e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048408294,0.00015866326,0.049061675,0.000013905926,0.00003532304,0.000019329473,0.000036191992,0.000018070816,0.9455539,0.000014640271,0.000024853713,0.004579377],"study_design_scores_gemma":[0.0015530479,0.00212824,0.20433487,0.000051314222,0.000023727143,0.00014556735,0.00006526683,0.000043408425,0.785787,0.00010331625,0.00559333,0.00017093128],"about_ca_topic_score_codex":0.000023093722,"about_ca_topic_score_gemma":0.00013330586,"teacher_disagreement_score":0.15976691,"about_ca_system_score_codex":0.000022694176,"about_ca_system_score_gemma":0.00006176698,"threshold_uncertainty_score":0.48725832},"labels":[],"label_agreement":null},{"id":"W2099226993","doi":"10.1093/nar/29.21.4441","title":"Replication intermediate analysis confirms that chromosomal replication origin initiates from an unusual intergenic region in Caulobacter crescentus","year":2001,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Caulobacter crescentus; Origin of replication; Genetics; Control of chromosome duplication; DNA replication; Origin recognition complex; Autonomously replicating sequence; Pre-replication complex; Eukaryotic DNA replication; Gene; Cell cycle","score_opus":0.059479096751598994,"score_gpt":0.363352079982731,"score_spread":0.303872983231132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099226993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978413,0.00018868994,0.00027634585,0.0008639691,0.00011791625,0.00033528218,0.000039171606,0.000036714617,0.00030063084],"genre_scores_gemma":[0.995851,0.001549893,0.00013549712,0.00013063346,0.00034119337,0.000075004726,0.0016634299,0.000034578108,0.00021881761],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99719185,0.00034705902,0.00039263727,0.0012300748,0.00029528144,0.0005431153],"domain_scores_gemma":[0.9973554,0.000026096355,0.00012324043,0.0021120068,0.00023143613,0.00015184062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071915286,0.00020417159,0.00026522792,0.00045213423,0.0001065522,0.00009841862,0.0007027319,0.0005580062,0.00012808616],"category_scores_gemma":[0.00022557983,0.0001954266,0.00011442565,0.0008965505,0.0002902322,0.000020236364,0.00035637297,0.00040359958,0.00004010098],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004516549,0.00019716313,0.16560812,0.00000592815,0.0001553395,0.000026881478,0.00011987309,0.0000042918045,0.8145758,0.00006200682,0.00035541953,0.01843755],"study_design_scores_gemma":[0.0009139153,0.0008464051,0.4591568,0.000026426382,0.00006233951,0.0000270406,0.00026978663,0.0010179072,0.49966013,0.0003552182,0.037304807,0.000359187],"about_ca_topic_score_codex":0.0007222567,"about_ca_topic_score_gemma":0.0015922376,"teacher_disagreement_score":0.31491563,"about_ca_system_score_codex":0.00010055891,"about_ca_system_score_gemma":0.0000880588,"threshold_uncertainty_score":0.79692656},"labels":[],"label_agreement":null},{"id":"W2099329633","doi":"10.1128/mbio.00189-10","title":"Membrane Topology Mapping of the O-Antigen Flippase (Wzx), Polymerase (Wzy), and Ligase (WaaL) from Pseudomonas aeruginosa PAO1 Reveals Novel Domain Architectures","year":2010,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Stockholms Universitet; University of South Alabama","keywords":"Periplasmic space; Inner membrane; Biology; DNA ligase; Membrane protein; Transmembrane domain; Bacterial outer membrane; Biochemistry; Gene; Escherichia coli; Membrane","score_opus":0.0058778912794848585,"score_gpt":0.2071079636949698,"score_spread":0.20123007241548496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099329633","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959788,0.0005629941,0.00018004027,0.0020214908,0.00059746846,0.00024995895,0.00025875948,0.000016173724,0.00013431211],"genre_scores_gemma":[0.9951213,0.00013657515,0.0034668345,0.0006474592,0.00038526783,0.0000119381875,0.00006544495,0.000023829263,0.00014137795],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986816,0.00006836744,0.00032878626,0.00048026803,0.000108383014,0.0003326112],"domain_scores_gemma":[0.9988997,0.000030824052,0.00018045219,0.00074523623,0.000044882752,0.00009890721],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018568493,0.00023762014,0.00028372864,0.00006281855,0.0001268007,0.000022193455,0.00042026248,0.0005443868,0.000052590978],"category_scores_gemma":[0.0001039524,0.00017747462,0.00012138758,0.000111517315,0.00054558483,0.0000016882213,0.00043057094,0.00030531798,0.0000023740317],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007672553,0.000069279835,0.0038885695,0.0000143493535,0.0000688495,0.0000039875717,0.000091242175,0.000001220991,0.99325216,0.0003226656,0.00011982594,0.0020911226],"study_design_scores_gemma":[0.0007233611,0.00011622225,0.013508324,0.00001562911,0.000022070608,0.00006094875,0.000051907147,0.000005053512,0.96836406,0.0006627221,0.016252428,0.0002172774],"about_ca_topic_score_codex":0.00040230466,"about_ca_topic_score_gemma":0.0005179376,"teacher_disagreement_score":0.024888106,"about_ca_system_score_codex":0.0000034433772,"about_ca_system_score_gemma":0.00006082246,"threshold_uncertainty_score":0.72372055},"labels":[],"label_agreement":null},{"id":"W2099375186","doi":"10.1006/jmbi.2001.5279","title":"The ATPase domain of SecA can form a tetramer in solution 1 1Edited by I. B. Holland","year":2002,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"European Molecular Biology Laboratory","keywords":"Tetramer; Small-angle X-ray scattering; Monomer; Crystallography; Chemistry; Size-exclusion chromatography; ATPase; ATP hydrolysis; Biophysics; Translocase; Stereochemistry; Biochemistry; Biology; Scattering; Enzyme; Physics","score_opus":0.004894795360765541,"score_gpt":0.2193757546306996,"score_spread":0.21448095926993407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099375186","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992147,0.0042965943,0.0010032802,0.0020546464,0.00026011857,0.00009728046,0.000028401626,0.0000019657255,0.00011068602],"genre_scores_gemma":[0.99744904,0.0016291091,0.0005529581,0.00018016067,0.00010892436,0.0000029526457,0.000021092661,0.000012402974,0.000043356315],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988918,0.00012595282,0.00047232164,0.00015674932,0.000084133935,0.00026906154],"domain_scores_gemma":[0.99923456,0.00001719296,0.00034940054,0.00022730959,0.00011484764,0.000056691864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032446257,0.0001312526,0.00022731494,0.000090740265,0.00004269239,0.000009623108,0.00029495213,0.00036843203,0.000011259833],"category_scores_gemma":[0.000112100635,0.000090384274,0.00012427915,0.00013856812,0.0002321731,0.0000017343572,0.00008138764,0.00019407623,8.8252364e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103913626,0.00007388084,0.00094999233,0.0000041479834,0.00006308969,0.000011560235,0.000022338687,0.0000024691092,0.9932869,0.00009746645,0.0015698142,0.0038143976],"study_design_scores_gemma":[0.0015899085,0.0018664169,0.000692817,0.000015825519,0.000022458318,0.00018494077,0.000055126522,0.00003797634,0.9157608,0.00095402176,0.07865124,0.00016847388],"about_ca_topic_score_codex":0.00002094525,"about_ca_topic_score_gemma":0.00010185024,"teacher_disagreement_score":0.07752614,"about_ca_system_score_codex":0.000013839614,"about_ca_system_score_gemma":0.000035970243,"threshold_uncertainty_score":0.36857638},"labels":[],"label_agreement":null},{"id":"W2099441155","doi":"10.1128/jb.00791-06","title":"Transcription Modulation of <i>Salmonella enterica</i> Serovar Typhimurium Promoters by Sub-MIC Levels of Rifampin","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Salmonella enterica; Biology; Transcription (linguistics); Promoter; Salmonella; RNA polymerase; Serotype; Bacterial transcription; Mutant; Microbiology; Molecular biology; Genetics; RNA; Gene; Bacteria; Gene expression","score_opus":0.007984872803456318,"score_gpt":0.21091825392096358,"score_spread":0.20293338111750728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099441155","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99698657,0.0004006727,0.0017704093,0.0002346793,0.00037882576,0.000105184234,0.00008731037,0.0000032560315,0.00003310663],"genre_scores_gemma":[0.9985118,0.00026528168,0.0008798077,0.00003909968,0.00018907063,0.0000013579399,0.00005878709,0.000016801823,0.00003800452],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871147,0.000082918436,0.00075309776,0.00018030309,0.00009098195,0.00018125513],"domain_scores_gemma":[0.99878246,0.000007729829,0.00076613104,0.00019642891,0.00021061725,0.000036613248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022822,0.00014978563,0.00038209208,0.00010263787,0.000017959905,0.0000053510676,0.00020866255,0.00037744004,0.000015555046],"category_scores_gemma":[0.000018860552,0.00013304973,0.00016360423,0.00008785656,0.00017445402,0.000007082169,0.000037242517,0.00012058085,7.757966e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003542152,0.00013776467,0.0012629784,0.000031868767,0.000062295454,0.0000016496856,0.000013564648,0.000047273224,0.9959674,0.000016806878,0.0003597433,0.0017444803],"study_design_scores_gemma":[0.00077209354,0.0015646702,0.04423385,0.000021428585,0.000033735745,0.00010279499,0.000010400069,0.0000242798,0.9496496,0.00015350617,0.0033205375,0.00011310996],"about_ca_topic_score_codex":0.000021477259,"about_ca_topic_score_gemma":0.000007739082,"teacher_disagreement_score":0.046317767,"about_ca_system_score_codex":0.000014207217,"about_ca_system_score_gemma":0.000055008146,"threshold_uncertainty_score":0.54256105},"labels":[],"label_agreement":null},{"id":"W2099494724","doi":"10.1139/w2012-025","title":"Chromosomal bacterial type II toxin–antitoxin systems","year":2012,"lang":"en","type":"review","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Antitoxin; Biology; Toxin; Archaea; Gene; Bacteria; RNA; Genetics; Microbiology","score_opus":0.02093382871369413,"score_gpt":0.24050349929918402,"score_spread":0.2195696705854899,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099494724","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0109551,0.9778964,0.00000405134,0.00003180046,0.010294587,0.00026163482,0.00042924346,0.000003841303,0.00012332086],"genre_scores_gemma":[0.0060319277,0.98769784,0.00011735429,0.000045303637,0.0048348065,0.000004753773,0.000782797,0.00007688108,0.00040833332],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977375,0.0002516295,0.0009169518,0.00033089434,0.000036968908,0.0007260516],"domain_scores_gemma":[0.99800485,0.000012397614,0.00082353194,0.0004491953,0.00023230311,0.00047773993],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00034048327,0.00045588627,0.0013843587,0.00034864515,0.00014123943,0.000045666042,0.0008245727,0.0020755187,0.0002715085],"category_scores_gemma":[0.00007429289,0.0003740469,0.0004296396,0.00016794977,0.00028294968,0.0000039462298,0.00014276258,0.0005123204,0.00006314826],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008565627,0.00008783528,0.000024124505,0.0022863843,0.00163919,0.00020368556,0.0000394475,0.0000021073465,0.66896164,0.00016054075,0.032271154,0.29423824],"study_design_scores_gemma":[0.00022023295,0.0008752174,0.0000016588626,0.0005988002,0.00039353198,0.0057782843,0.000005672735,3.76138e-8,0.0019182927,0.0000011741269,0.9898284,0.00037867195],"about_ca_topic_score_codex":0.00021541583,"about_ca_topic_score_gemma":0.0015116507,"teacher_disagreement_score":0.95755726,"about_ca_system_score_codex":0.00010729488,"about_ca_system_score_gemma":0.0031481471,"threshold_uncertainty_score":0.99987113},"labels":[],"label_agreement":null},{"id":"W2099735662","doi":"10.1128/jb.00959-06","title":"Cooperative and Critical Roles for Both G Domains in the GTPase Activity and Cellular Function of Ribosome-Associated <i>Escherichia coli</i> EngA","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; GTPase; Ribosome; Escherichia coli; Escherichia coli Proteins; Function (biology); Cell biology; Bacterial protein; Computational biology; Genetics; Bacteria; RNA; Gene","score_opus":0.006635610138601052,"score_gpt":0.22616251588156017,"score_spread":0.2195269057429591,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099735662","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973784,0.0005889558,0.0009859634,0.0007283373,0.00012940336,0.0001321197,0.0000378387,0.0000014243334,0.000017521486],"genre_scores_gemma":[0.9991238,0.00021136753,0.00031843435,0.00015510604,0.00015342869,0.0000060227626,0.000016412881,0.000007800771,0.000007604997],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916244,0.00020662206,0.0002867307,0.0001414933,0.000045519122,0.00015720709],"domain_scores_gemma":[0.99947107,0.00009246603,0.00020205895,0.0000903214,0.00011646343,0.000027593223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004180457,0.000109520384,0.00026604655,0.000048747715,0.000053374843,0.000015598092,0.00008960147,0.00029312263,0.000002355284],"category_scores_gemma":[0.00016108212,0.00007816798,0.000053032625,0.00005750089,0.00027193737,0.0000061156306,0.000043043685,0.0001552856,5.44992e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005620157,0.00013680081,0.0019188335,0.000013262949,0.000035593348,0.0000033585804,0.000028783468,0.000003653348,0.99641114,0.00037603392,0.000081876125,0.00042865443],"study_design_scores_gemma":[0.0028441413,0.0061493698,0.21266647,0.000027633381,0.000114829294,0.0000682943,0.0002022222,0.000054430253,0.76916903,0.0011707736,0.0073186965,0.0002141095],"about_ca_topic_score_codex":0.000019395324,"about_ca_topic_score_gemma":0.0001394276,"teacher_disagreement_score":0.2272421,"about_ca_system_score_codex":0.000008401845,"about_ca_system_score_gemma":0.000050083865,"threshold_uncertainty_score":0.31875974},"labels":[],"label_agreement":null},{"id":"W2099809645","doi":"10.1128/iai.68.2.931-936.2000","title":"Functional Conservation of the Polysaccharide Biosynthetic Protein WbpM and Its Homologues in <i>Pseudomonas aeruginosa</i> and Other Medically Significant Bacteria","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Toronto General Hospital; University of Toronto","funders":"","keywords":"Biology; Pseudomonas aeruginosa; Subfamily; Microbiology; Bacteria; Mutant; Gene; Amino acid; Biochemistry; Genetics","score_opus":0.010691961603918304,"score_gpt":0.2079529758804972,"score_spread":0.19726101427657888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099809645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987732,0.00023863313,0.000008863492,0.00062746863,0.00005979103,0.00018442224,0.000018996378,0.0000063777493,0.00008224521],"genre_scores_gemma":[0.99903387,0.0005940503,0.00002396533,0.00018632472,0.000024944542,0.000012158333,0.000008842651,0.000005683575,0.000110187204],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944943,0.000109831664,0.00016046378,0.00014468844,0.000044018605,0.00009156971],"domain_scores_gemma":[0.9997572,0.00000988761,0.000056702705,0.00012101065,0.000028782619,0.000026417176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001741851,0.00008749935,0.000098165896,0.000033302993,0.000074604664,0.000013262675,0.000043512904,0.00017971422,0.00007276158],"category_scores_gemma":[0.000048929094,0.00006586796,0.000018961782,0.000070247756,0.00022230289,0.000004291211,0.00006298017,0.00010691871,8.009084e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007630153,0.00004485297,0.009542583,0.000013620569,0.000011833712,1.0407495e-7,0.000022186863,3.5616912e-7,0.9859731,0.00008430575,0.000019493842,0.004211248],"study_design_scores_gemma":[0.00042311306,0.00019649521,0.2940006,0.000025624022,0.000008533595,0.000031226176,0.000014409898,0.000022812672,0.69833136,0.00013492168,0.006724368,0.000086568434],"about_ca_topic_score_codex":0.00053675676,"about_ca_topic_score_gemma":0.00022411691,"teacher_disagreement_score":0.28764176,"about_ca_system_score_codex":0.0000038487833,"about_ca_system_score_gemma":0.000028515355,"threshold_uncertainty_score":0.26860175},"labels":[],"label_agreement":null},{"id":"W2100177761","doi":"10.1111/j.1365-2958.2012.08080.x","title":"Processing by rhomboid protease is required for <i>Providencia stuartii</i> TatA to interact with TatC and to form functional homo‐oligomeric complexes","year":2012,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Biotechnology and Biological Sciences Research Council; Wellcome Trust","keywords":"Twin-arginine translocation pathway; Biology; Escherichia coli; Biochemistry; Membrane transport protein; Cell biology; Membrane protein; Membrane","score_opus":0.009011482788230092,"score_gpt":0.23356938889997322,"score_spread":0.22455790611174314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100177761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9638652,0.0012232242,0.031638246,0.0015512496,0.00014085825,0.0011686021,0.0003645221,0.000024624182,0.00002343491],"genre_scores_gemma":[0.98392105,0.000017099348,0.00955636,0.0051786588,0.00014693235,0.0003101004,0.00063302414,0.00005009559,0.00018669778],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840397,0.00004311063,0.00026993192,0.000603828,0.000050001956,0.0006291331],"domain_scores_gemma":[0.99919105,0.000009085669,0.000109503926,0.00032996995,0.00014255938,0.00021781866],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015004438,0.00029878676,0.00029390593,0.00008989638,0.00013206269,0.00004420688,0.00022010939,0.00026397943,0.000016029453],"category_scores_gemma":[0.00005194824,0.00025473145,0.000062483276,0.00015827373,0.00015448232,0.000011041006,0.00027424758,0.00009574254,0.000014094831],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005374775,0.00009702386,0.00042353073,0.00003767526,0.00006484497,0.0000013372093,0.00010454713,0.0000018300493,0.98435307,0.000022458049,0.009270897,0.0050852853],"study_design_scores_gemma":[0.0005644174,0.0014406466,0.00022923827,0.000018639197,0.000031951884,0.000117237665,0.00005357061,0.0000033643323,0.7849707,0.000020650095,0.21223474,0.00031487024],"about_ca_topic_score_codex":0.000018098997,"about_ca_topic_score_gemma":0.000017972943,"teacher_disagreement_score":0.20296383,"about_ca_system_score_codex":0.000023868079,"about_ca_system_score_gemma":0.0000694248,"threshold_uncertainty_score":0.99999046},"labels":[],"label_agreement":null},{"id":"W2100351998","doi":"10.1046/j.1365-2958.2001.02434.x","title":"Transcription of essential cell division genes is linked to chromosome replication in <i>Escherichia coli</i>","year":2001,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Institute of Genetics; Darwin Trust of Edinburgh","keywords":"Biology; Cell division; DNA replication; Genetics; Gene; Transcription (linguistics); Control of chromosome duplication; Chromosome; Origin of replication; Molecular biology; Cell","score_opus":0.005760220590963069,"score_gpt":0.22053859900423867,"score_spread":0.2147783784132756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100351998","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934243,0.0009767431,0.004234779,0.00063332147,0.00018152304,0.00037155757,0.00004716895,0.000013155662,0.00011743593],"genre_scores_gemma":[0.9965732,0.0005409996,0.0014333262,0.00091091,0.00005582214,0.000028269973,0.00033121556,0.000025897543,0.00010033639],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99856997,0.00009235341,0.00037491095,0.0006191476,0.000041511725,0.00030209494],"domain_scores_gemma":[0.9991255,0.0000033834092,0.000111240886,0.0006227152,0.0000830186,0.000054147135],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014769,0.00018810599,0.00024667467,0.00011790953,0.000028956345,0.000008608352,0.00028989284,0.0005205801,0.00003227092],"category_scores_gemma":[0.000016542203,0.0001958755,0.00010265953,0.00025768223,0.00009368272,0.0000023327646,0.00012644037,0.00010367644,0.000016409465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012836159,0.00013744531,0.00045360575,0.00001726864,0.000017274195,0.0000055936916,0.000038418646,0.000039794337,0.9973912,0.000021393453,0.00014278216,0.0016068226],"study_design_scores_gemma":[0.000611047,0.0005216656,0.0013203918,0.00001093134,0.000012705982,0.00001567002,0.000010423851,0.0000113145825,0.94199306,0.00003441868,0.05526315,0.00019525367],"about_ca_topic_score_codex":0.00004401264,"about_ca_topic_score_gemma":0.000038204496,"teacher_disagreement_score":0.05539821,"about_ca_system_score_codex":0.000015619587,"about_ca_system_score_gemma":0.00003999544,"threshold_uncertainty_score":0.7987571},"labels":[],"label_agreement":null},{"id":"W2100362571","doi":"10.1128/jb.182.19.5359-5364.2000","title":"Binding of Ferric Enterobactin by the<i>Escherichia coli</i>Periplasmic Protein FepB","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; National Institute of General Medical Sciences; National Institutes of Health; National Science Foundation","keywords":"Enterobactin; Periplasmic space; Siderophore; Escherichia coli; Ferric; Biology; Ferrichrome; Biochemistry; Affinity chromatography; Bacterial outer membrane; Chemistry; Enzyme","score_opus":0.006660491402174239,"score_gpt":0.21603083312553395,"score_spread":0.20937034172335972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100362571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981089,0.00048823244,0.00004688419,0.00060155336,0.0003049403,0.00015591257,0.000028543085,0.0000041876883,0.00026082693],"genre_scores_gemma":[0.99767166,0.0005500208,0.0005483152,0.00019907602,0.0002266445,0.0000060123025,0.000020592046,0.00002052999,0.0007571574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986856,0.00016477663,0.0005959474,0.00019048493,0.00009206755,0.00027110457],"domain_scores_gemma":[0.999066,0.000014000249,0.00048263592,0.00027333852,0.00009757315,0.000066427885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029697688,0.00017909397,0.00035131362,0.000060837556,0.00006172369,0.00001742415,0.00046400647,0.0003512202,0.00026403303],"category_scores_gemma":[0.000044134682,0.00012591545,0.00016431871,0.00011545386,0.00023762531,0.000005605309,0.000075152,0.00026776656,0.000011009537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043535206,0.00008014882,0.00056919275,0.000009894099,0.000101358746,0.0000037994023,0.000019652116,0.000006245147,0.99245507,0.00000970659,0.0012836704,0.0050258976],"study_design_scores_gemma":[0.00075129396,0.0018212164,0.0023666704,0.000026137128,0.000030253192,0.00025498334,0.000045410477,0.0000048995735,0.8361885,0.000029007128,0.15833549,0.00014616895],"about_ca_topic_score_codex":0.000017266746,"about_ca_topic_score_gemma":0.00000882043,"teacher_disagreement_score":0.15705182,"about_ca_system_score_codex":0.000016920558,"about_ca_system_score_gemma":0.00008915679,"threshold_uncertainty_score":0.5134683},"labels":[],"label_agreement":null},{"id":"W2100580791","doi":"10.1128/iai.00882-09","title":"Role of RpoS in Virulence of Pathogens","year":2009,"lang":"en","type":"review","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":193,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"rpoS; Virulence; Biology; Microbiology; Regulator; Genetics; Gene; Gene expression","score_opus":0.013760531325803772,"score_gpt":0.27648567078482955,"score_spread":0.26272513945902576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100580791","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12543046,0.8740839,0.0000055451474,0.000001615972,0.00005192105,0.00015365484,0.000028757127,0.0000030965882,0.00024107078],"genre_scores_gemma":[0.042390086,0.95745724,0.000039480674,0.0000046364116,0.000022993281,0.000005719765,0.000060338112,0.0000069488237,0.0000125437255],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993359,0.000104244,0.0003086087,0.00013506312,0.000030587616,0.00008559777],"domain_scores_gemma":[0.9994872,0.000006349329,0.00020734787,0.0002454338,0.000037007594,0.000016630094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013317452,0.00012688342,0.00043904284,0.000101523234,0.000016237409,0.000003248694,0.000086689965,0.00046495357,0.0000059442236],"category_scores_gemma":[0.000038005623,0.00011217646,0.00010827473,0.00012397452,0.0000831816,0.000001060781,0.00009007608,0.00015375706,7.0314644e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000064375345,0.00006773684,0.000089688976,0.00056627276,0.000019642228,1.2324888e-7,0.0000054653424,1.6666145e-7,0.14541438,0.000024715342,0.0000029564035,0.8538024],"study_design_scores_gemma":[0.00015879702,0.0005537203,0.002456166,0.0008911938,0.00007175289,0.000025005827,0.0000070650767,9.909918e-7,0.03740885,0.00008146743,0.958168,0.00017697048],"about_ca_topic_score_codex":0.00015089409,"about_ca_topic_score_gemma":0.00006549994,"teacher_disagreement_score":0.95816505,"about_ca_system_score_codex":0.0000056977206,"about_ca_system_score_gemma":0.00005387112,"threshold_uncertainty_score":0.45744234},"labels":[],"label_agreement":null},{"id":"W2100616870","doi":"10.1128/jb.00150-08","title":"Identification of the Origin of Transfer (<i>oriT</i>) and a New Gene Required for Mobilization of the SXT/R391 Family of Integrating Conjugative Elements","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Biology; Genetics; Mobilization; Identification (biology); Gene; Computational biology; Gene transfer","score_opus":0.02199723259365993,"score_gpt":0.2577491895638612,"score_spread":0.2357519569702013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100616870","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958555,0.00032440055,0.0031065221,0.00015715578,0.00025668467,0.00022645753,0.000066980116,5.873238e-7,0.0000057278417],"genre_scores_gemma":[0.998136,0.00062761985,0.00110642,0.000027497692,0.000061382394,0.0000024970311,0.000008724955,0.0000072053517,0.000022640681],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987959,0.00010044952,0.0008345197,0.00010766888,0.000074488395,0.00008694499],"domain_scores_gemma":[0.9985186,0.00002498574,0.0008779147,0.00018973323,0.0003694678,0.000019331317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002625424,0.000087343105,0.00029329414,0.00004423589,0.000030240995,0.000001721255,0.00023415468,0.00018323146,0.0000021703993],"category_scores_gemma":[0.00015274809,0.000053548913,0.00013123215,0.0001027905,0.00033813322,0.000005180048,0.00005274526,0.00006861179,1.6608166e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024727886,0.00003971186,0.0050827553,0.000032959877,0.00008881261,7.4607186e-8,0.00018389508,0.000009512372,0.993109,0.00012417308,0.00003237749,0.0010494693],"study_design_scores_gemma":[0.00080520415,0.00081347744,0.0415604,0.000036245678,0.00005040929,0.000027615364,0.000104569546,0.000026161095,0.955846,0.00019116444,0.00049399777,0.000044726352],"about_ca_topic_score_codex":0.00001899311,"about_ca_topic_score_gemma":0.000015493615,"teacher_disagreement_score":0.03726295,"about_ca_system_score_codex":0.00000706054,"about_ca_system_score_gemma":0.00016779953,"threshold_uncertainty_score":0.21836613},"labels":[],"label_agreement":null},{"id":"W2100959921","doi":"10.1099/mic.0.030510-0","title":"Truncation in the core oligosaccharide of lipopolysaccharide affects flagella-mediated motility in Pseudomonas aeruginosa PAO1 via modulation of cell surface attachment","year":2009,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Flagellin; Rhamnose; Flagellum; Motility; Pseudomonas aeruginosa; Swarming motility; Mutant; Microbiology; Biology; Lipopolysaccharide; Biofilm; Cell biology; Biochemistry; Bacteria; Mannose; Gene; Quorum sensing; Genetics; Immunology","score_opus":0.008704100879245167,"score_gpt":0.23291560432971808,"score_spread":0.22421150345047292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100959921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985028,0.00029959754,0.00029674728,0.0002899935,0.00011023295,0.00040076885,0.00006014894,0.000005869935,0.000033860477],"genre_scores_gemma":[0.9987329,0.00017270587,0.00047907195,0.00014231958,0.000028494902,0.0000052504383,0.00041895953,0.0000072111807,0.00001304134],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987587,0.00016822269,0.00042204227,0.00034395,0.000046879588,0.0002602487],"domain_scores_gemma":[0.9992589,0.00003301245,0.0002308014,0.00040088236,0.000055612352,0.000020843907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041065132,0.00017018277,0.00028468136,0.000088394794,0.000019011366,0.0000036218833,0.00030005435,0.0004440607,0.000008767688],"category_scores_gemma":[0.00003878846,0.00013950512,0.000067374196,0.00017339338,0.00013165506,0.0000029423738,0.00006433961,0.00014123238,0.0000020438363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011169268,0.0002218999,0.010964916,0.000020215357,0.0000075269763,0.0000015553574,0.000097013784,0.0002685948,0.9875288,0.000025493317,0.000037509806,0.00071475504],"study_design_scores_gemma":[0.00066710846,0.0004945303,0.058953833,0.0000102350805,0.000007897517,0.000010243443,0.000039466915,0.00022433705,0.93922096,0.00010892538,0.00015432757,0.000108155386],"about_ca_topic_score_codex":0.00014795332,"about_ca_topic_score_gemma":0.00029271113,"teacher_disagreement_score":0.04830789,"about_ca_system_score_codex":0.000022842876,"about_ca_system_score_gemma":0.000045098666,"threshold_uncertainty_score":0.5688854},"labels":[],"label_agreement":null},{"id":"W2101191100","doi":"10.1073/pnas.0910023106","title":"Reconstitution of bacterial outer membrane TonB-dependent transporters in planar lipid bilayer membranes","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Purdue University","keywords":"Periplasmic space; Bacterial outer membrane; Biophysics; Lipid bilayer; Colicin; Biochemistry; Chemistry; Membrane; Transmembrane protein; Urea; Ion channel; Porin; Extracellular; Biology; Escherichia coli","score_opus":0.021093137947436065,"score_gpt":0.2612206198153713,"score_spread":0.24012748186793526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101191100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99644566,0.000053616575,8.731756e-7,0.0023665414,0.00005273572,0.00011679753,0.000028103137,0.0000023886112,0.00093331485],"genre_scores_gemma":[0.99912995,0.00016366904,0.00041614106,0.00012395829,0.00011059256,0.000002111565,0.000001703367,0.0000018904359,0.000050010603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990154,0.0000048816014,0.0003205518,0.0002038526,0.0003422614,0.000113066366],"domain_scores_gemma":[0.9996015,0.0000062333265,0.00024216509,0.0000115004605,0.00012161431,0.000016998847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055025076,0.000079684,0.000141264,0.00011145256,0.000034811965,0.0000067593023,0.00042607682,0.000191461,0.0000081773405],"category_scores_gemma":[0.0000649231,0.000056254048,0.000059803104,0.00020533601,0.00043556266,0.000015082765,0.00002151842,0.00007441998,1.5216834e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000084996216,0.00004336286,0.0007201906,0.000023116734,0.000007683056,7.896715e-9,0.000039457092,0.000036898706,0.9972018,0.0013429476,0.0000577709,0.0004417935],"study_design_scores_gemma":[0.00027075916,0.00014900432,0.007945221,0.00003209554,0.000006643731,0.0000069759435,0.000046441233,0.000018182596,0.98965085,0.0010990783,0.00070990104,0.0000648752],"about_ca_topic_score_codex":0.000004762644,"about_ca_topic_score_gemma":9.1719863e-7,"teacher_disagreement_score":0.0075509525,"about_ca_system_score_codex":0.0000073873503,"about_ca_system_score_gemma":0.000030768922,"threshold_uncertainty_score":0.22939736},"labels":[],"label_agreement":null},{"id":"W2101337383","doi":"10.1023/a:1023485632520","title":"Identification and mutational studies of conserved amino acids in the outer membrane receptor protein, FepA, which affect transport but not binding of ferric-enterobactin in Escherichia coli","year":2003,"lang":"en","type":"article","venue":"BioMetals","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Center for Research Resources; National Institute of General Medical Sciences","keywords":"Siderophore; Enterobactin; Periplasmic space; Bacterial outer membrane; Ferrichrome; Biochemistry; Ferric; Escherichia coli; Chemistry; Biology; Protein structure; Binding site; Ligand (biochemistry); Biophysics; Receptor; Gene","score_opus":0.028158256161809947,"score_gpt":0.27751566482246925,"score_spread":0.2493574086606593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101337383","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987394,0.00039610668,0.00002888244,0.00020044108,0.00008836363,0.00046533186,0.000060935796,0.0000026917617,0.000017822924],"genre_scores_gemma":[0.99901515,0.00021605118,0.0005158109,0.000024200135,0.000013040028,0.00005957639,0.00006533786,0.000008144101,0.00008265908],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895024,0.00016975841,0.00039983788,0.0002404972,0.00010511042,0.00013455206],"domain_scores_gemma":[0.9994992,0.000024395395,0.00018689186,0.00017980117,0.00009400638,0.000015710619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006795038,0.000119720775,0.00023888414,0.0001459148,0.000023266319,0.000008385954,0.00012518243,0.00017479033,0.0000074586537],"category_scores_gemma":[0.00016346306,0.00009310141,0.000042749303,0.00036379354,0.00015901633,0.0000049758337,0.00002390304,0.00006284675,8.217182e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009075051,0.000096830205,0.0065723155,0.000089002235,0.00006083692,0.0000010927942,0.00012899961,0.0000013001974,0.99274844,0.000097877666,0.0000050881117,0.00010743935],"study_design_scores_gemma":[0.00059341785,0.00020104072,0.043066286,0.000029965571,0.000017626448,0.0000041871695,0.00036807233,0.0000021355058,0.95534307,0.000022931272,0.00026104876,0.00009019518],"about_ca_topic_score_codex":0.000026848704,"about_ca_topic_score_gemma":0.00016395636,"teacher_disagreement_score":0.03740537,"about_ca_system_score_codex":0.000008870805,"about_ca_system_score_gemma":0.000038223916,"threshold_uncertainty_score":0.37965652},"labels":[],"label_agreement":null},{"id":"W2101451920","doi":"10.1139/w10-036","title":"Analysis of high-level S-layer protein secretion in<i>Caulobacter crescentus</i>","year":2010,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Caulobacter crescentus; Secretion; Transporter; S-layer; Biology; Messenger RNA; Chemistry; Cell biology; Biochemistry; Bacterial protein; Gene","score_opus":0.007230015493918703,"score_gpt":0.20153326207548639,"score_spread":0.1943032465815677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101451920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984929,0.00017030755,0.00010407296,0.00041291292,0.00048223545,0.00009469205,0.00020022503,0.0000010294542,0.000041609823],"genre_scores_gemma":[0.99863863,0.000030424982,0.00081974687,0.00014891515,0.00013655533,0.0000016503271,0.0001399094,0.000010864459,0.00007329724],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989809,0.000065841516,0.00044730693,0.000187256,0.000026974132,0.0002917182],"domain_scores_gemma":[0.999089,0.000005622256,0.00028670058,0.00025284788,0.0002081464,0.00015769423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026981867,0.00012784186,0.00034038653,0.0005561153,0.000026970622,0.000009864916,0.00031682692,0.00054592325,0.00016269674],"category_scores_gemma":[0.0000868296,0.00011571315,0.00015502906,0.0002972354,0.00022244973,0.0000030428375,0.000032446173,0.00029413984,0.0000023819168],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052068826,0.000020548934,0.012470849,0.000004526402,0.0002284144,0.000012167502,0.000017696311,0.000013854657,0.9860707,0.000108167,0.0002211503,0.0007798804],"study_design_scores_gemma":[0.00060392445,0.0003736022,0.053754274,0.000013295691,0.00013602088,0.0001222262,0.000020482601,0.0000036024728,0.9012477,0.00006286862,0.04349599,0.00016601417],"about_ca_topic_score_codex":0.0018102473,"about_ca_topic_score_gemma":0.13407248,"teacher_disagreement_score":0.13226223,"about_ca_system_score_codex":0.000020688465,"about_ca_system_score_gemma":0.00049642357,"threshold_uncertainty_score":0.8817285},"labels":[],"label_agreement":null},{"id":"W2102048613","doi":"10.1128/mbio.00158-10","title":"Interactions of the Transmembrane Polymeric Rings of the Salmonella enterica Serovar Typhimurium Type III Secretion System","year":2010,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Shandong Academy of Sciences","keywords":"Salmonella enterica; Type three secretion system; Effector; Transmembrane protein; Secretion; Bacterial outer membrane; Inner membrane; Transmembrane domain; Cell biology; Mutant; Translocon; Biology; Chemistry; Biochemistry; Bacteria; Membrane; Salmonella; Membrane protein; Escherichia coli; Genetics; Gene","score_opus":0.004135899278934343,"score_gpt":0.20067569725896772,"score_spread":0.19653979798003338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102048613","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971571,0.00007338354,0.00005398206,0.00033124807,0.001592375,0.00013246162,0.000019289862,0.0000073658184,0.0006327799],"genre_scores_gemma":[0.9992707,0.00002819994,0.00007268305,0.000041335934,0.000116258016,0.0000034979948,0.000009482424,0.000010448511,0.00044742506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946547,0.00003272548,0.00018498648,0.00014507779,0.00006546808,0.00010628629],"domain_scores_gemma":[0.9993084,0.000004153053,0.00014028003,0.00044200214,0.00008682107,0.00001836294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059113987,0.00008617103,0.00011028673,0.000018679473,0.000050555,0.000005139427,0.00030264436,0.00016113186,0.000036832254],"category_scores_gemma":[0.000017575861,0.000053129083,0.000100293546,0.0001466824,0.00015862545,0.0000012735798,0.00011069137,0.00013575441,0.0000028095608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049781196,0.000029973997,0.0005289114,0.000027591732,0.000025693105,7.3728145e-8,0.000028537308,0.0000017301759,0.99863976,0.00008792637,0.000101189726,0.00047880656],"study_design_scores_gemma":[0.00018276901,0.00010549773,0.005847661,0.00001990671,0.000025240271,0.000017922963,0.00004653992,0.00003503619,0.97859555,0.0000066146185,0.015057307,0.000059945996],"about_ca_topic_score_codex":0.000060447,"about_ca_topic_score_gemma":0.00007296493,"teacher_disagreement_score":0.020044226,"about_ca_system_score_codex":0.000004431613,"about_ca_system_score_gemma":0.000034987082,"threshold_uncertainty_score":0.2166541},"labels":[],"label_agreement":null},{"id":"W2102154042","doi":"10.1111/j.1365-2958.2012.08177.x","title":"Direct binding targets of the stringent response alarmone (p)ppGpp","year":2012,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"RIKEN; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Toronto","keywords":"Stringent response; Biology; Biochemistry; GTPase; RNA polymerase; Transcription (linguistics); Escherichia coli; Nucleotide; Transcription factor; Cell biology; In silico; DNA-binding protein; Gene","score_opus":0.017091003649903614,"score_gpt":0.25693854285484097,"score_spread":0.23984753920493734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102154042","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.018061165,0.9795971,0.000044827473,0.000053428557,0.0009480824,0.00071329525,0.00045971453,0.000017146147,0.000105238556],"genre_scores_gemma":[0.011305557,0.98688436,0.0002925524,0.0000797612,0.0001818904,0.000060905866,0.00063635415,0.00010702854,0.00045159223],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99698293,0.0009202048,0.000700609,0.00068690104,0.000068517744,0.00064081425],"domain_scores_gemma":[0.9979606,0.000033802084,0.0006169615,0.001232225,0.00007482092,0.00008158895],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005511637,0.00056750485,0.0011973777,0.00016146094,0.00008664553,0.00001264679,0.0010076299,0.0016550615,0.00003091046],"category_scores_gemma":[0.00012238216,0.00039666536,0.0008373029,0.0002807244,0.0003774819,0.0000012501332,0.0011061766,0.00037129738,0.00003520928],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006530635,0.00006733122,0.0000048913294,0.0005444715,0.00037522026,0.0000053121507,0.000005261981,4.81718e-7,0.95562124,0.000019689602,0.00027922404,0.043011572],"study_design_scores_gemma":[0.0001334341,0.0001548674,0.0000032552089,0.0002532394,0.00035014527,0.00012592645,0.0000017160008,2.9516206e-8,0.33157587,0.0000012207838,0.667119,0.00028123008],"about_ca_topic_score_codex":0.0000059801228,"about_ca_topic_score_gemma":0.00000472554,"teacher_disagreement_score":0.66683984,"about_ca_system_score_codex":0.000049276507,"about_ca_system_score_gemma":0.000244691,"threshold_uncertainty_score":0.99984854},"labels":[],"label_agreement":null},{"id":"W2102824683","doi":"10.1099/mic.0.025528-0","title":"Comparative analysis of Caulobacter chromosome replication origins","year":2009,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; McGill University; Georgetown University","keywords":"DnaA; Caulobacter crescentus; Biology; Origin of replication; Genetics; DNA replication; Origin recognition complex; Control of chromosome duplication; SeqA protein domain; Pre-replication complex; Eukaryotic DNA replication; DNA; Cell cycle; Gene","score_opus":0.010847512844771406,"score_gpt":0.2658536425422441,"score_spread":0.25500612969747266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102824683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99851125,0.00023018492,0.00023591933,0.00032205987,0.00007850748,0.000106355365,0.00012211382,0.000011452666,0.00038212293],"genre_scores_gemma":[0.99766076,0.000087454355,0.0005751837,0.00031451497,0.000063463165,0.000003779216,0.0011604234,0.000003443776,0.00013098745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912935,0.00004625458,0.00023894124,0.0003868368,0.000018080786,0.00018053855],"domain_scores_gemma":[0.9991779,0.000004792389,0.0001348008,0.00056747714,0.000086947904,0.000028122253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008532294,0.00011953924,0.00031793633,0.00013148857,0.000027928345,0.000004771216,0.00019927861,0.00029427526,0.000045784287],"category_scores_gemma":[0.000012577838,0.00010625314,0.00012282806,0.00031510438,0.00012502522,0.0000011742356,0.000048564772,0.000059947954,0.000008754865],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046687856,0.000065793414,0.00068351236,0.0000013437683,0.00032285828,3.8644538e-7,0.000022405542,0.00001724781,0.9972525,0.00039531413,0.00048319512,0.00070872117],"study_design_scores_gemma":[0.00018764204,0.00047526154,0.017138489,0.0000014489933,0.00015122892,0.000010862767,0.000008638159,0.000012890184,0.8903304,0.000029577657,0.091537155,0.000116441246],"about_ca_topic_score_codex":0.000014227309,"about_ca_topic_score_gemma":0.000061261795,"teacher_disagreement_score":0.10692217,"about_ca_system_score_codex":0.000014893304,"about_ca_system_score_gemma":0.000028575154,"threshold_uncertainty_score":0.4332877},"labels":[],"label_agreement":null},{"id":"W2103044506","doi":"10.1128/aac.47.11.3485-3493.2003","title":"Controlled Expression of an <i>rpoS</i> Antisense RNA Can Inhibit RpoS Function in <i>Escherichia coli</i>","year":2003,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"rpoS; Escherichia coli; Microbiology; Enterobacteriaceae; Biology; Function (biology); Antisense RNA; RNA; Gene expression; Cell biology; Genetics; Gene","score_opus":0.0055664481393916405,"score_gpt":0.21084593919354955,"score_spread":0.2052794910541579,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103044506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99883485,0.00008115725,0.00007332415,0.00026115,0.00016901905,0.000355048,0.0000210988,0.000009866563,0.0001945125],"genre_scores_gemma":[0.9948802,0.001390035,0.0005518168,0.0028991092,0.000066880115,0.000007983965,0.00005716443,0.000027669783,0.00011915005],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989447,0.00008368621,0.00030741707,0.00035859988,0.000066712295,0.00023886198],"domain_scores_gemma":[0.99950385,0.000003968966,0.00014261405,0.0002395339,0.00004719508,0.000062866595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001392667,0.0001977423,0.0003146465,0.000055020228,0.000055198052,0.000023221344,0.0000976718,0.00030951068,0.000026292115],"category_scores_gemma":[0.000010376064,0.00017465156,0.00007276157,0.00010316085,0.00010235053,0.00000538525,0.000032192373,0.000091936585,7.15876e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00084441906,0.00024289954,0.002712056,0.000015521378,0.000028311264,0.0000026277155,0.000043443233,0.0000044167655,0.9942203,0.000024371526,0.0008228869,0.001038723],"study_design_scores_gemma":[0.0062930854,0.0004801,0.0028983715,0.000027782187,0.000014872138,0.0000075828234,0.000029477047,0.000011090446,0.9737549,0.000040237257,0.016239138,0.00020336822],"about_ca_topic_score_codex":0.000035828678,"about_ca_topic_score_gemma":0.000066786764,"teacher_disagreement_score":0.020465428,"about_ca_system_score_codex":0.00000503062,"about_ca_system_score_gemma":0.00004417345,"threshold_uncertainty_score":0.7122084},"labels":[],"label_agreement":null},{"id":"W2103537794","doi":"10.1002/cbic.201300033","title":"A Highly Efficient Molecular Cloning Platform that Utilises a Small Bacterial Toxin Gene","year":2013,"lang":"en","type":"article","venue":"ChemBioChem","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Cloning (programming); Molecular cloning; Computational biology; Escherichia coli; Biology; Gene; Molecular biology; Chemistry; Genetics; Computer science; Gene expression","score_opus":0.012854501581412662,"score_gpt":0.20504249268985172,"score_spread":0.19218799110843907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103537794","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964413,0.00066241086,0.000373705,0.00030628688,0.00046438022,0.00040785543,0.000023953142,0.000063405954,0.0012566787],"genre_scores_gemma":[0.9954692,0.00009499597,0.0028233489,0.00033137738,0.0003829469,0.000092575065,0.0003074511,0.000054454016,0.00044360966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99830586,0.000020417807,0.00028840618,0.0006592724,0.00014149777,0.000584551],"domain_scores_gemma":[0.9989093,0.000007663305,0.00012957635,0.0006717621,0.0001085485,0.00017314791],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00010968812,0.00034521596,0.00026967848,0.000065496715,0.00009428492,0.000107518215,0.00045079426,0.0005905371,0.00014714482],"category_scores_gemma":[0.000057249745,0.00032472413,0.00017097748,0.00012449654,0.0001625171,0.0000035281826,0.00042808053,0.0001560659,0.00008859413],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057282086,0.000091550464,0.000062666026,0.000017979433,0.000061198094,0.0000060219772,0.00002699062,0.000008666262,0.9964472,0.00007687224,0.0006488705,0.0024946884],"study_design_scores_gemma":[0.0007680184,0.0002261219,0.0004213695,0.00001474039,0.000024363997,0.000037981143,0.000054853423,0.00006687258,0.98358756,0.00006030832,0.014325815,0.0004119765],"about_ca_topic_score_codex":0.00005296569,"about_ca_topic_score_gemma":0.000008420622,"teacher_disagreement_score":0.013676945,"about_ca_system_score_codex":0.000027708198,"about_ca_system_score_gemma":0.0000790839,"threshold_uncertainty_score":0.9999205},"labels":[],"label_agreement":null},{"id":"W2103556965","doi":"10.11606/d.42.2012.tde-25052012-091050","title":"Identificação de fatores de transcrição e sinais celulares que regulam a expressão do gene cspC em Caulobacter crescentus.","year":2012,"lang":"pt","type":"dissertation","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Consortium canadien en neurodégénérescence associée au vieillissement","keywords":"Caulobacter crescentus; Transposable element; Biology; Molecular biology; Physics; Gene; Genetics; Genome; Bacterial protein","score_opus":0.009022989755085368,"score_gpt":0.24623421822840588,"score_spread":0.23721122847332052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103556965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9802805,0.0130979195,0.0025358796,0.00022790467,0.0019194924,0.00088375644,0.00051309017,0.00009375605,0.0004477018],"genre_scores_gemma":[0.97610873,0.0053859204,0.0015655956,0.0002486483,0.0010598369,0.00017553312,0.005377268,0.0002414567,0.009837024],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99444866,0.00045976107,0.0011146299,0.0016242497,0.0004194892,0.0019332332],"domain_scores_gemma":[0.9967823,0.00002626113,0.0005405826,0.0016449568,0.00039376205,0.00061216083],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0006274465,0.0012336607,0.000933101,0.00028847772,0.0003599452,0.0004251432,0.001255604,0.0044835224,0.0008610172],"category_scores_gemma":[0.00012402817,0.0012345603,0.0007689564,0.00025860342,0.00026138593,0.00001862616,0.0002528534,0.00076120853,0.00007678264],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006803474,0.00049439695,0.0019322915,0.0004999238,0.0005673445,0.00004100057,0.0012711281,0.0000072199036,0.98193085,0.00015163727,0.0026052436,0.009818634],"study_design_scores_gemma":[0.0009983007,0.00040652923,0.01591628,0.00023140038,0.00051260664,0.000111586,0.0019260733,0.000041048483,0.9483618,0.00010836737,0.029961994,0.0014239773],"about_ca_topic_score_codex":0.00055029336,"about_ca_topic_score_gemma":0.001692802,"teacher_disagreement_score":0.033568997,"about_ca_system_score_codex":0.00015711786,"about_ca_system_score_gemma":0.0006303273,"threshold_uncertainty_score":0.99901044},"labels":[],"label_agreement":null},{"id":"W2104236199","doi":"10.1111/j.1365-2958.2009.06698.x","title":"Characterization of staphyloferrin A biosynthetic and transport mutants in <i>Staphylococcus aureus</i>","year":2009,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":163,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Western University","funders":"","keywords":"Siderophore; Operon; Biology; Locus (genetics); Mutant; Staphylococcus aureus; Virulence; Biochemistry; ATP-binding cassette transporter; Gene; Genetics; Transporter; Bacteria","score_opus":0.0031650974763804698,"score_gpt":0.19210665611606947,"score_spread":0.188941558639689,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104236199","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982969,0.00040061123,0.000473716,0.00033396934,0.000069851754,0.00023324198,0.00009613514,0.000010110795,0.000085466236],"genre_scores_gemma":[0.99867237,0.0002692532,0.0002863782,0.00042833143,0.00002216841,0.000005546879,0.00028592208,0.000014339653,0.00001568477],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891853,0.00006428708,0.00031423665,0.00039806636,0.000029023924,0.00027587713],"domain_scores_gemma":[0.99952877,0.000002598171,0.00010302224,0.0002839075,0.000040405677,0.000041297906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010492102,0.00018388825,0.00026040035,0.00013221192,0.000019144849,0.000004465155,0.00016904777,0.00040236503,0.000007927941],"category_scores_gemma":[0.000012434477,0.00018216785,0.00006112557,0.00014585684,0.00015777204,0.000002046378,0.000046121466,0.00009696836,0.0000012803285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000098419965,0.00008780026,0.0010591378,0.000010408663,0.000017670754,0.000013022821,0.000024702098,0.0000021183298,0.9958085,0.00012471943,0.0000037028178,0.0027498398],"study_design_scores_gemma":[0.0005617855,0.0005438226,0.0126728695,0.000014483603,0.000011297148,0.000022248165,0.000007873996,0.0000030738195,0.97975796,0.000079569545,0.0061383597,0.00018665046],"about_ca_topic_score_codex":0.000008516524,"about_ca_topic_score_gemma":0.000025527166,"teacher_disagreement_score":0.016050491,"about_ca_system_score_codex":0.0000065740473,"about_ca_system_score_gemma":0.0000321525,"threshold_uncertainty_score":0.7428589},"labels":[],"label_agreement":null},{"id":"W2104299607","doi":"10.1046/j.1365-2958.2002.03171.x","title":"Glycosylation of <i>Pseudomonas aeruginosa</i> 1244 pilin: glycan substrate specificity","year":2002,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Pilin; Pilus; Biology; Gene cluster; Glycan; Glycosylation; Microbiology; Plasmid; Pseudomonas aeruginosa; Escherichia coli; Biochemistry; Molecular biology; Gene; Glycoprotein; Bacteria; Genetics","score_opus":0.009027932555391326,"score_gpt":0.1966837720097497,"score_spread":0.18765583945435838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104299607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944832,0.0016887296,0.0013076762,0.0003567063,0.00032589256,0.00023633084,0.00009972184,0.000026253241,0.0014755242],"genre_scores_gemma":[0.9971901,0.00044299552,0.0013577762,0.00030079082,0.00012495628,0.000009631881,0.000323027,0.00003230822,0.00021841584],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984215,0.00011658226,0.00042820387,0.00056138064,0.0000562744,0.00041609677],"domain_scores_gemma":[0.9989992,0.000008421648,0.00020377792,0.00059661106,0.00012155567,0.00007044171],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012502234,0.00026736275,0.00031601364,0.00009209075,0.000057034384,0.000012948107,0.00036680757,0.0005963478,0.00016917691],"category_scores_gemma":[0.000035133446,0.00026686507,0.00016953897,0.00017122245,0.0003352303,0.0000025551437,0.0001747311,0.0001625132,0.000049898437],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000075326636,0.0001171823,0.0005315268,0.000013233095,0.00006443985,0.000013105506,0.0000134194,0.000022419357,0.99646163,0.0003838697,0.0007808835,0.0015229769],"study_design_scores_gemma":[0.0006069938,0.00052721,0.0003851301,0.000006559657,0.000022921691,0.00011164992,0.000008381003,0.000023780074,0.92774874,0.000088280336,0.07020597,0.0002643972],"about_ca_topic_score_codex":0.000025435984,"about_ca_topic_score_gemma":0.000040983057,"teacher_disagreement_score":0.06942508,"about_ca_system_score_codex":0.000014878757,"about_ca_system_score_gemma":0.000024091112,"threshold_uncertainty_score":0.99997836},"labels":[],"label_agreement":null},{"id":"W2104610002","doi":"10.1002/pro.2636","title":"Structural insight into effector proteins of Gram‐negative bacterial pathogens that modulate the phosphoproteome of their host","year":2015,"lang":"en","type":"review","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Effector; Biology; Phosphorylation; Cell biology; Dephosphorylation; Phosphatase; Kinase; Protein phosphorylation; Serine; Protein kinase A","score_opus":0.025709688273492994,"score_gpt":0.2768672302255399,"score_spread":0.25115754195204687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104610002","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.36231714,0.63126105,0.000041619613,0.000036376663,0.00055346487,0.0052784737,0.00043294716,0.000016495687,0.00006239153],"genre_scores_gemma":[0.44600993,0.5490823,0.0033195133,0.000013657602,0.00043447356,0.0008083124,0.0001629203,0.0000912678,0.00007763322],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973566,0.00025113486,0.0006320325,0.0008392604,0.00045871516,0.0004622479],"domain_scores_gemma":[0.9972299,0.000020154854,0.000996023,0.0012028828,0.0004299883,0.00012107185],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009897755,0.00052306213,0.001127257,0.00015308282,0.00016721638,0.000060794304,0.0018296506,0.00060561224,0.00001611547],"category_scores_gemma":[0.000315772,0.0002928772,0.00033075715,0.00073668384,0.0023489236,0.000011913544,0.0010802884,0.00031253367,0.0000042922866],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005637892,0.00002156361,0.0000020522534,0.0010441133,0.000054657346,8.9963453e-7,0.00013068655,3.15128e-7,0.8000441,0.00003710517,0.0000029197697,0.19860518],"study_design_scores_gemma":[0.00024948706,0.0011010726,0.000027485168,0.00094268966,0.00007416774,0.000017811333,0.00002009274,0.000005848836,0.864778,0.0001840734,0.13221954,0.0003797479],"about_ca_topic_score_codex":0.00008295238,"about_ca_topic_score_gemma":0.000029139741,"teacher_disagreement_score":0.19822542,"about_ca_system_score_codex":0.00005525939,"about_ca_system_score_gemma":0.0010327167,"threshold_uncertainty_score":0.9999523},"labels":[],"label_agreement":null},{"id":"W2104649471","doi":"10.1128/mbio.00142-11","title":"Lipopolysaccharide (LPS) Inner-Core Phosphates Are Required for Complete LPS Synthesis and Transport to the Outer Membrane in Pseudomonas aeruginosa PAO1","year":2011,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Bacterial outer membrane; Lipopolysaccharide; Lipid A; Inner membrane; Pseudomonas aeruginosa; Biochemistry; Phospholipid; Kinase; Membrane; Phosphorylation; Chemistry; Bacteria; Hexose; Biology; Microbiology; Escherichia coli; Enzyme","score_opus":0.0325126130439148,"score_gpt":0.2298268929748888,"score_spread":0.197314279930974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104649471","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967384,0.00037266247,0.00032761207,0.001566098,0.00020934206,0.00049179123,0.0001951001,0.000017999384,0.00008103314],"genre_scores_gemma":[0.99696255,0.00025453666,0.001609878,0.00068227126,0.00013855883,0.00014976352,0.000045439916,0.000027177519,0.00012980109],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886626,0.000022925216,0.00026307246,0.00044191143,0.00006603592,0.0003397699],"domain_scores_gemma":[0.9993654,0.00001844166,0.000080294034,0.00041137848,0.00004909341,0.00007539591],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001973867,0.00020357034,0.00024499762,0.000054401782,0.00007850601,0.0000146154,0.00031537787,0.00028137222,0.00002606212],"category_scores_gemma":[0.0000556599,0.00015328596,0.00007892633,0.00007981221,0.00013237233,0.0000033840358,0.00009858918,0.00007940539,0.000005778401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032731215,0.00006004209,0.0051762178,0.000029429359,0.000047032656,0.000008029383,0.00020636515,0.0000014346813,0.9879311,0.00022119514,0.00028609388,0.0057057566],"study_design_scores_gemma":[0.00042508802,0.00023905354,0.00910983,0.000028246252,0.000034944915,0.000013917722,0.00014805337,0.000016936694,0.96523905,0.00014074863,0.02435789,0.0002462645],"about_ca_topic_score_codex":0.00020190499,"about_ca_topic_score_gemma":0.0010889132,"teacher_disagreement_score":0.024071798,"about_ca_system_score_codex":0.000007809662,"about_ca_system_score_gemma":0.000022435393,"threshold_uncertainty_score":0.625082},"labels":[],"label_agreement":null},{"id":"W2104815620","doi":"10.1128/jb.186.1.179-191.2004","title":"Fine-Tuning in Regulation of Clp Protein Content in<i>Bacillus subtilis</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; Bundesministerium für Bildung und Forschung; University of Pretoria; Harvard University","keywords":"Bacillus subtilis; Biology; Proteolysis; Immunoprecipitation; Heat shock protein; Mutant; Western blot; ATPase; Cell biology; Protein subunit; Degradation (telecommunications); Exponential growth; Biochemistry; Biophysics; Molecular biology; Enzyme; Bacteria; Genetics; Gene","score_opus":0.01660957681725364,"score_gpt":0.22371689077511042,"score_spread":0.20710731395785678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104815620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99877805,0.00034025576,0.000111665446,0.00021312096,0.00023085285,0.00013022758,0.0000039084107,0.0000011656612,0.00019075075],"genre_scores_gemma":[0.9984836,0.000083465595,0.0012032153,0.000043824493,0.0000674111,0.0000034012683,0.0000088611705,0.000009913837,0.000096279844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99854505,0.00022529323,0.0008028271,0.00016255045,0.00006835257,0.00019589925],"domain_scores_gemma":[0.9990918,0.000012621084,0.00051938125,0.00019386789,0.00014521804,0.000037104182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064645655,0.000118352174,0.0003694239,0.00017480923,0.000011004475,0.000005482261,0.000164018,0.00034945813,0.000037862374],"category_scores_gemma":[0.00030545433,0.000101170575,0.00008973783,0.00011303117,0.00010423893,0.0000041311723,0.000044782555,0.00019016897,9.713411e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025866777,0.00007045369,0.015880935,0.000011288764,0.00001699022,0.000008749702,0.000020053823,0.00003518779,0.9819735,0.00031201434,0.00002528431,0.0013868375],"study_design_scores_gemma":[0.0015407943,0.0012216576,0.13501489,0.00005411148,0.000006690166,0.00015749487,0.000056602454,0.000009333556,0.8470826,0.0003013325,0.014428544,0.00012591406],"about_ca_topic_score_codex":0.00001890232,"about_ca_topic_score_gemma":0.00016484596,"teacher_disagreement_score":0.13489091,"about_ca_system_score_codex":0.00002346656,"about_ca_system_score_gemma":0.00010558131,"threshold_uncertainty_score":0.41256163},"labels":[],"label_agreement":null},{"id":"W2104816241","doi":"10.1093/protein/gzp082","title":"Reengineering natural design by rational design and in vivo library selection: the HLH subdomain in bHLHZ proteins is a unique requirement for DNA-binding function","year":2010,"lang":"en","type":"article","venue":"Protein Engineering Design and Selection","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; University of Toronto; Ontario Innovation Trust","keywords":"Leucine zipper; Mutant; Biology; Genetics; DNA-binding protein; Computational biology; Transcription factor; Gene","score_opus":0.006733209985789913,"score_gpt":0.18687455278213533,"score_spread":0.18014134279634542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104816241","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.36798608,0.00018236114,0.62986434,0.00025882034,0.00008574901,0.0015814852,0.000002449277,0.00003751674,0.0000011855495],"genre_scores_gemma":[0.9101171,0.00008641287,0.08855956,0.00003852352,0.00014980082,0.0008395422,0.000020537225,0.000038493934,0.0001500197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989777,0.00007988713,0.00022938542,0.00036209152,0.000076093456,0.00027480305],"domain_scores_gemma":[0.9997492,0.000036815647,0.000055900033,0.000084636034,0.000031366348,0.000042074764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056489406,0.00020205353,0.00013470738,0.00014916394,0.00010774345,0.000076574666,0.00008193231,0.00030832877,0.0000066292773],"category_scores_gemma":[0.00006616859,0.00018392768,0.000025271056,0.00026064555,0.000030917443,0.000029845749,0.0000332731,0.00026443263,1.6987924e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035836434,0.000024429506,0.00007669483,0.000032190906,0.000020138761,3.3764474e-7,0.000024465922,0.0034999067,0.9949712,0.0001286237,0.00018632026,0.0006772904],"study_design_scores_gemma":[0.0005562095,0.0004975184,0.00019889283,0.000027081644,0.0000070260376,0.000021099513,0.000004818465,0.1221878,0.8732353,0.00015946115,0.002902261,0.00020255068],"about_ca_topic_score_codex":0.0000053352815,"about_ca_topic_score_gemma":0.000011965705,"teacher_disagreement_score":0.542131,"about_ca_system_score_codex":0.000027008251,"about_ca_system_score_gemma":0.000060384333,"threshold_uncertainty_score":0.7500353},"labels":[],"label_agreement":null},{"id":"W2104838106","doi":"10.1128/jb.182.20.5925-5930.2000","title":"On the Architecture of the Gram-Negative Bacterial Murein Sacculus","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Dalhousie University; St. Francis Xavier University","funders":"","keywords":"Peptidoglycan; Glycan; Biology; Cell wall; Bacteria; Gram-negative bacteria; Bacterial cell structure; Escherichia coli; Biophysics; Gram; Pseudomonas aeruginosa; Biochemistry; Genetics; Gene","score_opus":0.005775446545860454,"score_gpt":0.21057483144381597,"score_spread":0.20479938489795552,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104838106","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957644,0.0000750959,0.00002702523,0.0028415085,0.0007003524,0.00013693149,0.000027137085,0.0000023194366,0.0004252547],"genre_scores_gemma":[0.9982601,0.0001634566,0.00020849725,0.0005967253,0.00054258306,0.0000029236814,0.000005042008,0.000014170789,0.00020654926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987919,0.0002924504,0.00043734227,0.0001624174,0.000106064304,0.00020982456],"domain_scores_gemma":[0.99897826,0.00006599889,0.00040550588,0.00040224046,0.00010546872,0.000042542553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027139304,0.00016463395,0.0002796256,0.000041809402,0.00007605616,0.000013690365,0.0006215929,0.00032693014,0.0005036931],"category_scores_gemma":[0.00021036036,0.00008114534,0.00024116911,0.00010043686,0.00039761583,0.000002113977,0.00010040517,0.00034321862,0.0000058426745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008056389,0.00005620794,0.00011907017,0.0000036623371,0.000104538536,0.0000026192392,0.0000496776,0.000053060394,0.98892254,0.00024774214,0.0008939071,0.008741321],"study_design_scores_gemma":[0.0010747954,0.0028215002,0.022795983,0.000041608764,0.000052550142,0.00039818053,0.000038716535,0.0000036745193,0.8749598,0.0028465856,0.09478058,0.00018599367],"about_ca_topic_score_codex":0.000008799847,"about_ca_topic_score_gemma":0.000020645552,"teacher_disagreement_score":0.11396272,"about_ca_system_score_codex":0.0000108494105,"about_ca_system_score_gemma":0.0001010414,"threshold_uncertainty_score":0.55150867},"labels":[],"label_agreement":null},{"id":"W2105073997","doi":"10.1016/j.pep.2004.07.016","title":"General co-expression vectors for the overexpression of heterodimeric protein complexes in Escherichia coli","year":2004,"lang":"en","type":"article","venue":"Protein Expression and Purification","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Allen Foundation; National Institute of Allergy and Infectious Diseases; University of Texas Southwestern Medical Center; Ryerson University; University of Michigan; Rita Allen Foundation; National Institutes of Health; Pew Charitable Trusts","keywords":"Escherichia coli; Plasmid; Cloning (programming); Expression vector; Cloning vector; Origin of replication; Biology; Recombinant DNA; Vector (molecular biology); Kanamycin; Computational biology; Multiple cloning site; Molecular biology; Gene; Genetics; Computer science","score_opus":0.014003828099321233,"score_gpt":0.25748281088653446,"score_spread":0.24347898278721322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105073997","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99354905,0.0007700784,0.0036329755,0.0003462865,0.000049514263,0.0015808122,0.000030478566,0.000013162146,0.000027671436],"genre_scores_gemma":[0.990943,0.00013913329,0.008035823,0.00003924176,0.0000989941,0.0005227739,0.00010789421,0.000019642546,0.000093488576],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894714,0.000077788856,0.0003076663,0.00035750278,0.000115206225,0.00019469256],"domain_scores_gemma":[0.9993077,0.000011161914,0.00021498888,0.00036028065,0.000059710528,0.000046173514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020573319,0.00016272001,0.00016287566,0.000054858538,0.0001311571,0.000023286362,0.00020917004,0.00026685954,0.000009014564],"category_scores_gemma":[0.00006717741,0.000112824266,0.000052893334,0.00009216969,0.00014108556,0.000007978202,0.00008517368,0.00010848737,8.615207e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031341007,0.00010184224,0.00010689163,0.000052240623,0.0000054703405,8.870682e-8,0.000055196644,0.000067580724,0.99756473,0.00021138247,0.000069135065,0.0014520022],"study_design_scores_gemma":[0.0010317392,0.00029436633,0.002800945,0.0001639961,0.0000041723233,9.563287e-7,0.00003927369,0.00007010535,0.9875409,0.00047166727,0.0074349497,0.0001469258],"about_ca_topic_score_codex":0.00003822031,"about_ca_topic_score_gemma":0.0000058549226,"teacher_disagreement_score":0.010023857,"about_ca_system_score_codex":0.000011471032,"about_ca_system_score_gemma":0.00004352779,"threshold_uncertainty_score":0.460084},"labels":[],"label_agreement":null},{"id":"W2105222452","doi":"10.1101/gr.2242604","title":"Regulog Analysis: Detection of Conserved Regulatory Networks Across Bacteria: Application to <i>Staphylococcus aureus</i>","year":2004,"lang":"en","type":"article","venue":"Genome Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Regulon; Biology; Computational biology; Gene; Genetics; Conserved sequence; Spurious relationship; Gene regulatory network; Comparative genomics; Regulatory sequence; Genome; Regulation of gene expression; Genomics; Gene expression; Peptide sequence; Computer science; Machine learning","score_opus":0.015229454385280745,"score_gpt":0.3015424217700757,"score_spread":0.28631296738479495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105222452","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.973679,0.00062543375,0.024752572,0.0002805017,0.000072313764,0.00047693276,0.000046801793,0.000017966604,0.00004846082],"genre_scores_gemma":[0.99839586,0.00023169979,0.00068570435,0.00006171133,0.00025831486,0.00010312382,0.00015910834,0.000022798482,0.00008165602],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99822724,0.00009982803,0.0003277719,0.00055788475,0.00023662255,0.0005506688],"domain_scores_gemma":[0.99844456,0.000010719534,0.000095237985,0.0009118696,0.00039537187,0.00014223444],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009531047,0.00014788746,0.00024777427,0.0002181631,0.000164629,0.000033923083,0.00043112654,0.00046669645,0.000008079078],"category_scores_gemma":[0.000051202867,0.00014872402,0.00013328259,0.0011852483,0.0002635957,0.0000028332174,0.00038839533,0.00021248234,0.000014087047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019907189,0.000059596627,0.00024944218,0.000014663087,0.00019203353,0.0000010157033,0.00003670749,0.0029176434,0.99350715,0.00005234828,0.000020262332,0.0027500482],"study_design_scores_gemma":[0.0004408008,0.00052548404,0.03831831,0.0000050441295,0.000033734417,0.0000022013332,0.00007839906,0.000037334656,0.9458253,0.000121557714,0.014444097,0.00016778144],"about_ca_topic_score_codex":0.00015145021,"about_ca_topic_score_gemma":0.00070372986,"teacher_disagreement_score":0.04768191,"about_ca_system_score_codex":0.00006076151,"about_ca_system_score_gemma":0.000098331606,"threshold_uncertainty_score":0.606479},"labels":[],"label_agreement":null},{"id":"W2105399848","doi":"10.1128/jb.183.11.3268-3275.2001","title":"Structural and Functional Analysis of the Phosphonoacetate Hydrolase ( <i>phnA</i> ) Gene Region in <i>Pseudomonas fluorescens</i> 23F","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Quest University Canada","funders":"University of Illinois at Chicago","keywords":"Biology; Pseudomonas fluorescens; Hydrolase; Escherichia coli; Molecular biology; Gene; Inducer; Gene product; Pseudomonas putida; Gene expression; Biochemistry; Enzyme; Genetics; Bacteria","score_opus":0.008570442175188953,"score_gpt":0.2060163478010784,"score_spread":0.19744590562588943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105399848","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99806875,0.0007202319,0.0000807338,0.00060723495,0.00041981618,0.00006756962,0.000012033964,0.0000016610635,0.000021954496],"genre_scores_gemma":[0.9979927,0.0013113319,0.00022842475,0.00024218668,0.00015060062,0.0000013168361,0.000019238902,0.000009507651,0.000044675915],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988723,0.00011979914,0.00052422844,0.00020219834,0.00008535791,0.0001961409],"domain_scores_gemma":[0.9990865,0.000016906954,0.00047230264,0.00025138064,0.00011838945,0.000054544194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019866289,0.00014478249,0.00039627202,0.0001842373,0.000040517625,0.000009722142,0.00020327713,0.00027848492,0.000015692001],"category_scores_gemma":[0.000053822267,0.000099534656,0.00020354436,0.00034123767,0.00025025936,0.000005802437,0.00014385894,0.00019571568,2.9132661e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005657956,0.000027006236,0.08274011,0.0000035019636,0.00030277105,0.000016395614,0.000018315726,0.00029177245,0.9146328,0.000019679619,0.00007955015,0.0013023289],"study_design_scores_gemma":[0.0011669502,0.00047583343,0.68067133,0.000010797778,0.0002749423,0.0010705013,0.000021765194,0.00018615741,0.31108838,0.0001231678,0.004761795,0.00014836602],"about_ca_topic_score_codex":0.00002571815,"about_ca_topic_score_gemma":0.0000942009,"teacher_disagreement_score":0.6035444,"about_ca_system_score_codex":0.0000154675,"about_ca_system_score_gemma":0.000066734414,"threshold_uncertainty_score":0.40589052},"labels":[],"label_agreement":null},{"id":"W2105532410","doi":"10.1111/j.1574-6968.2001.tb10761.x","title":"In vitro reconstruction of the biosynthetic pathway of peptidoglycan cytoplasmic precursor in Pseudomonas aeruginosa","year":2001,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Peptidoglycan; Pseudomonas aeruginosa; In vitro; Cytoplasm; Microbiology; Pseudomonadaceae; Chemistry; Pseudomonadales; Bacteria; Biology; Cell biology; Biochemistry; Cell wall; Genetics","score_opus":0.004625011463118635,"score_gpt":0.18695355564287489,"score_spread":0.18232854417975625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105532410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99726856,0.0001628472,0.000020866999,0.0016889761,0.0005145422,0.00023080384,0.000060321207,0.0000040378786,0.00004906975],"genre_scores_gemma":[0.99897414,0.00013896612,0.00036877187,0.0003678315,0.000053185722,0.000010496451,0.000033307235,0.000012490673,0.00004078052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885315,0.00013160906,0.00039051234,0.00032128955,0.000027558344,0.0002758672],"domain_scores_gemma":[0.9993738,0.000013589504,0.00020524953,0.00036455825,0.000025020725,0.000017776918],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001490934,0.00015657,0.00025673577,0.00013934376,0.000018930343,0.000002699455,0.00030819434,0.00035720953,0.00001340879],"category_scores_gemma":[0.000032866796,0.000126698,0.00009930897,0.00021203453,0.00059191353,0.0000027747699,0.00012797226,0.00016683398,0.0000027764804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020959208,0.000057688427,0.008700967,0.000009935732,0.00001792042,0.0000029887044,0.00003713485,0.00001985559,0.9885218,0.000010885063,0.00010363853,0.0023076003],"study_design_scores_gemma":[0.00064374856,0.000106004,0.0034160267,0.000029189914,0.0000059163863,0.00022712743,0.000030494992,0.000003971585,0.9909934,0.000024102555,0.004389973,0.00013003824],"about_ca_topic_score_codex":0.000072657735,"about_ca_topic_score_gemma":0.00023368445,"teacher_disagreement_score":0.0052849404,"about_ca_system_score_codex":0.000023278459,"about_ca_system_score_gemma":0.00004792353,"threshold_uncertainty_score":0.51665944},"labels":[],"label_agreement":null},{"id":"W2105795902","doi":"10.1128/jb.185.19.5882-5890.2003","title":"A Novel Outer Membrane Protein, Wzi, Is Involved in Surface Assembly of the<i>Escherichia coli</i>K30 Group 1 Capsule","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research; Wellcome Trust","keywords":"Biology; Escherichia coli; Bacterial outer membrane; Capsule; Microbiology; Escherichia coli Proteins; Group (periodic table); Membrane protein; Membrane; Biochemistry; Gene","score_opus":0.011037743810087867,"score_gpt":0.22004165934947628,"score_spread":0.2090039155393884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105795902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99788815,0.00036239024,0.00022831713,0.00058826106,0.0005448889,0.00023419276,0.000021382406,0.0000026417974,0.00012977557],"genre_scores_gemma":[0.9951032,0.00018839524,0.0039255405,0.0005087074,0.000105245665,0.0000043310283,0.000005277904,0.000023019797,0.00013628574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983929,0.00020869756,0.0007212731,0.00024737229,0.000115861956,0.0003139393],"domain_scores_gemma":[0.99871975,0.00001109879,0.00063724926,0.00038074772,0.00018265386,0.00006847721],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005006308,0.0002077116,0.00046318254,0.000070146045,0.000034714078,0.000013247162,0.00044295378,0.0005491054,0.000042339958],"category_scores_gemma":[0.00014399106,0.0001526542,0.00019861889,0.00018934638,0.00020226969,0.000007265658,0.00013227956,0.00033274243,0.0000018988436],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015484597,0.00018378506,0.0019518195,0.000024859974,0.000078246994,0.000005250066,0.000042137362,0.00001511437,0.99720377,0.000118100295,0.00014488178,0.00007719345],"study_design_scores_gemma":[0.0014032489,0.0008118553,0.014271777,0.00004219948,0.000022466158,0.0001090738,0.000048224265,0.0000062670874,0.9599998,0.00006230041,0.02305574,0.00016705695],"about_ca_topic_score_codex":0.00003939913,"about_ca_topic_score_gemma":0.0001238885,"teacher_disagreement_score":0.037203975,"about_ca_system_score_codex":0.000023913131,"about_ca_system_score_gemma":0.00019909065,"threshold_uncertainty_score":0.6225058},"labels":[],"label_agreement":null},{"id":"W2105938248","doi":"10.1002/bit.21161","title":"Effect of heat‐shock proteins for relieving physiological stress and enhancing the production of penicillin acylase in <i>Escherichia coli</i>","year":2006,"lang":"en","type":"article","venue":"Biotechnology and Bioengineering","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Periplasmic space; Escherichia coli; Chaperone (clinical); Heat shock protein; Mutant; Protein folding; Inclusion bodies; Cell biology; Biology; Recombinant DNA; Biochemistry; Chemistry; Gene","score_opus":0.003936657764258497,"score_gpt":0.20239034501059783,"score_spread":0.19845368724633933,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105938248","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963469,0.0017241642,0.0009125782,0.00037638025,0.00008564789,0.00052127475,0.000012862606,0.000018167158,0.0000020493815],"genre_scores_gemma":[0.9982119,0.0005068567,0.0011240806,0.000006518039,0.000070598086,0.000049226317,0.000013132388,0.000010185774,0.000007470615],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923944,0.000028855033,0.00024567102,0.00027178,0.00003354657,0.00018067923],"domain_scores_gemma":[0.99968225,0.000026543748,0.00006680973,0.000188523,0.000023523298,0.000012350111],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024945312,0.00013959501,0.00022885414,0.00006544005,0.00004029943,0.0000042990837,0.0001070913,0.0004540533,3.1604372e-7],"category_scores_gemma":[0.00011906394,0.00009752355,0.00003681157,0.00012392552,0.00024166092,0.000002698035,0.00011302406,0.00012688468,4.5206146e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012127123,0.000028297625,0.0005078353,0.00019255426,0.000015854908,3.310045e-7,0.0000050426515,0.00019158237,0.9978609,0.00017458177,0.000005472145,0.00089627615],"study_design_scores_gemma":[0.0003113499,0.0011791014,0.0023132828,0.000070169845,0.000018093466,0.000005933453,0.000016379976,0.00026961393,0.9954349,0.000022968585,0.00025647474,0.00010173427],"about_ca_topic_score_codex":0.000038389928,"about_ca_topic_score_gemma":0.00007202622,"teacher_disagreement_score":0.002426003,"about_ca_system_score_codex":0.0000050290187,"about_ca_system_score_gemma":0.0000111964655,"threshold_uncertainty_score":0.3976895},"labels":[],"label_agreement":null},{"id":"W2106285397","doi":"10.1110/ps.7201","title":"Modeling of the bacterial luciferase‐flavin mononucleotide complex combining flexible docking with structure‐activity data","year":2001,"lang":"en","type":"article","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"Medical Research Council; Medical Research Council Canada; McGill University","keywords":"Flavin mononucleotide; Luciferase; Flavin group; Chemistry; Docking (animal); Stereochemistry; Active site; Linker; Binding site; Combinatorial chemistry; Biochemistry; Enzyme; Computer science","score_opus":0.03807593293991823,"score_gpt":0.27373166611557853,"score_spread":0.2356557331756603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106285397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961109,0.000027207872,0.0029864463,0.00019686008,0.00012965107,0.0003380707,0.000042964224,0.000014225368,0.00015364996],"genre_scores_gemma":[0.99533266,0.000011644572,0.004465098,0.00003592333,0.00009649441,0.00000537861,0.000021020622,0.000012300353,0.00001948819],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99864554,0.000052455525,0.00017825881,0.0005517809,0.00025026832,0.0003216866],"domain_scores_gemma":[0.9985514,0.000004279099,0.00012517603,0.0011500613,0.0001149759,0.00005410524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004099355,0.00014335389,0.00014855003,0.000045338515,0.00030596237,0.000072845105,0.0014439123,0.00009790402,0.000016263457],"category_scores_gemma":[0.000111230074,0.00009736788,0.000024997013,0.00037149232,0.0005844317,0.000019745543,0.0011700102,0.00014634337,7.0031086e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013897537,0.000024644343,0.0006848218,0.0000063202447,0.000007543763,5.704783e-7,0.000013053798,0.0012919396,0.9955479,0.00007544,0.0000041312364,0.0022046433],"study_design_scores_gemma":[0.00037164162,0.0002187311,0.0021936127,0.000029864343,0.000008439832,0.000023396742,0.00002161649,0.030034574,0.9659421,0.00012734726,0.000863215,0.00016548572],"about_ca_topic_score_codex":0.00014234961,"about_ca_topic_score_gemma":0.0001778436,"teacher_disagreement_score":0.02960584,"about_ca_system_score_codex":0.000013626055,"about_ca_system_score_gemma":0.00022372296,"threshold_uncertainty_score":0.3970547},"labels":[],"label_agreement":null},{"id":"W2106400683","doi":"10.5539/jmbr.v3n1p37","title":"Identification and In-vivo Characterization of a Novel OhrR Transcriptional Regulator in Burkholderia xenovorans LB400","year":2013,"lang":"en","type":"article","venue":"Journal of Molecular Biology Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Los Alamos National Laboratory; Laboratory Directed Research and Development; U.S. Department of Energy","keywords":"Effector; Electrophoretic mobility shift assay; Burkholderia; Transcriptional regulation; Biochemistry; Regulator; Function (biology); Cysteine; Affinity chromatography; Chemistry; Biology; Transcription factor; Gene; Cell biology; Genetics; Enzyme","score_opus":0.02369813326083176,"score_gpt":0.31313105742960445,"score_spread":0.2894329241687727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106400683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962083,0.00041479708,0.0019629612,0.0010375227,0.00009399213,0.00024581945,0.000018710814,0.000001160326,0.000016716107],"genre_scores_gemma":[0.99879926,0.00051914743,0.00048963877,0.00003544172,0.000062752835,0.00001396599,0.000025195466,0.000011640948,0.000042969095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986656,0.00018966538,0.0005447097,0.00021931269,0.00014353913,0.00023720035],"domain_scores_gemma":[0.999186,0.000012947057,0.0001821623,0.00018152465,0.00038218466,0.00005521911],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008951533,0.00009818516,0.00021715126,0.00042075192,0.00002337382,0.000018924115,0.00022990718,0.00037583854,0.000027991084],"category_scores_gemma":[0.00011427189,0.000089251866,0.000054123655,0.00026876916,0.0002790211,0.000009804729,0.00007042345,0.00025164257,6.943325e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014086837,0.00015257472,0.0041412017,0.000022021393,0.000026302114,0.0000029016423,0.000032439275,0.000005078981,0.9942433,0.00039114838,0.00001710022,0.0008250549],"study_design_scores_gemma":[0.0010433192,0.0003809385,0.06453298,0.000032140633,0.0000048800066,0.000049059534,0.00003379028,0.00011434619,0.93272555,0.00040149625,0.00059841236,0.000083098865],"about_ca_topic_score_codex":0.000026729538,"about_ca_topic_score_gemma":0.00002021548,"teacher_disagreement_score":0.061517768,"about_ca_system_score_codex":0.000019131112,"about_ca_system_score_gemma":0.000112768874,"threshold_uncertainty_score":0.36395854},"labels":[],"label_agreement":null},{"id":"W2106445116","doi":"10.1083/jcb.201208045","title":"SecYEG activates GTPases to drive the completion of cotranslational protein targeting","year":2013,"lang":"en","type":"article","venue":"The Journal of Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences","keywords":"Signal recognition particle; Biology; GTPase; Cell biology; Ribosome; Translocon; Signal recognition particle receptor; Protein targeting; Transport protein; Membrane protein; Biochemistry; Membrane; RNA; Gene","score_opus":0.007466847726188537,"score_gpt":0.21759245332299829,"score_spread":0.21012560559680976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106445116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954749,0.00037374187,0.0011978479,0.002456123,0.00011603865,0.00023607715,0.000010087025,0.0000018381418,0.00013336854],"genre_scores_gemma":[0.99832404,0.000118753924,0.0010646676,0.00019404123,0.00022549414,0.000004894438,0.000013712996,0.000007073653,0.00004730586],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992569,0.00014675263,0.00030685376,0.00008130165,0.00006373241,0.00014447386],"domain_scores_gemma":[0.9992246,0.000046454024,0.0002971355,0.00014610011,0.000254039,0.000031675034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003247396,0.000090825764,0.00014681989,0.000035671892,0.00006586803,0.0000070070555,0.00033317288,0.00013840305,0.000068076326],"category_scores_gemma":[0.000066171204,0.000046596353,0.00006692095,0.00006684467,0.00018069465,0.0000025312354,0.00007895415,0.00012992173,0.0000066188645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010213464,0.00002777529,0.0001583148,0.0000046728096,0.00003189437,1.0659965e-7,0.000050806233,0.00006481749,0.9980261,0.00007707867,0.00039664976,0.0010596741],"study_design_scores_gemma":[0.0002095571,0.00080020167,0.0015339516,0.000007298158,0.000014210245,0.000012250116,0.000098914104,0.000014220528,0.9814236,0.00063452654,0.015191559,0.00005972254],"about_ca_topic_score_codex":0.000028155879,"about_ca_topic_score_gemma":0.000006249031,"teacher_disagreement_score":0.016602486,"about_ca_system_score_codex":0.000005121159,"about_ca_system_score_gemma":0.00004566141,"threshold_uncertainty_score":0.1900144},"labels":[],"label_agreement":null},{"id":"W2106667548","doi":"10.1128/aac.45.8.2238-2244.2001","title":"Overexpression and Characterization of the Chromosomal Aminoglycoside 2′- <i>N</i> -Acetyltransferase of <i>Providencia stuartii</i>","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Acetyltransferase; Enzyme; Chloramphenicol acetyltransferase; Providencia; Biochemistry; Enzyme kinetics; Affinity chromatography; Aminoglycoside; Molecular biology; Biology; Escherichia coli; Chemistry; Active site; Enterobacteriaceae; Antibiotics; Reporter gene; Gene","score_opus":0.00561032465671901,"score_gpt":0.20540121997980226,"score_spread":0.19979089532308325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106667548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988832,0.00003400412,0.00005850864,0.00070244627,0.00006611529,0.00017403266,0.000048237223,0.000003870355,0.000029611308],"genre_scores_gemma":[0.9948218,0.003650344,0.00007474458,0.0012683192,0.00006225195,0.0000020092966,0.00003121378,0.000012723368,0.00007661698],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99941397,0.000023069804,0.0001912974,0.00019614381,0.000056650388,0.00011886004],"domain_scores_gemma":[0.99964374,0.000002381,0.00010568855,0.00018558641,0.000036370842,0.00002625091],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004237767,0.000113792164,0.0001440304,0.000017024258,0.000051699848,0.000010195877,0.00010931775,0.000149319,0.000012754155],"category_scores_gemma":[0.0000034331342,0.00008318944,0.00004662648,0.000062959254,0.00016970193,0.0000047685435,0.00007135632,0.000043495158,1.5561456e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013847044,0.00006921132,0.021533642,0.000026620153,0.000022729777,3.1137634e-7,0.000048935053,2.588725e-7,0.97401965,0.000009202698,0.000254058,0.0038769378],"study_design_scores_gemma":[0.0006732867,0.0001623463,0.07995696,0.00004649729,0.000010588909,0.000017478025,0.0000075819307,0.000005982345,0.90447134,0.0000075422886,0.014553286,0.00008712071],"about_ca_topic_score_codex":0.000020865777,"about_ca_topic_score_gemma":0.000006887748,"teacher_disagreement_score":0.069548294,"about_ca_system_score_codex":0.0000018985437,"about_ca_system_score_gemma":0.000017730636,"threshold_uncertainty_score":0.3392367},"labels":[],"label_agreement":null},{"id":"W2106702513","doi":"10.1128/jb.01536-07","title":"Modulation of Hexa-Acyl Pyrophosphate Lipid A Population under<i>Escherichia coli</i>Phosphate (Pho) Regulon Activation","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Université de Montréal","funders":"","keywords":"Regulon; Biology; Lipid A; Escherichia coli; Mutant; Biochemistry; Virulence; Microbiology; Bacterial outer membrane; Gene; Bacteria; Genetics","score_opus":0.012112808669000295,"score_gpt":0.22656086795290825,"score_spread":0.21444805928390795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106702513","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966259,0.00024341556,0.0018232296,0.00041551917,0.0006928035,0.0001436412,0.000009000295,0.000008252531,0.00003822604],"genre_scores_gemma":[0.9959658,0.0010905116,0.0021171358,0.00019006337,0.00043430462,0.0000032935275,0.000091336406,0.000026450256,0.00008111121],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99849534,0.00012184167,0.00077448745,0.00023714043,0.00013644816,0.00023473731],"domain_scores_gemma":[0.9982659,0.000016747017,0.0010527008,0.0002804178,0.00030825852,0.00007598004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024312471,0.0001965059,0.00042784648,0.00013027182,0.00008023906,0.00000927383,0.00022612496,0.0004836408,0.000031325955],"category_scores_gemma":[0.0000877862,0.00017758808,0.00016639147,0.0001690198,0.00016119439,0.000018516454,0.00008309879,0.0001847367,0.0000023217722],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00077276706,0.000088350105,0.004896271,0.000015256134,0.000088185174,0.0000036940296,0.000031402516,0.0005246568,0.991396,0.00008703354,0.00014502936,0.0019513507],"study_design_scores_gemma":[0.00093734515,0.0014802336,0.33544895,0.000025660673,0.000025639354,0.0001418243,0.00001851683,0.00009211456,0.6569205,0.00021036286,0.0045300703,0.00016880332],"about_ca_topic_score_codex":0.00005720378,"about_ca_topic_score_gemma":0.000011636138,"teacher_disagreement_score":0.33447555,"about_ca_system_score_codex":0.000038698716,"about_ca_system_score_gemma":0.00011971335,"threshold_uncertainty_score":0.7241832},"labels":[],"label_agreement":null},{"id":"W2107398951","doi":"10.1111/j.1574-6968.1997.tb10250.x","title":"Pseudomonas aeruginosa rfc genes of serotypes O2 and O5 could complement O-polymerase-deficient semi-rough mutants of either serotype","year":2006,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Medical Research Council","keywords":"Mutant; Gene; Biology; Pseudomonas aeruginosa; Serotype; Polymerase; Plasmid; Genetics; Molecular biology; Microbiology; Bacteria","score_opus":0.0063481211071325806,"score_gpt":0.20831246485869076,"score_spread":0.20196434375155817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107398951","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957808,0.002054695,0.00023382368,0.0010504035,0.00023605062,0.00027075078,0.00029977254,0.000013980129,0.00005967508],"genre_scores_gemma":[0.9972587,0.00025300524,0.0012258054,0.0006680756,0.00015197028,0.000010842839,0.00033421148,0.00002572415,0.000071632116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998627,0.00007568073,0.00043699876,0.00044612342,0.000052885604,0.00036129626],"domain_scores_gemma":[0.9992525,0.000014043159,0.00025752478,0.00037109666,0.00007008232,0.000034750596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012578144,0.00025081518,0.00035848003,0.00009956787,0.00005520397,0.0000076113565,0.00024005622,0.00035430078,0.000025829022],"category_scores_gemma":[0.000008168262,0.00022517168,0.00008807387,0.000116855306,0.0005563637,0.0000023386278,0.00021750262,0.00010152826,0.0000047489257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010278135,0.0000937939,0.0071512866,0.000031260704,0.00009620957,0.0000040280515,0.000017963297,0.00005464233,0.9898658,0.00008954661,0.0014640815,0.0010286336],"study_design_scores_gemma":[0.00072231656,0.0003430605,0.00324777,0.000017949289,0.000031686734,0.00007335023,0.000018462873,0.000004695181,0.95317537,0.000018654238,0.042122487,0.00022420898],"about_ca_topic_score_codex":0.00033771442,"about_ca_topic_score_gemma":0.00012373223,"teacher_disagreement_score":0.040658403,"about_ca_system_score_codex":0.000013060403,"about_ca_system_score_gemma":0.000045586567,"threshold_uncertainty_score":0.91822344},"labels":[],"label_agreement":null},{"id":"W2107523606","doi":"10.1186/1754-1611-5-12","title":"BglBrick vectors and datasheets: A synthetic biology platform for gene expression","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Engineering","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":533,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Lawrence Berkeley National Laboratory; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Energy; Office of Science; National Science Foundation","keywords":"Plasmid; Computational biology; Biology; Expression vector; Gene; Origin of replication; Genetics; Computer science; Recombinant DNA","score_opus":0.027386457713913938,"score_gpt":0.22547188110538915,"score_spread":0.19808542339147522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107523606","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98088044,0.001145682,0.017518723,0.000026212572,0.0002859831,0.00008942757,0.000028318515,0.000008280942,0.000016924034],"genre_scores_gemma":[0.9731222,0.00075805816,0.025818968,0.000031607764,0.0002284315,0.000005114014,0.000021223525,0.000010674816,0.0000037375562],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993189,0.000011245802,0.0002720917,0.00017175823,0.000029599265,0.00019638414],"domain_scores_gemma":[0.9995935,0.000021016433,0.00012828656,0.0001288282,0.000050459814,0.0000778999],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019298031,0.00012759851,0.00020443359,0.0000624345,0.000027695993,0.0000076266338,0.00018261594,0.000314053,0.000009934451],"category_scores_gemma":[0.00019694176,0.00008605152,0.000078421486,0.00003891143,0.000062463,0.000003836035,0.0001156784,0.00010160177,4.6151084e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013524643,0.000028625389,0.00037457584,0.000008493534,0.000033110686,0.0000024951062,0.000011209179,0.000010138235,0.9965597,0.00013290225,0.000040039085,0.002663468],"study_design_scores_gemma":[0.00046949444,0.0018023811,0.0016950148,0.000019782401,0.000015889997,0.00016807823,0.000015441938,0.00007117724,0.979465,0.00020191664,0.01592128,0.00015451954],"about_ca_topic_score_codex":0.000001297982,"about_ca_topic_score_gemma":2.6574756e-7,"teacher_disagreement_score":0.017094672,"about_ca_system_score_codex":0.000006354169,"about_ca_system_score_gemma":0.000013669684,"threshold_uncertainty_score":0.3509079},"labels":[],"label_agreement":null},{"id":"W2107901901","doi":"10.1128/jb.187.18.6309-6316.2005","title":"Adenylate Cyclase Mutations Rescue the <i>degP</i> Temperature-Sensitive Phenotype and Induce the Sigma E and Cpx Extracytoplasmic Stress Regulons in <i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Department of Education of Guangdong Province","keywords":"Regulon; Sigma factor; Biology; Mutant; SOS response; Bacterial outer membrane; Escherichia coli; Periplasmic space; lac operon; Molecular biology; Mutation; Gene; Genetics; RNA polymerase","score_opus":0.006037584054953435,"score_gpt":0.22085865092594106,"score_spread":0.21482106687098762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107901901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888678,0.0013441353,0.000023967401,0.009326378,0.00020797664,0.00015746035,0.000032827687,0.0000032969313,0.0000361272],"genre_scores_gemma":[0.99634814,0.0017877503,0.00037642554,0.00096839364,0.0004191283,0.0000054438297,0.000014145813,0.000015397267,0.00006519481],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998854,0.00024002838,0.00038952843,0.00022021054,0.0000640716,0.00023218652],"domain_scores_gemma":[0.99930483,0.00007449431,0.00022065047,0.00022476827,0.0001111693,0.00006409088],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003542333,0.00016940723,0.0002434826,0.000058709444,0.00013643834,0.00004832953,0.00020625211,0.000344649,0.0000047271365],"category_scores_gemma":[0.00011712557,0.00010220411,0.00005237635,0.00010756633,0.00043455107,0.000010492347,0.00013459,0.0004811524,7.9518236e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002422259,0.000041151558,0.0006662501,0.0000049929827,0.000053968768,0.0000135881155,0.00020537317,0.000094307936,0.99624676,0.00007859101,0.00015423581,0.0021985343],"study_design_scores_gemma":[0.0023387284,0.001510787,0.15235516,0.00007374556,0.00010111927,0.0015089036,0.0011149391,0.00014998317,0.78399324,0.000239789,0.056173865,0.0004397466],"about_ca_topic_score_codex":0.000014767778,"about_ca_topic_score_gemma":0.00052332896,"teacher_disagreement_score":0.21225356,"about_ca_system_score_codex":0.000013989765,"about_ca_system_score_gemma":0.00009958946,"threshold_uncertainty_score":0.41677627},"labels":[],"label_agreement":null},{"id":"W2108017448","doi":"10.1073/pnas.1304127111","title":"Accessory factors promote AlfA-dependent plasmid segregation by regulating filament nucleation, disassembly, and bundling","year":2014,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences","keywords":"Plasmid; Operon; Bacillus subtilis; Biology; DNA; Protein filament; Gene; Bacteria; Genetics; Computational biology; Cell biology; Escherichia coli","score_opus":0.018181028646780922,"score_gpt":0.26495085726789874,"score_spread":0.24676982862111782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108017448","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983423,0.000061661325,0.000007566989,0.001049992,0.0000187752,0.00011203909,0.000011677905,0.0000048640177,0.0003911189],"genre_scores_gemma":[0.9989241,0.00005457455,0.0008174496,0.00007563499,0.000047170146,0.0000033616168,0.0000017748167,0.0000042158167,0.00007173817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910027,0.000006518719,0.00021498992,0.00023454808,0.00033708254,0.00010656832],"domain_scores_gemma":[0.99951744,0.000015945783,0.00031613652,0.000010103368,0.000118166594,0.000022215856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005263535,0.000081982216,0.000090561545,0.000045404777,0.00015194819,0.000029775707,0.00031700317,0.00013999378,0.000002531496],"category_scores_gemma":[0.00022400463,0.000057273373,0.000028632201,0.000129554,0.0003335859,0.000019001167,0.00014590105,0.000062215186,1.1114764e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000069613184,0.000015207154,0.00334301,0.00001951104,0.000008172212,1.8004866e-10,0.00003602857,0.000022882363,0.99330837,0.0022305108,0.00017289701,0.0008364489],"study_design_scores_gemma":[0.0001195743,0.00009148245,0.013001821,0.000025592088,0.000006423557,0.0000016779319,0.00006102922,0.0005368798,0.9806774,0.0047018225,0.00070669054,0.000069567024],"about_ca_topic_score_codex":0.0000036312802,"about_ca_topic_score_gemma":1.6909037e-7,"teacher_disagreement_score":0.012630931,"about_ca_system_score_codex":0.000009487277,"about_ca_system_score_gemma":0.0000100098405,"threshold_uncertainty_score":0.23355404},"labels":[],"label_agreement":null},{"id":"W2108073657","doi":"10.1016/j.bbamem.2009.10.002","title":"Influence of K+-dependent membrane lipid composition on the expression of the kdpFABC operon in Escherichia coli","year":2009,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Deutsche Forschungsgemeinschaft; Fonds der Chemischen Industrie; National Institutes of Health; University of Guelph","keywords":"Operon; Phospholipid; Phosphatidylethanolamine; Biochemistry; Escherichia coli; Liposome; Biology; Phosphatidylinositol; Cardiolipin; Chemistry; Kinase; Gene; Membrane; Phosphatidylcholine","score_opus":0.0077615644128701455,"score_gpt":0.22650121371424026,"score_spread":0.2187396493013701,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108073657","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99563736,0.00006218066,0.0000020083714,0.0034783143,0.000120836055,0.0004796195,0.00007580024,0.000013937357,0.00012997557],"genre_scores_gemma":[0.9986782,0.00040038774,0.00007697482,0.0006156645,0.00010292118,0.000016782476,0.000052703628,0.000020287496,0.000036054393],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983109,0.00022814449,0.00047183834,0.00044479943,0.00026119206,0.0002831164],"domain_scores_gemma":[0.99863195,0.000039937502,0.0003565932,0.0008359487,0.0000892725,0.00004627927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022782729,0.0002885655,0.00032605618,0.00009648688,0.00008776862,0.000024043571,0.0008155884,0.0003532474,0.000006501933],"category_scores_gemma":[0.00004657962,0.00017694398,0.0001614938,0.00040548356,0.00037583866,0.000009526567,0.00022946375,0.00020960416,0.0000029535463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004014183,0.00038845485,0.0000068649124,0.000036849517,0.000023430424,4.4940788e-7,0.00007887033,0.000144623,0.99854594,0.00019360319,0.00005066197,0.00012885842],"study_design_scores_gemma":[0.00053503783,0.0006922124,0.014029899,0.00013513217,0.000021537446,0.0000027332626,0.000031548556,0.00002124669,0.9840672,0.000058999085,0.00019362949,0.00021081767],"about_ca_topic_score_codex":0.000035428937,"about_ca_topic_score_gemma":0.0000089860505,"teacher_disagreement_score":0.01447871,"about_ca_system_score_codex":0.000014972895,"about_ca_system_score_gemma":0.00007138525,"threshold_uncertainty_score":0.72155666},"labels":[],"label_agreement":null},{"id":"W2108141290","doi":"10.1093/nar/gkl734","title":"Non-canonical CRP sites control competence regulons in Escherichia coli and many other γ-proteobacteria","year":2006,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institutes of Health","keywords":"Biology; Regulon; Escherichia coli; Proteobacteria; Competence (human resources); Genetics; Enterobacteriaceae; Microbiology; Bacteria; Gene; 16S ribosomal RNA","score_opus":0.016243836595626403,"score_gpt":0.2838767672733712,"score_spread":0.2676329306777448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108141290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962338,0.0002964127,0.00013411113,0.0010653568,0.000054391265,0.00044300477,0.000034061108,0.000014460325,0.0017243804],"genre_scores_gemma":[0.99745536,0.000120208875,0.0012312038,0.00015547471,0.00025142348,0.000057822508,0.00002634396,0.000033889857,0.0006682482],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99823827,0.00015270621,0.00026581093,0.00053068023,0.00020992628,0.0006026125],"domain_scores_gemma":[0.9992607,0.000026227888,0.00004586907,0.00045208857,0.00012112429,0.00009396363],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057079236,0.00017365579,0.00023266788,0.00011699735,0.0001220337,0.000082815444,0.00035700508,0.0004736608,0.00009760255],"category_scores_gemma":[0.00006791732,0.00015992882,0.0000465303,0.00024604297,0.0006066865,0.0000046440136,0.000312421,0.00036715917,0.00003318463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019451782,0.00009402583,0.021656327,0.000015027995,0.000014080131,0.000009085265,0.000009971697,0.0000022901063,0.9761059,0.00050643814,0.00083657197,0.0005557339],"study_design_scores_gemma":[0.0023154893,0.0009758706,0.37208268,0.00003415168,0.0000073676847,0.000017951774,0.00006242931,0.00052409706,0.5538697,0.00060845877,0.06911193,0.0003898309],"about_ca_topic_score_codex":0.00034680366,"about_ca_topic_score_gemma":0.0005145037,"teacher_disagreement_score":0.4222362,"about_ca_system_score_codex":0.000027567092,"about_ca_system_score_gemma":0.0001123092,"threshold_uncertainty_score":0.6521708},"labels":[],"label_agreement":null},{"id":"W2108308448","doi":"10.1046/j.1365-2958.2000.01999.x","title":"Transcriptional induction of the conserved alternative sigma factor RpoS in <i>Escherichia coli</i> is dependent on BarA, a probable two‐component regulator","year":2000,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Cancer Institute; National Institutes of Health","keywords":"rpoS; Sigma factor; Biology; Escherichia coli; Mutant; Operon; Gene; Genetics; Plasmid; Gene expression; lac operon; Transcriptional regulation; Promoter; Molecular biology; RNA polymerase","score_opus":0.00866248061364225,"score_gpt":0.20930007127971054,"score_spread":0.2006375906660683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108308448","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976351,0.0003121457,0.00008158476,0.0008272749,0.00026610887,0.0005250397,0.00017640105,0.000008544571,0.000167781],"genre_scores_gemma":[0.99785614,0.00007811243,0.00025544557,0.0012958788,0.00005268072,0.00003738134,0.00010167902,0.00002260287,0.00030005485],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985415,0.00022167353,0.0003551247,0.00050085364,0.00007304607,0.00030784978],"domain_scores_gemma":[0.99933666,0.0000062450167,0.00012223804,0.00043282862,0.0000615248,0.00004049177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000101058184,0.00023095617,0.00025315603,0.0000579498,0.000051409846,0.00001005438,0.00036011808,0.00039209612,0.0001695666],"category_scores_gemma":[0.000011464069,0.00018651492,0.00014760623,0.00013519794,0.00024556564,0.0000025918828,0.00007630295,0.00021544145,0.0000104048895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032863332,0.00018872117,0.00030611918,0.000009574653,0.00007960028,0.000003882397,0.000047900336,0.0002689791,0.99776876,0.00019153795,0.000107324384,0.0006989668],"study_design_scores_gemma":[0.0013705035,0.00041585695,0.0023866377,0.000022325969,0.000014888507,0.000033173354,0.00000939663,0.00001874234,0.9761113,0.00013824385,0.019282019,0.0001969423],"about_ca_topic_score_codex":0.0000899011,"about_ca_topic_score_gemma":0.00010721016,"teacher_disagreement_score":0.021657491,"about_ca_system_score_codex":0.00003677509,"about_ca_system_score_gemma":0.00008521365,"threshold_uncertainty_score":0.7605858},"labels":[],"label_agreement":null},{"id":"W2108518744","doi":"10.1128/jb.00103-10","title":"Evidence that Regulatory Protein MarA of <i>Escherichia coli</i> Represses <i>rob</i> by Steric Hindrance","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Institute of Genetics; U.S. Public Health Service; National Institutes of Health","keywords":"Biology; Psychological repression; Escherichia coli; Transcription (linguistics); RNA polymerase; Promoter; Binding site; DNA; Ternary complex; Mutant; Repressor; Molecular biology; Mutagenesis; Gene; Transcription factor; Genetics; Biochemistry; Gene expression; Enzyme","score_opus":0.011476807705935354,"score_gpt":0.22866523553975393,"score_spread":0.2171884278338186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108518744","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955625,0.0024226713,0.0002762768,0.000594471,0.00086085347,0.00018117703,0.000024663284,0.000006469805,0.000070947375],"genre_scores_gemma":[0.9953944,0.0010437821,0.002677403,0.00028040097,0.00034123237,0.000008025421,0.000010426094,0.00002545735,0.00021884037],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851257,0.00014109675,0.0006247836,0.00030140727,0.0001403232,0.00027979855],"domain_scores_gemma":[0.99788576,0.000028669676,0.0011892839,0.00054288167,0.0002516472,0.00010177007],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046398732,0.00021282518,0.00046489204,0.00006768475,0.00004189207,0.000019315563,0.0005939976,0.0005801171,0.000054206503],"category_scores_gemma":[0.0002600013,0.00017913009,0.00016084216,0.000099941746,0.00040974823,0.000015445194,0.00018947267,0.00042435908,0.000002719552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000492909,0.00007946303,0.00227447,0.00003285058,0.0000657891,0.0000066310645,0.000013904179,0.0000016097755,0.992628,0.000022978751,0.0021467458,0.0022346748],"study_design_scores_gemma":[0.00044859905,0.0011905995,0.012149178,0.000059457252,0.000026407746,0.00017362954,0.00001177618,0.0000015049186,0.9200803,0.00006292284,0.06561969,0.00017592167],"about_ca_topic_score_codex":0.000010725916,"about_ca_topic_score_gemma":0.000014086826,"teacher_disagreement_score":0.07254767,"about_ca_system_score_codex":0.000008956044,"about_ca_system_score_gemma":0.00017369264,"threshold_uncertainty_score":0.7304713},"labels":[],"label_agreement":null},{"id":"W2108611713","doi":"10.1371/journal.pone.0019421","title":"Bacterial Transmembrane Proteins that Lack N-Terminal Signal Sequences","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Streptomyces coelicolor; Membrane protein; Biology; Transmembrane protein; Translocon; Cell biology; Vesicle-associated membrane protein 8; Signal peptide; Biochemistry; Bacterial outer membrane; Transmembrane domain; Peripheral membrane protein; Integral membrane protein; Bacteria; Peptide sequence; Membrane; Genetics; Streptomyces; Gene; Receptor","score_opus":0.06385505304789497,"score_gpt":0.22582597846582644,"score_spread":0.16197092541793146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108611713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99788094,0.00016658654,0.00009133998,0.00012316377,0.00008178674,0.00031908797,0.000045134304,0.00003312948,0.0012588323],"genre_scores_gemma":[0.9933436,0.00036078293,0.0052717417,0.00010443794,0.00042610522,0.00004603715,0.00008882283,0.000024316303,0.00033414792],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897295,0.000044213033,0.00017692574,0.0003621817,0.00014203764,0.00030171731],"domain_scores_gemma":[0.9994959,0.000002660613,0.00007332912,0.0002936109,0.00005243521,0.00008204807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009109457,0.00017833294,0.00020056697,0.00003866677,0.000060217906,0.000023201868,0.00029826257,0.00033693973,0.0006233767],"category_scores_gemma":[0.000010189896,0.00016132729,0.00006962155,0.00005504831,0.00014896001,0.0000041989124,0.00007749349,0.00011236321,0.000038318347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026565525,0.0005203659,0.00046356677,0.000041349027,0.0001241663,0.000013494809,0.0000498813,5.724071e-8,0.9973392,0.0000402009,0.000044340817,0.0010977057],"study_design_scores_gemma":[0.00042914128,0.0010400596,0.0008055925,0.00003265283,0.00006208518,0.000018280069,0.000014920647,0.000004120112,0.9956325,0.00012627646,0.0016040222,0.00023033682],"about_ca_topic_score_codex":0.000027678852,"about_ca_topic_score_gemma":0.000046868867,"teacher_disagreement_score":0.0051804013,"about_ca_system_score_codex":0.000006193194,"about_ca_system_score_gemma":0.000059788505,"threshold_uncertainty_score":0.68255377},"labels":[],"label_agreement":null},{"id":"W2108679169","doi":"10.1128/jb.183.3.807-812.2001","title":"MexR Repressor of the <i>mexAB-oprM</i> Multidrug Efflux Operon of <i>Pseudomonas aeruginosa</i> : Identification of MexR Binding Sites in the <i>mexA-mexR</i> Intergenic Region","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Cystic Fibrosis Foundation","keywords":"Biology; Operon; Repressor; Mutant; Pseudomonas aeruginosa; Molecular biology; Efflux; Biochemistry; Microbiology; Transcription factor; Genetics; Gene; Bacteria","score_opus":0.013326380694496614,"score_gpt":0.24338080635148357,"score_spread":0.23005442565698694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108679169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972818,0.00068633794,0.0001328225,0.00095309655,0.0005999595,0.00025799513,0.000023993658,0.0000027333215,0.00006127386],"genre_scores_gemma":[0.99692726,0.0024426752,0.0001957827,0.0001276164,0.00018738567,0.0000062793642,0.000022626575,0.000019515715,0.00007083183],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99732596,0.00046842117,0.001460036,0.00028767603,0.00018952346,0.00026836994],"domain_scores_gemma":[0.9969777,0.00008568598,0.0018773051,0.00072842365,0.0002916346,0.00003927793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010152922,0.000217304,0.0005600236,0.00016909062,0.000049333474,0.0000119472725,0.0010401236,0.0004265907,0.000011690802],"category_scores_gemma":[0.0002808958,0.00013751183,0.00032522486,0.00030988164,0.00045041667,0.000015864942,0.00023243566,0.00031855976,0.0000010995138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004087819,0.00018204766,0.023540195,0.000041093263,0.000096621916,0.00000503889,0.00027122255,0.000052449104,0.9740825,0.00003606559,0.0003339533,0.0009500179],"study_design_scores_gemma":[0.0009453377,0.00072055287,0.038173437,0.00008917745,0.00007855256,0.0004449045,0.00025912412,0.000019188108,0.95489633,0.00007718159,0.0041635153,0.00013267684],"about_ca_topic_score_codex":0.000044496363,"about_ca_topic_score_gemma":0.00007978054,"teacher_disagreement_score":0.01918616,"about_ca_system_score_codex":0.000022722097,"about_ca_system_score_gemma":0.00009087446,"threshold_uncertainty_score":0.5607569},"labels":[],"label_agreement":null},{"id":"W2108709192","doi":"10.1093/jac/dki443","title":"Molecular investigation of genetic elements contributing to metronidazole resistance in Bacteroides strains","year":2005,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute for Materials Science; Hungarian Scientific Research Fund; National Research Foundation; Magyar Tudományos Akadémia; Canadian Food Inspection Agency","keywords":"Plasmid; Gene; Biology; Genetics; Chromosome","score_opus":0.005635374126530377,"score_gpt":0.2322530993291036,"score_spread":0.22661772520257323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108709192","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963336,0.00032079994,0.0011732124,0.0019269469,0.00007538822,0.0001294042,0.000013677234,0.0000022030601,0.000024765946],"genre_scores_gemma":[0.97162634,0.0002837925,0.026923167,0.00096073037,0.00016379196,7.9788185e-7,0.0000070967194,0.000017325843,0.000016977563],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880785,0.000043870616,0.00062554673,0.00015579822,0.000104402345,0.0002625367],"domain_scores_gemma":[0.99922246,0.000004280976,0.00039422713,0.00015851732,0.0001595223,0.000061006398],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033214627,0.00012757411,0.00024573226,0.00014178433,0.000022036878,0.000015964179,0.00023617543,0.0001570074,0.00000974316],"category_scores_gemma":[0.00004056752,0.00012411828,0.00009188147,0.00015964375,0.000057566544,0.000005682007,0.000046115158,0.00010813048,8.8978607e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002329476,0.000050761853,0.0063775857,0.0000109499815,0.00004687019,0.0000027966685,0.00005800974,0.00015749013,0.9902745,0.000010360186,0.0002828527,0.0024949138],"study_design_scores_gemma":[0.0012826411,0.00026065917,0.025061898,0.000055033153,0.000008822283,0.0000115942685,0.00001436718,0.000005187429,0.96616167,0.000030550123,0.0069917575,0.00011584181],"about_ca_topic_score_codex":0.0000040699297,"about_ca_topic_score_gemma":0.000075430115,"teacher_disagreement_score":0.025749953,"about_ca_system_score_codex":0.000034207264,"about_ca_system_score_gemma":0.00008926833,"threshold_uncertainty_score":0.50613964},"labels":[],"label_agreement":null},{"id":"W2109250055","doi":"10.1261/rna.036343.112","title":"In vitro characterization of 6S RNA release-defective mutants uncovers features of pRNA-dependent release from RNA polymerase in <i>E. coli</i>","year":2014,"lang":"en","type":"article","venue":"RNA","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"SFU Community Trust Endowment Fund; Natural Sciences and Engineering Research Council of Canada; Michael Smith Health Research BC","keywords":"Biology; RNA; RNA polymerase; Transcription (linguistics); Mutant; RNA-dependent RNA polymerase; Molecular biology; Systematic evolution of ligands by exponential enrichment; Polymerase; Cell biology; Genetics; DNA; Gene","score_opus":0.003585182063370915,"score_gpt":0.20353722231033447,"score_spread":0.19995204024696356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109250055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985968,0.00019702582,0.00012811982,0.00015249739,0.0002279279,0.00022051354,0.00024626518,0.000006724241,0.00022410975],"genre_scores_gemma":[0.9987669,0.000425154,0.00012853574,0.00021012017,0.00011929764,0.000011054317,0.00023864306,0.000022706858,0.00007761113],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998816,0.00011787371,0.00036315364,0.00035424897,0.00013127622,0.00021744234],"domain_scores_gemma":[0.99927753,0.000017962278,0.000256785,0.00033892118,0.00006044021,0.00004836095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012527787,0.00017156427,0.0002974089,0.00011603934,0.000017802964,0.00000790953,0.00019107817,0.0003622258,0.000015804342],"category_scores_gemma":[0.00010394577,0.00017089237,0.00007241945,0.00016858023,0.00008587429,0.0000068058403,0.00009924609,0.0001465445,0.000002376465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008732244,0.00016292548,0.000413607,0.000020384896,0.000028612452,0.0000073311676,0.000045182118,0.000015686099,0.99127525,0.000038991013,0.000024406127,0.0070943916],"study_design_scores_gemma":[0.0011165291,0.00031395396,0.013382454,0.000041863655,0.000016823598,0.000002778059,0.000023373172,0.000035525907,0.98429674,0.0001341124,0.00047159026,0.00016428012],"about_ca_topic_score_codex":0.00061947503,"about_ca_topic_score_gemma":0.00019079966,"teacher_disagreement_score":0.0129688475,"about_ca_system_score_codex":0.000028042978,"about_ca_system_score_gemma":0.000070728536,"threshold_uncertainty_score":0.69687885},"labels":[],"label_agreement":null},{"id":"W2109425758","doi":"10.1111/j.1365-2958.2006.05246.x","title":"Differential modulation of <i>E. coli</i> mRNA abundance by inhibitory proteins that alter the composition of the degradosome","year":2006,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institutes of Health; Petroleum Technology Research Centre","keywords":"Biology; Degradosome; Abundance (ecology); Composition (language); Modulation (music); Messenger RNA; Inhibitory postsynaptic potential; Cell biology; Biochemistry; Ecology; Gene; Physics; Neuroscience; RNA editing","score_opus":0.0031122863426057746,"score_gpt":0.17697627400739316,"score_spread":0.1738639876647874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109425758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949703,0.0005816016,0.0030812884,0.00050772895,0.00024626392,0.00041384064,0.0001379158,0.0000062348754,0.00005477799],"genre_scores_gemma":[0.9991249,0.000031290638,0.00016882303,0.00017880237,0.0000737206,0.000019815046,0.00032287775,0.000016362155,0.00006341587],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990652,0.00015429308,0.00027386105,0.000256636,0.000056201923,0.00019378701],"domain_scores_gemma":[0.9992374,0.0000059099843,0.00025033296,0.00042219044,0.00007074226,0.0000134245665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006286781,0.00015333769,0.00017867034,0.00002594474,0.00006428334,0.0000072714915,0.00032565187,0.00031199097,0.000007963875],"category_scores_gemma":[0.0000050901626,0.0000997956,0.00013815194,0.00008357721,0.00046925692,0.0000017971331,0.0001750335,0.000107959,0.0000010307452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055125918,0.00008960872,0.0004245769,0.000013870762,0.00003276314,2.9507845e-7,0.0000058553583,0.00004348181,0.9982361,0.00020332368,0.00070851925,0.00018646606],"study_design_scores_gemma":[0.00040565035,0.0001560435,0.0026846475,0.000013484545,0.000022420518,0.000016891327,0.0000034649333,0.000016491898,0.99060106,0.00012836236,0.00584167,0.00010979657],"about_ca_topic_score_codex":0.000059899256,"about_ca_topic_score_gemma":0.000021064508,"teacher_disagreement_score":0.007635037,"about_ca_system_score_codex":0.000010411317,"about_ca_system_score_gemma":0.000027460519,"threshold_uncertainty_score":0.40695465},"labels":[],"label_agreement":null},{"id":"W2110003576","doi":"10.1042/bj20041082","title":"Probing the active site of YjeE: a vital <i>Escherichia coli</i> protein of unknown function","year":2004,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Escherichia coli; ATP hydrolysis; Biochemistry; Biology; ATPase; Recombinant DNA; Walker motifs; Tryptophan; Amino acid; Gene; Enzyme","score_opus":0.005378328476987584,"score_gpt":0.20346074249559162,"score_spread":0.19808241401860405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110003576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99775326,0.00042463266,0.000959385,0.00042795626,0.00012138783,0.00019782128,0.000016728687,0.000004678417,0.00009413852],"genre_scores_gemma":[0.99850094,0.00006783599,0.0010200253,0.00007448084,0.0002671547,0.00000805439,0.00001685498,0.000013088532,0.000031569525],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991787,0.00003382092,0.000297283,0.0001697755,0.00013233635,0.00018804875],"domain_scores_gemma":[0.9993274,0.0000043111736,0.00026002366,0.00019493462,0.00015626606,0.000057058416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014184571,0.00012552334,0.00015614938,0.000029286184,0.000058745863,0.000013125882,0.00019631952,0.00027058148,0.000008958599],"category_scores_gemma":[0.00006053192,0.00008690296,0.00012869408,0.00012896198,0.00022802701,0.0000032908629,0.00011342275,0.0002316924,0.0000015010967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037983994,0.000108606895,0.000025879832,0.000015098337,0.00006778948,9.42291e-7,0.000031501448,0.0000099067465,0.9980876,0.00014029519,0.000117386015,0.001015185],"study_design_scores_gemma":[0.00069998234,0.0006719364,0.0003333845,0.00004303355,0.000029926416,0.000042430478,0.00004487493,0.0000015692448,0.994132,0.00041983466,0.003478675,0.00010235459],"about_ca_topic_score_codex":0.000007527563,"about_ca_topic_score_gemma":0.0000028890665,"teacher_disagreement_score":0.0039555705,"about_ca_system_score_codex":0.000017723729,"about_ca_system_score_gemma":0.00014125464,"threshold_uncertainty_score":0.35437998},"labels":[],"label_agreement":null},{"id":"W2110470249","doi":"10.1093/nar/gkv001","title":"A defense-offense multi-layered regulatory switch in a pathogenic bacterium","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Azrieli Foundation; Agence Nationale de la Recherche","keywords":"Biology; Offensive; Gene; Quorum sensing; Computational biology; Regulation of gene expression; Gene expression; Cell biology; Transcription factor; Regulator; Genetics; Synthetic biology; Transcriptional regulation; Virulence","score_opus":0.0648744058420101,"score_gpt":0.32520096084368705,"score_spread":0.26032655500167695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110470249","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973617,0.0007430494,0.0000676657,0.00056844566,0.0002220477,0.00037696687,0.00002317979,0.00002973773,0.00060718466],"genre_scores_gemma":[0.99621755,0.00021019646,0.0021294584,0.00011361379,0.0002574135,0.00005621952,0.00006141763,0.000055618646,0.0008985224],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974371,0.00034691536,0.00032796548,0.0006746769,0.00040119502,0.0008121358],"domain_scores_gemma":[0.99841404,0.000015899854,0.000053358584,0.0008910214,0.00034980822,0.0002759002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001424885,0.00021419984,0.00024395194,0.000257658,0.00008489868,0.000058226477,0.00056439935,0.0006880037,0.00003078272],"category_scores_gemma":[0.0004033278,0.00020451561,0.00008824399,0.0004418236,0.00032362895,0.0000053942567,0.0006615285,0.000486452,0.00014790682],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036199501,0.0001690903,0.006284712,0.000013226798,0.00002229959,0.000040414434,0.00009898467,0.0000049033797,0.9865928,0.00007693058,0.0017479827,0.0045866156],"study_design_scores_gemma":[0.0074670315,0.0028106503,0.08219572,0.00006597657,0.000015340245,0.00019614841,0.0010977754,0.0008429016,0.7050152,0.000778294,0.19845796,0.0010570129],"about_ca_topic_score_codex":0.00007258047,"about_ca_topic_score_gemma":0.00020920222,"teacher_disagreement_score":0.28157765,"about_ca_system_score_codex":0.000086500404,"about_ca_system_score_gemma":0.00036081948,"threshold_uncertainty_score":0.83399045},"labels":[],"label_agreement":null},{"id":"W2111154300","doi":"10.1139/w03-096","title":"Controlled induction of the RpoS regulon in<i>Escherichia coli</i>, using an RpoS-expressing plasmid","year":2003,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"rpoS; Regulon; Sigma factor; Escherichia coli; Plasmid; Biology; lac operon; Gene; Operon; Genetics; Gene expression; Molecular biology; Promoter; RNA polymerase","score_opus":0.01120440838644144,"score_gpt":0.20861864162572022,"score_spread":0.19741423323927879,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111154300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99763453,0.0011058822,0.000041399075,0.00023842818,0.0007398751,0.00014912938,0.00001461762,9.110263e-7,0.0000752411],"genre_scores_gemma":[0.99869233,0.000043783213,0.00083163416,0.00027540216,0.0001059579,0.0000011049714,0.0000061053684,0.000013450311,0.000030220297],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99882054,0.00028559993,0.0004383468,0.00015899842,0.000025523865,0.00027099435],"domain_scores_gemma":[0.99908316,0.000007982505,0.00039318623,0.00022647192,0.00017501044,0.00011417218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033576167,0.00012748773,0.0003039366,0.00013964092,0.000073115836,0.000012961442,0.00027777653,0.0004284766,0.000017772536],"category_scores_gemma":[0.00013804508,0.00009728314,0.00010769305,0.00013077927,0.0002720866,0.0000050864173,0.000018423028,0.0002218534,3.0887327e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000100416386,0.0000235896,0.0022090564,0.000003915366,0.000038374033,0.0000037355228,0.000044643428,0.000146038,0.99715286,0.0000859495,0.0001060752,0.000085352636],"study_design_scores_gemma":[0.0019702245,0.00036467018,0.0008956912,0.00003417352,0.000029904004,0.0003891535,0.00016017939,0.0000069216653,0.9729842,0.000113110036,0.022927843,0.00012392258],"about_ca_topic_score_codex":0.0006199529,"about_ca_topic_score_gemma":0.010645494,"teacher_disagreement_score":0.024168648,"about_ca_system_score_codex":0.000047471665,"about_ca_system_score_gemma":0.0010951031,"threshold_uncertainty_score":0.59404355},"labels":[],"label_agreement":null},{"id":"W2111228244","doi":"10.1111/j.1365-2958.2012.08179.x","title":"Double locking of an <i>Escherichia coli</i> promoter by two repressors prevents premature colicin expression and cell lysis","year":2012,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Circulatory and Respiratory Health; Biotechnology and Biological Sciences Research Council","keywords":"Repressor lexA; Colicin; Repressor; Biology; SOS response; Operon; DNA damage; Transcription (linguistics); Transcription factor; Escherichia coli; Promoter; DNA repair; Gene; DNA; Genetics; Cell biology; Molecular biology; Gene expression","score_opus":0.004289222280487486,"score_gpt":0.21997547121110814,"score_spread":0.21568624893062066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111228244","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960661,0.0028180212,0.00031949088,0.000050552324,0.00013735618,0.00038907063,0.000071355986,0.000016252143,0.00013181784],"genre_scores_gemma":[0.99636155,0.000110668916,0.002528001,0.00026337733,0.000071881404,0.000026820802,0.00042009662,0.000038036545,0.00017955969],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99855626,0.00017104758,0.00030060092,0.00048530198,0.00004675311,0.00044002783],"domain_scores_gemma":[0.9990847,0.0000045390693,0.00020487829,0.00053782255,0.00005497832,0.000113071554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019513737,0.00025098276,0.00030759373,0.000049453658,0.00005787959,0.000014000527,0.00026564722,0.000594575,0.000016334936],"category_scores_gemma":[0.000010253534,0.00022778475,0.00007696475,0.000092656264,0.00017114579,0.000007336658,0.00033279054,0.00015629093,0.000002132033],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017104216,0.00023433329,0.00082402024,0.000040194347,0.000045972847,0.0000014537693,0.000079723584,0.000007593618,0.9979441,0.000007361353,0.00048005045,0.00016414921],"study_design_scores_gemma":[0.0012608323,0.00036657613,0.00011552234,0.000017535021,0.00004687762,0.00003361407,0.000022107095,0.0000036601664,0.9780444,0.00000924895,0.019830838,0.000248775],"about_ca_topic_score_codex":0.00003091598,"about_ca_topic_score_gemma":0.000005664141,"teacher_disagreement_score":0.01989969,"about_ca_system_score_codex":0.000008461392,"about_ca_system_score_gemma":0.000021638396,"threshold_uncertainty_score":0.92887926},"labels":[],"label_agreement":null},{"id":"W2111436014","doi":"10.1099/mic.0.28735-0","title":"Flagellar glycosylation – a new component of the motility repertoire?","year":2006,"lang":"en","type":"review","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":230,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Flagellum; Flagellin; Biology; Caulobacter crescentus; Glycosylation; Pilus; Salmonella enterica; Bacteria; Escherichia coli; Microbiology; Cell biology; Salmonella; Genetics; Bacterial protein; Gene","score_opus":0.015207278716706681,"score_gpt":0.24913153244606315,"score_spread":0.23392425372935646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111436014","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0063497885,0.9919341,0.000077150515,0.00006546209,0.000663373,0.0005488647,0.00023802897,0.0000118414055,0.00011135932],"genre_scores_gemma":[0.0012705404,0.9953997,0.00029439392,0.000045937835,0.00035296867,0.000011189059,0.0015164128,0.000038678292,0.0010701785],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982721,0.00024194957,0.0006289123,0.0005431804,0.000036014142,0.00027781795],"domain_scores_gemma":[0.99847484,0.000014594698,0.00049292407,0.00093047594,0.000052987656,0.000034181045],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00014370127,0.0003430726,0.0008663504,0.000056671815,0.000057857873,0.000007917153,0.0006226787,0.0013566843,0.000023281948],"category_scores_gemma":[0.000039843548,0.00022567609,0.00052637805,0.00014712504,0.00026472594,5.965562e-7,0.0004851598,0.0002287591,0.000013070365],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016172016,0.00007494098,0.000019427045,0.0010124831,0.00015658731,0.0000010900561,0.000003175052,0.0000018332147,0.73447055,0.000027133776,0.0067881327,0.2574285],"study_design_scores_gemma":[0.00015240908,0.000103679646,0.000027224438,0.00026166643,0.00016008304,0.00009215863,4.833051e-7,3.527191e-7,0.040907346,0.000021215023,0.95808995,0.00018344431],"about_ca_topic_score_codex":0.00010702685,"about_ca_topic_score_gemma":0.00012587853,"teacher_disagreement_score":0.9513018,"about_ca_system_score_codex":0.00002923415,"about_ca_system_score_gemma":0.0002797601,"threshold_uncertainty_score":0.99993974},"labels":[],"label_agreement":null},{"id":"W2111492198","doi":"10.1186/1471-2105-7-423","title":"Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs","year":2006,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; Université de Sherbrooke","keywords":"Promoter; Biology; Genetics; Computational biology; Bacterial genome size; Genome; Gene; Intergenic region; Transcription (linguistics); DNA sequencing; Regulatory sequence; DNA microarray; Transcription factor; Gene expression","score_opus":0.0061610793041830285,"score_gpt":0.18525158885705942,"score_spread":0.1790905095528764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111492198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9731541,0.00013439069,0.0260254,0.00004435807,0.000121582445,0.00025020834,0.00017631052,0.000009783348,0.000083832085],"genre_scores_gemma":[0.9941735,0.00004044184,0.0052032154,0.000017263186,0.00009032257,0.0000053967005,0.00044538872,0.000008027249,0.000016442282],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926406,0.00002458621,0.0003986645,0.00009642103,0.00008262737,0.00013364169],"domain_scores_gemma":[0.9993205,0.000012649974,0.00026798536,0.0003197459,0.00006274093,0.000016352225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001237726,0.00010296341,0.00012593738,0.000017677636,0.000039580755,0.00000973203,0.00018745488,0.00017531686,0.0000027759977],"category_scores_gemma":[0.00003836182,0.00007489974,0.000079493904,0.00008296416,0.00015511831,0.0000035195417,0.00009317065,0.000056108795,0.0000031691782],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000566377,0.00004234201,0.004883271,0.00005364596,0.000023546547,6.494353e-8,0.000025814592,0.00017791921,0.9910315,0.000059965718,0.00018809165,0.0034571819],"study_design_scores_gemma":[0.0003593679,0.00027842485,0.076638244,0.000016578322,0.00003530521,0.0000041567114,0.00008862045,0.0047807912,0.9149039,0.00017606284,0.002603507,0.00011505647],"about_ca_topic_score_codex":0.00015893271,"about_ca_topic_score_gemma":0.0001534691,"teacher_disagreement_score":0.07612763,"about_ca_system_score_codex":0.000011061913,"about_ca_system_score_gemma":0.00004496582,"threshold_uncertainty_score":0.30543226},"labels":[],"label_agreement":null},{"id":"W2111520543","doi":"10.3168/jds.s0022-0302(02)74292-6","title":"Response of Staphylococcus aureus Isolates from Bovine Mastitis to Exogenous Iron Sources","year":2002,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; School of Medicine, Vanderbilt University; Vanderbilt University","keywords":"Lactoferrin; Hemin; Staphylococcus aureus; Transferrin; Ferrichrome; Microbiology; Ferritin; Iron-binding proteins; Siderophore; Heme; Biochemistry; Chemistry; Hemoglobin; Biology; Bacteria; Escherichia coli; Enzyme; Bacterial outer membrane","score_opus":0.00994294760024728,"score_gpt":0.22332079722467013,"score_spread":0.21337784962442286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111520543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970905,0.0012786165,0.00033169577,0.00083455787,0.00031653247,0.000058922877,0.000039449096,0.0000030855338,0.000046618752],"genre_scores_gemma":[0.9955233,0.00018435194,0.0038048893,0.00017751245,0.00017808663,5.7825105e-7,0.0000010336713,0.0000072067505,0.00012308308],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989711,0.000045124176,0.00033735464,0.00020871349,0.0002080691,0.00022965991],"domain_scores_gemma":[0.99910337,0.000019469433,0.0002627857,0.00028578023,0.00019196807,0.00013664142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004653303,0.000104729486,0.00017442743,0.00016488358,0.00007642237,0.000031318814,0.00062644645,0.00011454877,0.00006609101],"category_scores_gemma":[0.0002828887,0.000085549225,0.00007041436,0.0002707744,0.0003228967,0.000008610066,0.00018458994,0.00009408315,0.000006342981],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048056492,0.00005816968,0.0010899064,0.000002224067,0.000011012376,0.000008626315,0.0001367046,0.000057756028,0.994451,0.0000024727892,0.0007649367,0.0029366673],"study_design_scores_gemma":[0.00032709597,0.0036810571,0.012426764,0.000021098791,0.000011571078,0.000033427576,0.00009436629,0.00003783857,0.9627466,0.000031511805,0.020471353,0.000117311116],"about_ca_topic_score_codex":0.000016927164,"about_ca_topic_score_gemma":0.00001367133,"teacher_disagreement_score":0.031704355,"about_ca_system_score_codex":0.000015716909,"about_ca_system_score_gemma":0.00009482614,"threshold_uncertainty_score":0.3488596},"labels":[],"label_agreement":null},{"id":"W2111584550","doi":"10.1042/0264-6021:3600699","title":"Determination of the native form of FadD, the Escherichia coli fatty acyl-CoA synthetase, and characterization of limited proteolysis by outer membrane protease OmpT","year":2001,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Medical Research Council; Medical Research Council Canada","keywords":"FADD; Biochemistry; Proteolysis; Enzyme; Escherichia coli; Bacterial outer membrane; Biology; Fatty acid; Protease; Cleavage (geology); Chemistry; Molecular biology; Gene; Caspase","score_opus":0.0066289315553546,"score_gpt":0.21374593798642025,"score_spread":0.20711700643106565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111584550","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99791867,0.00012236877,0.0007983315,0.00063771586,0.00005318338,0.00036753205,0.00008696712,0.000002135823,0.000013096341],"genre_scores_gemma":[0.99891007,0.00037881278,0.00048516583,0.000058405007,0.00006900952,0.000015560414,0.000043256918,0.000009900031,0.000029838084],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912894,0.000076009674,0.00036429986,0.0001501104,0.00014996654,0.00013067269],"domain_scores_gemma":[0.9990262,0.000012356947,0.0004933455,0.00021200265,0.00021555973,0.000040557712],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018398347,0.00012138805,0.0001803692,0.000032530053,0.00005811599,0.00001249834,0.00024999277,0.00022744077,0.000010523907],"category_scores_gemma":[0.00013410869,0.00007166761,0.00009777432,0.00015054934,0.0002952431,0.0000058544947,0.00013236406,0.0001410799,1.1162474e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018611056,0.000096239084,0.0005707602,0.000026925625,0.000047240148,3.5295577e-7,0.000047261492,1.2471648e-7,0.9955586,0.0000052748733,0.000029854971,0.0034312422],"study_design_scores_gemma":[0.00039500283,0.00019581364,0.0032409984,0.00003821539,0.00004972216,0.000036712652,0.000026559777,0.00008389096,0.9950174,0.00004198578,0.00079188345,0.00008178909],"about_ca_topic_score_codex":0.0000046299733,"about_ca_topic_score_gemma":0.0000013248404,"teacher_disagreement_score":0.0033494532,"about_ca_system_score_codex":0.000008360826,"about_ca_system_score_gemma":0.000043656994,"threshold_uncertainty_score":0.292252},"labels":[],"label_agreement":null},{"id":"W2111590480","doi":"10.1099/mic.0.28255-0","title":"Subcellular localization and functional domains of the coupling protein, TraG, from IncHI1 plasmid R27","year":2005,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale","keywords":"Biology; Immunoprecipitation; Plasmid; Subcellular localization; Cytoplasm; Periplasmic space; Cell biology; Secretion; Gene; Biochemistry; Escherichia coli","score_opus":0.004373706724597317,"score_gpt":0.17151776799040996,"score_spread":0.16714406126581266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111590480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99553174,0.00084523024,0.0026884952,0.0004797348,0.0001553989,0.0001766092,0.00008592119,0.0000076230904,0.00002922465],"genre_scores_gemma":[0.99845386,0.00008232995,0.0006129862,0.00022825232,0.00020499215,0.00000760818,0.00029266984,0.000011142419,0.000106140615],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99933654,0.000031738524,0.00019453526,0.00026211454,0.000024381708,0.00015071595],"domain_scores_gemma":[0.99961495,0.000006062072,0.00009405062,0.00022082884,0.000042244217,0.000021876816],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000072663766,0.00011338971,0.00012577469,0.000023539233,0.000073874864,0.0000061677724,0.00012488122,0.0003519382,0.00003674876],"category_scores_gemma":[0.000019334191,0.00008525291,0.00004706316,0.000052213007,0.00026766694,0.0000014407298,0.00015640398,0.00008523822,0.0000037164984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058383048,0.00003243483,0.0013992764,0.0000051661423,0.000031850836,1.7937711e-7,0.0000124254,0.0001945502,0.9974074,0.00013207986,0.00027715924,0.0004491389],"study_design_scores_gemma":[0.00042923586,0.000106535146,0.0012352486,0.000007705516,0.000013106162,0.000014751592,0.00001055228,0.00017639602,0.91277117,0.000079496946,0.08506002,0.000095797004],"about_ca_topic_score_codex":0.00002366034,"about_ca_topic_score_gemma":0.00015579659,"teacher_disagreement_score":0.08478287,"about_ca_system_score_codex":0.000008708119,"about_ca_system_score_gemma":0.000036259935,"threshold_uncertainty_score":0.34765127},"labels":[],"label_agreement":null},{"id":"W2111854172","doi":"10.1073/pnas.032464699","title":"Solution structure and stability of the anti-sigma factor AsiA: Implications for novel functions","year":2002,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; University of Toronto; National Institutes of Health; National Science Foundation","keywords":"Dimer; Promoter; Bacteriophage; Binding site; Sigma factor; Transcription factor; Crystallography; Transcription (linguistics); Biology; Escherichia coli; Chemistry; Biophysics; Stereochemistry; Gene; Biochemistry; Gene expression","score_opus":0.04502638381329701,"score_gpt":0.277871531733307,"score_spread":0.23284514792000996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111854172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940061,0.00010808145,0.000021995538,0.005260811,0.000022507873,0.00018572825,0.00028897764,0.0000017293358,0.000104068335],"genre_scores_gemma":[0.9990583,0.000038608603,0.00079260115,0.000041841187,0.000040960174,0.0000055450255,5.2401066e-7,0.0000018101545,0.000019789612],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99948233,0.0000022830202,0.00015532562,0.00015703814,0.0001291604,0.0000738304],"domain_scores_gemma":[0.99954516,0.000013604276,0.00021327061,0.00001486078,0.00020190259,0.000011220401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014690789,0.000050470546,0.00006907222,0.000026539275,0.00014890448,0.00000635726,0.00030618705,0.00012867755,0.0000042197967],"category_scores_gemma":[0.00019187314,0.00002975622,0.000047011097,0.00018707424,0.0006822693,0.000007919916,0.00009739903,0.000052709085,1.8465313e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000032618907,0.000022313307,0.008586069,0.000016366263,0.000007833344,1.4787822e-11,0.000013704455,0.0000029267644,0.9877512,0.003155297,0.00014195345,0.0002990888],"study_design_scores_gemma":[0.0000843343,0.00004393505,0.21679778,0.0000049677938,0.000007040523,0.0000020566445,0.000019426787,0.00010314135,0.77984077,0.0025631823,0.00050512794,0.000028268327],"about_ca_topic_score_codex":0.0000013470487,"about_ca_topic_score_gemma":3.7013922e-7,"teacher_disagreement_score":0.2082117,"about_ca_system_score_codex":0.0000052658384,"about_ca_system_score_gemma":0.000012059787,"threshold_uncertainty_score":0.25138494},"labels":[],"label_agreement":null},{"id":"W2111913844","doi":"10.1128/iai.68.2.925-930.2000","title":"Identification of the Operon for the Sorbitol (Glucitol) Phosphoenolpyruvate:Sugar Phosphotransferase System in <i>Streptococcus mutans</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Dental and Craniofacial Research; Medical Research Council; National Institutes of Health; Medical Research Council Canada","keywords":"PEP group translocation; Biology; Operon; Sorbitol; Transposon mutagenesis; Gene; Phosphotransferase; Permease; Open reading frame; Genetics; Phosphoenolpyruvate carboxykinase; Microbiology; Transposable element; Biochemistry; Escherichia coli; Mutant","score_opus":0.005564318066972615,"score_gpt":0.21679401728695047,"score_spread":0.21122969921997786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111913844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982703,0.00043376844,0.00021003332,0.00012628129,0.00027525894,0.00054236804,0.000032876913,0.0000100280195,0.000099089375],"genre_scores_gemma":[0.9987174,0.0009675761,0.000006425703,0.00005079253,0.00003966427,0.000079091784,0.000016445001,0.00000869656,0.00011385157],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993766,0.000060520986,0.00024896764,0.00015166937,0.000046060177,0.00011619269],"domain_scores_gemma":[0.99949044,0.000013776235,0.00006253121,0.000356165,0.00006188615,0.000015180324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022636582,0.000095302916,0.000099254015,0.000018225735,0.00016962331,0.0000218379,0.00014626453,0.0001697365,0.0000151479635],"category_scores_gemma":[0.000024874671,0.00006202727,0.000060530314,0.00013909375,0.00012771171,0.0000037486466,0.00003435109,0.00010891205,0.0000013864303],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010506863,0.000054287615,0.0020522792,0.000031543128,0.000020992871,6.0530176e-8,0.00006599981,0.000058615526,0.98055166,0.000060511677,0.000048158163,0.016950814],"study_design_scores_gemma":[0.0005184885,0.00012895353,0.03703998,0.000018368119,0.00001992505,0.0000068818754,0.00007570811,0.00021928575,0.9467331,0.00001821448,0.015143601,0.00007746771],"about_ca_topic_score_codex":0.0007544531,"about_ca_topic_score_gemma":0.0003675884,"teacher_disagreement_score":0.0349877,"about_ca_system_score_codex":0.000013108569,"about_ca_system_score_gemma":0.000029394958,"threshold_uncertainty_score":0.25293985},"labels":[],"label_agreement":null},{"id":"W2112084168","doi":"10.1111/j.1365-2958.2005.04703.x","title":"Weapons of mass retraction","year":2005,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":203,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Foundation","keywords":"Pilus; Periplasmic space; Biology; Flagellum; Bacterial conjugation; Fimbriae Proteins; Secretion; Cell envelope; Function (biology); Virulence; Bacteria; Cell biology; Computational biology; Microbiology; Escherichia coli; Genetics; Gene; Biochemistry","score_opus":0.012762407475295275,"score_gpt":0.276006894292041,"score_spread":0.2632444868167457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112084168","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00056081446,0.9971569,0.00048307146,0.00003669879,0.0006000762,0.00043348537,0.0002678121,0.000019486686,0.00044166352],"genre_scores_gemma":[0.00039009494,0.99505717,0.001768835,0.00006940095,0.00030713185,0.000035966095,0.001893266,0.0000801655,0.00039800047],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979463,0.0002375021,0.000676965,0.00069513434,0.000044306515,0.00039974783],"domain_scores_gemma":[0.9985268,0.000012263842,0.0005063119,0.00081103656,0.00008554736,0.0000580583],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00017383012,0.00046530526,0.0011464491,0.00019564551,0.0000348697,0.000009956259,0.0005338066,0.0026197496,0.00006274263],"category_scores_gemma":[0.000053803433,0.00042024418,0.0006137945,0.00018196102,0.00024845905,0.0000010875985,0.00023563218,0.0004096088,0.000057692032],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010423727,0.000034622364,3.258141e-7,0.0004491713,0.00018861465,0.0000056891563,8.806743e-7,6.427669e-7,0.6833119,0.00005747508,0.00055051426,0.31538972],"study_design_scores_gemma":[0.00014966553,0.00028202182,3.104896e-7,0.00028773092,0.00026712034,0.00019871749,0.0000015615506,1.430498e-7,0.09964076,0.000010018819,0.89881045,0.00035151583],"about_ca_topic_score_codex":0.0000040157142,"about_ca_topic_score_gemma":0.0000046241835,"teacher_disagreement_score":0.89825994,"about_ca_system_score_codex":0.000030957697,"about_ca_system_score_gemma":0.00019381149,"threshold_uncertainty_score":0.99982494},"labels":[{"model":"gemma","categories":["metaresearch","research_integrity"],"domain":"evaluation","study_design":"not_applicable","genre":"review","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":["metaresearch","scholarly_communication","research_integrity"],"domain":"evaluation","study_design":"design_other","genre":"review","about_ca_system":false,"about_ca_topic":false,"confidence":"low"}],"label_agreement":"split"},{"id":"W2112087938","doi":"10.1128/jb.186.17.5596-5602.2004","title":"Functional Characterization of an Aminotransferase Required for Pyoverdine Siderophore Biosynthesis in <i>Pseudomonas aeruginosa</i> PAO1","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Pyoverdine; Siderophore; Biology; Pseudomonas aeruginosa; Microbiology; Biosynthesis; Pseudomonadaceae; Pseudomonadales; Pseudomonas; Bacteria; Enzyme; Biochemistry; Genetics","score_opus":0.011992001466434846,"score_gpt":0.22511648420841907,"score_spread":0.21312448274198423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112087938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950545,0.000080434096,0.0033782318,0.0007258985,0.00047925528,0.00017591381,0.00009390155,0.0000038228186,0.0000080630425],"genre_scores_gemma":[0.9967408,0.00034696131,0.0020521241,0.00017722664,0.00042775788,0.000008262181,0.00021558661,0.000021204673,0.000010066506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871564,0.000072598334,0.0006750416,0.00023150793,0.00008159375,0.00022361263],"domain_scores_gemma":[0.99910206,0.000018852272,0.00038535387,0.00020746727,0.00021546193,0.00007077977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027916074,0.0001674246,0.00039090644,0.00017386666,0.000030722196,0.000009975027,0.00019964825,0.00041526917,0.00001696301],"category_scores_gemma":[0.000092439266,0.0001490016,0.0001531774,0.00010620113,0.00014098718,0.000014486498,0.00003776031,0.00011520917,6.4152215e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014227147,0.00021658899,0.00060135656,0.00002044262,0.00005706092,0.000008744444,0.000020870964,0.00006198846,0.99326247,0.0001266326,0.000009315645,0.004191788],"study_design_scores_gemma":[0.0022288552,0.0026318086,0.034685966,0.000032520966,0.000031699088,0.00019621434,0.000026765734,0.0000071547447,0.9577804,0.000234317,0.0019912133,0.00015305527],"about_ca_topic_score_codex":0.000013508873,"about_ca_topic_score_gemma":0.00004342678,"teacher_disagreement_score":0.035482064,"about_ca_system_score_codex":0.000038570564,"about_ca_system_score_gemma":0.00017015831,"threshold_uncertainty_score":0.60761094},"labels":[],"label_agreement":null},{"id":"W2112294594","doi":"10.1128/aem.71.3.1364-1372.2005","title":"The Doubly Phosphorylated Form of HPr, HPr(Ser-P)(His∼P), Is Abundant in Exponentially Growing Cells of<i>Streptococcus thermophilus</i>and Phosphorylates the Lactose Transporter LacS as Efficiently as HPr(His∼P)","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; Novalait; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"PEP group translocation; Streptococcus thermophilus; Biology; Phosphorylation; Phosphoenolpyruvate carboxykinase; Biochemistry; Lactose; Molecular biology; Enzyme; Lactobacillus","score_opus":0.0021904636504554236,"score_gpt":0.16894983349950868,"score_spread":0.16675936984905326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112294594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99563026,0.0030229143,0.000009787317,0.00044500828,0.00009805037,0.0005159381,0.00011035753,0.000007117942,0.00016054798],"genre_scores_gemma":[0.99433905,0.004757887,0.00006744958,0.00048044743,0.00004332243,0.00003114545,0.0001311341,0.000029373676,0.000120202756],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99849087,0.000037607886,0.00050316844,0.0004957055,0.00006310849,0.0004095475],"domain_scores_gemma":[0.9993093,0.000033965316,0.00021196295,0.00038049673,0.000007795397,0.000056497327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021815258,0.00030461236,0.00032796373,0.00004002782,0.00014715114,0.000016115026,0.00032282682,0.00044428767,0.000066063476],"category_scores_gemma":[0.0000025418383,0.0002041957,0.00010316692,0.00006691083,0.000966104,0.000006287794,0.00023105461,0.00020301659,0.000010809049],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036665652,0.00013729738,0.00055184,0.000012001555,0.00009356612,0.0000017439972,0.00049005536,0.00002021422,0.9898189,0.00010669546,0.00004515567,0.008355873],"study_design_scores_gemma":[0.0012420702,0.00038444513,0.0032675997,0.00001087731,0.000041991618,0.000030526488,0.00039031348,0.000009798426,0.9665999,0.00012227123,0.027665948,0.00023426862],"about_ca_topic_score_codex":0.00008159178,"about_ca_topic_score_gemma":0.00006287572,"teacher_disagreement_score":0.027620792,"about_ca_system_score_codex":0.000018711073,"about_ca_system_score_gemma":0.000025342682,"threshold_uncertainty_score":0.83268595},"labels":[],"label_agreement":null},{"id":"W2112295728","doi":"10.1534/g3.113.009597","title":"Extensive Cotransformation of Natural Variation into Chromosomes of Naturally Competent <i>Haemophilus influenzae</i>","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"National Institutes of Health; Canadian Institutes of Health Research; Genome British Columbia; Canada's Michael Smith Genome Sciences Centre","keywords":"Biology; Genetics; Homologous recombination; Recombination; Genetic recombination; Gene conversion; Haemophilus influenzae; Gene; Population; Genome; DNA; Bacteria","score_opus":0.005300973584444003,"score_gpt":0.21464985000162548,"score_spread":0.20934887641718147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112295728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90055496,0.09556731,0.0025976044,0.00015532826,0.0006030041,0.0003409618,0.000043361215,0.000017282859,0.00012018301],"genre_scores_gemma":[0.9635182,0.027083047,0.0086188745,0.00020419553,0.00024932603,0.000010221182,0.00025196568,0.00003055648,0.00003361556],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983841,0.0000873582,0.00064187136,0.00037052113,0.00023043892,0.0002857164],"domain_scores_gemma":[0.9984249,0.000018189607,0.00040093166,0.00057170517,0.0005161707,0.0000681051],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018758427,0.00026674528,0.0003796087,0.00012315302,0.00006838652,0.000015469353,0.00039581873,0.0003720092,0.000008956471],"category_scores_gemma":[0.000016371496,0.0002532701,0.0001559396,0.00018904234,0.00023214106,0.000005990341,0.00018515636,0.00011259994,0.0000044645535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007589526,0.000041494593,0.00052199716,0.000093102266,0.0000867928,2.639444e-7,0.00016365267,0.00088432204,0.82389235,0.00019976785,0.000025855397,0.17401451],"study_design_scores_gemma":[0.0007876483,0.00081457116,0.0052806553,0.000019014677,0.00006553901,0.000017858556,0.000054219683,0.0007037068,0.9317666,0.00048794033,0.059695728,0.00030651243],"about_ca_topic_score_codex":0.000019123394,"about_ca_topic_score_gemma":0.00003925624,"teacher_disagreement_score":0.17370799,"about_ca_system_score_codex":0.000018091698,"about_ca_system_score_gemma":0.0000921031,"threshold_uncertainty_score":0.99999195},"labels":[],"label_agreement":null},{"id":"W2112767288","doi":"10.1111/j.1574-6968.2006.00366.x","title":"Identification of acquired DNA in<i>Neisseria lactamica</i>","year":2006,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Neisseria; Biology; Genome; Genetics; Operon; Gene; Microbiology; Bacteria; Escherichia coli","score_opus":0.003431593597970077,"score_gpt":0.19322821242852656,"score_spread":0.18979661883055648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112767288","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980925,0.00019777764,0.0001541438,0.0009830631,0.00032176124,0.0001466424,0.00004509004,0.000012494918,0.0000465556],"genre_scores_gemma":[0.9986509,0.000037774258,0.00018891343,0.00044108462,0.00013252019,0.000011205867,0.00042429465,0.000015752892,0.00009754271],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894404,0.000056735975,0.00038996743,0.00033864382,0.000017649012,0.00025298313],"domain_scores_gemma":[0.9994527,0.0000059114623,0.0001705479,0.00032555847,0.000029887808,0.000015382639],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001319773,0.0001389583,0.00018086926,0.0000925637,0.000024340807,0.000007693955,0.0002443867,0.00032502544,0.000010083743],"category_scores_gemma":[0.000013493366,0.0001393903,0.000066221226,0.0001154459,0.0002346925,0.0000021575588,0.00008594795,0.000042668744,0.0000132055575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051845567,0.0000533738,0.0037847203,0.000006868543,0.000015162517,0.0000013380594,0.0000062613026,0.000019996176,0.9938996,0.0000507273,0.0019350582,0.00017509118],"study_design_scores_gemma":[0.00042278218,0.00007006877,0.017515987,0.000005099547,0.0000070399524,0.000020482488,0.0000072239204,0.0000031189707,0.9705249,0.000034606463,0.01124457,0.00014413071],"about_ca_topic_score_codex":0.00004803452,"about_ca_topic_score_gemma":0.000103670696,"teacher_disagreement_score":0.023374666,"about_ca_system_score_codex":0.000012766272,"about_ca_system_score_gemma":0.00001955421,"threshold_uncertainty_score":0.56841713},"labels":[],"label_agreement":null},{"id":"W2112882791","doi":"10.1084/jem.20020005","title":"Multidrug Efflux Systems Play an Important Role in the Invasiveness of <i>Pseudomonas aeruginosa </i>","year":2002,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":257,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; University of British Columbia","funders":"","keywords":"Pseudomonas aeruginosa; Efflux; Virulence; Microbiology; Biology; Complementation; Mutant; Phenotype; Pseudomonadaceae; Pathogen; Bacteria; Gene; Genetics","score_opus":0.014604940372470482,"score_gpt":0.2553022309735991,"score_spread":0.24069729060112863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112882791","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98366565,0.015135359,0.000009533165,0.0005031544,0.0003324191,0.00017301465,0.000004256452,0.0000015763788,0.00017502718],"genre_scores_gemma":[0.9979296,0.0013544724,0.000038279682,0.00020015963,0.00043883987,0.0000040601344,0.0000055012297,0.000010486344,0.000018641635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877876,0.00020189524,0.000541918,0.00010185579,0.00021899318,0.00015659154],"domain_scores_gemma":[0.9991684,0.00003504586,0.00037643488,0.0003136383,0.000057518486,0.000048994923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007231655,0.00013078547,0.00025364655,0.00005436188,0.000041614865,0.000005884286,0.00051451055,0.00011209866,0.000027090406],"category_scores_gemma":[0.00004540168,0.000064140906,0.000049096576,0.00009618002,0.00026016342,0.0000049549003,0.000061396044,0.00015876429,7.746079e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012918339,0.00019032008,0.00073769235,0.0000056775143,0.000029538569,0.0000106173375,0.0013470993,0.00002409165,0.99695045,0.000048811853,0.00034734656,0.00017918754],"study_design_scores_gemma":[0.0013973231,0.0025189838,0.00085953233,0.00007071556,0.000029229142,0.0006161448,0.007646393,0.00008977355,0.983688,0.000014330098,0.0029837547,0.00008581853],"about_ca_topic_score_codex":0.0001003904,"about_ca_topic_score_gemma":0.000015904188,"teacher_disagreement_score":0.014263899,"about_ca_system_score_codex":0.000012469209,"about_ca_system_score_gemma":0.000017554372,"threshold_uncertainty_score":0.26155904},"labels":[],"label_agreement":null},{"id":"W2113348899","doi":"10.1074/jbc.m302371200","title":"The Molecular Basis for the pH-activation Mechanism in the Channel-forming Bacterial Colicin E1","year":2003,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Colicin; Chemistry; Coiled coil; Mutant; Biophysics; Membrane; Bilayer; Biochemistry; Crystallography; Stereochemistry; Escherichia coli; Biology","score_opus":0.01674815136239757,"score_gpt":0.24173138404081215,"score_spread":0.22498323267841458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113348899","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951008,0.00051153667,0.0019791385,0.001800362,0.00023315949,0.00022187868,0.0000085786105,0.0000025813297,0.00014195059],"genre_scores_gemma":[0.9982621,0.0006646976,0.00020425217,0.00036771662,0.0004234031,0.00003024317,0.000009615615,0.000008580894,0.000029404102],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902225,0.000096938296,0.0003586908,0.00015736697,0.00010898463,0.00025576638],"domain_scores_gemma":[0.9991878,0.00014831373,0.00027904255,0.00024439217,0.00010684143,0.000033558914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010149858,0.00014344307,0.00015704191,0.000011751395,0.00017683675,0.000051327574,0.000507475,0.00035716256,0.000012895156],"category_scores_gemma":[0.0007857111,0.00006268821,0.00016530625,0.00009568589,0.00013291072,0.0000029328028,0.000054864264,0.00023536991,3.5821085e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001889767,0.00003780776,0.000012671611,0.00000484909,0.000036308735,0.0000019921154,0.000016424647,0.000009429629,0.9981384,0.00047914233,0.000145064,0.00092888635],"study_design_scores_gemma":[0.0004155431,0.0003177481,0.00014291865,0.000009721055,0.0000151497,0.000085126485,0.00030974002,0.000012466221,0.9422698,0.0013944608,0.05493474,0.0000925776],"about_ca_topic_score_codex":0.0000021566298,"about_ca_topic_score_gemma":0.0000022922873,"teacher_disagreement_score":0.055868637,"about_ca_system_score_codex":0.00001991313,"about_ca_system_score_gemma":0.00006546608,"threshold_uncertainty_score":0.2754765},"labels":[],"label_agreement":null},{"id":"W2113501585","doi":"10.1128/jb.01187-08","title":"Characterization of the Autocleavage Process of the <i>Escherichia coli</i> HtrA Protein: Implications for its Physiological Role","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Cleavage (geology); Escherichia coli; Chaperone (clinical); Protease; Biochemistry; Cleave; Protein folding; Biology; Mutant; Proteolysis; Cell biology; Biophysics; Chemistry; Enzyme","score_opus":0.013670508842076694,"score_gpt":0.23712498414141372,"score_spread":0.22345447529933704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113501585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997788,0.0000707307,0.00016503081,0.0012041018,0.00020689427,0.00046335126,0.00007804433,0.0000025431486,0.000021291726],"genre_scores_gemma":[0.9992113,0.00010616997,0.00020403306,0.00017372037,0.00019377682,0.000027942531,0.00001472995,0.0000115412195,0.000056762918],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904776,0.0001001955,0.0004936013,0.000143494,0.00006005636,0.00015487395],"domain_scores_gemma":[0.9984205,0.000009556753,0.0008860367,0.00028168465,0.0003730237,0.000029246838],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013128013,0.00011609317,0.0002767549,0.00002496939,0.00009422939,0.0000033532804,0.0005323589,0.00029761973,0.0000058152486],"category_scores_gemma":[0.00012923809,0.00006532765,0.00020165273,0.00012707847,0.00029246637,0.0000053032322,0.000114815084,0.00014182815,2.47787e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001539538,0.00009789551,0.0012780434,0.000025248439,0.000043849195,9.1905875e-8,0.00003700864,0.000007339354,0.9980093,0.00012280318,0.000035734574,0.00018873563],"study_design_scores_gemma":[0.00030125878,0.00059686194,0.22890142,0.000015542762,0.000018653458,0.00004352042,0.00001017731,0.000005744222,0.7666365,0.00012834695,0.0032844986,0.000057486555],"about_ca_topic_score_codex":8.444196e-7,"about_ca_topic_score_gemma":0.0000015496702,"teacher_disagreement_score":0.2313728,"about_ca_system_score_codex":0.000007669222,"about_ca_system_score_gemma":0.00020037449,"threshold_uncertainty_score":0.26639843},"labels":[],"label_agreement":null},{"id":"W2113690180","doi":"10.1128/aac.02352-14","title":"Discovery of Novel Cell Wall-Active Compounds Using P <sub> <i>ywaC</i> </sub> , a Sensitive Reporter of Cell Wall Stress, in the Model Gram-Positive Bacterium Bacillus subtilis","year":2014,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Bacillus subtilis; Cell wall; Bacterial cell structure; Biology; Cell; Bacteria; Drug discovery; Cell growth; Microbiology; Lipid II; Gram-positive bacteria; Antimicrobial; Biochemistry; Peptidoglycan; Genetics","score_opus":0.009534395451235045,"score_gpt":0.21303611588773913,"score_spread":0.20350172043650408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113690180","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973742,0.000015808037,0.0015192585,0.0002802166,0.00006903336,0.00029475294,0.00027276442,0.0000041868484,0.00016980551],"genre_scores_gemma":[0.99674153,0.0006199128,0.00067581545,0.0016468299,0.000059941776,0.0000029443243,0.000191355,0.000031797925,0.000029883242],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868363,0.00006740865,0.0004084976,0.00044055065,0.00011026504,0.0002896377],"domain_scores_gemma":[0.9991425,0.00001501666,0.00034870833,0.00034831837,0.00011256572,0.000032845455],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015359708,0.00027215417,0.00037093047,0.00005720976,0.000058893973,0.00003509092,0.00020297155,0.0003026183,0.0000011501958],"category_scores_gemma":[0.0000046844416,0.00021671665,0.00013453013,0.00010417135,0.0002809053,0.000013908739,0.00010888755,0.00012551881,1.7363539e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036425717,0.000538399,0.0006251321,0.000048175516,0.000054825257,0.000002550285,0.0004470611,0.00008941536,0.9972974,0.000009432919,0.00018355419,0.00033977185],"study_design_scores_gemma":[0.0015651477,0.00030400415,0.0030118758,0.000044298682,0.000037707297,0.000018787707,0.0000923807,0.0016631457,0.9926601,0.000012104029,0.00034438382,0.00024606573],"about_ca_topic_score_codex":0.0001717619,"about_ca_topic_score_gemma":0.00007443637,"teacher_disagreement_score":0.0046373266,"about_ca_system_score_codex":0.000013530302,"about_ca_system_score_gemma":0.000055065993,"threshold_uncertainty_score":0.88374484},"labels":[],"label_agreement":null},{"id":"W2113722906","doi":"10.1128/jb.184.5.1458-1461.2002","title":"Glucose-Resistant Sporulation in <i>Bacillus subtilis crsA47</i> Mutants Does Not Depend on Promoter Switching at the <i>spo0A</i> Gene","year":2002,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Bacillus subtilis; Biology; Mutant; Gene; Promoter; Phenotype; Spore; Mutation; Genetics; Strain (injury); Molecular biology; Gene expression; Microbiology; Bacteria","score_opus":0.0113597233347461,"score_gpt":0.21701780113264754,"score_spread":0.20565807779790143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113722906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996151,0.00065960025,0.00004142912,0.0020502731,0.00075222127,0.00017761589,0.000036950532,0.0000057595576,0.0001252093],"genre_scores_gemma":[0.9973892,0.001064061,0.00022089439,0.00063354825,0.00047139343,0.0000049121722,0.00001721874,0.000027291408,0.00017148883],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982351,0.00018184754,0.0007136391,0.00033253795,0.00015804495,0.00037885347],"domain_scores_gemma":[0.9988546,0.00003595259,0.0005247507,0.00040539695,0.00010099379,0.00007830445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004745474,0.00024443894,0.0003710298,0.00012298285,0.00010633338,0.000031377498,0.00038595428,0.00045393308,0.00013048317],"category_scores_gemma":[0.00009750792,0.00014599597,0.00015953422,0.000106928026,0.00010891997,0.000009005249,0.00014592893,0.00034785038,0.00001621649],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00088958733,0.00009580423,0.0012261603,0.000007415021,0.000051368377,0.000056708166,0.00006389054,0.000036182653,0.9902021,0.000010165304,0.00009202639,0.007268558],"study_design_scores_gemma":[0.0010962732,0.0012185107,0.017780129,0.000025512054,0.000025721396,0.00042599387,0.000023948682,0.000042175587,0.94478595,0.000057723246,0.034308758,0.00020927392],"about_ca_topic_score_codex":0.000019012261,"about_ca_topic_score_gemma":0.0003660949,"teacher_disagreement_score":0.04541615,"about_ca_system_score_codex":0.00006575454,"about_ca_system_score_gemma":0.000034777415,"threshold_uncertainty_score":0.5953543},"labels":[],"label_agreement":null},{"id":"W2114420357","doi":"10.1016/s0378-1097(03)00311-2","title":"Interactions of the<i>Caulobacter crescentus</i>XerC and XerD recombinases with the<i>E. coli dif</i>site","year":2003,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Caulobacter crescentus; Recombinase; Biology; Holliday junction; Escherichia coli; Chromosome segregation; Fusion protein; Cooperativity; Homologous recombination; Genetics; DNA; Maltose-binding protein; Cell biology; Gene; Chromosome; Recombination; Recombinant DNA; Bacterial protein","score_opus":0.0036766732537445025,"score_gpt":0.1811882913432819,"score_spread":0.17751161808953742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114420357","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99313533,0.0002311029,0.00006254807,0.0057168654,0.0004445581,0.0002300395,0.000057935464,0.000008559761,0.00011303421],"genre_scores_gemma":[0.9959167,0.00012889682,0.00021104518,0.003333333,0.000056131506,0.0000139654785,0.0000496537,0.000016853131,0.00027341652],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990871,0.00014558868,0.00017591688,0.0003096927,0.000027010494,0.0002546716],"domain_scores_gemma":[0.9993361,0.000020646521,0.00014052051,0.0004270601,0.000045119297,0.000030509891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009740014,0.00017530452,0.00016648557,0.000032093096,0.0001382039,0.00001622761,0.00021716763,0.00016542908,0.000025313688],"category_scores_gemma":[0.000023978642,0.00010199208,0.000073887175,0.00009726503,0.00063397124,0.0000029250925,0.0001368567,0.0001742223,0.0000049221308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000063461746,0.00003900168,0.0045290077,0.0000058271976,0.00006865967,0.0000010077621,0.000029795261,0.0000027766416,0.98494476,0.000041502433,0.010150901,0.00012331517],"study_design_scores_gemma":[0.00043172538,0.00015427565,0.0054849563,0.000015262558,0.000032949778,0.00016062423,0.000036035395,2.8603034e-7,0.6902245,0.000007860936,0.30331635,0.00013514275],"about_ca_topic_score_codex":0.000019008208,"about_ca_topic_score_gemma":0.00016752114,"teacher_disagreement_score":0.29472023,"about_ca_system_score_codex":0.000009467195,"about_ca_system_score_gemma":0.000028207973,"threshold_uncertainty_score":0.41591164},"labels":[],"label_agreement":null},{"id":"W2114657547","doi":"10.1111/j.1365-2958.2009.06686.x","title":"Inducer responses of BenM, a LysR‐type transcriptional regulator from <i>Acinetobacter baylyi</i> ADP1","year":2009,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"Basic Energy Sciences; U.S. Department of Energy; National Science Foundation","keywords":"Effector; Biology; Regulon; Transcription (linguistics); Transcriptional regulation; Mutant; Repressor; Biochemistry; Transcription factor; Inducer; Genetics; Cell biology; Gene","score_opus":0.006931168696742114,"score_gpt":0.21623714710442965,"score_spread":0.20930597840768753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114657547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955652,0.0021277098,0.0003770056,0.0008953023,0.0003455323,0.00019685317,0.00029320538,0.00002338623,0.00017585799],"genre_scores_gemma":[0.9942256,0.00014899805,0.0023613432,0.0017867833,0.00016539749,0.0000053620006,0.0010659168,0.000026970622,0.00021360622],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840283,0.00015755868,0.00041338685,0.0005912068,0.00006093163,0.00037409618],"domain_scores_gemma":[0.99901533,0.000011232606,0.0001467073,0.0005920339,0.0001588498,0.00007582663],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012262021,0.00028183058,0.00035804568,0.000104522114,0.000044679673,0.0000125149,0.00036994158,0.0007850728,0.00011621365],"category_scores_gemma":[0.000055007316,0.00026737267,0.00017813774,0.00015967329,0.00022670407,0.000003163481,0.00009099158,0.00017194565,0.000018550252],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006694268,0.00011568953,0.00025437598,0.0000041478097,0.00011078439,0.000010533214,0.000018453195,0.0000046038435,0.99618256,0.00027393355,0.00085993926,0.0014955349],"study_design_scores_gemma":[0.0007390422,0.0010180164,0.0047313236,0.0000119384395,0.000042762334,0.00005785799,0.000008171975,0.0000013144714,0.8934417,0.00031954353,0.09936275,0.00026560732],"about_ca_topic_score_codex":0.000020640824,"about_ca_topic_score_gemma":0.000014714227,"teacher_disagreement_score":0.102740906,"about_ca_system_score_codex":0.0000140965885,"about_ca_system_score_gemma":0.00010445435,"threshold_uncertainty_score":0.9999778},"labels":[],"label_agreement":null},{"id":"W2114719101","doi":"10.1111/j.1365-2958.2007.06055.x","title":"Activation of the Cpx regulon destabilizes the F plasmid transfer activator, TraJ, via the HslVU protease in <i>Escherichia coli</i>","year":2007,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; National Institutes of Health; Fondation pour la Recherche Médicale; Seoul National University","keywords":"Regulon; Biology; Plasmid; Escherichia coli; Protease; Microbiology; Bacterial conjugation; Enterobacteriaceae; Activator (genetics); Molecular biology; Genetics; Biochemistry; Gene; Enzyme","score_opus":0.0047594041621712305,"score_gpt":0.19900747470819502,"score_spread":0.19424807054602378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114719101","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99315935,0.00030618155,0.0031452465,0.0021250073,0.000203852,0.0009187669,0.000022072258,0.0000097018565,0.00010982959],"genre_scores_gemma":[0.9983467,0.000048104208,0.00015883528,0.0012282705,0.000060625644,0.000048680264,0.000041724597,0.000027859169,0.0000392129],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842787,0.00031551174,0.0003922368,0.00039076252,0.000067378314,0.00040625763],"domain_scores_gemma":[0.9990178,0.000044045115,0.00011829261,0.0007152863,0.00007272716,0.00003186944],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005575297,0.00023574324,0.00021374773,0.00004217487,0.00012223565,0.0000117665695,0.00066057465,0.0005230841,0.000012471499],"category_scores_gemma":[0.000083202336,0.00012788351,0.00016459635,0.00030442045,0.00063186174,0.0000031252466,0.00016275703,0.0003381199,0.0000018909644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030443966,0.000094458206,0.00034068685,0.000013274809,0.00004722055,0.0000015846299,0.00008162373,0.000029735249,0.9973554,0.00018803001,0.00009096709,0.0014525844],"study_design_scores_gemma":[0.0005496378,0.0002338075,0.0032596947,0.000014621815,0.00002025019,0.000026105972,0.00006246541,0.000005014109,0.9646464,0.00010547052,0.030917889,0.00015865221],"about_ca_topic_score_codex":0.0000696006,"about_ca_topic_score_gemma":0.00021466648,"teacher_disagreement_score":0.032709002,"about_ca_system_score_codex":0.000026401045,"about_ca_system_score_gemma":0.000097546486,"threshold_uncertainty_score":0.52149385},"labels":[],"label_agreement":null},{"id":"W2115519453","doi":"10.1128/jb.00085-11","title":"Age of Inoculum Strongly Influences Persister Frequency and Can Mask Effects of Mutations Implicated in Altered Persistence","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":201,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Regional Development Fund; Institute of Genetics; Eesti Teadusfondi; Keio University","keywords":"Multidrug tolerance; Biology; Microbiology; Bacteria; Escherichia coli; Stationary phase; Mutant; Antibiotics; Mutation frequency; Persistence (discontinuity); Amikacin; Virulence; Genetics; Gene; Biofilm","score_opus":0.015679265363573246,"score_gpt":0.22886593508568798,"score_spread":0.21318666972211472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115519453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990896,0.0004756975,0.000034803925,0.00007248315,0.00015479303,0.000091029346,0.000013996817,0.0000012883803,0.00006629348],"genre_scores_gemma":[0.99782467,0.00031550397,0.001762542,0.000028972669,0.00004021612,0.0000026563778,0.000011796724,0.0000071498293,0.0000064949936],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990721,0.000091370166,0.00048122497,0.00015092641,0.000045942346,0.00015845397],"domain_scores_gemma":[0.9992081,0.00001705258,0.00044016237,0.0001582438,0.00012600682,0.00005043034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012184332,0.0001117309,0.0003239905,0.00014271024,0.00001537849,0.0000037013594,0.0002108066,0.00024285477,0.000010103622],"category_scores_gemma":[0.00008317928,0.0000941636,0.0000826589,0.000082679064,0.00037797977,0.000005691969,0.00007706514,0.0001225361,1.6651126e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010363814,0.000060831153,0.05403751,0.000046826903,0.000072497365,0.000011868266,0.00036871101,0.0000012624221,0.94461423,0.0000352025,0.000002328277,0.0006450717],"study_design_scores_gemma":[0.00070086186,0.0024288034,0.5615831,0.000044648485,0.000044417135,0.00014220609,0.00024694126,0.0000017048222,0.4344161,0.00020449303,0.00008860939,0.00009811728],"about_ca_topic_score_codex":0.00009661577,"about_ca_topic_score_gemma":0.00011742455,"teacher_disagreement_score":0.5101982,"about_ca_system_score_codex":0.000009339677,"about_ca_system_score_gemma":0.00007616847,"threshold_uncertainty_score":0.38398802},"labels":[],"label_agreement":null},{"id":"W2116210091","doi":"10.1107/s1744309109032321","title":"Purification and crystallization of a putative transcriptional regulator of the benzoate oxidation pathway in<i>Burkholderia xenovorans</i>LB400","year":2009,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology and Crystallization Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Burkholderia; Transcriptional regulation; Escherichia coli; Biology; Regulator; Tetramer; DNA; Enzyme; Biochemistry; Genetics; Gene; Transcription factor; Bacteria","score_opus":0.010249495607165305,"score_gpt":0.23985917136120463,"score_spread":0.22960967575403932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116210091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940732,0.0006916124,0.0028227032,0.0016986226,0.00009254627,0.0004421729,0.00009825473,0.000016294034,0.000064589265],"genre_scores_gemma":[0.99582684,0.0018267044,0.0013615305,0.00009055832,0.00003088647,0.000020105417,0.0008202579,0.000010626653,0.000012461104],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99862796,0.00026629792,0.00053447235,0.00032664355,0.00009003707,0.00015459022],"domain_scores_gemma":[0.99872965,0.00002927842,0.00039863872,0.0005539775,0.00024811682,0.000040342627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020217021,0.00018237138,0.00021831524,0.00019956773,0.00022158293,0.00001915338,0.000317393,0.00041098474,0.00000665926],"category_scores_gemma":[0.00006933477,0.00015511364,0.000071482915,0.0005457759,0.00070540106,0.000031199274,0.00010304906,0.0001592018,1.1883615e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000826494,0.000048868027,0.004492237,0.000019346748,0.000034117264,2.7059654e-8,0.00018538466,0.000040968913,0.9821913,0.011634333,0.000003751145,0.0012669938],"study_design_scores_gemma":[0.0018644681,0.0009754456,0.6710553,0.00007181625,0.00008160828,0.000046018664,0.00046302634,0.0009819552,0.28562927,0.025616204,0.012710821,0.0005040775],"about_ca_topic_score_codex":0.000031178137,"about_ca_topic_score_gemma":0.00017931881,"teacher_disagreement_score":0.69656205,"about_ca_system_score_codex":0.000011899135,"about_ca_system_score_gemma":0.000054386743,"threshold_uncertainty_score":0.63253504},"labels":[],"label_agreement":null},{"id":"W2116874432","doi":"10.1016/j.bbamem.2012.06.007","title":"Membrane transport metabolons","year":2012,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Transporter; Antiporter; Efflux; Flux (metallurgy); Membrane transport protein; Enzyme; Biology; Biochemistry; Membrane transport; Membrane; Chemistry; Gene","score_opus":0.03348500372486088,"score_gpt":0.2945132053399874,"score_spread":0.2610282016151265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116874432","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04694861,0.9475736,0.0000083051,0.00038566094,0.0015292744,0.0013086922,0.0015347707,0.00018693607,0.0005241295],"genre_scores_gemma":[0.025378542,0.96474534,0.0003891787,0.00021330951,0.0019955817,0.00021977218,0.0058436682,0.00031688332,0.0008977457],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9949752,0.00034446878,0.0012773444,0.0017057897,0.00039993072,0.0012972588],"domain_scores_gemma":[0.9966185,0.000049006787,0.0008335974,0.0019646739,0.00012177376,0.00041245192],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0004093597,0.001603649,0.0026353882,0.00050033414,0.00021240153,0.00010090392,0.0016625982,0.0025526858,0.00010126982],"category_scores_gemma":[0.000030888772,0.0013175306,0.0017179983,0.00089451356,0.0006743261,0.000017559201,0.0004948118,0.0006867784,0.00022876706],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072707255,0.00043276075,1.5912929e-7,0.0042533167,0.0011923944,0.000008927397,0.000032440617,1.04163725e-7,0.91564816,0.000104512554,0.00037921293,0.07787529],"study_design_scores_gemma":[0.00029392817,0.00021329983,0.0000119859615,0.00044323085,0.0017363325,0.00008948702,0.0000070743886,3.3478986e-7,0.32406127,0.0000070227557,0.6720227,0.0011133584],"about_ca_topic_score_codex":0.00003393967,"about_ca_topic_score_gemma":0.000020821371,"teacher_disagreement_score":0.67164344,"about_ca_system_score_codex":0.00003758908,"about_ca_system_score_gemma":0.0004703439,"threshold_uncertainty_score":0.9996711},"labels":[],"label_agreement":null},{"id":"W2117084146","doi":"10.1016/j.jmb.2008.03.048","title":"Phage Display and Crystallographic Analysis Reveals Potential Substrate/Binding Site Interactions in the Protein Secretion Chaperone CsaA from Agrobacterium tumefaciens","year":2008,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Chaperone (clinical); Agrobacterium tumefaciens; Peptide; Binding site; Chemistry; Protein structure; Alanine; Phage display; Stereochemistry; Biophysics; Biochemistry; Biology; Amino acid; Transgene; Gene","score_opus":0.008159731329014645,"score_gpt":0.2385738630609219,"score_spread":0.23041413173190725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117084146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939251,0.0007393318,0.0043800683,0.00056339597,0.00013967158,0.00016387364,0.00007061482,0.0000037903908,0.000014168077],"genre_scores_gemma":[0.9979557,0.0005935184,0.0008776461,0.00013782387,0.00014355894,0.000007552683,0.0002522957,0.000011650102,0.000020255866],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99856335,0.00029779307,0.00047835757,0.0002965501,0.00010276706,0.00026117638],"domain_scores_gemma":[0.99920547,0.000013476974,0.00036492085,0.00025378514,0.000097766366,0.00006459836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034740445,0.0001831531,0.0003227376,0.00030904848,0.00009761839,0.00002875673,0.00026376522,0.00025609237,0.000018483477],"category_scores_gemma":[0.00005262624,0.00013347049,0.00022253359,0.00036638902,0.00021154738,0.000009151939,0.00009396832,0.00030110555,0.0000014115172],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011612393,0.00007428696,0.0074133906,0.0000032092462,0.00028142944,0.0001128504,0.000079603786,0.000029489327,0.99169785,0.00003615499,0.000012437985,0.00014319694],"study_design_scores_gemma":[0.002437828,0.0021999474,0.32425082,0.000053369426,0.00073506974,0.0020047294,0.00032420477,0.00018873581,0.6624671,0.0006415465,0.004011426,0.00068521424],"about_ca_topic_score_codex":0.000051952895,"about_ca_topic_score_gemma":0.00012640971,"teacher_disagreement_score":0.32923073,"about_ca_system_score_codex":0.000012265829,"about_ca_system_score_gemma":0.000036328674,"threshold_uncertainty_score":0.54427683},"labels":[],"label_agreement":null},{"id":"W2117216932","doi":"10.1128/jb.182.2.498-503.2000","title":"The N-Terminal Region of the <i>Escherichia coli</i> WecA (Rfe) Protein, Containing Three Predicted Transmembrane Helices, Is Required for Function but Not for Membrane Insertion","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Biology; Escherichia coli; Transmembrane protein; Escherichia coli Proteins; Transmembrane domain; Membrane protein; Terminal (telecommunication); Function (biology); Membrane; Bacterial protein; Membrane transport protein; Biophysics; Transport protein; Biochemistry; Cell biology; Bacteria; Genetics; Gene","score_opus":0.01400924429233067,"score_gpt":0.22435581972057372,"score_spread":0.21034657542824306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117216932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936618,0.00031917912,0.0020115124,0.0024845304,0.00055086357,0.00086870795,0.00007290385,0.0000064730325,0.000024013087],"genre_scores_gemma":[0.9974635,0.0005614223,0.0004806832,0.00053582777,0.0005773074,0.00007091081,0.000032681855,0.000026054371,0.00025159368],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985104,0.00011912733,0.0007350939,0.00023445561,0.00010486017,0.00029605845],"domain_scores_gemma":[0.9985414,0.0000522442,0.00068464456,0.00032138376,0.00034794796,0.000052377716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044279557,0.00019090484,0.0003538842,0.00003946992,0.00021264193,0.00002316411,0.0004114242,0.0004839117,0.000013653803],"category_scores_gemma":[0.00009197533,0.00011884143,0.0002998741,0.00008995424,0.00026788143,0.0000130270355,0.000033526027,0.00018306723,3.5381981e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011885985,0.00004514845,0.00005666654,0.000057587007,0.00015592935,0.0000015986755,0.0000321328,0.000009640422,0.97349304,0.00005419614,0.00014853729,0.014059553],"study_design_scores_gemma":[0.00281694,0.006390493,0.0048805694,0.000076063734,0.00015496887,0.00030245673,0.000039242812,0.00013472876,0.87963194,0.00023792198,0.10516974,0.00016495456],"about_ca_topic_score_codex":0.000012720162,"about_ca_topic_score_gemma":0.00006821248,"teacher_disagreement_score":0.1050212,"about_ca_system_score_codex":0.000018349785,"about_ca_system_score_gemma":0.0001775181,"threshold_uncertainty_score":0.48462132},"labels":[],"label_agreement":null},{"id":"W2117231907","doi":"10.1139/cjm-2015-0415","title":"Filament formation of <i>Salmonella</i> Paratyphi A accompanied by FtsZ assembly impairment and low level ppGpp","year":2015,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Microbiology; Protein filament; Salmonella; FtsZ; Biology; Enterobacteriaceae; Chemistry; Bacteria; Bacterial protein; Escherichia coli; Biochemistry; Genetics; Gene","score_opus":0.015010321283646915,"score_gpt":0.21162778027612128,"score_spread":0.19661745899247438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117231907","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99613696,0.0024255423,0.0002519462,0.00056651316,0.0002827113,0.00010078967,0.00018159265,0.0000013334655,0.00005259602],"genre_scores_gemma":[0.99881405,0.00019739117,0.0004649487,0.00026656353,0.00008217353,0.0000014249083,0.00010339073,0.000009815212,0.00006024187],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914455,0.000062557345,0.00037634475,0.00013429149,0.00003010725,0.00025212558],"domain_scores_gemma":[0.99910384,0.000005774305,0.00028757998,0.0001420135,0.00019151106,0.0002692582],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024463783,0.00012775366,0.00023982732,0.00009870641,0.000032851483,0.000014070936,0.00019631832,0.00028662488,0.000007961562],"category_scores_gemma":[0.000035262794,0.000112515525,0.000056707613,0.00005323882,0.00015425825,0.0000049139553,0.000040657887,0.00010566018,0.0000024819624],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007028809,0.000022524124,0.00037699423,0.000009770773,0.00003850544,0.000005636456,0.0000625898,0.000009359843,0.96794134,0.00000978265,0.030529955,0.0009232349],"study_design_scores_gemma":[0.0010589173,0.0013493133,0.00041173032,0.000020234138,0.000021881802,0.00067210424,0.00014424641,0.0000070773094,0.9103539,0.000050796756,0.08576874,0.00014107677],"about_ca_topic_score_codex":0.00030196641,"about_ca_topic_score_gemma":0.0020307174,"teacher_disagreement_score":0.05758748,"about_ca_system_score_codex":0.000043761975,"about_ca_system_score_gemma":0.0004912492,"threshold_uncertainty_score":0.458825},"labels":[],"label_agreement":null},{"id":"W2117470119","doi":"10.1099/mic.0.28428-0","title":"Regulation of Serratia marcescens ompF and ompC porin genes in response to osmotic stress, salicylate, temperature and pH","year":2006,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Porin; Serratia marcescens; Gene expression; Biology; Gene; Osmotic shock; Biochemistry; Bacterial outer membrane; Escherichia coli; Membrane permeability; Microbiology; Transcription (linguistics); Osmotic concentration; Chemistry; Membrane","score_opus":0.002737251374162224,"score_gpt":0.1912970133629152,"score_spread":0.188559761988753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117470119","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99752605,0.0012018369,0.000009341113,0.00086597813,0.00008401092,0.00018972265,0.00009786056,0.000006947064,0.000018277946],"genre_scores_gemma":[0.99847484,0.00013551289,0.0007160111,0.000093610695,0.0000741437,0.0000053466656,0.00020778798,0.000012646481,0.00028007504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908954,0.00011012569,0.00023306937,0.0003478502,0.000017286056,0.0002021292],"domain_scores_gemma":[0.99965113,0.000010606471,0.000064872416,0.00020013105,0.000042867843,0.000030382256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014235094,0.0001421766,0.00019518594,0.000104549494,0.000029864248,0.000010652152,0.00008725585,0.00042177393,0.0000070027],"category_scores_gemma":[0.00002173065,0.0001317231,0.000020732756,0.00010198995,0.00015423942,0.0000018955628,0.00014189047,0.000073696705,0.0000010726826],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039854247,0.000031505202,0.010156314,0.000018821605,0.0000102824415,0.0000021350966,0.000020258769,0.000023339535,0.98854214,0.00004221864,0.00028187313,0.00047257182],"study_design_scores_gemma":[0.0004481525,0.00033188984,0.17628591,0.000015808706,0.00000611937,0.000053740303,0.000018961982,0.0000036538343,0.8149082,0.00006343888,0.0077289906,0.00013511642],"about_ca_topic_score_codex":0.00008560723,"about_ca_topic_score_gemma":0.0007097664,"teacher_disagreement_score":0.17363392,"about_ca_system_score_codex":0.0000074995255,"about_ca_system_score_gemma":0.000028068242,"threshold_uncertainty_score":0.5371513},"labels":[],"label_agreement":null},{"id":"W2117506315","doi":"10.1128/jb.182.5.1410-1414.2000","title":"Influence of Mutations in the <i>mexR</i> Repressor Gene on Expression of the MexA-MexB-OprM Multidrug Efflux System of <i>Pseudomonas aeruginosa</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Biology; Pseudomonas aeruginosa; Efflux; Repressor; Mutant; Gene; Mutation; Multiple drug resistance; Genetics; Regulator gene; Pseudomonadales; Regulation of gene expression; Microbiology; Gene expression; Drug resistance; Bacteria","score_opus":0.005782569967241015,"score_gpt":0.22158662409170218,"score_spread":0.21580405412446116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117506315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989297,0.00025457534,0.000009046795,0.00026311376,0.00015864719,0.00020082021,0.00005039796,0.0000019750412,0.00013176913],"genre_scores_gemma":[0.99899757,0.00037514282,0.00036554312,0.00011393183,0.00009986417,0.000006096219,0.000008734107,0.000011196322,0.000021930828],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981793,0.00036799462,0.00091805746,0.00019005811,0.00016368057,0.00018088995],"domain_scores_gemma":[0.9982186,0.00008420483,0.0009153988,0.0005589775,0.00019131936,0.000031503016],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004919026,0.00015535994,0.00042577542,0.00008312871,0.000039362436,0.00000452567,0.00069676986,0.00031972234,0.000011203933],"category_scores_gemma":[0.0001293676,0.00008991587,0.00018909466,0.00015981629,0.00035377927,0.000006349389,0.000098774704,0.00023665825,9.472924e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037765654,0.00014027672,0.0026424131,0.000043258085,0.000034846544,0.0000037568757,0.00016433478,0.002399628,0.9934202,0.000035836707,0.000057865673,0.0006799242],"study_design_scores_gemma":[0.0007908273,0.0007525905,0.064043485,0.00015494786,0.000033398814,0.00018810487,0.00010782428,0.000010684381,0.9322596,0.00002497461,0.0015537256,0.00007983614],"about_ca_topic_score_codex":0.000039190814,"about_ca_topic_score_gemma":0.000011855618,"teacher_disagreement_score":0.061401073,"about_ca_system_score_codex":0.000013422485,"about_ca_system_score_gemma":0.00009565354,"threshold_uncertainty_score":0.36666626},"labels":[],"label_agreement":null},{"id":"W2117750363","doi":"10.1046/j.1365-2958.2002.03168.x","title":"Conservation of dynamic localization among MinD and MinE orthologues: oscillation of <i>Neisseria gonorrhoeae</i> proteins in <i>Escherichia coli</i>","year":2002,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Neisseria gonorrhoeae; Biology; Escherichia coli; Oscillation (cell signaling); Microbiology; Bacterial protein; Bacteria; Genetics; Gene","score_opus":0.005015150905196826,"score_gpt":0.19371820474309176,"score_spread":0.18870305383789493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117750363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961273,0.0012103936,0.0019511872,0.00014374606,0.00006802055,0.000388426,0.000045313132,0.0000050748213,0.000060552495],"genre_scores_gemma":[0.9974613,0.00037221354,0.001613949,0.0001367873,0.000009404246,0.000014599749,0.00033740673,0.000017058408,0.00003725872],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891686,0.00011391217,0.00041873407,0.00034225063,0.00001861376,0.00018960611],"domain_scores_gemma":[0.99937254,0.000006971412,0.00024369301,0.00025202404,0.000097933276,0.000026838758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001280792,0.00015984365,0.000263132,0.000112980924,0.000020632986,0.000004784313,0.00011600353,0.0004618417,0.000015644251],"category_scores_gemma":[0.00005447437,0.00016529109,0.00004654458,0.0002205236,0.00035104845,0.0000038654744,0.00009002058,0.00007665575,0.0000012674624],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055902357,0.000075794625,0.014037059,0.00004130923,0.000021998445,0.0000011191445,0.000039757742,0.00006000282,0.9848426,0.000024459376,0.000026673368,0.0007733173],"study_design_scores_gemma":[0.00081359874,0.000581889,0.009407939,0.000031445485,0.000021258922,0.000021505293,0.000027490994,0.0008436385,0.98279035,0.0000306,0.0052395575,0.00019074984],"about_ca_topic_score_codex":0.00006445801,"about_ca_topic_score_gemma":0.0003933992,"teacher_disagreement_score":0.005212884,"about_ca_system_score_codex":0.000010262259,"about_ca_system_score_gemma":0.000019384173,"threshold_uncertainty_score":0.6740375},"labels":[],"label_agreement":null},{"id":"W2118008421","doi":"10.1128/jb.01546-07","title":"Functional Characterization of MigA and WapR: Putative Rhamnosyltransferases Involved in Outer Core Oligosaccharide Biosynthesis of<i>Pseudomonas aeruginosa</i>","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Mutant; Complementation; Biology; Molecular biology; Heptose; Biosynthesis; Lipopolysaccharide; Microbiology; Chemistry; Gene; Biochemistry; Immunology","score_opus":0.018934773715307735,"score_gpt":0.220344501115824,"score_spread":0.20140972740051624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118008421","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987006,0.00022917586,0.00032267932,0.00029051423,0.0002582025,0.000098026896,0.00008975327,0.000002224186,0.0000088201405],"genre_scores_gemma":[0.9965002,0.0025036936,0.00064608356,0.000104490304,0.00013862016,0.0000029285993,0.00007926862,0.000012743129,0.000012006733],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877524,0.00008911285,0.0006894342,0.00019170927,0.00008700798,0.00016748157],"domain_scores_gemma":[0.999075,0.000038811024,0.00048034862,0.00013650046,0.0002156847,0.00005364923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018027172,0.00015941638,0.00046940072,0.00020746798,0.000027198555,0.0000034837688,0.00014069615,0.00032692665,0.000022506727],"category_scores_gemma":[0.00008306272,0.00013637867,0.00011138793,0.00010905043,0.00036839192,0.000011167711,0.000061383435,0.00014025011,5.146983e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006325881,0.0001058969,0.03839075,0.000025618105,0.00008819234,0.000016903743,0.000096334225,0.0000050128783,0.9595658,0.000028632978,0.00002165499,0.0010225814],"study_design_scores_gemma":[0.0006880083,0.00082030834,0.25210524,0.000028239152,0.000022132037,0.0002778385,0.00003555948,0.00000582909,0.74532235,0.000051334242,0.0005432982,0.000099848716],"about_ca_topic_score_codex":0.000016649532,"about_ca_topic_score_gemma":0.000016539261,"teacher_disagreement_score":0.21424349,"about_ca_system_score_codex":0.000010591368,"about_ca_system_score_gemma":0.00011904076,"threshold_uncertainty_score":0.5561361},"labels":[],"label_agreement":null},{"id":"W2118333970","doi":"10.1128/jb.182.11.3037-3044.2000","title":"mRNA Composition and Control of Bacterial Gene Expression","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; lac operon; Messenger RNA; Stringent response; Ribosome; Gene expression; Translation (biology); Exponential growth; Protein biosynthesis; Gene; Molecular biology; Regulation of gene expression; Ribosomal binding site; Escherichia coli; RNA; Biochemistry; Cell biology","score_opus":0.004668728339715152,"score_gpt":0.21142603660445533,"score_spread":0.20675730826474017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118333970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984662,0.000492315,0.00040670525,0.00018198203,0.0003035789,0.00006673067,0.000028570357,0.0000023655375,0.000051530427],"genre_scores_gemma":[0.99656177,0.0010558944,0.0017491423,0.00009418476,0.00047349572,0.0000011694591,0.000029455965,0.000010133092,0.000024739838],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912643,0.00010519066,0.00043305993,0.00013913418,0.000054358734,0.00014184463],"domain_scores_gemma":[0.9993744,0.000011836537,0.00030453983,0.00014727599,0.00009999068,0.00006196095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016520871,0.000113343835,0.0003068125,0.000058676127,0.00002965142,0.00000902971,0.0001417141,0.00030077403,0.0002047327],"category_scores_gemma":[0.000016680695,0.00009185902,0.000081703794,0.000030384188,0.00016181121,0.0000049216533,0.000038103815,0.000101894904,0.0000016507919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001244866,0.000053812855,0.0006853146,0.0000071621307,0.000048771282,0.000004904062,0.000013474781,0.0000066442217,0.99062175,0.000006770618,0.00008936722,0.0072171646],"study_design_scores_gemma":[0.001635213,0.0015864008,0.010614359,0.000018161823,0.00003083122,0.0005095899,0.000006354121,0.0000046227046,0.9706759,0.00004718226,0.0147725055,0.00009888206],"about_ca_topic_score_codex":0.0000023284313,"about_ca_topic_score_gemma":0.0000010163975,"teacher_disagreement_score":0.01994585,"about_ca_system_score_codex":0.000005238947,"about_ca_system_score_gemma":0.00003845311,"threshold_uncertainty_score":0.37459022},"labels":[],"label_agreement":null},{"id":"W2118342782","doi":"10.1111/j.1574-6976.2007.00092.x","title":"Sigma factors in<i>Pseudomonas aeruginosa</i>","year":2008,"lang":"yi","type":"review","venue":"FEMS Microbiology Reviews","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":305,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Sigma factor; rpoS; rpoN; Biology; Pseudomonas aeruginosa; RNA polymerase; Genetics; Sigma; Gene; Computational biology; Microbiology; Promoter; Escherichia coli; Gene expression; Bacteria","score_opus":0.029166335469984504,"score_gpt":0.2726054588182346,"score_spread":0.2434391233482501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118342782","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.018596338,0.9740005,0.000018932118,0.0001428145,0.0027345954,0.003253923,0.0006615648,0.00003741128,0.0005539091],"genre_scores_gemma":[0.001465445,0.9875116,0.00042276533,0.00054123945,0.0009865187,0.00025953658,0.0068737967,0.00019188448,0.0017472339],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9905911,0.0015646232,0.0032358791,0.0027144945,0.000080044476,0.0018138643],"domain_scores_gemma":[0.99539024,0.0000888211,0.0017825516,0.0023171604,0.00013205009,0.00028919493],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.00066874875,0.002189533,0.0056807646,0.00045472788,0.00023899264,0.00005295566,0.002058583,0.0060486556,0.000287907],"category_scores_gemma":[0.00034826074,0.0017477545,0.0020751976,0.0007887023,0.0011012359,0.0000074285144,0.00122844,0.001732045,0.00097539515],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000677467,0.000570623,0.00079671515,0.0036453116,0.0005342475,0.00008627517,0.000087638,9.280203e-7,0.62136906,0.000032409975,0.03837669,0.3344324],"study_design_scores_gemma":[0.0006973637,0.00065910124,0.000045022174,0.0025700107,0.0002468032,0.0011758314,0.0000123436475,2.1285987e-7,0.011285189,0.000006103842,0.9815834,0.0017185882],"about_ca_topic_score_codex":0.000069466725,"about_ca_topic_score_gemma":0.00024281559,"teacher_disagreement_score":0.9432067,"about_ca_system_score_codex":0.00017530707,"about_ca_system_score_gemma":0.0006742983,"threshold_uncertainty_score":0.9998025},"labels":[],"label_agreement":null},{"id":"W2119090297","doi":"10.1093/nar/gkv584","title":"A<i>cis</i>-encoded sRNA, Hfq and mRNA secondary structure act independently to suppress IS<i>200</i>transposition","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Transposase; Genetics; Transfer RNA; RNA; Transposition (logic); Open reading frame; Transposable element; Gene; Genome; Peptide sequence","score_opus":0.024679634443904683,"score_gpt":0.3043421194953194,"score_spread":0.2796624850514147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119090297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99530536,0.00051385467,0.000068874026,0.0020072798,0.00022240511,0.00039068732,0.0003283887,0.000023945971,0.0011392271],"genre_scores_gemma":[0.9967972,0.00022895123,0.0010790409,0.0007276802,0.0003556256,0.000018019955,0.00017752069,0.0000427348,0.0005732287],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978416,0.0001628901,0.00023381734,0.0006608428,0.00048098707,0.0006198529],"domain_scores_gemma":[0.99862325,0.000012393082,0.000039360984,0.0005854919,0.00034627336,0.0003932289],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048643825,0.00021839076,0.00021204179,0.00017854136,0.00016708588,0.00012879245,0.0005288249,0.0006731396,0.00016239929],"category_scores_gemma":[0.00007405727,0.00020315277,0.000052873947,0.00026573805,0.000251802,0.00001147558,0.00048647882,0.00058441184,0.00003608478],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004406568,0.000041629028,0.0013457589,0.000023020873,0.00004067802,0.000012745602,0.0002727624,0.0000035464468,0.980538,0.00004360676,0.009898291,0.0073392983],"study_design_scores_gemma":[0.0011350905,0.0013928598,0.0064900964,0.000016927863,0.000011699845,0.0000657555,0.000249198,0.000025635205,0.87590206,0.00076806464,0.113651685,0.00029090856],"about_ca_topic_score_codex":0.00008508367,"about_ca_topic_score_gemma":0.00013665858,"teacher_disagreement_score":0.104635924,"about_ca_system_score_codex":0.000038555547,"about_ca_system_score_gemma":0.00021508682,"threshold_uncertainty_score":0.8284329},"labels":[],"label_agreement":null},{"id":"W2119462786","doi":"10.1128/jb.05909-11","title":"The Transcript from the σ <sup>28</sup> -Dependent Promoter Is Translationally Inert in the Expression of the σ <sup>28</sup> -Encoding Gene <i>fliA</i> in the <i>fliAZ</i> Operon of Salmonella enterica Serovar Typhimurium","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Biology; Operon; Promoter; Transcription (linguistics); Genetics; RNA polymerase; Gene; Sigma factor; Gene expression; Molecular biology; RNA","score_opus":0.01761988175667289,"score_gpt":0.2196564514398119,"score_spread":0.20203656968313902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119462786","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918362,0.0015220952,0.00012315334,0.005498535,0.00024951357,0.00047685223,0.000092626455,0.0000026133066,0.0001983977],"genre_scores_gemma":[0.99629617,0.0015763716,0.00033900246,0.0013715319,0.00031456337,0.000023105198,0.000020052426,0.000025258892,0.000033940116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967897,0.0010475902,0.0011227237,0.00033205582,0.00031173573,0.00039617714],"domain_scores_gemma":[0.9982153,0.00015737982,0.0006331285,0.0008019011,0.00015205523,0.000040202336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013999294,0.00030130657,0.00044906314,0.000065255575,0.00015220922,0.000033581327,0.0019877169,0.00045063318,0.000049530863],"category_scores_gemma":[0.00006936329,0.00012757708,0.0003167757,0.00020858225,0.0004706365,0.000016866725,0.0001877106,0.0006469468,0.000001419289],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008040457,0.0002505735,0.004139355,0.0000127310705,0.00010022023,0.0000092913015,0.0061974516,0.000114662646,0.98666936,0.000038424387,0.0004571217,0.0012067563],"study_design_scores_gemma":[0.0028130938,0.0021704338,0.07189354,0.00020826067,0.000186551,0.0004313862,0.003899781,0.00019675543,0.880277,0.0007427195,0.036777638,0.00040287685],"about_ca_topic_score_codex":0.00018804375,"about_ca_topic_score_gemma":0.00012327124,"teacher_disagreement_score":0.106392406,"about_ca_system_score_codex":0.000019262285,"about_ca_system_score_gemma":0.00014055372,"threshold_uncertainty_score":0.52024424},"labels":[],"label_agreement":null},{"id":"W2119534200","doi":"10.1371/journal.pone.0038426","title":"Ribonuclease E Modulation of the Bacterial SOS Response","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Institute of Genetics; National Institute of General Medical Sciences; National Institutes of Health","keywords":"SOS response; Repressor lexA; RNase P; Endoribonuclease; Biology; RNase MRP; Cell biology; Ribonuclease; DNA repair; DNA damage; RNase H; Genetics; Molecular biology; DNA; RNA; Gene; Transcription factor; Repressor","score_opus":0.02130248078981527,"score_gpt":0.2089142096483301,"score_spread":0.18761172885851482,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119534200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99914914,0.00009552459,0.000011785957,0.00034190516,0.00013912666,0.00013864957,0.000025929316,0.0000066907437,0.00009126566],"genre_scores_gemma":[0.9986409,0.00003267159,0.0006957388,0.00006118212,0.00034231314,0.0000062580525,0.000021325925,0.000011551767,0.00018803508],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994482,0.00008005594,0.00012671528,0.000105399056,0.00008765484,0.00015201166],"domain_scores_gemma":[0.99949974,0.000005847342,0.00007456645,0.00033703275,0.00004584259,0.000036995687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016011095,0.000069844406,0.000088108674,0.000017454186,0.000035530742,0.0000051346824,0.00014009989,0.00017209358,0.00004536238],"category_scores_gemma":[0.00012866774,0.00005321262,0.000044711847,0.00005297933,0.00007357031,0.0000019487063,0.00013415751,0.00004799843,0.000008121379],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004599395,0.0003388998,0.002728712,0.000008524461,0.000046461224,4.1061703e-8,0.000016501586,6.732663e-7,0.99584407,0.000032860473,0.000071454226,0.00045184506],"study_design_scores_gemma":[0.00023129843,0.00013042317,0.0669644,0.000009851744,0.000028924587,0.0000010057331,0.0000048000024,0.000012825885,0.92925256,0.000018142156,0.0032794834,0.00006629805],"about_ca_topic_score_codex":0.000003356994,"about_ca_topic_score_gemma":0.0000022129623,"teacher_disagreement_score":0.066591546,"about_ca_system_score_codex":0.0000050409717,"about_ca_system_score_gemma":0.00002378608,"threshold_uncertainty_score":0.21699478},"labels":[],"label_agreement":null},{"id":"W2120470565","doi":"10.1128/aac.49.10.4375-4378.2005","title":"Interaction of the MexA and MexB Components of the MexAB-OprM Multidrug Efflux System of <i>Pseudomonas aeruginosa</i> : Identification of MexA Extragenic Suppressors of a T578I Mutation in MexB","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Efflux; Pseudomonas aeruginosa; Mutation; Biology; Genetics; Bacteria; Gene","score_opus":0.006694037345538294,"score_gpt":0.2224999034271124,"score_spread":0.2158058660815741,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120470565","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99898183,0.000102841,0.000042345993,0.00028628853,0.00014508628,0.00034676012,0.000074910065,0.0000022592274,0.000017697135],"genre_scores_gemma":[0.9991101,0.0006010097,0.00014396026,0.00005309469,0.000022555814,0.0000031966586,0.00002383171,0.000012748771,0.000029520796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988564,0.000090245805,0.0006235799,0.00020854182,0.000113324815,0.00010785544],"domain_scores_gemma":[0.9988882,0.000013900866,0.00067806966,0.0003007368,0.00010318622,0.000015918871],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019277137,0.00013245297,0.0002870524,0.000057145364,0.0000295262,0.0000048097577,0.00022792378,0.0001766449,0.0000045695547],"category_scores_gemma":[0.0000135852715,0.00009325654,0.00010369136,0.00012644706,0.00025192875,0.00000864258,0.000105572406,0.000067239795,8.770426e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016372147,0.00017864953,0.0075809457,0.00021058618,0.00008530098,7.612e-8,0.00036727267,0.000065715685,0.9892939,0.000024555302,0.00007434446,0.0019549553],"study_design_scores_gemma":[0.0011333323,0.00007194227,0.07457596,0.00013059955,0.000037789123,0.000008819414,0.00010982562,0.0002684088,0.92321277,0.000005749157,0.00037276733,0.00007202885],"about_ca_topic_score_codex":0.00023095655,"about_ca_topic_score_gemma":0.00008019313,"teacher_disagreement_score":0.06699502,"about_ca_system_score_codex":0.0000101133155,"about_ca_system_score_gemma":0.000021917851,"threshold_uncertainty_score":0.3802891},"labels":[],"label_agreement":null},{"id":"W2120635362","doi":"10.1111/j.1365-2958.2006.05169.x","title":"Cell wall assembly in <i>Bacillus subtilis</i>: how spirals and spaces challenge paradigms","year":2006,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Peptidoglycan; Bacillus subtilis; Biology; Teichoic acid; Periplasmic space; Cell wall; Compartment (ship); Bacterial cell structure; Lysin; Function (biology); Cell biology; Cell envelope; Computational biology; Biochemistry; Bacteria; Genetics; Escherichia coli; Gene","score_opus":0.014091505993939326,"score_gpt":0.24199410218942233,"score_spread":0.227902596195483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120635362","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.022723913,0.9751036,0.00003858728,0.0003042896,0.00028125945,0.0008227766,0.00019737912,0.000027696116,0.0005004756],"genre_scores_gemma":[0.009053127,0.98764515,0.00032922806,0.0001844901,0.00016139763,0.00009699891,0.0018686252,0.00012098552,0.00053997134],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99668044,0.0003902535,0.0006147853,0.0014019597,0.00005888345,0.0008536499],"domain_scores_gemma":[0.99857986,0.000021890432,0.00040612047,0.0008367728,0.00005103554,0.00010430211],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00025184941,0.0008711977,0.0016854425,0.00029112538,0.000056291086,0.00008007244,0.0006245707,0.0027393636,0.0000072756843],"category_scores_gemma":[0.000028011245,0.00078153034,0.00040587128,0.0002146918,0.00034564268,0.0000032628964,0.00055731187,0.00052729563,0.000020429809],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002241097,0.00019410095,0.000012940904,0.002489569,0.00015792556,0.00017152629,0.000009571631,0.0000012313317,0.90243816,0.00013650596,0.0019462778,0.09241978],"study_design_scores_gemma":[0.00051621004,0.00051223394,0.0000028575464,0.00031824096,0.00016412431,0.00024880152,0.000004621218,5.9360485e-7,0.025409581,0.000021798403,0.9720042,0.0007967418],"about_ca_topic_score_codex":0.000059849506,"about_ca_topic_score_gemma":0.00017194709,"teacher_disagreement_score":0.9700579,"about_ca_system_score_codex":0.00004150204,"about_ca_system_score_gemma":0.00016015623,"threshold_uncertainty_score":0.99946356},"labels":[],"label_agreement":null},{"id":"W2120771328","doi":"10.1016/j.bmc.2006.11.015","title":"Parallel solid synthesis of inhibitors of the essential cell division FtsZ enzyme as a new potential class of antibacterials","year":2006,"lang":"en","type":"article","venue":"Bioorganic & Medicinal Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"National Research Council Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"FtsZ; GTPase; Chemistry; Cell division; GTP'; Bacterial cell structure; Enzyme; Biochemistry; Staphylococcus aureus; Bacteria; Antibiotics; Cell; Biology; Genetics","score_opus":0.00335068192841032,"score_gpt":0.20461555051454053,"score_spread":0.2012648685861302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120771328","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99792194,0.00068385864,0.00015113439,0.0003564621,0.00033213478,0.00013927232,0.000056210756,0.000007754984,0.000351252],"genre_scores_gemma":[0.998503,0.0001940825,0.0001857326,0.000024206884,0.0007019419,0.0000023600865,0.00004967255,0.000025506044,0.00031344444],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99838006,0.000044556946,0.00067614747,0.00034750876,0.0002972166,0.0002545245],"domain_scores_gemma":[0.9986133,0.000017122695,0.00060342177,0.00055638544,0.00012362059,0.00008615884],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017076769,0.00022808347,0.00041497976,0.00002853802,0.00003885225,0.00000634551,0.0005016024,0.00054434605,0.00014046514],"category_scores_gemma":[0.00018401176,0.00017280741,0.0002082624,0.00015067852,0.00040807723,0.0000026895607,0.00030837907,0.000120678895,0.0000016526528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001578188,0.000169609,0.00027338293,0.0001518585,0.0000524383,0.0000019177598,0.000009892786,0.0000062006056,0.99733907,0.000007995734,0.0014992367,0.00033057577],"study_design_scores_gemma":[0.00069732877,0.00017089183,0.0014394613,0.000091283575,0.000121897065,0.000022051097,0.000049883787,0.000004220735,0.9960197,0.000063435575,0.0011604847,0.00015933029],"about_ca_topic_score_codex":0.00022049386,"about_ca_topic_score_gemma":0.0000065551126,"teacher_disagreement_score":0.0013193418,"about_ca_system_score_codex":0.000011623851,"about_ca_system_score_gemma":0.00037886016,"threshold_uncertainty_score":0.7046882},"labels":[],"label_agreement":null},{"id":"W2121005589","doi":"10.1261/rna.034785.112","title":"<i>E. coli</i> 6S RNA release from RNA polymerase requires σ<sup>70</sup> ejection by scrunching and is orchestrated by a conserved RNA hairpin","year":2012,"lang":"en","type":"article","venue":"RNA","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"SFU Community Trust Endowment Fund; Natural Sciences and Engineering Research Council of Canada; Michael Smith Health Research BC","keywords":"Biology; RNA polymerase; RNA; Polymerase; Transcription (linguistics); RNA-dependent RNA polymerase; Molecular biology; Small nuclear RNA; Biophysics; DNA; Biochemistry; Gene","score_opus":0.009626989725013912,"score_gpt":0.22329938815953196,"score_spread":0.21367239843451805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121005589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98859876,0.008264893,0.00024734598,0.0013574662,0.00023952249,0.000257282,0.0005630853,0.000061622835,0.00041001913],"genre_scores_gemma":[0.9940903,0.002292354,0.00030852712,0.001474247,0.00044554408,0.000023184391,0.00070952246,0.000052277286,0.0006040501],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99818563,0.0001331351,0.00038652567,0.0005751824,0.00015163519,0.000567873],"domain_scores_gemma":[0.9989598,0.000023634759,0.00018950408,0.0004728547,0.000066374756,0.0002878669],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00017932475,0.0003490349,0.0003019817,0.000056260655,0.00020942518,0.00009320902,0.00022778667,0.0006933694,0.00008112378],"category_scores_gemma":[0.00007658431,0.00034273832,0.000096709395,0.00014923318,0.00022138757,0.00001991061,0.00016636212,0.00026347587,0.000019013043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022955128,0.00014158263,0.0004291659,0.0000154074,0.000107344684,0.0000032425608,0.00006524702,0.0000013839847,0.9599103,0.000015343145,0.033032436,0.006049024],"study_design_scores_gemma":[0.000964554,0.00032052788,0.0002919142,0.00003336269,0.00006473394,0.00001325084,0.00010356616,0.00016114034,0.9503651,0.000053650172,0.047222078,0.0004060874],"about_ca_topic_score_codex":0.0014789435,"about_ca_topic_score_gemma":0.000035410674,"teacher_disagreement_score":0.014189641,"about_ca_system_score_codex":0.000029144363,"about_ca_system_score_gemma":0.000086878295,"threshold_uncertainty_score":0.9999025},"labels":[],"label_agreement":null},{"id":"W2121278089","doi":"10.1093/dnares/dsp028","title":"Genome-Wide Screening of Genes Whose Enhanced Expression Affects Glycogen Accumulation in Escherichia coli","year":2010,"lang":"en","type":"article","venue":"DNA Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; European Regional Development Fund; Keio University","keywords":"Biology; Glycogen; Gene; Escherichia coli; Phenotype; Gene expression; Plasmid; Genome; Glycogen synthase; Genetics; Biochemistry","score_opus":0.03856990748022368,"score_gpt":0.3422126283332029,"score_spread":0.30364272085297916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121278089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99847174,0.00026041607,0.00045994966,0.0001054543,0.0001012961,0.0003248034,0.000008297772,0.000008570823,0.00025949767],"genre_scores_gemma":[0.9966753,0.00021682066,0.0026591416,0.000015356472,0.00016140094,0.000034358083,0.000085133615,0.000020909449,0.00013157396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987325,0.00013787787,0.0001925102,0.0003536388,0.00021529643,0.0003681964],"domain_scores_gemma":[0.9992418,0.00004107014,0.000065083856,0.00042815105,0.00015422572,0.00006962273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006496694,0.00011303163,0.00015113817,0.00016525084,0.000071475064,0.000022970253,0.00032374312,0.00043107462,0.000042078642],"category_scores_gemma":[0.0002749342,0.00010648933,0.00004529977,0.00028080106,0.00016578211,0.0000044811845,0.0003537884,0.0003215315,0.000006261062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019496433,0.000056160017,0.0043535694,0.000019872581,0.0000088174875,0.000002008219,0.000033426746,0.00002475179,0.9902858,0.000014159189,0.000028247008,0.0049782],"study_design_scores_gemma":[0.00045894354,0.00024007758,0.051569793,0.000014827001,0.0000017584019,6.9780225e-7,0.000038334714,0.00006586042,0.9412819,0.00004986066,0.0061695664,0.000108362015],"about_ca_topic_score_codex":0.00004434027,"about_ca_topic_score_gemma":0.0002314353,"teacher_disagreement_score":0.049003903,"about_ca_system_score_codex":0.00000824091,"about_ca_system_score_gemma":0.000078067795,"threshold_uncertainty_score":0.4342509},"labels":[],"label_agreement":null},{"id":"W2121458311","doi":"10.1128/jb.185.23.6764-6772.2003","title":"Phosphorylation of <i>Streptococcus salivarius</i> Lactose Permease (LacS) by HPr(His∼P) and HPr(Ser-P)(His∼P) and Effects on Growth","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Streptococcus salivarius; PEP group translocation; Lactose; Biology; Galactose; Biochemistry; Phosphorylation; Mutant; Microbiology; Molecular biology; Bacteria; Streptococcus; Gene; Genetics","score_opus":0.003828146962033698,"score_gpt":0.20444796756619524,"score_spread":0.20061982060416153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121458311","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99705225,0.001788182,0.00011295119,0.0003114822,0.0003505033,0.0001737412,0.000027697544,0.0000047985495,0.00017836888],"genre_scores_gemma":[0.9971601,0.0018277371,0.00039090292,0.00037100798,0.00013974383,0.0000047890653,0.000022216414,0.000023456381,0.00006008636],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99863887,0.00020785893,0.00049382285,0.00030488338,0.00009494544,0.00025963574],"domain_scores_gemma":[0.9989202,0.000059821294,0.00049595133,0.00022282595,0.0001574909,0.00014372473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003197094,0.00023923616,0.00044836735,0.00010374116,0.0000557362,0.000020094252,0.00014634378,0.0005096631,0.000024492689],"category_scores_gemma":[0.00025550867,0.00020123516,0.00009491079,0.00007419569,0.0002329542,0.000009170595,0.000076562275,0.00023465854,0.000001472334],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039933936,0.00010037067,0.009667172,0.000050657494,0.00009371181,0.000010559604,0.000026536838,0.0000012368254,0.98511213,0.0002154293,0.0009011812,0.0034216472],"study_design_scores_gemma":[0.0017238355,0.0038600627,0.03323625,0.0000404681,0.000063179265,0.00024171315,0.000025946905,0.000003273751,0.93640167,0.00029209183,0.023884073,0.00022741815],"about_ca_topic_score_codex":0.000010126263,"about_ca_topic_score_gemma":0.0000052756372,"teacher_disagreement_score":0.04871047,"about_ca_system_score_codex":0.000015780573,"about_ca_system_score_gemma":0.000072914634,"threshold_uncertainty_score":0.82061315},"labels":[],"label_agreement":null},{"id":"W2122231336","doi":"10.1186/1472-6807-4-9","title":"The solution structure of ChaB, a putative membrane ion antiporter regulator from Escherichia coli","year":2004,"lang":"en","type":"article","venue":"BMC Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Alberta","keywords":"Antiporter; Structural genomics; Escherichia coli; Regulator; Chemistry; Divalent; Nuclear magnetic resonance spectroscopy; Biochemistry; Crystallography; Antiporters; Membrane protein; Protein structure; Biophysics; Biology; Stereochemistry; Membrane; Gene","score_opus":0.007204345918250657,"score_gpt":0.23131294516130838,"score_spread":0.2241085992430577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122231336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972843,0.00068552786,0.0003555128,0.00030222567,0.00081845385,0.0002345777,0.00028192168,0.00001604864,0.000021427017],"genre_scores_gemma":[0.9956011,0.00013175979,0.003224948,0.000082851984,0.00037201607,0.0000050007066,0.00053495064,0.000016299486,0.00003104211],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879956,0.000089747635,0.00032184809,0.0004076116,0.0000688964,0.00031231446],"domain_scores_gemma":[0.99919075,0.000020129777,0.00024483184,0.00039217595,0.00010219758,0.000049920578],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005992139,0.00021543993,0.00024611093,0.000029633286,0.00014536493,0.0000149475945,0.000312913,0.00054638804,0.000024895713],"category_scores_gemma":[0.00006972958,0.00014054669,0.00010232075,0.00009576408,0.00051498564,0.00000269321,0.00016722182,0.0001367556,0.00000231291],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025720484,0.0000058165538,0.0011232081,0.0000061574087,0.00007181539,4.038872e-7,0.000029292334,0.000027803928,0.9962519,0.00097559136,0.000021404776,0.0012294386],"study_design_scores_gemma":[0.0007959764,0.00041249904,0.03419507,0.000005471473,0.000023898361,0.000009646654,0.000043344302,0.00002014808,0.95544016,0.0070221582,0.0018519829,0.00017965537],"about_ca_topic_score_codex":0.00020936778,"about_ca_topic_score_gemma":0.00050208933,"teacher_disagreement_score":0.04081171,"about_ca_system_score_codex":0.000019528885,"about_ca_system_score_gemma":0.000099493795,"threshold_uncertainty_score":0.57313275},"labels":[],"label_agreement":null},{"id":"W2123022248","doi":"10.1111/j.1574-6968.2000.tb08972.x","title":"Cloning, over-expression and purification of<i>Pseudomonas aeruginosa murC</i>encoding uridine diphosphate<i>N</i>-acetylmuramate: L-alanine ligase","year":2000,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Global Health and Health Policy, Harvard University","keywords":"DNA ligase; Cloning (programming); Uridine diphosphate; Chemistry; Biochemistry; Uridine; Alanine; Molecular cloning; Pseudomonas aeruginosa; Molecular biology; Biology; Gene; Enzyme; Bacteria; Gene expression; Genetics; RNA; Amino acid; Computer science","score_opus":0.004636271855685902,"score_gpt":0.20151726278945736,"score_spread":0.19688099093377145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123022248","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996872,0.0012508332,0.00007189776,0.0011011861,0.00024786347,0.00023500269,0.00008915936,0.00003478185,0.000097279764],"genre_scores_gemma":[0.99469745,0.0015301127,0.0017247063,0.0010786066,0.0001942401,0.000017937042,0.00054020167,0.000030004781,0.00018672836],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985421,0.00007558929,0.0003774696,0.00057520904,0.000043986198,0.00038569517],"domain_scores_gemma":[0.9992578,0.000014059694,0.00018448549,0.0004345437,0.000035877056,0.000073233794],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00016177174,0.00027216383,0.00030136338,0.00006982341,0.000115069866,0.000021443382,0.00025815924,0.00044606198,0.00012814847],"category_scores_gemma":[0.000021093398,0.00024966695,0.00008618152,0.00010561234,0.00038197762,0.0000065533827,0.00013972464,0.00016673627,0.000014294125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017425505,0.000056902965,0.0017913482,0.000019020146,0.000042548083,0.0000053278895,0.000038406353,0.000017847935,0.99219626,0.00001679492,0.00334347,0.0022978357],"study_design_scores_gemma":[0.00079446397,0.00024256347,0.0020877325,0.000031555785,0.000022818847,0.00009884076,0.000009994966,0.000007636962,0.92737293,0.0000063008933,0.06906429,0.00026083883],"about_ca_topic_score_codex":0.000033723038,"about_ca_topic_score_gemma":0.0000058678197,"teacher_disagreement_score":0.06572082,"about_ca_system_score_codex":0.000011814357,"about_ca_system_score_gemma":0.000021893105,"threshold_uncertainty_score":0.9999955},"labels":[],"label_agreement":null},{"id":"W2123115026","doi":"10.1128/jb.186.6.1606-1613.2004","title":"A Subassembly of R27-Encoded Transfer Proteins Is Dependent on TrhC Nucleoside Triphosphate-Binding Motifs for Function but Not Formation","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Tabula Rasa HealthCare","keywords":"Biology; Nucleoside triphosphate; Plasmid; Biochemistry; Membrane protein; DNA-binding protein; Plasma protein binding; DNA; Cell biology; Gene; Membrane; Nucleotide; Transcription factor","score_opus":0.013821316912015137,"score_gpt":0.22994453693947053,"score_spread":0.2161232200274554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123115026","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97743416,0.00008743777,0.020681018,0.0007375263,0.00056683784,0.00039483406,0.0000730424,0.0000057853977,0.000019342062],"genre_scores_gemma":[0.9976653,0.00024130283,0.0014186507,0.0003057322,0.00025529976,0.000017690341,0.000034974102,0.000022673721,0.00003839344],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986336,0.000052628755,0.00071521,0.00021772034,0.00011838324,0.00026246283],"domain_scores_gemma":[0.9990751,0.000015383552,0.00039838447,0.00020239285,0.00023960849,0.00006911399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034179326,0.00018717883,0.0003840945,0.00015911074,0.00006417792,0.000017166058,0.00021325033,0.00048356137,0.00001753071],"category_scores_gemma":[0.000069049594,0.00015676432,0.00024224329,0.00006988533,0.00007061944,0.000014911598,0.000031480333,0.00017246709,0.0000031430427],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029341155,0.00014088003,0.000053043987,0.00004625547,0.00010550891,0.00000289559,0.00006349796,0.00012360566,0.9929314,0.00016658135,0.000039296716,0.0033928987],"study_design_scores_gemma":[0.0030582792,0.0072686835,0.0016003958,0.00004854059,0.00007138315,0.0001235505,0.00006427926,0.00001770252,0.98495936,0.00024291826,0.0023926727,0.00015225218],"about_ca_topic_score_codex":0.0000125116585,"about_ca_topic_score_gemma":0.000023066294,"teacher_disagreement_score":0.020231107,"about_ca_system_score_codex":0.000052356034,"about_ca_system_score_gemma":0.00012855005,"threshold_uncertainty_score":0.6392664},"labels":[],"label_agreement":null},{"id":"W2123421978","doi":"10.1128/jb.185.6.1886-1894.2003","title":"Leucine-Responsive Regulatory Protein-Mediated Repression of <i>clp</i> (Encoding CS31A) Expression by <scp>l</scp> -Leucine and <scp>l</scp> -Alanine in <i>Escherichia coli</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Methylation; Alanine; DNA methylation; Transcription (linguistics); Psychological repression; Molecular biology; Escherichia coli; Leucine; Phase variation; Operon; Genetics; DNA; Gene; Amino acid; Gene expression; Phenotype","score_opus":0.00665859776955707,"score_gpt":0.21677798950403124,"score_spread":0.21011939173447416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123421978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952669,0.0034581898,0.0001266542,0.0001404413,0.0003759645,0.00032716893,0.000042071788,0.000010496139,0.000252085],"genre_scores_gemma":[0.9955997,0.0017180683,0.001754076,0.00024538263,0.00018684684,0.000014514371,0.000056085068,0.000045704208,0.00037960737],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971705,0.00052255514,0.0010983216,0.0005129407,0.00019046791,0.00050521357],"domain_scores_gemma":[0.9976311,0.00021570774,0.001200508,0.00045465512,0.00029289245,0.0002051689],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00087240076,0.00036534527,0.0007973452,0.00024558924,0.00007625532,0.00002152543,0.0003422362,0.0009176047,0.000009830867],"category_scores_gemma":[0.0025839368,0.00030690263,0.00013777176,0.00025117397,0.00032655065,0.000020976106,0.0002178905,0.00051846454,0.0000017577911],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001807036,0.0001524954,0.003972756,0.000050759914,0.000061864695,0.000032366737,0.000112880836,0.000014616961,0.99117106,0.000024739298,0.004070505,0.00015526674],"study_design_scores_gemma":[0.0021943892,0.0018215069,0.009380184,0.00018299125,0.00003068194,0.00021732283,0.00025191886,0.000007828483,0.920192,0.00009840893,0.0655338,0.00008896796],"about_ca_topic_score_codex":0.000010275696,"about_ca_topic_score_gemma":0.000007660105,"teacher_disagreement_score":0.07097905,"about_ca_system_score_codex":0.00003240617,"about_ca_system_score_gemma":0.00021262286,"threshold_uncertainty_score":0.9999383},"labels":[],"label_agreement":null},{"id":"W2123554027","doi":"10.1128/jb.185.5.1659-1671.2003","title":"Overexpression of the <i>waaZ</i> Gene Leads to Modification of the Structure of the Inner Core Region of <i>Escherichia coli</i> Lipopolysaccharide, Truncation of the Outer Core, and Reduction of the Amount of O Polysaccharide on the Cell Surface","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Escherichia coli; Biology; Salmonella enterica; Gene; Gene cluster; Enterobacteriaceae; Plasmid; Lipopolysaccharide; Molecular biology; Microbiology; Biochemistry","score_opus":0.01393856634347472,"score_gpt":0.22422645931576152,"score_spread":0.21028789297228678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123554027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99735403,0.00019636602,0.00003748989,0.001215643,0.0006366311,0.00044651053,0.000094753435,8.1784555e-7,0.00001775438],"genre_scores_gemma":[0.9993455,0.00024164584,0.00014964942,0.0001401261,0.000055507604,0.0000016767506,0.0000022724964,0.000015027432,0.00004861263],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99806625,0.00042641946,0.0009278505,0.000190442,0.0002443369,0.00014472612],"domain_scores_gemma":[0.9955482,0.000050216084,0.0029729805,0.00092944066,0.00047577807,0.000023389897],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037750727,0.00018183104,0.00042140918,0.000039435712,0.000075536875,0.0000037751379,0.00081674283,0.00038449967,0.0000069985317],"category_scores_gemma":[0.00018517306,0.00007524434,0.0002646237,0.00027100093,0.00074528874,0.000008343855,0.00026371056,0.00029378312,2.921296e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033968428,0.00009525326,0.0073502725,0.000055943412,0.000058711496,2.7178029e-8,0.0002350056,0.00036170904,0.99082685,0.00042270482,0.000152244,0.000101611375],"study_design_scores_gemma":[0.00039318256,0.0004157273,0.0676657,0.00012499928,0.00009071263,0.000029458546,0.00014140339,0.000014707272,0.93053925,0.00031831107,0.00020087782,0.000065677086],"about_ca_topic_score_codex":0.00008102514,"about_ca_topic_score_gemma":0.000024959434,"teacher_disagreement_score":0.060315434,"about_ca_system_score_codex":0.00002102807,"about_ca_system_score_gemma":0.00020263484,"threshold_uncertainty_score":0.3068375},"labels":[],"label_agreement":null},{"id":"W2124160353","doi":"10.1128/jb.01336-06","title":"Wall Teichoic Acid Polymers Are Dispensable for Cell Viability in <i>Bacillus subtilis</i>","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":183,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; McMaster University","funders":"","keywords":"Teichoic acid; Bacillus subtilis; Biology; Cell wall; Mutant; Gene; Biochemistry; Microbiology; Bacteria; Genetics; Peptidoglycan","score_opus":0.0061666270188797095,"score_gpt":0.21239469144144527,"score_spread":0.20622806442256555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124160353","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971253,0.0008706242,0.00029533973,0.0007392554,0.00051867036,0.00020647439,0.000040560768,0.000004879114,0.00019886476],"genre_scores_gemma":[0.9972224,0.00017159151,0.0015458962,0.0002645297,0.00045695915,0.000009924458,0.00005092547,0.000022470316,0.0002552955],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99844146,0.0001338821,0.00066824746,0.00029591256,0.00006756616,0.00039295206],"domain_scores_gemma":[0.9989468,0.000036551643,0.0005086961,0.00028630148,0.00015358687,0.00006808321],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004901155,0.00020045784,0.00043219447,0.00011615408,0.00004065754,0.000014166804,0.0003299878,0.0005972481,0.00004164958],"category_scores_gemma":[0.00010359261,0.00017193884,0.00020863918,0.00010561864,0.00016385461,0.000006719744,0.000088893205,0.00023666081,0.00000305358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051664864,0.00018559667,0.017295962,0.000026112362,0.000019520588,0.000008101056,0.000007519898,0.00002107358,0.98064524,0.000018768176,0.0005075765,0.00074785587],"study_design_scores_gemma":[0.0022541934,0.0017058682,0.06346982,0.00001535414,0.000030075551,0.00012541366,0.000053980562,0.00001583751,0.8467522,0.00057009415,0.08473321,0.00027395345],"about_ca_topic_score_codex":0.00005088629,"about_ca_topic_score_gemma":0.00031174376,"teacher_disagreement_score":0.13389306,"about_ca_system_score_codex":0.000047240934,"about_ca_system_score_gemma":0.00011760969,"threshold_uncertainty_score":0.7011462},"labels":[],"label_agreement":null},{"id":"W2124401245","doi":"10.1007/s10482-010-9538-x","title":"Metabolic networks to combat oxidative stress in Pseudomonas fluorescens","year":2010,"lang":"en","type":"review","venue":"Antonie van Leeuwenhoek","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Laurentian University","funders":"","keywords":"Oxidative stress; Oxidative phosphorylation; Pseudomonas fluorescens; Biology; Citric acid cycle; Biochemistry; Reactive oxygen species; NAD+ kinase; Metabolic pathway; Cell biology; Metabolism; Enzyme; Bacteria; Genetics","score_opus":0.014908491474587334,"score_gpt":0.28488135273426035,"score_spread":0.269972861259673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124401245","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004023739,0.9929519,0.00017573303,0.000075233685,0.0009561088,0.001116306,0.0002943425,0.00003608123,0.000370526],"genre_scores_gemma":[0.0015582506,0.9945874,0.0009389839,0.00017577205,0.0008382043,0.00015574163,0.0011842941,0.00013404113,0.0004272757],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968981,0.00020520842,0.00076754455,0.0011292261,0.00016348343,0.0008364473],"domain_scores_gemma":[0.9981584,0.000033259097,0.00032484354,0.0011446346,0.00009820821,0.00024066897],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00026861753,0.00077155966,0.0016185673,0.00033312498,0.00008485332,0.00007897567,0.0009938215,0.0019147485,0.000055135028],"category_scores_gemma":[0.000096004165,0.0006684648,0.00042847838,0.0005498395,0.00019550667,0.000004130536,0.00063950283,0.0009881661,0.000100084064],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027518985,0.00017356641,0.000031225736,0.00042163275,0.0001862774,0.000035369976,0.000023981096,0.000013620698,0.020392254,0.0002135252,0.00076129887,0.9777197],"study_design_scores_gemma":[0.00029474593,0.0002677996,0.000037512633,0.0008128512,0.00018768437,0.000040600087,0.000011156049,0.0000056527297,0.0115042925,0.000020022788,0.9860526,0.00076512067],"about_ca_topic_score_codex":0.000059063976,"about_ca_topic_score_gemma":0.0006518136,"teacher_disagreement_score":0.98529124,"about_ca_system_score_codex":0.000024639772,"about_ca_system_score_gemma":0.0002445844,"threshold_uncertainty_score":0.9995766},"labels":[],"label_agreement":null},{"id":"W2124530114","doi":"10.1016/j.bbamem.2007.07.021","title":"Structural biology of membrane-intrinsic β-barrel enzymes: Sentinels of the bacterial outer membrane","year":2007,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":134,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Health Sciences Centre; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research","keywords":"Bacterial outer membrane; Periplasmic space; Porin; Biology; Biochemistry; Lipid bilayer; Outer membrane efflux proteins; Membrane; Biophysics; Cell biology; Chemistry; Escherichia coli","score_opus":0.027602650601610546,"score_gpt":0.30045135983749244,"score_spread":0.2728487092358819,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124530114","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6715294,0.32160905,0.0000037335326,0.00021184969,0.0027755979,0.0014155911,0.0022809256,0.00005427705,0.00011956691],"genre_scores_gemma":[0.24006656,0.75554323,0.00022180265,0.000098822,0.0014026008,0.000045044548,0.002234684,0.0001841824,0.0002030545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99459106,0.00054087274,0.0020644355,0.0014614223,0.00039264615,0.00094956736],"domain_scores_gemma":[0.9951036,0.00012791241,0.0021329487,0.0021761064,0.00027840363,0.00018100356],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.00045069004,0.0013465504,0.0028884043,0.00052238855,0.00014607355,0.00006119735,0.0023183941,0.0024599438,0.000085640975],"category_scores_gemma":[0.00012522597,0.0009111951,0.0018656978,0.0010313025,0.0016494233,0.00001381794,0.0013023692,0.0006105848,0.000014025714],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019853853,0.00015422204,7.424066e-7,0.0047255997,0.0009018802,0.0000029284665,0.000033287506,2.7276084e-7,0.96392804,0.00021820905,0.00012530848,0.029710984],"study_design_scores_gemma":[0.0006452434,0.00034403775,0.000025421461,0.00084126316,0.0006660896,0.00007435572,0.000010163228,0.0000013478268,0.7331158,0.000022698081,0.26351961,0.00073395716],"about_ca_topic_score_codex":0.00006501452,"about_ca_topic_score_gemma":0.00002018704,"teacher_disagreement_score":0.4339342,"about_ca_system_score_codex":0.000036257745,"about_ca_system_score_gemma":0.00057001173,"threshold_uncertainty_score":0.99992853},"labels":[],"label_agreement":null},{"id":"W2124757156","doi":"10.1016/j.cub.2007.09.005","title":"H-NS promotes looped domain formation in the bacterial chromosome","year":2007,"lang":"en","type":"letter","venue":"Current Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":110,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Biology; Nucleoid; DNA; Cell biology; Histone; Circular bacterial chromosome; Genome; Chromosome segregation; Chromosome; Genetics; Computational biology; Gene; DNA replication; Escherichia coli","score_opus":0.020876628336466595,"score_gpt":0.27448850838651107,"score_spread":0.2536118800500445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124757156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7967624,0.0040274006,0.0006117851,0.1891184,0.0064853695,0.0018208758,0.0005613226,0.000054537144,0.0005578961],"genre_scores_gemma":[0.48021844,0.007233709,0.0012973873,0.35256207,0.0665503,0.00077160215,0.09057684,0.00031000323,0.0004796365],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977139,0.00032493315,0.0005356239,0.0006250123,0.000115045,0.00068548345],"domain_scores_gemma":[0.99891126,0.000030235955,0.00027585472,0.000684025,0.00006798917,0.000030649346],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004038078,0.0004178898,0.00038179936,0.00019203254,0.00007675568,0.000046950092,0.0008399617,0.0023243106,0.00005511876],"category_scores_gemma":[0.0000631761,0.00029517195,0.00015787806,0.00018156444,0.0003076841,0.000003599618,0.00025889528,0.0011471661,0.00004630666],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007141726,0.00009065999,0.00006778326,0.00010282177,0.000037343154,0.000031323074,0.00006893911,1.0295033e-7,0.670977,0.00007637913,0.31804827,0.010427941],"study_design_scores_gemma":[0.0005396423,0.00048542037,0.00011141784,0.00003171027,0.000019540556,0.00010064362,0.000012516473,0.0000014134555,0.037774317,0.00045950175,0.960099,0.00036490554],"about_ca_topic_score_codex":0.000011117894,"about_ca_topic_score_gemma":0.00007375192,"teacher_disagreement_score":0.6420507,"about_ca_system_score_codex":0.00003448044,"about_ca_system_score_gemma":0.000077213495,"threshold_uncertainty_score":0.99995005},"labels":[],"label_agreement":null},{"id":"W2124852305","doi":"10.1126/science.1106974","title":"The Selective Cause of an Ancient Adaptation","year":2005,"lang":"en","type":"article","venue":"Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":140,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of General Medical Sciences","keywords":"Isocitrate dehydrogenase; NAD+ kinase; IDH1; Biology; Gene; Isocitrate lyase; Dehydrogenase; Genetics; Genome; Nicotinamide adenine dinucleotide; Phylogenetic tree; Biochemistry; Nicotinamide adenine dinucleotide phosphate; Enzyme; Mutation; Glyoxylate cycle","score_opus":0.010070613502828653,"score_gpt":0.25400316565495984,"score_spread":0.2439325521521312,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124852305","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99903643,0.00017069899,0.00019836391,0.00023431903,0.00009256672,0.000053563133,0.0000024093379,0.0000035263881,0.00020812413],"genre_scores_gemma":[0.9983391,0.000075040225,0.0013872159,0.000063888736,0.00006364831,0.0000027243475,0.000002013215,0.0000020681305,0.000064261156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995371,0.000011090532,0.00007380666,0.00015642036,0.000088866844,0.00013269046],"domain_scores_gemma":[0.9996231,0.0000025744287,0.000040023504,0.00019821018,0.000107281834,0.00002876279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025164624,0.00003614247,0.000028815464,0.000018912984,0.00012730269,0.000015566577,0.00024074057,0.000040336858,0.0000011718219],"category_scores_gemma":[0.000056320176,0.000024539288,0.000011355697,0.00016286765,0.00041746584,0.0000033688223,0.000059525468,0.000025927742,0.0000019707963],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012828746,0.000012993748,0.000038569462,2.8635304e-7,0.0000015189029,4.8793677e-8,0.000036602658,0.000079831145,0.9649588,0.00019186494,0.000021635988,0.03464503],"study_design_scores_gemma":[0.00006152421,0.00029813944,0.0058093322,7.301103e-7,0.0000016809,0.0000036082708,0.00006405234,0.0007426272,0.9744293,0.000065214495,0.01848605,0.000037748658],"about_ca_topic_score_codex":0.0000045509582,"about_ca_topic_score_gemma":0.00017447787,"teacher_disagreement_score":0.03460728,"about_ca_system_score_codex":0.000008230314,"about_ca_system_score_gemma":0.00012263315,"threshold_uncertainty_score":0.15381703},"labels":[],"label_agreement":null},{"id":"W2125009011","doi":"10.1111/j.1365-2958.2007.05785.x","title":"An atypical receiver domain controls the dynamic polar localization of the <i>Myxococcus xanthus</i> social motility protein FrzS","year":2007,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Science Foundation","keywords":"Myxococcus xanthus; Biology; Phosphorylation; Motility; Mutant; Cell biology; Mutation; Function (biology); Protein domain; Biophysics; Biochemistry; Gene","score_opus":0.0027325028816420852,"score_gpt":0.21659780381091967,"score_spread":0.21386530092927758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125009011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.975169,0.00037887465,0.022487437,0.0008434959,0.00020801001,0.0006973777,0.00012312047,0.000015716849,0.00007696566],"genre_scores_gemma":[0.9983758,0.000012945465,0.00039831546,0.00084267807,0.000087907916,0.000014970746,0.00021033938,0.000025340174,0.000031726413],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982628,0.00041078552,0.0003916506,0.00044721403,0.00006779243,0.00041971094],"domain_scores_gemma":[0.9989605,0.000010419118,0.00020652286,0.00064981484,0.00012894749,0.000043828673],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005590164,0.00022072754,0.00024570836,0.000035738864,0.00020071272,0.000014560677,0.0006404981,0.00072280015,0.000017248427],"category_scores_gemma":[0.000055059307,0.00014358571,0.00018180431,0.00017526452,0.0008291675,0.00000250076,0.00022475401,0.00023762263,0.000004149425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027529494,0.000105952306,0.00050570455,0.0000084116655,0.000060741368,0.000002889774,0.000047683003,0.0000126077275,0.99726534,0.00043493684,0.00008079408,0.0011996636],"study_design_scores_gemma":[0.0006680647,0.0003338069,0.0035458652,0.0000059934023,0.000028549885,0.000034761666,0.000043680415,0.000024621982,0.9521349,0.00036366447,0.04265403,0.00016205166],"about_ca_topic_score_codex":0.000026991695,"about_ca_topic_score_gemma":0.00019566045,"teacher_disagreement_score":0.04513041,"about_ca_system_score_codex":0.000026647782,"about_ca_system_score_gemma":0.00006941322,"threshold_uncertainty_score":0.5855255},"labels":[],"label_agreement":null},{"id":"W2125031052","doi":"10.1007/0-387-30871-7_2","title":"Preprotein Translocation through the Sec Translocon in Bacteria","year":2007,"lang":"en","type":"book-chapter","venue":"Molecular biology intelligence unit","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Translocon; Translocase; Chromosomal translocation; Twin-arginine translocation pathway; Bacteria; Biology; Cell biology; Computational biology; Biochemistry; Membrane transport protein; Membrane protein; Genetics; Membrane; Gene","score_opus":0.029908140523842483,"score_gpt":0.29315196128192195,"score_spread":0.26324382075807945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125031052","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17141771,0.032215837,0.48866627,0.0057204114,0.0029982175,0.008293782,0.00064194424,0.00025754678,0.28978828],"genre_scores_gemma":[0.93094665,0.010894048,0.0059576742,0.0029837936,0.000821065,0.00022121532,0.0029421158,0.0003482777,0.04488516],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975023,0.00011295791,0.00074134354,0.0009695841,0.0001295952,0.0005442159],"domain_scores_gemma":[0.998419,0.000024128767,0.00024793512,0.0010999081,0.00014443358,0.00006462626],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00042831758,0.0005824418,0.00044946704,0.00017073439,0.00008668946,0.000029067502,0.00091032067,0.0023163778,0.00028030813],"category_scores_gemma":[0.000045401674,0.00048009367,0.0002502635,0.00011194645,0.00074562785,0.0000034476652,0.0001565118,0.00073132326,0.000077592274],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018121925,0.000043303102,0.000014548305,0.000026657794,0.00015022805,0.000028677407,0.0001083995,0.00004774391,0.8998075,0.05701263,0.0000384938,0.0425406],"study_design_scores_gemma":[0.00017955674,0.0005111639,0.000017149425,0.00007570281,0.000038976716,0.000043295586,0.000028594792,0.00000903224,0.65867746,0.02097567,0.31891972,0.0005237005],"about_ca_topic_score_codex":0.00009570525,"about_ca_topic_score_gemma":0.00064998196,"teacher_disagreement_score":0.75952893,"about_ca_system_score_codex":0.000030165733,"about_ca_system_score_gemma":0.00015353678,"threshold_uncertainty_score":0.9997651},"labels":[],"label_agreement":null},{"id":"W2125036059","doi":"10.1007/s10858-011-9537-x","title":"Dissecting electrostatic interactions in Bacillus circulans xylanase through NMR-monitored pH titrations","year":2011,"lang":"en","type":"article","venue":"Journal of Biomolecular NMR","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Bacillus circulans; Chemistry; Titration; Xylanase; Biochemistry; Inorganic chemistry; Enzyme","score_opus":0.021399936232804718,"score_gpt":0.27691874791775506,"score_spread":0.25551881168495033,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125036059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98869133,0.00058270514,0.009054266,0.00018640494,0.00040556036,0.000114671944,0.000011593489,0.000007050782,0.0009464064],"genre_scores_gemma":[0.9960686,0.00023016527,0.0032401495,0.00011594991,0.00023244524,0.000004449259,0.00002465907,0.000022750417,0.000060850365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988549,0.00006687212,0.00048234675,0.00020483592,0.00012219945,0.00026884634],"domain_scores_gemma":[0.9991903,0.000008510907,0.0002750674,0.00025294154,0.00020022228,0.000072965646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016860093,0.00016073183,0.000206434,0.00014930386,0.00006607269,0.000028280545,0.00023654793,0.00014898238,0.00003110627],"category_scores_gemma":[0.00012758779,0.00014725821,0.00015983875,0.00024288148,0.00007790899,0.000012556109,0.00005530889,0.00024004786,0.0000063408647],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009567089,0.00017213037,0.0016082708,0.0000082299575,0.00009771732,0.000096441,0.00019475534,0.000011253801,0.99675673,0.000117747,0.000115461335,0.0007256163],"study_design_scores_gemma":[0.00078203995,0.0007552465,0.0045752567,0.00004183142,0.00005479091,0.0005512987,0.0003464382,0.000047407153,0.98553187,0.0007419445,0.006343106,0.00022877824],"about_ca_topic_score_codex":0.00006562432,"about_ca_topic_score_gemma":0.00017186321,"teacher_disagreement_score":0.0112248445,"about_ca_system_score_codex":0.00003591016,"about_ca_system_score_gemma":0.000104303916,"threshold_uncertainty_score":0.60050154},"labels":[],"label_agreement":null},{"id":"W2125227950","doi":"10.1128/jb.01296-06","title":"Characterization of OpdH, a <i>Pseudomonas aeruginosa</i> Porin Involved in the Uptake of Tricarboxylates","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Deutsche Forschungsgemeinschaft; University of Washington","keywords":"Porin; Biology; Pseudomonas aeruginosa; Derepression; Bacterial outer membrane; Microbiology; Biochemistry; Bacteria; Cell biology; Genetics; Gene; Gene expression; Escherichia coli","score_opus":0.007883779566063225,"score_gpt":0.21262684864500234,"score_spread":0.2047430690789391,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125227950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986892,0.0003086636,0.00009126374,0.00037803367,0.00030156077,0.00011383613,0.00002106321,0.000001595848,0.00009481238],"genre_scores_gemma":[0.9985432,0.0004970609,0.0004556792,0.000091576774,0.00032124182,0.0000029177195,0.00006173405,0.000010130419,0.00001647286],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99857545,0.0001319419,0.0008891558,0.00013635561,0.00009550554,0.00017160205],"domain_scores_gemma":[0.9987202,0.000021024607,0.0008385304,0.00022846299,0.0001707195,0.000021004942],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004573121,0.00012923164,0.000380317,0.00014306845,0.00001507322,0.0000066113635,0.00035969907,0.0003071007,0.000011699862],"category_scores_gemma":[0.000060659597,0.00009071466,0.00013477771,0.00016997251,0.0001599098,0.0000053656013,0.00006432804,0.00015363777,4.6504854e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024983988,0.00014704502,0.0081763305,0.000014495557,0.000030865907,0.0000062589625,0.000029521414,0.000007222121,0.99007344,0.00015168104,0.000058906862,0.0010544083],"study_design_scores_gemma":[0.00088277826,0.0011501438,0.23354003,0.000021240274,0.000027331598,0.000103762475,0.000051212377,0.000005286574,0.75045717,0.00020989639,0.013455056,0.00009612774],"about_ca_topic_score_codex":0.000030682695,"about_ca_topic_score_gemma":0.000025914624,"teacher_disagreement_score":0.23961627,"about_ca_system_score_codex":0.000008208201,"about_ca_system_score_gemma":0.00009184637,"threshold_uncertainty_score":0.36992365},"labels":[],"label_agreement":null},{"id":"W2125442696","doi":"10.1111/j.1574-6968.1997.tb10201.x","title":"Analysis of the icsBA locus required for biosynthesis of the inner core region from Neisseria meningitidis lipopolysaccharide","year":2006,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Neisseria meningitidis; Lipopolysaccharide; Microbiology; Locus (genetics); Neisseriaceae; Biosynthesis; Inner core; Genetics; Biology; Gene; Bacteria; Antibiotics; Immunology; Physics","score_opus":0.009217967923779031,"score_gpt":0.20345050333979273,"score_spread":0.1942325354160137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125442696","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99536026,0.00022711635,0.00037508467,0.002851599,0.00043245606,0.00025734204,0.0004793355,0.0000072026733,0.00000959866],"genre_scores_gemma":[0.9985399,0.00002418725,0.0002944299,0.00062468904,0.00013593039,0.000014672141,0.00027586726,0.000018339955,0.00007198508],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988759,0.00007815261,0.0003939377,0.0003724025,0.000031124473,0.00024848912],"domain_scores_gemma":[0.9987055,0.00003839022,0.00042318206,0.00074707303,0.000070559734,0.000015305422],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010170573,0.0001820607,0.00034193395,0.000084056635,0.00008570374,0.00000680835,0.0005919756,0.00039319598,0.000008818621],"category_scores_gemma":[0.000057315974,0.00011489237,0.00041657628,0.00027955958,0.00054160523,0.0000018416338,0.00022381009,0.00008174453,5.2605367e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009373212,0.000031810276,0.010502784,0.0000053117674,0.0005265842,2.0251326e-7,0.000015840853,0.00006771909,0.9863621,0.00006574248,0.002110539,0.00021764012],"study_design_scores_gemma":[0.0002879177,0.00006155897,0.009063024,0.000012766535,0.00046488736,0.000004255966,0.000017649256,0.000016408134,0.98368925,0.00006136977,0.0061830124,0.0001378987],"about_ca_topic_score_codex":0.0004989297,"about_ca_topic_score_gemma":0.0004611087,"teacher_disagreement_score":0.0040724734,"about_ca_system_score_codex":0.000014273413,"about_ca_system_score_gemma":0.000032233496,"threshold_uncertainty_score":0.46851748},"labels":[],"label_agreement":null},{"id":"W2125499531","doi":"10.1007/s00438-007-0311-4","title":"RpoS regulation of gene expression during exponential growth of Escherichia coli K12","year":2007,"lang":"en","type":"article","venue":"Molecular Genetics and Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"rpoS; Biology; Mutant; Gene; Escherichia coli; Exponential growth; Sigma factor; Operon; Genetics; Phenotype; Gene expression; Regulation of gene expression; Regulator; Promoter","score_opus":0.004251151278855612,"score_gpt":0.19671180396077081,"score_spread":0.1924606526819152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125499531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9850612,0.0015865488,0.0128764175,0.000020635609,0.00012997755,0.00020951942,0.000025225152,0.0000060587963,0.00008440921],"genre_scores_gemma":[0.9799443,0.0006876185,0.019118253,0.00002591587,0.000099045814,0.0000032439311,0.00006449605,0.000032189888,0.00002495695],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988347,0.000030246616,0.00042839578,0.00033298985,0.00012484554,0.00024876406],"domain_scores_gemma":[0.9991764,0.000004681946,0.00023589277,0.0003619001,0.00013947941,0.00008166092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018883368,0.00017830767,0.00021851528,0.00008816991,0.000051008006,0.00001040295,0.00017923104,0.00034291655,0.0000057949073],"category_scores_gemma":[0.000019948784,0.00018973234,0.00008650501,0.000097995224,0.00016031342,0.0000018807292,0.00020340334,0.00007151087,4.7181845e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019275154,0.00004599076,0.0010642839,0.000043359534,0.00004301198,0.000002497053,0.00004500764,0.00009910133,0.99772507,0.00011091509,0.0000070791184,0.0006209427],"study_design_scores_gemma":[0.0006204328,0.00028740522,0.023541886,0.000010925259,0.00003134731,0.000009724101,0.000026859088,0.00005632476,0.9745891,0.00018549681,0.00044938078,0.00019113664],"about_ca_topic_score_codex":0.000013110201,"about_ca_topic_score_gemma":0.000008141812,"teacher_disagreement_score":0.023135979,"about_ca_system_score_codex":0.000012407698,"about_ca_system_score_gemma":0.000048276164,"threshold_uncertainty_score":0.773706},"labels":[],"label_agreement":null},{"id":"W2125764166","doi":"10.1128/jb.00543-07","title":"Protein Modulator of Multidrug Efflux Gene Expression in<i>Pseudomonas aeruginosa</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Queen's University","funders":"","keywords":"Biology; Efflux; Pseudomonas aeruginosa; Gene; Multiple drug resistance; Microbiology; Gene expression; Bacterial protein; Genetics; Molecular biology; Bacteria; Drug resistance","score_opus":0.006764237079652039,"score_gpt":0.231307601002816,"score_spread":0.22454336392316396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125764166","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772835,0.0003810099,0.0011576999,0.000113307295,0.0003862925,0.00016109704,0.0000093692715,0.0000033396736,0.00005955447],"genre_scores_gemma":[0.9883038,0.0001645234,0.011022116,0.00006254743,0.00037168403,0.0000024504616,0.000013720007,0.000018412447,0.00004074605],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847656,0.00008903776,0.00081099424,0.0002160441,0.00010473389,0.0003026406],"domain_scores_gemma":[0.9988484,0.000018479934,0.00059600687,0.0002787307,0.00016955992,0.00008885068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064305536,0.00017049187,0.00040561115,0.00019434003,0.0000220268,0.0000055088067,0.00031883232,0.0005002652,0.000021893931],"category_scores_gemma":[0.00012815055,0.00014000363,0.00014090582,0.00010554986,0.00015919952,0.000005318477,0.00015070195,0.00023502386,0.0000023452326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056816824,0.00013030058,0.007929904,0.000016690441,0.000030342366,0.000022549782,0.000026874763,0.000019108209,0.9891802,0.000016145897,0.000049049955,0.0020106726],"study_design_scores_gemma":[0.0011388862,0.0009822015,0.031697217,0.000042440864,0.000008606139,0.00019342286,0.000023557322,0.000004982454,0.9612857,0.00006855242,0.0044208374,0.00013357031],"about_ca_topic_score_codex":0.000010848157,"about_ca_topic_score_gemma":0.00002060659,"teacher_disagreement_score":0.027894465,"about_ca_system_score_codex":0.00002104112,"about_ca_system_score_gemma":0.00009141992,"threshold_uncertainty_score":0.5709182},"labels":[],"label_agreement":null},{"id":"W2126694600","doi":"10.1128/jb.01389-07","title":"HasB, the<i>Serratia marcescens</i>TonB Paralog, Is Specific to HasR","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Institut national de la recherche scientifique","keywords":"Serratia marcescens; Biology; Escherichia coli; Receptor; Heme; Siderophore; Microbiology; Function (biology); Cell biology; Biochemistry; Gene; Enzyme","score_opus":0.01240325150200263,"score_gpt":0.24635182902824312,"score_spread":0.2339485775262405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126694600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98764044,0.0006142097,0.0019679018,0.0077438424,0.0014898219,0.00014003323,0.000015023981,0.0000058382457,0.00038288767],"genre_scores_gemma":[0.9919073,0.00046983632,0.0024473288,0.0031289414,0.001454346,0.0000018409872,0.0000150175265,0.000023608938,0.0005517799],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984326,0.00008028538,0.000642487,0.00026417465,0.00014808397,0.00043240265],"domain_scores_gemma":[0.9987132,0.000026403852,0.0003546621,0.0004372497,0.00031002186,0.00015848817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008806803,0.0002052798,0.00032548973,0.00012301264,0.00009547709,0.00003784815,0.00060048356,0.00042972108,0.00012352366],"category_scores_gemma":[0.00008854897,0.00014100109,0.0001809074,0.0001456414,0.00021205127,0.000004311504,0.00018915732,0.00030799757,0.00004090461],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047238343,0.000045224853,0.0014158587,0.0000032127116,0.00006898075,0.000026352349,0.000074660944,0.0000035360977,0.9658492,0.00007797587,0.025393825,0.0065687904],"study_design_scores_gemma":[0.00037926572,0.0012278215,0.03119902,0.000007827659,0.000014652702,0.0005193315,0.00006216017,7.1545105e-7,0.31144696,0.00011340459,0.65488446,0.00014439852],"about_ca_topic_score_codex":0.0000076204064,"about_ca_topic_score_gemma":0.000041984473,"teacher_disagreement_score":0.65440226,"about_ca_system_score_codex":0.000020684232,"about_ca_system_score_gemma":0.00007687646,"threshold_uncertainty_score":0.57498574},"labels":[],"label_agreement":null},{"id":"W2126917641","doi":"10.1046/j.1365-2958.2002.03112.x","title":"A third envelope stress signal transduction pathway in <i>Escherichia coli</i>","year":2002,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":210,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Fondation pour la Recherche Médicale","keywords":"Biology; Periplasmic space; Signal transduction; Regulon; Mutant; Cell envelope; Cell biology; Bacterial outer membrane; Gene; Escherichia coli; Genetics","score_opus":0.006321247658827357,"score_gpt":0.18580391205356556,"score_spread":0.1794826643947382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126917641","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946009,0.0019303821,0.0013509844,0.00061025115,0.00027944846,0.00027574477,0.000081474405,0.000029209943,0.0008416072],"genre_scores_gemma":[0.99682015,0.0003459757,0.0011852541,0.0009031616,0.00010950617,0.00003572818,0.00025911906,0.000034270917,0.0003068606],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99838436,0.00015897813,0.0003317606,0.0006001907,0.000042547355,0.00048216476],"domain_scores_gemma":[0.99943036,0.000005167792,0.00008358051,0.00036748545,0.00004947327,0.00006391349],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012071587,0.00026453027,0.00026494337,0.00010265933,0.000051717583,0.000018688284,0.00031557216,0.00069163134,0.00021069655],"category_scores_gemma":[0.000016445882,0.00026643087,0.00011599183,0.00020390282,0.00019358404,0.0000027777014,0.00011236913,0.00024208866,0.000050930295],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053507785,0.0001503299,0.0002242673,0.0000124210765,0.000038397044,0.00003335037,0.000041446456,0.0000329016,0.996697,0.00011083428,0.00050928484,0.0020962567],"study_design_scores_gemma":[0.00068651873,0.00037152212,0.0001428691,0.00001032989,0.000007493225,0.00006307622,0.000019831268,0.000016135375,0.8706999,0.000040112696,0.12765688,0.00028532828],"about_ca_topic_score_codex":0.000021393162,"about_ca_topic_score_gemma":0.00008391443,"teacher_disagreement_score":0.1271476,"about_ca_system_score_codex":0.000020990912,"about_ca_system_score_gemma":0.00003121929,"threshold_uncertainty_score":0.9999788},"labels":[],"label_agreement":null},{"id":"W2127920700","doi":"10.1128/jb.187.19.6622-6630.2005","title":"Cpx Signal Transduction Is Influenced by a Conserved N-Terminal Domain in the Novel Inhibitor CpxP and the Periplasmic Protease DegP","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Fondation pour la Recherche Médicale","keywords":"Periplasmic space; Biology; Response regulator; Protease; Signal transduction; Mutant; Cell biology; Conserved sequence; Mutation; Peptide sequence; Cell envelope; Biochemistry; Genetics; Escherichia coli; Gene; Enzyme","score_opus":0.006349856143970825,"score_gpt":0.22036238169853764,"score_spread":0.21401252555456682,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127920700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897141,0.00056913146,0.00018575377,0.0090957135,0.00013295744,0.00026339514,0.000022908813,0.0000021491417,0.000013899262],"genre_scores_gemma":[0.9968657,0.00030283476,0.00075163995,0.0015893044,0.00043178935,0.000017611195,0.000009142765,0.000009903347,0.00002205841],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987723,0.00023518814,0.0004902887,0.00019263304,0.000088258734,0.00022132801],"domain_scores_gemma":[0.99937755,0.000032428914,0.0002945615,0.0001744064,0.00007395011,0.000047131933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006719525,0.00016127642,0.00026716694,0.000060712002,0.00007960466,0.000036658646,0.00029693282,0.00030663988,0.00003405597],"category_scores_gemma":[0.000043167693,0.00009205899,0.000102821556,0.00007371059,0.0005441901,0.000009453129,0.000051736217,0.00032612716,0.000001300397],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013721378,0.00008180586,0.0005145597,0.0000071809964,0.000035436995,0.000006544935,0.00033168832,0.0000045907627,0.99524355,0.000031549633,0.00035249794,0.0020184282],"study_design_scores_gemma":[0.012027592,0.0031373387,0.0139602665,0.00005483246,0.00009594039,0.0069440384,0.0006472953,0.00009668961,0.8046459,0.00035890748,0.15761414,0.0004170634],"about_ca_topic_score_codex":0.000016130027,"about_ca_topic_score_gemma":0.00003598155,"teacher_disagreement_score":0.19059768,"about_ca_system_score_codex":0.000015222134,"about_ca_system_score_gemma":0.000096387615,"threshold_uncertainty_score":0.37540564},"labels":[],"label_agreement":null},{"id":"W2128575764","doi":"10.1111/j.1365-2958.2012.08059.x","title":"The evolution of new lipoprotein subunits of the bacterial outer membrane BAM complex","year":2012,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; National Health and Medical Research Council; National Institutes of Health; Australian Research Council; Monash University","keywords":"Biology; Bama; Protein subunit; Bacterial outer membrane; Proteobacteria; Escherichia coli; Genetics; Bacteria; Gene","score_opus":0.00839426571173557,"score_gpt":0.20739141607269512,"score_spread":0.19899715036095955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128575764","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962399,0.0012947322,0.0006065956,0.000542366,0.0007487498,0.0002975991,0.000055660756,0.0000061501396,0.000208254],"genre_scores_gemma":[0.99872214,0.000060856877,0.0004972735,0.00010500783,0.00022777346,0.0000068932445,0.00008856679,0.000018879862,0.0002726133],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884707,0.00019220244,0.00033911754,0.00020721268,0.000049048456,0.0003653718],"domain_scores_gemma":[0.99897236,0.000010930444,0.00023366751,0.0006395896,0.00009413127,0.000049318834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022418029,0.00016797571,0.00021161405,0.00003184198,0.0000798102,0.000006804187,0.00053040124,0.00039139244,0.000032663273],"category_scores_gemma":[0.00007578047,0.00010552387,0.00015829777,0.00012764893,0.00042631596,0.0000021139813,0.00039269507,0.000112778114,0.000005538426],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011389635,0.000043419,0.00035118603,0.000009661896,0.000075136384,2.0582952e-7,0.000021835609,0.0000024699734,0.9965539,0.00074102654,0.0008149683,0.0012722756],"study_design_scores_gemma":[0.00038788602,0.00017391042,0.0025274323,0.000006144675,0.000026024616,0.0000422279,0.000019428362,8.3032006e-7,0.86332923,0.000053739477,0.13332759,0.00010553105],"about_ca_topic_score_codex":0.00018360383,"about_ca_topic_score_gemma":0.0001233885,"teacher_disagreement_score":0.13322467,"about_ca_system_score_codex":0.000018439867,"about_ca_system_score_gemma":0.00010501989,"threshold_uncertainty_score":0.43031386},"labels":[],"label_agreement":null},{"id":"W2128588041","doi":"10.1002/prot.10424","title":"NMR structure of the hypothetical protein AQ‐1857 encoded by the Y157 gene from <i>Aquifex aeolicus</i> reveals a novel protein fold","year":2004,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Aquifex aeolicus; Chemistry; Size-exclusion chromatography; Escherichia coli; Chromatography; Gene; Biochemistry","score_opus":0.004811972937810384,"score_gpt":0.18101233261534944,"score_spread":0.17620035967753905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128588041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98524684,0.0003046848,0.009683642,0.0013465692,0.00020470994,0.0020139134,0.0011274267,0.000027429262,0.000044799268],"genre_scores_gemma":[0.9833644,0.000020914245,0.015218295,0.00075294235,0.0002502067,0.000044871766,0.00019884818,0.000028665745,0.0001208371],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983711,0.000050706098,0.00057008973,0.00033850726,0.00031009683,0.0003594649],"domain_scores_gemma":[0.99864584,0.000006660952,0.00038656886,0.0007392454,0.00012762984,0.00009406841],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010538381,0.00036506163,0.0002918444,0.00004193135,0.00026488188,0.000076193464,0.0004721049,0.00066067505,0.000033203534],"category_scores_gemma":[0.000096449905,0.00020295053,0.000126799,0.0002314668,0.00045645417,0.000014845259,0.0003468011,0.00038098174,0.0000013680067],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015326246,0.000039702903,0.000050788018,0.00005690962,0.000070685,1.2889807e-7,0.000079872654,0.000017308457,0.9953512,0.0010321022,0.00011675611,0.0030312736],"study_design_scores_gemma":[0.0013919021,0.00049166643,0.00057950895,0.000049057235,0.000059908234,0.000036937636,0.00007839198,0.00008072848,0.98127824,0.0054912833,0.010171041,0.00029133825],"about_ca_topic_score_codex":0.00008236876,"about_ca_topic_score_gemma":0.000110731075,"teacher_disagreement_score":0.014072973,"about_ca_system_score_codex":0.000024095858,"about_ca_system_score_gemma":0.00011899217,"threshold_uncertainty_score":0.8276082},"labels":[],"label_agreement":null},{"id":"W2128601698","doi":"10.1128/jb.184.12.3268-3275.2002","title":"FpvA Receptor Involvement in Pyoverdine Biosynthesis in <i>Pseudomonas aeruginosa</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Medical Research Council; Canadian Institutes of Health Research; Cystic Fibrosis Foundation","keywords":"Pyoverdine; Biology; Pseudomonas aeruginosa; Biochemistry; Siderophore; Mutant; Pseudomonas putida; Gene; Bacteria; Genetics","score_opus":0.012262052684459068,"score_gpt":0.2154234565482685,"score_spread":0.20316140386380943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128601698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996224,0.0010620389,0.000020788906,0.0018025745,0.00057338126,0.000103298764,0.000010535484,0.000003405224,0.00019999768],"genre_scores_gemma":[0.9946762,0.0033581841,0.0010869594,0.0004181741,0.00034246067,0.000005018098,0.000010851658,0.000017522276,0.00008467458],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984995,0.0001419461,0.0006959122,0.00024799327,0.000084492756,0.0003301393],"domain_scores_gemma":[0.99927515,0.000023086945,0.00031826558,0.00024188313,0.00006903423,0.00007260348],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036596062,0.00018189462,0.00040470748,0.00027251008,0.000018506047,0.000012968001,0.00032643226,0.00043171403,0.00022161877],"category_scores_gemma":[0.00012218245,0.00015903918,0.000117593314,0.0001799831,0.00011684799,0.0000066045436,0.00013219341,0.0002607759,0.000016903221],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017594536,0.0002026671,0.012942648,0.00000889934,0.00003281781,0.000030728563,0.00004076117,0.000012862601,0.9790545,0.000026962816,0.0011851175,0.0062860744],"study_design_scores_gemma":[0.002858415,0.002486875,0.036109384,0.00008600038,0.000020101932,0.00028852638,0.00012752537,0.000035414352,0.74310076,0.00013722508,0.2143177,0.0004320691],"about_ca_topic_score_codex":0.000023901555,"about_ca_topic_score_gemma":0.00013708857,"teacher_disagreement_score":0.23595375,"about_ca_system_score_codex":0.000049042595,"about_ca_system_score_gemma":0.000038932434,"threshold_uncertainty_score":0.64854294},"labels":[],"label_agreement":null},{"id":"W2129385232","doi":"10.1128/jb.187.20.6893-6901.2005","title":"Genetic Analysis Identifies a Function for the <i>queC</i> ( <i>ybaX</i> ) Gene Product at an Initial Step in the Queuosine Biosynthetic Pathway in <i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Council of Scientific and Industrial Research, India; Indian Council of Medical Research","keywords":"Biology; Escherichia coli; Genetics; Gene; Function (biology); Product (mathematics); Gene product; Escherichia coli Proteins; Computational biology; Gene expression","score_opus":0.010992894949591448,"score_gpt":0.23915089921489277,"score_spread":0.22815800426530133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129385232","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993473,0.0021566951,0.0011285909,0.0022895432,0.00048303284,0.00041602214,0.000033819484,0.000004292021,0.000015020299],"genre_scores_gemma":[0.9955395,0.00082912424,0.0011002993,0.001316992,0.0010611048,0.000047445974,0.000049500173,0.000022014414,0.00003405039],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99794173,0.00039551186,0.0008090951,0.00035977302,0.00012720985,0.0003667023],"domain_scores_gemma":[0.9987494,0.000072093135,0.00045720744,0.000512476,0.00015761852,0.00005125388],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001050688,0.00023209093,0.00043552482,0.00021997713,0.00010830219,0.00005161805,0.00058472663,0.0003042726,0.000021157],"category_scores_gemma":[0.00010519387,0.00014411389,0.00024560883,0.00042314822,0.00021420885,0.000014171164,0.000114662216,0.00026881235,0.0000023837738],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009083627,0.00018622252,0.0020046106,0.000009790681,0.00020986344,0.000007912059,0.00010650627,0.000537615,0.9895738,0.000014455252,0.00018892641,0.0062519484],"study_design_scores_gemma":[0.0025294463,0.0033683658,0.15640715,0.000020871103,0.0005862928,0.00042576718,0.0002337956,0.0005086075,0.66262454,0.00011800237,0.17270507,0.00047206882],"about_ca_topic_score_codex":0.000048806123,"about_ca_topic_score_gemma":0.003548787,"teacher_disagreement_score":0.3269492,"about_ca_system_score_codex":0.000051748942,"about_ca_system_score_gemma":0.00011914461,"threshold_uncertainty_score":0.5876794},"labels":[],"label_agreement":null},{"id":"W2129427556","doi":"10.1128/jb.186.24.8499-8507.2004","title":"RpoS-Regulated Genes of<i>Escherichia coli</i>Identified by Random<i>lacZ</i>Fusion Mutagenesis","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"rpoS; Biology; Operon; Regulon; lac operon; Sigma factor; Gene; Genetics; Escherichia coli; Mutant; Mutagenesis; Promoter; Gene expression; RNA polymerase","score_opus":0.005842437903652915,"score_gpt":0.21475732112508206,"score_spread":0.20891488322142915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129427556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949036,0.0022555292,0.0011684212,0.00047109954,0.0009456875,0.00015948119,0.000036982517,0.000008436244,0.00005072224],"genre_scores_gemma":[0.9949131,0.0025321124,0.0017696832,0.0002273388,0.00031834704,0.000003910311,0.00006607312,0.000031141564,0.00013831224],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982719,0.0001436386,0.0008617796,0.0002784384,0.00013241428,0.00031184414],"domain_scores_gemma":[0.99844027,0.00001775526,0.00079312985,0.00033449865,0.00029848205,0.00011586248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036434995,0.00024305978,0.00059618003,0.00012681852,0.000063739535,0.000019170082,0.0004282181,0.0006079276,0.000050678467],"category_scores_gemma":[0.00008076552,0.00020398792,0.00027287894,0.00015913739,0.00026377456,0.000007659024,0.00015726683,0.00018128837,0.000005160762],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011208171,0.00011814174,0.0004395559,0.000019438774,0.00019652037,0.000013570103,0.000022226368,0.0000970921,0.99567723,0.000027161035,0.0004909847,0.0017772809],"study_design_scores_gemma":[0.0036064428,0.0014472518,0.003561661,0.000027466438,0.00008465465,0.00021340679,0.000030931362,0.0000032053547,0.9575941,0.00017575479,0.033043988,0.00021116472],"about_ca_topic_score_codex":0.00003659889,"about_ca_topic_score_gemma":0.00001643293,"teacher_disagreement_score":0.03808314,"about_ca_system_score_codex":0.00003110033,"about_ca_system_score_gemma":0.00021788712,"threshold_uncertainty_score":0.83183855},"labels":[],"label_agreement":null},{"id":"W2129503731","doi":"10.1128/jb.06052-11","title":"Functional Characterization of UDP-Glucose:Undecaprenyl-Phosphate Glucose-1-Phosphate Transferases of Escherichia coli and Caulobacter crescentus","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; York University","keywords":"Biochemistry; Biology; Caulobacter crescentus; Escherichia coli; Complementation; Transferase; Enzyme; Bacterial capsule; Protein-fragment complementation assay; Mutant; Virulence","score_opus":0.010153523179658263,"score_gpt":0.21772018938703178,"score_spread":0.20756666620737352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129503731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952116,0.0024357475,0.0008235828,0.00019834358,0.0010737764,0.00014630375,0.00008468911,0.000004718589,0.000021242424],"genre_scores_gemma":[0.99380434,0.0048804376,0.0005536431,0.00013167383,0.00043946767,0.0000038953017,0.0001185085,0.000025495516,0.00004257096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833393,0.00013404,0.0008537637,0.00020515553,0.00013063295,0.00034250043],"domain_scores_gemma":[0.9985533,0.000023973327,0.00074361305,0.0002252549,0.000303578,0.00015028608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034850583,0.00023588078,0.0005557746,0.00012750785,0.00004340058,0.000012065272,0.00019414327,0.0004616122,0.00011116857],"category_scores_gemma":[0.0000626262,0.0002030069,0.00016899958,0.00012003863,0.0003020117,0.000026493179,0.00009786564,0.00018577308,0.0000017113147],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001044192,0.00022509054,0.016747786,0.00005716917,0.0002057699,0.0000019793586,0.000053960084,0.0000027208337,0.97808194,0.000112928756,0.000043869783,0.0034225949],"study_design_scores_gemma":[0.0008700274,0.0009910926,0.2902299,0.000028804357,0.0000720285,0.00009338372,0.000019454641,0.000003476044,0.69879115,0.00001967856,0.008744923,0.00013608084],"about_ca_topic_score_codex":0.00001164343,"about_ca_topic_score_gemma":0.000005530955,"teacher_disagreement_score":0.27929077,"about_ca_system_score_codex":0.00001623087,"about_ca_system_score_gemma":0.00011239194,"threshold_uncertainty_score":0.8278381},"labels":[],"label_agreement":null},{"id":"W2129681136","doi":"10.1128/jb.187.16.5648-5657.2005","title":"FpvIR Control of <i>fpvA</i> Ferric Pyoverdine Receptor Gene Expression in <i>Pseudomonas aeruginosa</i> : Demonstration of an Interaction between FpvI and FpvR and Identification of Mutations in Each Compromising This Interaction","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research","keywords":"Sigma factor; Biology; Pyoverdine; Mutant; Binding site; Gene; Biochemistry; Transcription factor; Genetics; Gene expression; Promoter","score_opus":0.00961872600373597,"score_gpt":0.25894546226143805,"score_spread":0.24932673625770208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129681136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99776095,0.00027592824,0.0014287677,0.00020478416,0.00014453751,0.00014350832,0.000029258688,0.0000016380004,0.000010630497],"genre_scores_gemma":[0.99699175,0.00047586428,0.0023125187,0.000014980587,0.00011952411,0.0000027912488,0.00007123598,0.000008405341,0.0000029248488],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847615,0.00019680528,0.0009778826,0.00017607793,0.00006817218,0.00010493297],"domain_scores_gemma":[0.9985901,0.000047417387,0.0010412898,0.00012646259,0.00015804698,0.000036653037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042919963,0.00011195648,0.0003725701,0.00026750367,0.000019232291,0.0000087424005,0.00009385356,0.0002640908,0.0000065986533],"category_scores_gemma":[0.00007232721,0.000105766165,0.000045625624,0.00009972752,0.0001353165,0.000047195754,0.00003971946,0.00017655002,1.462061e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049308134,0.0001232979,0.020740623,0.00002634359,0.000026880769,5.393532e-7,0.00012132345,0.00014062156,0.9673531,0.0000066966218,0.000004411334,0.010963105],"study_design_scores_gemma":[0.0013143896,0.0007856946,0.09244305,0.00007056825,0.000029379298,0.00006398484,0.00012740635,0.00026497175,0.9046051,0.0000313781,0.00018715384,0.00007693132],"about_ca_topic_score_codex":0.0000335827,"about_ca_topic_score_gemma":0.000070135335,"teacher_disagreement_score":0.07170243,"about_ca_system_score_codex":0.000025962709,"about_ca_system_score_gemma":0.000045253317,"threshold_uncertainty_score":0.4313019},"labels":[],"label_agreement":null},{"id":"W2129684249","doi":"10.1128/jb.185.8.2418-2431.2003","title":"Methionine Regeneration and Aminotransferases in <i>Bacillus subtilis</i> , <i>Bacillus cereus</i> , and <i>Bacillus anthracis</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada","funders":"Defence Research and Development Canada","keywords":"Biology; Bacillus subtilis; Biochemistry; Valine; Methionine; Amino acid; Bacillus cereus; Isoleucine; Cereus; Phenylalanine; Leucine; Genetics; Bacteria","score_opus":0.010112419475081647,"score_gpt":0.22937988133892423,"score_spread":0.21926746186384258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129684249","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922354,0.005525747,0.0005689839,0.0007624626,0.00051813736,0.00016192078,0.000032674703,0.000006856952,0.00018779888],"genre_scores_gemma":[0.9860331,0.011218015,0.0018855856,0.0004967492,0.0002198094,0.000006029141,0.000029342893,0.000026686235,0.00008471969],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980055,0.0003225747,0.00076027407,0.00041792705,0.00011672496,0.0003769744],"domain_scores_gemma":[0.9990426,0.000046652844,0.0003048338,0.00027607297,0.00017821712,0.00015166095],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006690493,0.0002992835,0.000558867,0.00019475124,0.000087603265,0.000044792076,0.00017550714,0.00059865514,0.000037066206],"category_scores_gemma":[0.00026234597,0.00025948402,0.00009370209,0.00015313391,0.0003784252,0.000018637458,0.00008887569,0.0003421225,0.0000016986438],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028411683,0.00007645413,0.003272914,0.000024350213,0.00005777234,0.000037485202,0.000059442104,0.000016896236,0.98757255,0.00031493566,0.00017044645,0.008112653],"study_design_scores_gemma":[0.0031767865,0.0028292462,0.0073317685,0.000043832362,0.00006326268,0.0029141183,0.00013768289,0.000017868273,0.85182613,0.00049197295,0.13069087,0.00047643762],"about_ca_topic_score_codex":0.000017529175,"about_ca_topic_score_gemma":0.00015120993,"teacher_disagreement_score":0.13574637,"about_ca_system_score_codex":0.000024460775,"about_ca_system_score_gemma":0.00012819949,"threshold_uncertainty_score":0.99998575},"labels":[],"label_agreement":null},{"id":"W2129794721","doi":"10.1128/jb.00774-12","title":"The β-Lactam Resistance Protein Blr, a Small Membrane Polypeptide, Is a Component of the Escherichia coli Cell Division Machinery","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Institut national de la recherche scientifique","keywords":"Escherichia coli; Cell division; Biology; Membrane protein; Enterobacteriaceae; Mutant; Cell envelope; Bacterial cell structure; Cell membrane; FtsZ; Bacterial outer membrane; Cell; Cell biology; Biochemistry; Bacteria; Microbiology; Gene; Genetics; Membrane","score_opus":0.007768817896038831,"score_gpt":0.2088923473145557,"score_spread":0.20112352941851686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129794721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99498105,0.0020347377,0.00007870568,0.0017951467,0.0006967105,0.0002215331,0.000019507348,0.0000029268667,0.00016967698],"genre_scores_gemma":[0.99722874,0.0005071674,0.0009362339,0.00028919533,0.00033907907,0.0000043762298,0.000004302844,0.000019689985,0.0006712346],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998498,0.00027543228,0.0006000809,0.00015373481,0.00012326623,0.0003494361],"domain_scores_gemma":[0.9984272,0.000035388195,0.0008368268,0.0004602192,0.00015350309,0.00008686308],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058397156,0.00018411681,0.00031554195,0.000039302402,0.00013165115,0.00001724499,0.00060928485,0.000318552,0.00001857716],"category_scores_gemma":[0.00009318603,0.00010083035,0.00022310043,0.000103558974,0.00030812743,0.000005039634,0.00030302122,0.00031414657,0.000002476591],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043694227,0.00011144084,0.0017021239,0.0000240937,0.00006712001,0.0000011811197,0.000046680667,0.0000016884144,0.9965525,0.00005816521,0.0004555756,0.00054245576],"study_design_scores_gemma":[0.000578455,0.00048741273,0.040219,0.000034982626,0.00003259761,0.00004036861,0.00003265961,0.000004444836,0.8506895,0.000052876676,0.107702985,0.0001247502],"about_ca_topic_score_codex":0.000013577355,"about_ca_topic_score_gemma":0.000037422767,"teacher_disagreement_score":0.14586307,"about_ca_system_score_codex":0.000018079316,"about_ca_system_score_gemma":0.000104353196,"threshold_uncertainty_score":0.41117424},"labels":[],"label_agreement":null},{"id":"W2130090089","doi":"10.1128/jb.185.16.4707-4716.2003","title":"Role of <i>Pseudomonas putida tol-oprL</i> Gene Products in Uptake of Solutes through the Cytoplasmic Membrane","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of British Columbia; European Commission","keywords":"Biology; Pseudomonas putida; Mutant; Biochemistry; Bacterial outer membrane; Symporter; Cytoplasm; Sorbitol; Membrane transport; Membrane; Escherichia coli; Transporter; Gene","score_opus":0.009012906068872159,"score_gpt":0.21567746583539557,"score_spread":0.20666455976652343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130090089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958033,0.0028438526,0.000043903015,0.0004789923,0.00045266596,0.0001398365,0.000013840078,0.0000019815106,0.00022160888],"genre_scores_gemma":[0.9945416,0.0015303125,0.003605869,0.000102553546,0.0001431935,0.0000030579845,0.000009212321,0.000016705211,0.000047525875],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983846,0.00017627068,0.0008523946,0.0002163497,0.000099181634,0.00027121278],"domain_scores_gemma":[0.99860495,0.000027819071,0.0007115465,0.00039123977,0.00023332676,0.000031096803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046731305,0.00017315953,0.00048790194,0.00008084796,0.000027572125,0.000006083071,0.00040414487,0.00030100852,0.000018523167],"category_scores_gemma":[0.00025594782,0.000121168545,0.00013663738,0.0001705718,0.000304473,0.000006840338,0.00010288297,0.00022221531,0.0000011669101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001964639,0.00012170219,0.001024135,0.0000215117,0.000091143214,0.0000048402085,0.00007920351,0.000042229087,0.99684733,0.00031682872,0.000074557625,0.0011800351],"study_design_scores_gemma":[0.00072175625,0.0008788911,0.0054774494,0.000018162735,0.000029864706,0.00041073738,0.00010742413,0.0000027232486,0.95545435,0.00048450788,0.036305957,0.000108181994],"about_ca_topic_score_codex":0.00002029793,"about_ca_topic_score_gemma":0.000038978087,"teacher_disagreement_score":0.041393004,"about_ca_system_score_codex":0.000011707544,"about_ca_system_score_gemma":0.00022302613,"threshold_uncertainty_score":0.494111},"labels":[],"label_agreement":null},{"id":"W2130370768","doi":"10.1093/emboj/19.4.702","title":"Selective cell cycle transcription requires membrane synthesis in Caulobacter","year":2000,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Division of Chemistry","keywords":"Biology; Caulobacter crescentus; Transcription (linguistics); Cell cycle; Cell biology; Transcription factor; Cell; Computational biology; Genetics; Gene","score_opus":0.005702749029193307,"score_gpt":0.20726501010098597,"score_spread":0.20156226107179268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130370768","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99544364,0.00040551455,0.000027128426,0.001087137,0.00017162581,0.00008575254,0.000005486462,0.0000066358975,0.002767078],"genre_scores_gemma":[0.9967343,0.0018774654,0.0001177765,0.00019379541,0.000343491,0.0000073195697,0.000004279322,0.000014988302,0.00070654263],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915916,0.00012539302,0.00021064735,0.00016596171,0.000083875304,0.00025498235],"domain_scores_gemma":[0.99966836,0.000009663122,0.00005612664,0.00018882223,0.000031371266,0.00004564271],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027203737,0.00011855495,0.00012069915,0.000041579602,0.0001105004,0.00003990152,0.00024705313,0.00016258427,0.00033566958],"category_scores_gemma":[0.000016306934,0.00008240225,0.0000813286,0.00009731552,0.000076102784,0.000004516616,0.00001903636,0.00023597534,0.000023979193],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018481546,0.00005446475,0.0001006327,0.0000039770457,0.000021083044,0.000005843609,0.00007441431,0.00013206722,0.9865474,0.0000064598653,0.0003886572,0.012480198],"study_design_scores_gemma":[0.0004172044,0.00018704972,0.0043080985,0.00001577429,0.000022205635,0.00020431384,0.000056879973,0.000037113565,0.97441113,0.0003461188,0.019847896,0.0001462078],"about_ca_topic_score_codex":0.000026004012,"about_ca_topic_score_gemma":0.000081954204,"teacher_disagreement_score":0.019459238,"about_ca_system_score_codex":0.000018368386,"about_ca_system_score_gemma":0.000043929744,"threshold_uncertainty_score":0.36753467},"labels":[],"label_agreement":null},{"id":"W2130393314","doi":"10.1016/j.mib.2005.10.006","title":"Protein transport in Archaea: Sec and twin arginine translocation pathways","year":2005,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Archaea; Biology; Twin-arginine translocation pathway; Transport protein; Secretion; Membrane protein; Chromosomal translocation; Cell biology; Membrane transport; Membrane transport protein; Biochemistry; Genetics; Bacteria; Membrane; Gene","score_opus":0.04437904269789663,"score_gpt":0.31549232804002075,"score_spread":0.27111328534212414,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130393314","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0074122897,0.9898681,0.000089249756,0.00007070236,0.0011110253,0.00120777,0.00021701785,0.00001336315,0.000010494677],"genre_scores_gemma":[0.0024051494,0.9923865,0.00022233154,0.000009787223,0.00052374246,0.0002631677,0.004132281,0.000042322758,0.000014712798],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976144,0.0002123321,0.00083898584,0.0008542193,0.00003368984,0.0004463711],"domain_scores_gemma":[0.99932736,0.000010847747,0.0002204887,0.0003572376,0.000027629458,0.00005642859],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00028858462,0.0004658267,0.0009894691,0.0003339704,0.000025242784,0.000007767685,0.00032047988,0.0012109393,0.000014935222],"category_scores_gemma":[0.000016871185,0.0004254235,0.00016312556,0.0002238372,0.00023129617,0.0000027707165,0.00010353312,0.0005683372,0.00000925702],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028751334,0.0001802265,0.000030842875,0.0028488901,0.000024461211,0.0000010951161,0.0000424524,0.0000012050244,0.033802416,0.00011798352,0.000042983487,0.9628787],"study_design_scores_gemma":[0.00076972786,0.00020361737,0.000041727886,0.0029289445,0.000018031333,0.000073250536,0.000007039919,0.0000022110685,0.0006700818,0.000022430566,0.9948291,0.00043380764],"about_ca_topic_score_codex":0.000009587414,"about_ca_topic_score_gemma":0.00013546366,"teacher_disagreement_score":0.99478614,"about_ca_system_score_codex":0.000044316363,"about_ca_system_score_gemma":0.00020839088,"threshold_uncertainty_score":0.99981976},"labels":[],"label_agreement":null},{"id":"W2130426185","doi":"10.1111/mmi.12971","title":"Nucleotide Second Messenger‐Mediated Regulation of a Muralytic Enzyme in <i>Streptomyces</i>","year":2015,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Streptomyces coelicolor; Peptidoglycan; Enzyme; Lytic cycle; Streptomyces; Transcription (linguistics); Transcription factor; Cell biology; Transcriptional regulation; Biochemistry; Stringent response; Bacteria; Genetics; Gene","score_opus":0.006671160987424959,"score_gpt":0.20751158765568484,"score_spread":0.20084042666825988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130426185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977136,0.0008823915,0.00015168305,0.0002727864,0.00019864284,0.00021341586,0.00005671825,0.000016065065,0.00049469015],"genre_scores_gemma":[0.99816275,0.000033311167,0.0007067293,0.0003114337,0.00004502907,0.000011059591,0.0005392245,0.000026542692,0.00016391213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986585,0.00013729028,0.00040181985,0.00042920795,0.00004597497,0.00032722374],"domain_scores_gemma":[0.9991971,0.000010437899,0.00016570542,0.00043065613,0.000120215074,0.00007585678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022819253,0.00019884054,0.00029862224,0.00013903745,0.000013816063,0.0000072830107,0.00026293754,0.00052217575,0.000058872214],"category_scores_gemma":[0.00011125572,0.0001980209,0.00008420729,0.00020874508,0.00020851968,0.0000028981892,0.00018433196,0.00013021668,0.000022117772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010218463,0.00006526888,0.0007896688,0.000013911956,0.000037782887,0.000010864221,0.000026565358,0.000044260443,0.9975603,0.00009246682,0.0010837367,0.00017296232],"study_design_scores_gemma":[0.0010812979,0.00035966764,0.0011501196,0.000010379701,0.000011640108,0.00005915859,0.00003029756,0.000021385606,0.95132464,0.00012801068,0.04562038,0.00020299472],"about_ca_topic_score_codex":0.000026213676,"about_ca_topic_score_gemma":0.00011363969,"teacher_disagreement_score":0.046235662,"about_ca_system_score_codex":0.000023697883,"about_ca_system_score_gemma":0.00010585589,"threshold_uncertainty_score":0.80750585},"labels":[],"label_agreement":null},{"id":"W2130441538","doi":"10.1016/j.molcel.2011.07.008","title":"Direct Membrane Binding by Bacterial Actin MreB","year":2011,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":252,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Petroleum Technology Alliance Canada","keywords":"MreB; Membrane curvature; Biology; Actin; Membrane; Cytoskeleton; Cell biology; Cell membrane; Biophysics; Protein filament; Cell; Biochemistry; Lipid bilayer","score_opus":0.007749799330710829,"score_gpt":0.19131145831792623,"score_spread":0.1835616589872154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130441538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96908617,0.00029718614,0.0003252603,0.000044870052,0.0005049185,0.0001617513,0.000049727492,0.000037221605,0.029492902],"genre_scores_gemma":[0.99591297,0.00013380984,0.0013557005,0.00015444575,0.00014231369,0.000014972327,0.00026712177,0.00004991199,0.0019687712],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987813,0.000063656276,0.0002017188,0.0004779677,0.00009888959,0.00037642007],"domain_scores_gemma":[0.99930125,0.0000029017806,0.00009047752,0.00046679846,0.000035906498,0.00010267042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011115558,0.00022714099,0.00018176578,0.00004851407,0.000062229905,0.00002770693,0.00032160882,0.0004062829,0.00029312825],"category_scores_gemma":[0.000020525376,0.00022476901,0.000115673174,0.0000886064,0.000084405816,0.000001968112,0.00019301346,0.00010874759,0.000077869656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000092355396,0.00009380396,0.000056703968,0.00001047001,0.00003473368,0.000015261636,0.000019064311,5.1015377e-7,0.9961343,0.000012225431,0.002622905,0.00090766227],"study_design_scores_gemma":[0.0004110167,0.000272576,0.00002696703,0.000003344297,0.00002132984,0.0000048083125,0.0000114829245,0.0000021984092,0.8310945,0.0000067398037,0.16790159,0.00024344183],"about_ca_topic_score_codex":0.00004188141,"about_ca_topic_score_gemma":0.000007502204,"teacher_disagreement_score":0.16527867,"about_ca_system_score_codex":0.000009594332,"about_ca_system_score_gemma":0.000034557273,"threshold_uncertainty_score":0.91658145},"labels":[],"label_agreement":null},{"id":"W2130513750","doi":"10.1186/1472-6750-3-9","title":"The Flp double cross system a simple efficient procedure for cloning DNA fragments","year":2003,"lang":"en","type":"article","venue":"BMC Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Biology; Multiple cloning site; In vitro recombination; Cloning (programming); FLP-FRT recombination; Polymerase; Recombinase; Genetics; Molecular biology; Molecular cloning; DNA; Recombinant DNA; Computational biology; Vector (molecular biology); Gene; Complementary DNA; Recombination; Genetic recombination; Computer science","score_opus":0.011256428184094,"score_gpt":0.25689229508605127,"score_spread":0.24563586690195727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130513750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98053706,0.0015115413,0.015292006,0.00037612193,0.0007240686,0.0010324653,0.000038702252,0.00015791602,0.00033013878],"genre_scores_gemma":[0.9946291,0.00011208642,0.0042828056,0.000070457354,0.0001380083,0.00028458878,0.000052662886,0.000046517293,0.0003837646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981331,0.000043131608,0.00037000692,0.00065288594,0.00010447916,0.00069635257],"domain_scores_gemma":[0.99881756,0.000024690475,0.00017970675,0.0008008172,0.000114470284,0.000062764026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038932738,0.00026802288,0.00023055798,0.00007188056,0.0005324592,0.000077294426,0.0005640959,0.0012698006,0.0000039974334],"category_scores_gemma":[0.00018506791,0.0002019329,0.0001417571,0.00020876198,0.00037490207,0.0000016346128,0.00022277782,0.0001962337,0.000015567584],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029270764,0.00006970246,0.00079918327,0.000105155144,0.000067610854,0.0000014338447,0.00000863476,0.00015117782,0.96307087,0.034039963,0.00057020877,0.0008233487],"study_design_scores_gemma":[0.0013068753,0.0003711212,0.00015344471,0.000011925567,0.00001757112,0.000063469386,0.00015404787,0.00026047882,0.78656834,0.00014670257,0.21071975,0.00022625829],"about_ca_topic_score_codex":0.0000063475877,"about_ca_topic_score_gemma":0.00007546441,"teacher_disagreement_score":0.21014954,"about_ca_system_score_codex":0.00004344993,"about_ca_system_score_gemma":0.00015051157,"threshold_uncertainty_score":0.9793865},"labels":[],"label_agreement":null},{"id":"W2130636495","doi":"10.1093/nar/gkn935","title":"The global bacterial regulator H-NS promotes transpososome formation and transposition in the Tn5 system","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Tn10; Biology; Transposition (logic); Transposable element; Genetics; Gene; Bacteriophage Mu; Regulator; Footprinting; Cell biology; Repressor; Gene expression; Transcription factor; Mutant","score_opus":0.02204965054320909,"score_gpt":0.27553840934180807,"score_spread":0.253488758798599,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130636495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965377,0.00038872726,0.00005361326,0.0020628977,0.00009001834,0.00048000642,0.000042394146,0.000012937241,0.00033173905],"genre_scores_gemma":[0.9988835,0.0006369071,0.000094166295,0.000026747426,0.00021171193,0.000048853213,0.000060008235,0.000009606457,0.00002853007],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986576,0.00029375884,0.00020555308,0.00023629262,0.00025579057,0.0003510182],"domain_scores_gemma":[0.9994967,0.000021961932,0.000030095616,0.00032298247,0.00008499566,0.000043279033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068335066,0.000105977146,0.00009784521,0.00003587142,0.00045342193,0.00006625896,0.00035311625,0.0002694264,0.0000032235414],"category_scores_gemma":[0.000028528097,0.00006498106,0.000041435873,0.0002197225,0.00040601956,0.000008246566,0.000051385963,0.00018721209,0.000005688541],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040168824,0.00004847002,0.0013263082,0.00004612874,0.00001600775,0.000010998279,0.00036133066,8.5236803e-7,0.99020827,0.0020531227,0.00021061642,0.005316184],"study_design_scores_gemma":[0.0035399662,0.0032380407,0.25562513,0.00012235514,0.000030206147,0.0012245004,0.0023499033,0.00058865605,0.6240457,0.0011401713,0.10751044,0.00058489945],"about_ca_topic_score_codex":0.00002911865,"about_ca_topic_score_gemma":0.00014886497,"teacher_disagreement_score":0.36616254,"about_ca_system_score_codex":0.00004077025,"about_ca_system_score_gemma":0.00005572195,"threshold_uncertainty_score":0.3487401},"labels":[],"label_agreement":null},{"id":"W2131114832","doi":"10.1046/j.1365-2958.2003.03545.x","title":"Post‐transcriptional control of gene expression: effectors of mRNA decay","year":2003,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Fundação para a Ciência e a Tecnologia; Medical Center, University of Rochester; National Institutes of Health; Centre National de la Recherche Scientifique; École Normale Supérieure","keywords":"Biology; Messenger RNA; P-bodies; Effector; RNA splicing; Gene expression; Gene; Post-transcriptional regulation; Nonsense-mediated decay; Transcription (linguistics); Cell biology; Alternative splicing; Translation (biology); Precursor mRNA; Regulation of gene expression; Genetics; Computational biology; RNA","score_opus":0.0029502575275884907,"score_gpt":0.19089095096374709,"score_spread":0.1879406934361586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131114832","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9812816,0.002983398,0.014750912,0.000063063526,0.00028274764,0.00021829532,0.0002021676,0.000007502761,0.00021035994],"genre_scores_gemma":[0.9950291,0.00006707364,0.0044131284,0.00019132045,0.000029795981,0.000011513638,0.00019887081,0.000021804364,0.000037412305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987665,0.00021167418,0.000358058,0.00035212561,0.000046038618,0.00026561393],"domain_scores_gemma":[0.9992008,0.000013256216,0.00016930659,0.00039459372,0.00017225665,0.000049754715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017075089,0.0001915496,0.0003234141,0.000079626356,0.000027288457,0.000003007036,0.00023914524,0.0004973083,0.00006999213],"category_scores_gemma":[0.000058700472,0.00017297236,0.00019216516,0.00008139543,0.00029223482,0.000001271219,0.000040781186,0.00009323447,0.0000032148873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015250196,0.00009948554,0.0006098797,0.00002259076,0.00010477393,0.0000045385837,0.000007994543,0.000030699215,0.99752957,0.0012666206,0.00003689852,0.00013442404],"study_design_scores_gemma":[0.0011667474,0.0007256118,0.00025290155,0.000010094913,0.00003252786,0.000095289346,0.000007778477,8.6337036e-7,0.98370636,0.000032433618,0.013802896,0.00016648232],"about_ca_topic_score_codex":0.0000060889797,"about_ca_topic_score_gemma":0.0000031056695,"teacher_disagreement_score":0.01382322,"about_ca_system_score_codex":0.000006194391,"about_ca_system_score_gemma":0.00007498679,"threshold_uncertainty_score":0.7053608},"labels":[],"label_agreement":null},{"id":"W2131599797","doi":"10.1016/j.cell.2015.09.027","title":"An Interbacterial NAD(P)+ Glycohydrolase Toxin Requires Elongation Factor Tu for Delivery to Target Cells","year":2015,"lang":"en","type":"article","venue":"Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":269,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; National Institute of Biomedical Imaging and Bioengineering; Howard Hughes Medical Institute","keywords":"Biology; Elongation; Toxin; Elongation factor; NAD+ kinase; Molecular biology; Cell biology; Genetics; Biochemistry; Gene; Enzyme; RNA","score_opus":0.014006119453291109,"score_gpt":0.24155293884104304,"score_spread":0.22754681938775193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131599797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933897,0.00008612815,0.004488964,0.00013886375,0.0011210111,0.00037017447,0.00025316447,0.000027109214,0.00012484129],"genre_scores_gemma":[0.9910913,0.000020228525,0.006866675,0.0003189263,0.00077783497,0.00003512628,0.0004458451,0.000031248426,0.00041282905],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99899584,0.000039728006,0.00020782906,0.00040214532,0.00007432314,0.0002801225],"domain_scores_gemma":[0.99920243,0.0000055145856,0.000070215974,0.00037684795,0.00013102565,0.0002139857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011061255,0.0001706053,0.00014708047,0.000052294796,0.000044280114,0.000052255262,0.00028007626,0.0003220061,0.00002472503],"category_scores_gemma":[0.000034168304,0.00016541823,0.00006476684,0.000056231875,0.00004058285,0.0000065776817,0.00011205908,0.00005410997,0.0000335065],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047411583,0.00008231649,0.000022317281,0.000010414988,0.000010337259,0.0000020502848,0.00006857266,0.00003713222,0.994728,0.000004934094,0.0028010462,0.0017587394],"study_design_scores_gemma":[0.0006285078,0.0014879019,0.000036631944,0.000003230708,0.0000074270347,0.0000028513205,0.00003377081,0.00009702109,0.8276289,0.000057162182,0.16982472,0.00019184576],"about_ca_topic_score_codex":0.000021623111,"about_ca_topic_score_gemma":0.000034215573,"teacher_disagreement_score":0.16709909,"about_ca_system_score_codex":0.000023089866,"about_ca_system_score_gemma":0.00008721886,"threshold_uncertainty_score":0.67455596},"labels":[],"label_agreement":null},{"id":"W2131802429","doi":"10.1021/bi702138a","title":"Identification of Residues in DmsD for Twin-Arginine Leader Peptide Binding, Defined through Random and Bioinformatics-Directed Mutagenesis","year":2008,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of Calgary","funders":"University of Calgary","keywords":"Translocase; Biochemistry; Peptide sequence; Signal peptide; Mutagenesis; Biology; Amino acid; Peptide; Twin-arginine translocation pathway; Consensus sequence; Molecular biology; Mutant; Gene; Chromosomal translocation","score_opus":0.01434243443998734,"score_gpt":0.24245662053277986,"score_spread":0.22811418609279252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131802429","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99781007,0.0010248479,0.0004568624,0.00014114846,0.00007311341,0.0002595721,0.00010271193,0.0000241449,0.0001075321],"genre_scores_gemma":[0.99321157,0.0010487295,0.0045231967,0.00003599633,0.00009307111,0.000045426885,0.00032048693,0.000019886942,0.0007016491],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989153,0.0000138511095,0.0004677626,0.00030204607,0.00008133865,0.00021971452],"domain_scores_gemma":[0.9993162,0.000021048105,0.00021126911,0.0003192197,0.00009477164,0.00003746913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014572391,0.00017078461,0.00023866298,0.00005456015,0.00006313923,0.000010793013,0.00015890859,0.0003691973,0.0000062069034],"category_scores_gemma":[0.00021411314,0.00016793642,0.000072449126,0.0001338304,0.00023051875,0.0000050830167,0.00007985066,0.00006001618,0.0000015410127],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021172149,0.000049591454,0.0022751323,0.0001255549,0.00003389984,0.0000010299626,0.00007715559,0.0000021749433,0.99580973,0.0000049003484,0.0009922035,0.00041687422],"study_design_scores_gemma":[0.0017678612,0.000102410246,0.0028105793,0.000024751269,0.000019890795,0.000027884125,0.00009845311,0.000084778374,0.99342144,0.000025920383,0.0014250876,0.00019096673],"about_ca_topic_score_codex":0.000018609837,"about_ca_topic_score_gemma":0.000012558406,"teacher_disagreement_score":0.0045985105,"about_ca_system_score_codex":0.0000115530975,"about_ca_system_score_gemma":0.00007165653,"threshold_uncertainty_score":0.6848248},"labels":[],"label_agreement":null},{"id":"W2132162611","doi":"10.1111/j.1365-2958.2007.05708.x","title":"The global regulator H‐NS binds to two distinct classes of sites within the Tn10 transpososome to promote transposition","year":2007,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Tn10; Transposase; Biology; Transposable element; Tn3 transposon; Transposition (logic); P element; Cell biology; DNA; Bacteriophage Mu; Genetics; Mutant; Gene","score_opus":0.004321060174256273,"score_gpt":0.23458628756989325,"score_spread":0.23026522739563698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132162611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871061,0.0006083614,0.007849985,0.003167443,0.00029293413,0.0005965433,0.00022927893,0.000020774782,0.0001286183],"genre_scores_gemma":[0.9967563,0.00001996019,0.0018610898,0.0009641785,0.00010543397,0.000021460051,0.00019446484,0.00002513569,0.00005198064],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983899,0.0001157503,0.00044747436,0.0004877343,0.000071317714,0.00048784266],"domain_scores_gemma":[0.9989867,0.000019286997,0.00012205171,0.00062865845,0.00013395035,0.00010935344],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000464451,0.00025737367,0.00023764749,0.000047461246,0.00016997232,0.00002423031,0.0006271765,0.00034922996,0.0000043932837],"category_scores_gemma":[0.000048492573,0.00016646666,0.00015815854,0.0003335797,0.00033355382,0.000002173352,0.0001305289,0.00013308736,0.000009409866],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041549143,0.00005119472,0.0004255105,0.000008354484,0.000090130176,0.000007410579,0.000060888407,0.00006630039,0.9949817,0.0021135604,0.000116662006,0.0016627872],"study_design_scores_gemma":[0.0003937244,0.0009705512,0.002491698,0.000012937272,0.000043648964,0.00008733254,0.000037126592,0.0000034318268,0.96129096,0.00045436094,0.0339956,0.00021863836],"about_ca_topic_score_codex":0.00003137637,"about_ca_topic_score_gemma":0.0011472208,"teacher_disagreement_score":0.033878937,"about_ca_system_score_codex":0.000029355226,"about_ca_system_score_gemma":0.000061468636,"threshold_uncertainty_score":0.67883134},"labels":[],"label_agreement":null},{"id":"W2132170905","doi":"10.1128/aem.02178-10","title":"Role of the Cell Wall Microenvironment in Expression of a Heterologous SpaP-S1 Fusion Protein by <i>Streptococcus gordonii</i>","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Streptococcus gordonii; Heterologous; Biology; Fusion protein; Cell biology; Cell fusion; Protein expression; Cell; Microbiology; Streptococcus; Bacteria; Genetics; Recombinant DNA; Gene","score_opus":0.0009848015211007099,"score_gpt":0.13714071118325805,"score_spread":0.13615590966215735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132170905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988631,0.00037277184,0.000003258975,0.00005512751,0.00004096256,0.0004518778,0.0001284049,0.0000024788255,0.00008199537],"genre_scores_gemma":[0.9991537,0.00022187842,0.00020237706,0.00009365637,0.000016982149,0.00003918358,0.00021253445,0.0000145502645,0.000045154542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991037,0.00003243512,0.00026416712,0.00035152276,0.00003065218,0.00021747548],"domain_scores_gemma":[0.99946636,0.0000043468913,0.0001609696,0.000335633,0.0000016089213,0.000031084834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059722857,0.00016972324,0.00019348873,0.00002290365,0.000035622208,0.0000023911227,0.00022650418,0.00042560155,0.000041017367],"category_scores_gemma":[0.0000015422053,0.00012742287,0.00005109303,0.000024479481,0.00049285224,0.0000012774018,0.00044731412,0.0001800018,0.0000033588765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000067479494,0.0002128368,0.004753019,0.000011366382,0.00000572935,1.5894945e-7,0.00002730789,0.0000022699332,0.9936781,0.0000048691795,0.00006087794,0.0011759875],"study_design_scores_gemma":[0.0006551041,0.00022839113,0.0043879417,0.00000565869,0.0000064358687,0.0000067994647,0.00005618528,0.0000010482926,0.97779983,0.000034589393,0.016696056,0.000121960096],"about_ca_topic_score_codex":0.000018643232,"about_ca_topic_score_gemma":0.000024998708,"teacher_disagreement_score":0.01663518,"about_ca_system_score_codex":0.0000073842534,"about_ca_system_score_gemma":0.000007277469,"threshold_uncertainty_score":0.5196154},"labels":[],"label_agreement":null},{"id":"W2132458820","doi":"10.1186/1471-2180-9-72","title":"Statistical characterization of the GxxxG glycine repeats in the flagellar biosynthesis protein FliH and its Type III secretion homologue YscL","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; GenBank; Phylogenetic tree; Flagellum; Amino acid; Peptide sequence; Sequence alignment; Glycine; Multiple sequence alignment; Genetics; Biochemistry; Gene","score_opus":0.007925763628588421,"score_gpt":0.21176943205369977,"score_spread":0.20384366842511134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132458820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998112,0.00026644298,0.000264232,0.00070808746,0.00009943928,0.00043328453,0.0000832369,0.0000058151472,0.00002746093],"genre_scores_gemma":[0.99875176,0.00021308172,0.00027013948,0.000272739,0.00007498767,0.000007583789,0.00032793,0.0000074588925,0.00007431119],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989941,0.00024667202,0.0002515131,0.00028664086,0.00002913978,0.00019190488],"domain_scores_gemma":[0.9994888,0.00001630433,0.00012475178,0.00029678855,0.000056285226,0.000017070319],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023588815,0.0001319034,0.00017225902,0.00003980856,0.00005211498,0.0000082235365,0.00023375764,0.000371674,0.000014350843],"category_scores_gemma":[0.00013214147,0.000082469356,0.000033323588,0.00013129253,0.00014473754,0.0000019211286,0.00008832686,0.00010646097,0.0000026133662],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015292513,0.00004637032,0.0002652136,0.000013305918,0.000007695541,0.0000013723015,0.000026987258,5.3046955e-7,0.9982659,0.00037314292,0.000033313612,0.0008132063],"study_design_scores_gemma":[0.00036431768,0.0005350187,0.030336743,0.000018731736,0.000015549203,0.00006215833,0.000016666769,0.00001550145,0.96393365,0.00010228967,0.004488333,0.00011106683],"about_ca_topic_score_codex":0.000007765757,"about_ca_topic_score_gemma":0.000050598053,"teacher_disagreement_score":0.034332313,"about_ca_system_score_codex":0.000006573982,"about_ca_system_score_gemma":0.00004465881,"threshold_uncertainty_score":0.33630028},"labels":[],"label_agreement":null},{"id":"W2132626965","doi":"10.1186/s12859-015-0720-z","title":"PROKARYO: an illustrative and interactive computational model of the lactose operon in the bacterium Escherichia coli","year":2015,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Operon; Computational biology; Computer science; Biological system; Biology; Escherichia coli; Gene; Genetics","score_opus":0.031199008765802526,"score_gpt":0.2582938359164607,"score_spread":0.22709482715065818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132626965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926755,0.000023632068,0.0063164295,0.00018468623,0.00006914034,0.00030076358,0.000046332705,0.000003541068,0.0003799675],"genre_scores_gemma":[0.9703038,0.000012051753,0.029291825,0.00026314927,0.000023871631,0.000011064671,0.00005536135,0.0000058424494,0.000033041968],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9993872,0.00006314663,0.00023642743,0.000096197655,0.00010118215,0.000115829505],"domain_scores_gemma":[0.99950814,0.000011218877,0.00013217355,0.00022125978,0.00009279838,0.000034429853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020563015,0.00010452416,0.000103292405,0.00002259219,0.00003352495,0.000028569804,0.00025052202,0.00014479413,9.998016e-7],"category_scores_gemma":[0.00005297055,0.00006091234,0.000026676453,0.00008136018,0.00018528244,0.000013753038,0.0001532429,0.00011219071,7.8351627e-7],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020648795,0.0014274856,0.018880803,0.00043053352,0.00022667798,0.0000016424226,0.040411483,0.11648917,0.7994555,0.00678611,0.0025989988,0.011226663],"study_design_scores_gemma":[0.0015494426,0.0010745203,0.01788743,0.000031773045,0.000027006326,0.000021730752,0.007390656,0.91360176,0.05571942,0.0008836778,0.0015034742,0.00030911068],"about_ca_topic_score_codex":0.000011572643,"about_ca_topic_score_gemma":0.00010480058,"teacher_disagreement_score":0.7971126,"about_ca_system_score_codex":0.000009356184,"about_ca_system_score_gemma":0.00016812167,"threshold_uncertainty_score":0.24839331},"labels":[],"label_agreement":null},{"id":"W2132920461","doi":"10.1128/jb.183.8.2543-2552.2001","title":"Characterization of the <i>sat</i> Operon in <i>Streptococcus mutans</i> : Evidence for a Role of Ffh in Acid Tolerance","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Dental and Craniofacial Research; National Institutes of Health; University of Toronto; University of South Florida","keywords":"Operon; Biology; Mutant; L-arabinose operon; Genetics; Gene; gal operon; Locus (genetics); Promoter; Molecular biology; Gene expression","score_opus":0.012835322570347635,"score_gpt":0.24992986885936788,"score_spread":0.23709454628902024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132920461","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99819267,0.00067277905,0.00010035112,0.00048170006,0.00025787365,0.0002589822,0.000021404205,9.889707e-7,0.000013259581],"genre_scores_gemma":[0.99853325,0.00094631966,0.0002130241,0.00012825035,0.00013083257,0.000012283309,0.000012268646,0.000010149054,0.00001359417],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987877,0.00010047713,0.00070210185,0.00016196021,0.000063409105,0.00018435213],"domain_scores_gemma":[0.9989179,0.000022764474,0.0006186172,0.00023797058,0.00017781697,0.000024978033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031374913,0.000115625604,0.00036370696,0.00009043386,0.0000136092485,0.0000044767103,0.00037368754,0.0002833888,0.000008944053],"category_scores_gemma":[0.0001691246,0.00008632976,0.00010853569,0.00019535355,0.00013006778,0.000010124939,0.00009590866,0.00013490029,2.1355375e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007014967,0.00007861335,0.054964494,0.000021307227,0.000014830024,0.0000016114991,0.000052011314,0.0000168056,0.94157356,0.000011741741,0.000006333742,0.0025572083],"study_design_scores_gemma":[0.00076476217,0.00077176356,0.13635685,0.00012931747,0.000011773808,0.000055480592,0.000029305722,0.000020592963,0.8563904,0.000058159363,0.0053372663,0.0000743397],"about_ca_topic_score_codex":0.000015694624,"about_ca_topic_score_gemma":0.00016023986,"teacher_disagreement_score":0.08518316,"about_ca_system_score_codex":0.000016384061,"about_ca_system_score_gemma":0.00013328882,"threshold_uncertainty_score":0.35204253},"labels":[],"label_agreement":null},{"id":"W2132928915","doi":"10.1074/jbc.m708894200","title":"Flagellin Glycosylation in Pseudomonas aeruginosa PAK Requires the O-antigen Biosynthesis Enzyme WbpO","year":2007,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Institute for Biological Sciences; University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Flagellin; Glycosylation; Mutant; Biochemistry; Pseudomonas aeruginosa; Glycan; Biology; Chemistry; Microbiology; Molecular biology; Bacteria; Gene; Glycoprotein","score_opus":0.01640336936295194,"score_gpt":0.24910821704071626,"score_spread":0.2327048476777643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132928915","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966046,0.0014020838,0.0005215201,0.0007482877,0.0001585764,0.00007617827,0.0000074745353,0.0000066823823,0.0004745863],"genre_scores_gemma":[0.9968865,0.0014476948,0.0007052494,0.00015523545,0.0007216198,0.0000014973928,0.000016862461,0.000010017574,0.000055319593],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99861217,0.000058993824,0.00061820704,0.0002403771,0.0001436638,0.00032657286],"domain_scores_gemma":[0.9991014,0.000073880634,0.0003685541,0.0002641952,0.00010741596,0.000084534564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010554435,0.00018177718,0.00024905207,0.000040378163,0.000058388112,0.000023552822,0.00046474233,0.0006358132,0.00006437346],"category_scores_gemma":[0.00037303605,0.0001094027,0.0001774172,0.00012204799,0.00022491196,0.0000038486696,0.0001270256,0.0003110962,0.0000039768306],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029833545,0.00007812086,0.0042479457,0.000006823821,0.000031487372,0.000031505562,0.000009559768,0.00000960904,0.9898195,0.000018422135,0.00015214174,0.0052965074],"study_design_scores_gemma":[0.00033612762,0.0002249859,0.013213208,0.000018590097,0.00000935689,0.0001493567,0.00007478798,0.0000056994563,0.9600951,0.0002108841,0.025512645,0.00014927154],"about_ca_topic_score_codex":0.000006408196,"about_ca_topic_score_gemma":0.000011892585,"teacher_disagreement_score":0.029724455,"about_ca_system_score_codex":0.000027120399,"about_ca_system_score_gemma":0.000053086824,"threshold_uncertainty_score":0.4903974},"labels":[],"label_agreement":null},{"id":"W2133276616","doi":"10.1139/w09-016","title":"Global responses of<i>Escherichia coli</i>to adverse conditions determined by microarrays and FT-IR spectroscopy","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Wellcome Trust","keywords":"Benzalkonium chloride; Chemistry; Escherichia coli; Gene expression; Ethidium bromide; Biochemistry; Sodium; Gene; Molecular biology; Biology; Chromatography; DNA; Organic chemistry","score_opus":0.004467555490571731,"score_gpt":0.22030045632546555,"score_spread":0.21583290083489381,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133276616","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960011,0.0010054136,0.00019623096,0.0016384276,0.0002462339,0.00010608503,0.00073628314,0.0000021534659,0.00006801952],"genre_scores_gemma":[0.99466145,0.00013758928,0.003546644,0.0014340327,0.000081543694,8.3326216e-7,0.000060739734,0.000007557871,0.00006958123],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990763,0.00007421721,0.000326816,0.00019032665,0.000019571753,0.00031274656],"domain_scores_gemma":[0.99920696,0.00000823547,0.00017888726,0.00017129205,0.00012660131,0.00030804868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012580928,0.00014633244,0.0002598012,0.00010845663,0.00006386622,0.00000997436,0.00020545376,0.00030380412,0.00002697584],"category_scores_gemma":[0.00008329733,0.00014169374,0.00007668591,0.00011639798,0.0002571618,0.000002804278,0.000021893124,0.00009469072,0.0000023938687],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016699884,0.000015789246,0.0015356401,0.0000023272512,0.000037738882,0.000020827585,0.000016758084,0.0000017417857,0.98084885,0.000036878486,0.017111547,0.00020487841],"study_design_scores_gemma":[0.0005992115,0.0019969067,0.008384728,0.000015217833,0.000029745663,0.0006315541,0.000041573177,2.3287814e-7,0.8820409,0.00008124188,0.106015794,0.000162865],"about_ca_topic_score_codex":0.00017794449,"about_ca_topic_score_gemma":0.003348543,"teacher_disagreement_score":0.098807946,"about_ca_system_score_codex":0.00003696795,"about_ca_system_score_gemma":0.00064653537,"threshold_uncertainty_score":0.57781035},"labels":[],"label_agreement":null},{"id":"W2133342418","doi":"10.1128/jb.00798-08","title":"Characterization of the Cpx Regulon in<i>Escherichia coli</i>Strain MC4100","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":226,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Directorate for Biological Sciences; Fondation pour la Recherche Médicale; University of Alberta","keywords":"Regulon; Biology; Operon; Gene; Genetics; Escherichia coli; Cell biology","score_opus":0.008900290225176485,"score_gpt":0.21086929263502072,"score_spread":0.20196900240984422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133342418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983132,0.000099152276,0.000078795216,0.0007010041,0.00061503804,0.00009967302,0.00002303623,0.0000020039226,0.00006808801],"genre_scores_gemma":[0.9983747,0.0006681093,0.0002998631,0.00025707606,0.00026278134,0.0000020923621,0.000019990808,0.000012758355,0.00010265119],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988785,0.00015070349,0.0005700117,0.00014157734,0.00007942351,0.00017982617],"domain_scores_gemma":[0.99898803,0.000008406735,0.00058550044,0.00025052627,0.00012925279,0.0000382694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023414067,0.0001221421,0.00030092528,0.00007711251,0.00003818766,0.000003964703,0.00034276317,0.00034418795,0.000021985034],"category_scores_gemma":[0.00007887244,0.000087261535,0.00012914173,0.00014598688,0.0002565395,0.0000050110357,0.00010666354,0.00019988297,0.0000011052148],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017895765,0.0000641539,0.008273759,0.000007834736,0.000028525075,0.0000066498133,0.000046516263,0.0000047180515,0.9907182,0.000029102377,0.00005226448,0.0005893097],"study_design_scores_gemma":[0.0005042119,0.00052505854,0.3659083,0.000016639342,0.000008752617,0.00024757066,0.000011451403,0.0000029445907,0.6179917,0.000031949243,0.014674281,0.00007719731],"about_ca_topic_score_codex":0.000006193905,"about_ca_topic_score_gemma":0.000016817969,"teacher_disagreement_score":0.37272656,"about_ca_system_score_codex":0.000014518901,"about_ca_system_score_gemma":0.00017052233,"threshold_uncertainty_score":0.3558422},"labels":[],"label_agreement":null},{"id":"W2133672070","doi":"10.1128/jb.00579-08","title":"Biosynthesis of a Rare Di-N-Acetylated Sugar in the Lipopolysaccharides of both <i>Pseudomonas aeruginosa</i> and <i>Bordetella pertussis</i> Occurs via an Identical Scheme despite Different Gene Clusters","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council; University of Oklahoma","keywords":"Bordetella pertussis; Biology; Pseudomonas aeruginosa; Gene cluster; Microbiology; Gene; Mutant; Biochemistry; Complementation; Dehydrogenase; Enzyme; Genetics; Bacteria","score_opus":0.011133524891122801,"score_gpt":0.22747160753336523,"score_spread":0.21633808264224244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133672070","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99783975,0.0011192284,0.00021473914,0.00046244383,0.00018354737,0.00014408225,0.00002734732,0.0000032343398,0.0000055999494],"genre_scores_gemma":[0.9948675,0.003563391,0.0011809103,0.00021195838,0.00013318124,0.0000032434514,0.000015929492,0.000019237365,0.0000046490436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981173,0.00029509192,0.0008785034,0.00027076286,0.0001442539,0.00029408833],"domain_scores_gemma":[0.99872726,0.000065978405,0.00061247475,0.00036071427,0.00013864311,0.00009490212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036523415,0.000241829,0.0006250094,0.00016955195,0.000054504133,0.000011689054,0.000470625,0.0004402871,0.000010801409],"category_scores_gemma":[0.000119784345,0.0001628613,0.00017393593,0.00013718521,0.0006312205,0.000011210766,0.00016512902,0.00023961905,2.9598667e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006525415,0.00021375176,0.021847384,0.000026493362,0.00010737906,0.000028351138,0.00019532899,0.0000045607517,0.97562885,0.000008965207,0.00003120024,0.001255168],"study_design_scores_gemma":[0.0012160537,0.002588241,0.07549521,0.00004228171,0.000072619885,0.0013834812,0.00017428712,0.000056600282,0.9180463,0.00003887572,0.0006670713,0.0002189764],"about_ca_topic_score_codex":0.000053327978,"about_ca_topic_score_gemma":0.00006145626,"teacher_disagreement_score":0.057582576,"about_ca_system_score_codex":0.000012462494,"about_ca_system_score_gemma":0.00008013434,"threshold_uncertainty_score":0.66412914},"labels":[],"label_agreement":null},{"id":"W2133701178","doi":"10.1016/j.pep.2007.06.009","title":"Production and purification of the bacterial autolysin N-acetylmuramoyl-l-alanine amidase B from Pseudomonas aeruginosa","year":2007,"lang":"en","type":"article","venue":"Protein Expression and Purification","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Peptidoglycan; Amidase; Biochemistry; Autolysin; Periplasmic space; Escherichia coli; Alanine; Chemistry; Amidohydrolase; Biology; Cell wall; Enzyme; Amino acid; Gene","score_opus":0.008437697711413696,"score_gpt":0.22410457576560683,"score_spread":0.21566687805419313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133701178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966962,0.00050585956,0.0010465436,0.0008769432,0.00021951448,0.0005746875,0.000023760447,0.000016773138,0.000039765288],"genre_scores_gemma":[0.9960959,0.00022753289,0.003006507,0.00002094512,0.00028191588,0.000036111924,0.00013546675,0.000012338186,0.00018329803],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901235,0.00007603214,0.00027983138,0.00038363523,0.00011053954,0.00013760163],"domain_scores_gemma":[0.9992038,0.0000069148387,0.00023907512,0.00041887088,0.00008142618,0.000049918202],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028330187,0.00013177368,0.00011788719,0.00004011566,0.00011558423,0.000026140038,0.00012966697,0.00026773347,0.000013600458],"category_scores_gemma":[0.00011147697,0.00009726147,0.000031467534,0.000093230556,0.00016855873,0.000008586981,0.00009625767,0.000093602444,0.0000011477813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018998147,0.000050477178,0.00073976524,0.000017125514,0.000008131927,1.0255965e-7,0.000061580395,5.200773e-7,0.9835227,0.0001051004,0.000081865684,0.015222639],"study_design_scores_gemma":[0.00027761818,0.000081907085,0.030547768,0.000045358647,0.000012455786,0.0000049568453,0.00004632414,0.000015699658,0.96018034,0.00017161536,0.008501409,0.00011452639],"about_ca_topic_score_codex":0.000027642443,"about_ca_topic_score_gemma":0.00001719423,"teacher_disagreement_score":0.029808002,"about_ca_system_score_codex":0.0000066146495,"about_ca_system_score_gemma":0.00002285404,"threshold_uncertainty_score":0.39662075},"labels":[],"label_agreement":null},{"id":"W2134174762","doi":"10.1128/aem.00413-10","title":"Novel, Versatile, and Tightly Regulated Expression System for <i>E</i> <i>scherichia coli</i> Strains","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Biotechnology Research Institute; McGill University","funders":"","keywords":"lac operon; Lac repressor; Inducer; Repressor; Operon; Pseudomonas putida; Escherichia coli; Population; Biology; Gene expression; Gene; Molecular biology; Regulation of gene expression; Chemistry; Genetics","score_opus":0.0028943407595774613,"score_gpt":0.16316162290852773,"score_spread":0.16026728214895028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134174762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99847037,0.00013973436,0.00033941216,0.00006601353,0.00020118804,0.00033327777,0.00030806978,0.00001755839,0.00012435135],"genre_scores_gemma":[0.9949482,0.00011851781,0.003827943,0.00019066701,0.00012288905,0.000040987834,0.0006703802,0.00002238588,0.000058049136],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991493,0.000008704494,0.00015709449,0.00042963354,0.000017295866,0.00023792985],"domain_scores_gemma":[0.99965596,0.000007167397,0.00006847513,0.00019788841,0.0000035375788,0.000066940986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006511694,0.00018010598,0.00016834387,0.000019418749,0.00011295043,0.000013553919,0.000100154255,0.00049396924,0.000008126644],"category_scores_gemma":[0.000002206596,0.00016060218,0.000029588598,0.000017880548,0.000335518,0.000001753933,0.00016662038,0.00011304208,0.0000023442403],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007436445,0.00003909465,0.00011629485,0.000018259034,0.000023201153,2.7987141e-7,0.000015285108,6.171564e-7,0.9981201,0.00024084181,0.00019009992,0.0011615556],"study_design_scores_gemma":[0.0011044053,0.00020812008,0.001589033,0.000003741489,0.000018394288,0.00008264817,0.00009716733,0.0000071234776,0.9390923,0.000015381085,0.057585593,0.00019610253],"about_ca_topic_score_codex":0.0000035645703,"about_ca_topic_score_gemma":0.000008764031,"teacher_disagreement_score":0.059027817,"about_ca_system_score_codex":0.000005940574,"about_ca_system_score_gemma":0.000009210709,"threshold_uncertainty_score":0.65491664},"labels":[],"label_agreement":null},{"id":"W2134182367","doi":"10.1128/jb.00590-09","title":"An A257V Mutation in the <i>Bacillus subtilis</i> Response Regulator Spo0A Prevents Regulated Expression of Promoters with Low-Consensus Binding Sites","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Promoter; Biology; Transcription (linguistics); Transcription factor; Mutant; Bacillus subtilis; Response element; DNA-binding protein; Consensus sequence; Binding site; Molecular biology; Cell biology; Genetics; Gene; Gene expression; Peptide sequence","score_opus":0.006753868291746717,"score_gpt":0.23522251519167442,"score_spread":0.2284686468999277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134182367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99893105,0.000099827485,0.000033938722,0.000614759,0.000102365535,0.0001954235,0.000012463808,0.0000040941927,0.0000060698458],"genre_scores_gemma":[0.99846274,0.00004182678,0.0012187628,0.000110005196,0.00009895193,0.00000192344,0.00003853346,0.000011943523,0.000015324118],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833256,0.00053672015,0.00055776077,0.0002232043,0.00012476744,0.00022497536],"domain_scores_gemma":[0.9988014,0.000033955068,0.0006199449,0.00034885603,0.00014138772,0.000054426553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085061265,0.00016631527,0.000306989,0.00016785385,0.000041732077,0.000016743948,0.00033703615,0.00034905007,0.000008143325],"category_scores_gemma":[0.000102390295,0.0001065354,0.000075559496,0.00014923405,0.00016048296,0.000009480175,0.000028356544,0.00018947359,5.023313e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006205174,0.00016218911,0.0011981007,0.000009112416,0.000020906442,0.00005401525,0.00017540304,0.000061135994,0.9902411,0.0000034384889,0.00004320485,0.0018262118],"study_design_scores_gemma":[0.0012193633,0.0060379696,0.11654099,0.00007652788,0.00002146382,0.000787264,0.0001509935,0.000016490258,0.874588,0.00006362786,0.00037105064,0.00012623977],"about_ca_topic_score_codex":0.0000026843527,"about_ca_topic_score_gemma":0.000008213641,"teacher_disagreement_score":0.11565308,"about_ca_system_score_codex":0.00001915833,"about_ca_system_score_gemma":0.00011183251,"threshold_uncertainty_score":0.43443877},"labels":[],"label_agreement":null},{"id":"W2134228865","doi":"10.1016/s0196-9781(01)00494-6","title":"A two-component signal-transduction cascade in Carnobacterium piscicola LV17B: two signaling peptides and one sensor-transmitter","year":2001,"lang":"en","type":"article","venue":"Peptides","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta","keywords":"Bacteriocin; Signal transduction; Quorum sensing; Peptide; Cell biology; Transduction (biophysics); Operon; Biology; Bacteria; Biochemistry; Chemistry; Gene; Genetics; Biofilm; Escherichia coli","score_opus":0.012058732933550526,"score_gpt":0.23899378053550607,"score_spread":0.22693504760195554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134228865","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997414,0.000607408,0.00038220358,0.00082782283,0.00016575388,0.00028474748,0.000018559664,0.000036003425,0.00026349697],"genre_scores_gemma":[0.99533105,0.0007775787,0.0027094122,0.00025888893,0.00058042485,0.000032339758,0.000066752946,0.000041079373,0.0002024497],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982844,0.00009779027,0.00037090044,0.000600967,0.00013416902,0.0005117888],"domain_scores_gemma":[0.99943805,0.000016266504,0.00008757599,0.000284575,0.000058780137,0.0001147797],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024619533,0.000287199,0.00029359027,0.00013758201,0.000096493895,0.00006834509,0.00016500246,0.00025960788,0.000056854158],"category_scores_gemma":[0.00001248655,0.0002888676,0.00009414847,0.00015804681,0.0001916232,0.000010454403,0.00008143191,0.00021915004,0.000009620302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019040646,0.00010174679,0.010111908,0.00002874707,0.000049998518,0.000020975642,0.00016213748,0.00011550217,0.9858207,0.000028676313,0.000025022113,0.0033441621],"study_design_scores_gemma":[0.0014794474,0.00033962613,0.016903285,0.000068304194,0.00004505959,0.00015636015,0.00024181519,0.000099974655,0.97054094,0.00020508947,0.009446817,0.0004732832],"about_ca_topic_score_codex":0.00046258263,"about_ca_topic_score_gemma":0.0008300059,"teacher_disagreement_score":0.01527978,"about_ca_system_score_codex":0.000027271426,"about_ca_system_score_gemma":0.000042761723,"threshold_uncertainty_score":0.99995637},"labels":[],"label_agreement":null},{"id":"W2134236489","doi":"10.1128/jb.183.24.7154-7164.2001","title":"Characterization of Flagellum Gene Families of Methanogenic Archaea and Localization of Novel Flagellum Accessory Proteins","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"National Research Council Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Methanococcus; Biology; Flagellum; Flagellin; Gene; Conserved sequence; Genetics; Peptide sequence; Cell biology; Archaea","score_opus":0.01322155016808831,"score_gpt":0.23647315503551117,"score_spread":0.22325160486742285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134236489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97688603,0.00035329864,0.022244891,0.00007707865,0.00021101457,0.00016045505,0.000047389036,0.0000021795267,0.000017668126],"genre_scores_gemma":[0.9933116,0.004115587,0.0022767612,0.000034014385,0.00014639742,0.000002501179,0.0000680301,0.000016324024,0.000028776567],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986478,0.000099930265,0.0008174917,0.00017557705,0.00009878451,0.00016040805],"domain_scores_gemma":[0.9981806,0.000014839292,0.0011621127,0.000219616,0.00037477384,0.00004801164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031482833,0.0001470449,0.00048167506,0.0002105815,0.000021243894,0.000004214989,0.0002316987,0.00037063047,0.000016614145],"category_scores_gemma":[0.00010432481,0.0001287245,0.00011104421,0.00014900816,0.0003633098,0.000010686112,0.00015036935,0.000101322395,1.6365212e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042838472,0.00014104269,0.0042186556,0.0000757429,0.00012159635,0.0000020690743,0.00007383318,0.000027302205,0.992099,0.000026066495,0.0000022826407,0.0027840193],"study_design_scores_gemma":[0.0008292979,0.0014877835,0.022322148,0.000038900955,0.000052693234,0.0001603645,0.000041478623,0.00007016408,0.9730392,0.000038838385,0.0018146797,0.0001044654],"about_ca_topic_score_codex":0.000014234769,"about_ca_topic_score_gemma":0.000012896011,"teacher_disagreement_score":0.01996813,"about_ca_system_score_codex":0.000007200515,"about_ca_system_score_gemma":0.000094582436,"threshold_uncertainty_score":0.52492326},"labels":[],"label_agreement":null},{"id":"W2134459596","doi":"10.1007/s00203-013-0909-3","title":"The influence of CsgD on the expression of genes of folate metabolism and hmp in Escherichia coli K-12","year":2013,"lang":"en","type":"article","venue":"Archives of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Chemical Sciences, Geosciences, and Biosciences Division","keywords":"Gene; Biology; Operon; Gene expression; Escherichia coli; Biofilm; Microbiology; Cell biology; Regulation of gene expression; Biochemistry; Bacteria; Genetics","score_opus":0.004382727211766741,"score_gpt":0.19344552322935454,"score_spread":0.1890627960175878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134459596","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99778515,0.001695705,0.000008469607,0.00018579037,0.00003556156,0.00019327272,0.000030390249,0.0000010806253,0.00006460581],"genre_scores_gemma":[0.99681485,0.0025404247,0.00055110565,0.000038143953,0.000011003349,0.0000098244045,0.000008154733,0.0000059024132,0.000020610662],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992512,0.00013037105,0.00030783354,0.00015374421,0.000019717436,0.00013714298],"domain_scores_gemma":[0.9992955,0.000113932634,0.0002431398,0.00029935216,0.000034396864,0.000013700393],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001071943,0.000094960145,0.00021376075,0.00003949636,0.000023427463,0.0000017475339,0.00029567655,0.00013517696,0.0000036884776],"category_scores_gemma":[0.00006345236,0.000053531876,0.00005054523,0.000041214906,0.00084005535,0.0000013967543,0.0002516855,0.00007334255,3.0797509e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012602276,0.00003665157,0.001562352,0.000018034532,0.00002696152,5.5137573e-8,0.00007616524,0.000017549044,0.99544436,0.00047962798,0.00001726453,0.0021949427],"study_design_scores_gemma":[0.00025651872,0.00034232388,0.049360473,0.000025504576,0.000006702457,0.0000017378362,0.00004999507,0.000003552921,0.9477275,0.0006672589,0.0015084791,0.000049947143],"about_ca_topic_score_codex":0.00009296925,"about_ca_topic_score_gemma":0.000041219046,"teacher_disagreement_score":0.047798123,"about_ca_system_score_codex":6.1146716e-7,"about_ca_system_score_gemma":0.000024503612,"threshold_uncertainty_score":0.30952188},"labels":[],"label_agreement":null},{"id":"W2134632463","doi":"10.1534/genetics.110.119438","title":"Bacterial DNA Uptake Sequences Can Accumulate by Molecular Drive Alone","year":2010,"lang":"en","type":"article","venue":"Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genetics; DNA; Computational biology","score_opus":0.0069121339547504644,"score_gpt":0.23122214616571776,"score_spread":0.2243100122109673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134632463","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968984,0.00030079894,0.00024388956,0.0007076596,0.0011404728,0.00022853624,0.00017332178,0.00003607909,0.00027080777],"genre_scores_gemma":[0.9918906,0.00036571219,0.005946249,0.00040964098,0.0005209103,0.0000187562,0.0005479789,0.00005106381,0.00024909957],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840814,0.00004014957,0.00031412923,0.0005817209,0.00015584951,0.00050004135],"domain_scores_gemma":[0.99888116,0.000004941295,0.00012337812,0.0007086441,0.00011012116,0.00017176532],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00011893852,0.0002971717,0.00022532487,0.00004816512,0.00009986382,0.00007533115,0.0005255743,0.00069428526,0.00011392331],"category_scores_gemma":[0.000046555466,0.00029334347,0.000104720035,0.0001123423,0.00027285665,0.0000020182001,0.00026952798,0.00024653928,0.000024191066],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003056645,0.000041731633,0.00018694827,0.0000049915084,0.00005278459,0.000007147911,0.000015743564,0.000007929992,0.9900235,0.000060632272,0.0019119282,0.007656115],"study_design_scores_gemma":[0.00042616748,0.00027245222,0.00048637026,0.0000024427216,0.00002471606,0.000029669105,0.000009984963,0.00002536332,0.79022926,0.00017608664,0.20801444,0.00030302437],"about_ca_topic_score_codex":0.000025547559,"about_ca_topic_score_gemma":0.00028997965,"teacher_disagreement_score":0.20610252,"about_ca_system_score_codex":0.000007903315,"about_ca_system_score_gemma":0.00011925266,"threshold_uncertainty_score":0.9999519},"labels":[],"label_agreement":null},{"id":"W2135106844","doi":"10.1016/j.jmb.2008.01.001","title":"Structural Insight on the Mechanism of Regulation of the MarR Family of Proteins: High-Resolution Crystal Structure of a Transcriptional Repressor from Methanobacterium thermoautotrophicum","year":2008,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; York University","funders":"National Center for Research Resources","keywords":"Operon; Repressor; Efflux; Biology; Biochemistry; DNA; Transcriptional regulation; Electrophoretic mobility shift assay; Protein family; Conformational change; Escherichia coli; Cell biology; Genetics; Chemistry; Gene; Transcription factor","score_opus":0.009990435648083936,"score_gpt":0.2061906364931976,"score_spread":0.19620020084511366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135106844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957115,0.00064894155,0.002427326,0.0003557221,0.00032012424,0.00025139804,0.0002697385,0.0000015361488,0.000013733572],"genre_scores_gemma":[0.9977008,0.00012601812,0.0019514402,0.000059092512,0.00010060042,0.0000019810013,0.0000408228,0.000013791644,0.0000054154634],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983663,0.00036104763,0.00072612,0.00019140982,0.00021689355,0.0001382596],"domain_scores_gemma":[0.99789584,0.000022069406,0.001241029,0.00043133463,0.00038445415,0.000025259149],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015750075,0.00016716159,0.00040107383,0.00008459264,0.000040105213,0.0000020855646,0.00044715192,0.0004470348,0.00002881789],"category_scores_gemma":[0.00010956236,0.00009554066,0.0002791906,0.00012525372,0.00046700824,0.0000043754326,0.000098228295,0.0002008599,5.1443386e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006769924,0.000046221587,0.0001178821,0.00001635176,0.0002395237,0.0000011534592,0.000062499275,0.00016418882,0.9936512,0.004861784,0.000007045093,0.00015516157],"study_design_scores_gemma":[0.0006568273,0.001239573,0.037389133,0.000040625295,0.00006231256,0.000043018907,0.000019304323,0.000031610063,0.9537634,0.0065739895,0.00009727692,0.000082893326],"about_ca_topic_score_codex":0.00006728448,"about_ca_topic_score_gemma":0.000007778353,"teacher_disagreement_score":0.03988776,"about_ca_system_score_codex":0.000011437983,"about_ca_system_score_gemma":0.00012959288,"threshold_uncertainty_score":0.3896035},"labels":[],"label_agreement":null},{"id":"W2135335378","doi":"10.1128/jb.00149-11","title":"An Antirepressor, SrpR, Is Involved in Transcriptional Regulation of the SrpABC Solvent Tolerance Efflux Pump of Pseudomonas putida S12","year":2011,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Efflux; Pseudomonas putida; Operon; Biology; Repressor; Pseudomonadales; Bacteria; Pseudomonadaceae; Function (biology); Biochemistry; Microbiology; Biophysics; Pseudomonas aeruginosa; Genetics; Cell biology; Gene; Gene expression; Escherichia coli","score_opus":0.017351573985019974,"score_gpt":0.2332395694600576,"score_spread":0.21588799547503765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135335378","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998599,0.00028144475,0.00022693086,0.00020442347,0.00049363746,0.00011285821,0.000024352335,0.0000017241197,0.00005566231],"genre_scores_gemma":[0.99826485,0.00028682902,0.001164307,0.000107306245,0.00013298923,0.0000022559827,0.000011550527,0.000011385564,0.000018520042],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99863726,0.00015778869,0.0007307144,0.00019123995,0.00010745974,0.00017554645],"domain_scores_gemma":[0.9987314,0.000008723164,0.0006593943,0.0003528718,0.00020436183,0.00004324687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031860304,0.00013494052,0.0003543437,0.00009590897,0.000023796636,0.000003930997,0.0004251091,0.0003723831,0.000072878094],"category_scores_gemma":[0.00003189609,0.000100109435,0.00018192854,0.00010485207,0.00027808596,0.000010379105,0.00006353653,0.00016877434,4.799374e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047073295,0.00020961839,0.038059708,0.000020357946,0.000051506464,0.0000011598123,0.000181463,0.00002829591,0.96011186,0.00016756066,0.000027702254,0.0006700516],"study_design_scores_gemma":[0.0005582661,0.00071110035,0.3966443,0.000029483272,0.000016540098,0.00003669777,0.000025236945,0.000029152772,0.60088724,0.00036680597,0.0006309416,0.00006423373],"about_ca_topic_score_codex":0.0000398693,"about_ca_topic_score_gemma":0.000052280942,"teacher_disagreement_score":0.3592246,"about_ca_system_score_codex":0.000012321315,"about_ca_system_score_gemma":0.00010772546,"threshold_uncertainty_score":0.40823442},"labels":[],"label_agreement":null},{"id":"W2135949348","doi":"10.1128/jb.00832-09","title":"A Novel Insertion Sequence Derepresses Efflux Pump Expression and Preadapts <i>Pseudomonas putida</i> S12 for Extreme Solvent Stress","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Efflux; Pseudomonas putida; Biology; Repressor; Solvent; Insertion sequence; Sequence (biology); Genetics; Cell biology; Gene; Biochemistry; Gene expression; Transposable element; Mutant","score_opus":0.027080137733590946,"score_gpt":0.25958492012733386,"score_spread":0.23250478239374292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135949348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98984617,0.0006794848,0.007936681,0.00090758625,0.0003517167,0.00020592716,0.000043985747,0.000007752692,0.000020697338],"genre_scores_gemma":[0.9912422,0.00090747623,0.0069633313,0.00031118141,0.0004649358,0.00000781561,0.000045628847,0.000014751488,0.00004268935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988144,0.000053243693,0.0004750029,0.00029893455,0.00008058747,0.00027780843],"domain_scores_gemma":[0.9989873,0.000028018707,0.00043674174,0.00023580514,0.00020789987,0.000104224484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002120172,0.0001956172,0.00032430666,0.00008112121,0.00007508968,0.000032501815,0.00024334963,0.00042071912,0.000006441477],"category_scores_gemma":[0.00013747888,0.0001589803,0.00011444248,0.000044726465,0.00011982885,0.00001311634,0.00009637165,0.00014953112,4.998561e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005386613,0.00014194023,0.00066435884,0.000020766929,0.000038826656,0.000004126618,0.000022232425,0.000021061214,0.9934349,0.00004800316,0.00018795716,0.0048771827],"study_design_scores_gemma":[0.0012954338,0.002292196,0.013518414,0.000076378354,0.00003797078,0.00058910594,0.000025472307,0.000029774308,0.9702685,0.00034898307,0.011327631,0.00019013477],"about_ca_topic_score_codex":0.000004635242,"about_ca_topic_score_gemma":0.0000092403425,"teacher_disagreement_score":0.023166377,"about_ca_system_score_codex":0.000016013419,"about_ca_system_score_gemma":0.00008768152,"threshold_uncertainty_score":0.64830285},"labels":[],"label_agreement":null},{"id":"W2136195150","doi":"10.1186/gb-2003-4-3-r19","title":"The rhomboids: a nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers","year":2003,"lang":"en","type":"article","venue":"Genome biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":225,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Horizontal gene transfer; Rhomboid; Phylogenetic tree; Archaea; Most recent common ancestor; Genetics; Evolutionary biology; Genome; Three-domain system; Phylogenetics; Gene; Proteases","score_opus":0.008589841677527476,"score_gpt":0.20142928142099306,"score_spread":0.1928394397434656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136195150","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904793,0.0066311415,0.0010255829,0.00017160899,0.00037993156,0.0008337653,0.00031874323,0.000025787636,0.00013413094],"genre_scores_gemma":[0.9961959,0.002013904,0.00097455934,0.00014760639,0.000112070644,0.00012561133,0.00028467015,0.00003259219,0.00011304862],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982129,0.00016406429,0.0003732074,0.00055783155,0.000094413124,0.00059759506],"domain_scores_gemma":[0.99907756,0.000021762555,0.00014027266,0.00054760615,0.00010636512,0.00010645614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027808748,0.00028875342,0.0003226031,0.000044661625,0.0001614366,0.000024184506,0.00044447096,0.0004999266,0.000011205909],"category_scores_gemma":[0.00008852527,0.00021142494,0.00013940637,0.00014104767,0.0005437165,0.0000032085973,0.00010282769,0.00015551577,0.0000058759224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025527802,0.00011338583,0.0006352221,0.000016472066,0.00010534456,0.0000021592818,0.00002808829,0.0000052633964,0.9939136,0.00011828353,0.00014491692,0.004661984],"study_design_scores_gemma":[0.00089854514,0.0024868248,0.001741247,0.0000034378797,0.000020895703,0.000028201908,0.00010604387,0.000006161619,0.83791834,0.000072310446,0.15646413,0.00025384375],"about_ca_topic_score_codex":0.00008134683,"about_ca_topic_score_gemma":0.00008589243,"teacher_disagreement_score":0.15631922,"about_ca_system_score_codex":0.000024656374,"about_ca_system_score_gemma":0.0001506484,"threshold_uncertainty_score":0.86216587},"labels":[],"label_agreement":null},{"id":"W2136242626","doi":"10.1093/jac/dkr519","title":"Growth phase-dependent expression of RND efflux pump- and outer membrane porin-encoding genes in Acinetobacter baumannii ATCC 19606","year":2011,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Tech University","funders":"","keywords":"Porin; Acinetobacter baumannii; Efflux; Biology; Gene; Bacterial outer membrane; Microbiology; Cell biology; Genetics; Bacteria; Pseudomonas aeruginosa; Escherichia coli","score_opus":0.013391183686696223,"score_gpt":0.2376446734765666,"score_spread":0.22425348978987036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136242626","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99880356,0.00028668655,0.00022694527,0.0001943654,0.00027255423,0.000110745736,0.000011484099,0.0000036847032,0.00008998306],"genre_scores_gemma":[0.9939092,0.003671114,0.0018093638,0.0002383176,0.0002734346,7.934829e-7,0.0000066875314,0.000027532675,0.00006355177],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887305,0.000043271924,0.00053953833,0.00022436993,0.00009975354,0.0002200002],"domain_scores_gemma":[0.99922323,0.000006110077,0.00039531256,0.00018196172,0.0001288755,0.00006448196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000233769,0.00019405287,0.00036011715,0.00015049941,0.000027952143,0.000017002616,0.00024617556,0.00029954023,0.000051877978],"category_scores_gemma":[0.000012813134,0.00015751664,0.000114496244,0.00007178117,0.000106445594,0.0000130778335,0.000086124535,0.00016247739,7.257789e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008345202,0.0002674926,0.0035356155,0.00003715386,0.000053468313,0.0000138896585,0.00017716135,0.0000012180299,0.99363756,0.0000039008855,0.00020169957,0.0012363398],"study_design_scores_gemma":[0.0034682646,0.0007293199,0.0017549279,0.00007965362,0.00001733807,0.00018024682,0.000029768351,0.000002024204,0.9915887,0.00001753031,0.001964079,0.00016811492],"about_ca_topic_score_codex":0.00001996758,"about_ca_topic_score_gemma":0.000014328444,"teacher_disagreement_score":0.0048943465,"about_ca_system_score_codex":0.000011271605,"about_ca_system_score_gemma":0.000043905922,"threshold_uncertainty_score":0.6423342},"labels":[],"label_agreement":null},{"id":"W2136304640","doi":"10.1128/jb.185.17.5117-5124.2003","title":"ClpE from <i>Lactococcus lactis</i> Promotes Repression of CtsR-Dependent Gene Expression","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ottawa Mental Health Centre","funders":"Academy of Finland","keywords":"Biology; Lactococcus lactis; Heat shock protein; Gene expression; Molecular biology; Bacillus subtilis; Heat shock; Northern blot; Cell biology; Gene; Biochemistry; Genetics; Bacteria; Lactic acid","score_opus":0.009804355891212443,"score_gpt":0.2364576050332726,"score_spread":0.22665324914206014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136304640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99690366,0.0010447189,0.0007372134,0.000121000936,0.0008320422,0.0001390617,0.000035163845,0.0000051146935,0.00018205024],"genre_scores_gemma":[0.99302495,0.0007800479,0.0056585106,0.00008625185,0.00032733197,0.000003979936,0.00003148867,0.000022620803,0.00006481085],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99832815,0.0002644563,0.00072999246,0.0003004201,0.00012992772,0.00024704007],"domain_scores_gemma":[0.998349,0.000032287273,0.0008600143,0.00043864604,0.00021761449,0.000102441634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035623292,0.00019578953,0.00044956745,0.000092942944,0.000042596348,0.000013053088,0.00032182754,0.0005766532,0.000116544295],"category_scores_gemma":[0.00027567925,0.00015070829,0.0001660081,0.00006367478,0.00013327353,0.000007811901,0.0001424812,0.00024604285,0.000003493123],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042443923,0.0001323146,0.0035637035,0.000009186712,0.000075954325,0.000016002119,0.000025799574,0.000009224922,0.9937922,0.00001556566,0.00028052172,0.0016551255],"study_design_scores_gemma":[0.000958678,0.0012422453,0.00536856,0.000040271156,0.00003282644,0.0002116085,0.00003187084,0.0000011793188,0.9704627,0.00032341082,0.021175394,0.00015127823],"about_ca_topic_score_codex":0.000013870726,"about_ca_topic_score_gemma":0.000006509907,"teacher_disagreement_score":0.023329483,"about_ca_system_score_codex":0.0000149512425,"about_ca_system_score_gemma":0.00013598958,"threshold_uncertainty_score":0.61457056},"labels":[],"label_agreement":null},{"id":"W2136512078","doi":"10.1110/ps.036244.108","title":"TonB induces conformational changes in surface‐exposed loops of FhuA, outer membrane receptor of <i>Escherichia coli</i>","year":2008,"lang":"en","type":"article","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Bacterial outer membrane; Escherichia coli; Biophysics; Conformational change; Chemistry; Membrane protein; Membrane; Crystallography; Microbiology; Biochemistry; Biology; Gene","score_opus":0.017577831335218324,"score_gpt":0.23215067664031888,"score_spread":0.21457284530510057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136512078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987514,0.00010002164,0.000029039204,0.00040876653,0.00009155535,0.00028154446,0.000029179231,0.000004558216,0.00030395805],"genre_scores_gemma":[0.9954635,0.00010424502,0.0041547758,0.0000691121,0.000028323519,0.00001271764,0.000015282405,0.0000048997026,0.00014712823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905366,0.000023384395,0.0002452331,0.00022335211,0.00025369378,0.00020067158],"domain_scores_gemma":[0.9993432,0.000004460325,0.00015955484,0.00021983968,0.00023219104,0.000040728533],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003945276,0.00009388549,0.00015493046,0.00006923712,0.000046681424,0.000007146254,0.00037824325,0.00014734287,0.000026967142],"category_scores_gemma":[0.00009742139,0.00008339058,0.00002549701,0.0003492367,0.0007565036,0.000008649218,0.00014729686,0.00006893092,0.0000027050648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056797075,0.00004596669,0.00042829657,0.00001884484,0.0000037152938,3.9603344e-7,0.00012195555,0.000009982745,0.99875534,0.0000902694,0.000019732828,0.0004487174],"study_design_scores_gemma":[0.00030901638,0.0003561696,0.0017568104,0.00001633692,0.0000012213178,0.0000031821744,0.00004596774,0.00002259538,0.9948392,0.000015999298,0.0025357509,0.00009774222],"about_ca_topic_score_codex":0.000034697852,"about_ca_topic_score_gemma":0.00003415591,"teacher_disagreement_score":0.0041257367,"about_ca_system_score_codex":0.000008414583,"about_ca_system_score_gemma":0.00021887124,"threshold_uncertainty_score":0.34005693},"labels":[],"label_agreement":null},{"id":"W2136622057","doi":"10.1139/o11-028","title":"A PAS domain within F plasmid TraJ is critical for its function as a transcriptional activator","year":2011,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Operon; Plasmid; Biology; Escherichia coli; Serine; PAS domain; Cysteine; Molecular biology; Mutant; Biochemistry; Gene; Transcription factor; Phosphorylation; Enzyme","score_opus":0.017085968255822283,"score_gpt":0.22852798748272554,"score_spread":0.21144201922690326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136622057","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945526,0.0011236395,0.0009021317,0.00044111558,0.00031642194,0.00019418239,0.0002327601,0.000022490807,0.0022146497],"genre_scores_gemma":[0.99585736,0.00015025909,0.001778356,0.00097616715,0.0003618767,0.00008170175,0.0002393734,0.000019994008,0.0005349033],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99873513,0.000030362447,0.0002417547,0.0005938407,0.000045443416,0.0003534918],"domain_scores_gemma":[0.9994747,0.000015973977,0.00007058519,0.00021750476,0.00008298292,0.00013826023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012863369,0.0002301866,0.00018576511,0.000027597558,0.00011918369,0.000014842876,0.0001603201,0.0008669877,0.00015765958],"category_scores_gemma":[0.000055774268,0.00021277828,0.0001072033,0.000048523925,0.00028970174,0.000003701348,0.000059507645,0.00012564528,0.000007394132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000957603,0.00013060294,0.00010181967,0.000068219924,0.00004888158,0.0000010969167,0.00005515772,4.0580534e-8,0.99439234,0.0032913077,0.0004020094,0.0005509379],"study_design_scores_gemma":[0.00076556654,0.001156253,0.00010180668,0.0000063205293,0.00003552391,0.00003329847,0.00013727095,0.000005810338,0.9131576,0.0018270592,0.08251735,0.0002561877],"about_ca_topic_score_codex":0.0000042349757,"about_ca_topic_score_gemma":0.0000026025898,"teacher_disagreement_score":0.08211534,"about_ca_system_score_codex":0.000008332473,"about_ca_system_score_gemma":0.00009682832,"threshold_uncertainty_score":0.8676846},"labels":[],"label_agreement":null},{"id":"W2136670217","doi":"10.1073/pnas.100127597","title":"An efficient recombination system for chromosome engineering in <i>Escherichia coli</i>","year":2000,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1740,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"McGill University","keywords":"Prophage; Plasmid; Escherichia coli; Biology; Recombineering; In vitro recombination; Genetics; DNA; Circular bacterial chromosome; Chromosome; Recombination; Molecular biology; Gene; Bacteriophage; Molecular cloning; Gene expression","score_opus":0.011940729057111592,"score_gpt":0.24764600910341858,"score_spread":0.23570528004630698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136670217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991822,0.000041499643,0.0000018540416,0.00028518424,0.00001808527,0.0001695681,0.000009299885,0.0000047364088,0.00028753246],"genre_scores_gemma":[0.99867934,0.000020638587,0.0011667814,0.00003924503,0.000052045365,0.000016159423,6.4308426e-7,0.00000326519,0.000021907716],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938405,0.0000026405066,0.00017688841,0.0001684317,0.00016942224,0.00009856009],"domain_scores_gemma":[0.9997912,0.000006780965,0.000099253404,0.000007684437,0.00008079122,0.000014274173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047227612,0.000055139455,0.00007736368,0.000053616368,0.000043997323,0.000009291365,0.00034858545,0.000118577525,0.0000020431974],"category_scores_gemma":[0.000040920142,0.000042160802,0.000031793916,0.0002425377,0.00011783553,0.000006379486,0.000021388161,0.00004470992,1.7958752e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016922368,0.000031892145,0.00016047058,0.000035027664,0.0000029745468,7.064503e-10,0.000013649741,0.00162758,0.99511915,0.002691054,0.000019526791,0.000281759],"study_design_scores_gemma":[0.00022857802,0.00016092022,0.0072750063,0.0000323922,0.0000027464118,0.0000018227379,0.000021040625,0.0071414774,0.9843379,0.00025497648,0.0004887915,0.000054344764],"about_ca_topic_score_codex":0.0000016098275,"about_ca_topic_score_gemma":6.0822394e-8,"teacher_disagreement_score":0.010781239,"about_ca_system_score_codex":0.000014191831,"about_ca_system_score_gemma":0.00001380138,"threshold_uncertainty_score":0.17192675},"labels":[],"label_agreement":null},{"id":"W2137434580","doi":"10.1128/jb.188.1.45-54.2006","title":"Role of the Novel OprD Family of Porins in Nutrient Uptake in <i>Pseudomonas aeruginosa</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":151,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Porin; Biology; Biochemistry; Subfamily; Genetics; Bacterial outer membrane; Amino acid; Operon; Pseudomonas aeruginosa; Mutant; Bacteria; Gene; Escherichia coli","score_opus":0.007451400248440655,"score_gpt":0.21586974239221957,"score_spread":0.2084183421437789,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137434580","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99791425,0.0010210515,0.000030270285,0.0004919496,0.00026891692,0.00010294254,0.000020032256,9.662319e-7,0.00014959613],"genre_scores_gemma":[0.99776363,0.00077281805,0.0011101,0.00014387273,0.00017574159,0.0000021209235,0.0000041215535,0.000010168539,0.00001739638],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99864376,0.00006712517,0.00083184155,0.00015422242,0.00008934046,0.00021369614],"domain_scores_gemma":[0.9989875,0.000013270152,0.00058010774,0.00026995578,0.000112827256,0.000036315956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003188652,0.00012921305,0.00038730947,0.00014075839,0.000011163991,0.0000031536806,0.0004300768,0.00034585525,0.000007838108],"category_scores_gemma":[0.0000680328,0.00009413668,0.00014613324,0.00016275686,0.00017589584,0.0000044332955,0.00017727645,0.00023505771,5.520342e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024940315,0.00025418442,0.010950932,0.000007948567,0.000026638305,0.0000016845431,0.00005669275,0.000088345754,0.98463243,0.00019461631,0.000027739827,0.003509375],"study_design_scores_gemma":[0.0012662476,0.00056674343,0.26785433,0.000037001708,0.000010540551,0.00010038484,0.00010531994,0.00001060959,0.70227367,0.000116979216,0.02757024,0.00008794711],"about_ca_topic_score_codex":0.000034338103,"about_ca_topic_score_gemma":0.00015200632,"teacher_disagreement_score":0.2823588,"about_ca_system_score_codex":0.000024045212,"about_ca_system_score_gemma":0.00015403246,"threshold_uncertainty_score":0.38387826},"labels":[],"label_agreement":null},{"id":"W2137608880","doi":"10.1128/jb.182.16.4394-4400.2000","title":"Identification and Characterization of a Membrane Permease Involved in Iron-Hydroxamate Transport in <i>Staphylococcus aureus</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Medical Research Council","keywords":"Ferrichrome; Biology; Aerobactin; Permease; Escherichia coli; Siderophore; Transposable element; Mutant; Biochemistry; Operon; Bacillus subtilis; DNA; Gene; Staphylococcus aureus; Molecular biology; Bacterial outer membrane; Enterobacteriaceae; Genetics; Bacteria","score_opus":0.005297288635720392,"score_gpt":0.20814726630539881,"score_spread":0.2028499776696784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137608880","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992546,0.00016451364,0.000019671495,0.00028746104,0.0001108348,0.00012050413,0.000023756353,0.0000019352372,0.00001675689],"genre_scores_gemma":[0.997281,0.002373242,0.000066017274,0.00007907233,0.000081483966,0.0000040346677,0.00006992865,0.000011054117,0.000034129163],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988083,0.00009053923,0.0007010887,0.00018239136,0.000056833982,0.00016083047],"domain_scores_gemma":[0.99942166,0.0000058728256,0.00031205386,0.0001564491,0.0000592806,0.000044708555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030774172,0.0001197536,0.0003118529,0.00017640149,0.00001264138,0.000006019528,0.0001481865,0.00030033384,0.00004351263],"category_scores_gemma":[0.000017110528,0.00011124952,0.000055120025,0.000117713986,0.0001227607,0.000010629046,0.00001909673,0.00013697628,8.6710355e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045646238,0.00009811678,0.02051469,0.00003257796,0.000013187294,0.0000114124305,0.0000778572,0.000020870133,0.97598195,0.0000067188435,0.0000021651929,0.0027839846],"study_design_scores_gemma":[0.0011039758,0.00042569422,0.40966994,0.000034569504,0.000013376367,0.000035271954,0.000022033539,0.000031723055,0.58675855,0.000032454343,0.0017621699,0.00011023009],"about_ca_topic_score_codex":0.000017247638,"about_ca_topic_score_gemma":0.000098507684,"teacher_disagreement_score":0.3892234,"about_ca_system_score_codex":0.000011878229,"about_ca_system_score_gemma":0.000058127745,"threshold_uncertainty_score":0.4536624},"labels":[],"label_agreement":null},{"id":"W2137745169","doi":"10.1261/rna.1314409","title":"Molecular basis of TRAP–5′SL RNA interaction in the <i>Bacillus subtilis trp</i> operon transcription attenuation mechanism","year":2008,"lang":"en","type":"article","venue":"RNA","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Bacillus subtilis; Operon; trp operon; Transcription (linguistics); RNA; Mechanism (biology); Genetics; Computational biology; Cell biology; Gene; Bacteria; Physics; Escherichia coli","score_opus":0.015543911249647335,"score_gpt":0.22747889418116152,"score_spread":0.2119349829315142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137745169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99657893,0.00030877517,0.0015673275,0.000652008,0.00019780127,0.00021679729,0.000016689604,0.000008133771,0.00045351652],"genre_scores_gemma":[0.9984715,0.00083564676,0.00020741083,0.00025200204,0.00007217256,0.000021029697,0.000090377995,0.000013571976,0.000036301437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999108,0.00009779681,0.00026058816,0.00024295914,0.00012811073,0.0001625061],"domain_scores_gemma":[0.9995447,0.0000056543254,0.00009222137,0.00028184286,0.00005330238,0.000022304926],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018361676,0.00012696524,0.00013610037,0.00006765267,0.000047209644,0.00000892195,0.00020430108,0.00024823388,0.000014774813],"category_scores_gemma":[0.000022004462,0.000103522754,0.0000988153,0.00014427393,0.0000681046,0.000005979036,0.000023786979,0.00011821567,0.0000036201736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000088775116,0.00007665654,0.000036429843,0.000009381627,0.000016152795,0.00000477052,0.0001686028,0.000026751788,0.9913429,0.0002661897,0.00011766303,0.007845719],"study_design_scores_gemma":[0.0004130119,0.00036967624,0.0012974767,0.0000112215275,0.000017497234,0.00003583865,0.00014934452,0.00010209704,0.9937941,0.00010922865,0.0035859807,0.00011454589],"about_ca_topic_score_codex":0.000092526374,"about_ca_topic_score_gemma":0.00008365405,"teacher_disagreement_score":0.007731173,"about_ca_system_score_codex":0.000016420456,"about_ca_system_score_gemma":0.000029348086,"threshold_uncertainty_score":0.42215353},"labels":[],"label_agreement":null},{"id":"W2137767952","doi":"10.1074/jbc.m311190200","title":"The Bacillus subtilis Response Regulator Spo0A Stimulates σA-Dependent Transcription Prior to the Major Energetic Barrier","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Bacillus subtilis; Regulator; Master regulator; Transcription (linguistics); Response regulator; Transcription factor; Chemistry; Cell biology; Biology; Genetics; Bacterial protein; Biochemistry; Bacteria; Gene","score_opus":0.009719250472253289,"score_gpt":0.22573142033192273,"score_spread":0.21601216985966945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137767952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99136657,0.0020230426,0.00021810795,0.005874152,0.00030536926,0.00014024162,0.000028523647,0.000009158803,0.00003482756],"genre_scores_gemma":[0.9976461,0.00052346115,0.00036602988,0.00033321144,0.0005910936,0.000008235079,0.0000090556705,0.00001444215,0.0005083741],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99856687,0.00010953075,0.00050472165,0.00027914104,0.00019984833,0.0003399204],"domain_scores_gemma":[0.99895144,0.00005122153,0.0002254304,0.0004138258,0.00018707335,0.00017101587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008811074,0.0002139183,0.0002229392,0.000019837855,0.00022746407,0.00006214224,0.0006656601,0.00048201263,0.000052441326],"category_scores_gemma":[0.00057147397,0.000106316336,0.00023662012,0.00010905462,0.00024563159,0.0000033746376,0.00013700583,0.00029540205,0.0000078210805],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023959575,0.000050258826,0.000055650544,0.0000047891467,0.000064321546,0.000013610189,0.000023011953,0.00017930202,0.99504197,0.000009733077,0.00024742683,0.0019139798],"study_design_scores_gemma":[0.00072906393,0.0007422522,0.0022100057,0.000015031503,0.000028540902,0.00022567109,0.000099899735,0.0000026549978,0.91621506,0.000186539,0.079390444,0.00015483],"about_ca_topic_score_codex":0.0000032412377,"about_ca_topic_score_gemma":0.0000067077035,"teacher_disagreement_score":0.07914302,"about_ca_system_score_codex":0.000053441014,"about_ca_system_score_gemma":0.00014152846,"threshold_uncertainty_score":0.43354544},"labels":[],"label_agreement":null},{"id":"W2137799017","doi":"10.1371/journal.pbio.1001493","title":"Mechanistic Insights Revealed by the Crystal Structure of a Histidine Kinase with Signal Transducer and Sensor Domains","year":2013,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":173,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Salt Science Research Foundation; National Institute of General Medical Sciences; National Institute of Dental and Craniofacial Research; National Natural Science Foundation of China; National Institutes of Health; National Science Foundation","keywords":"Histidine kinase; Response regulator; Biology; Biophysics; Phosphatase; HAMP domain; Phosphorylation; Histidine; Dimer; Kinase; Biochemistry; Crystallography; Cell biology; Binding site; Nuclear magnetic resonance; Chemistry; Physics; Amino acid; Binding domain","score_opus":0.0046610386568736945,"score_gpt":0.18304188911091684,"score_spread":0.17838085045404314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137799017","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772483,0.0006910749,0.0005163023,0.00047562175,0.00004108232,0.00033533774,0.00015933308,0.00000957121,0.000046857156],"genre_scores_gemma":[0.9983874,0.00013539287,0.00093890936,0.00018494562,0.0000900997,0.000017736947,0.00014775335,0.000016930551,0.000080860395],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991337,0.000083295585,0.00018535256,0.00033096675,0.000049863174,0.00021680244],"domain_scores_gemma":[0.9994821,0.000019160238,0.0000961931,0.00026352552,0.00008341297,0.00005559642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000029113082,0.00017785803,0.00021901319,0.000030538686,0.00006535434,0.000009959537,0.00016811781,0.00033389562,0.00009627107],"category_scores_gemma":[0.000019684496,0.00010180146,0.000032049018,0.00006503163,0.00038909842,0.0000017424816,0.000070692804,0.00011474593,0.0000014754064],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000104354025,0.00004320725,0.00027432016,0.000018864925,0.00009082417,0.0000010665094,0.000029037237,4.9780095e-7,0.99838245,0.00034915577,0.00020396763,0.00050223497],"study_design_scores_gemma":[0.00067023997,0.0014731307,0.00054968806,0.000008513379,0.00005558613,0.000050737533,0.00004558784,0.000029604436,0.9901553,0.0009775691,0.0058048023,0.00017925462],"about_ca_topic_score_codex":0.000051503386,"about_ca_topic_score_gemma":0.00006796015,"teacher_disagreement_score":0.0082271835,"about_ca_system_score_codex":0.000005276005,"about_ca_system_score_gemma":0.000029991174,"threshold_uncertainty_score":0.4151343},"labels":[],"label_agreement":null},{"id":"W2138142090","doi":"10.1128/jb.188.1.124-131.2006","title":"Hfq Is a Regulator of F-Plasmid TraJ and TraM Synthesis in<i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Biology; Operon; Plasmid; Escherichia coli; Molecular biology; Bacterial conjugation; RNA; Mutant; Repressor; DNA; Gene; Gene expression; Genetics","score_opus":0.00644462129838838,"score_gpt":0.21617749871128725,"score_spread":0.20973287741289887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138142090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99731755,0.00076584844,0.000032237233,0.0015417801,0.00015906396,0.000069929905,0.000019073821,0.0000022011193,0.000092284405],"genre_scores_gemma":[0.9948288,0.0013264472,0.0031398514,0.00039859203,0.0002510711,0.0000029576106,0.0000025179586,0.000014435287,0.000035294794],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889594,0.00008018203,0.0005703128,0.00018475328,0.000062017585,0.00020677167],"domain_scores_gemma":[0.99926114,0.000025473428,0.00037066857,0.00018328734,0.00008691885,0.000072520255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025782257,0.00014463624,0.0004172454,0.000115444636,0.000018222547,0.000008138707,0.00020004265,0.00042568866,0.00004830997],"category_scores_gemma":[0.000082900566,0.00012381114,0.000103182705,0.00008019972,0.00020042389,0.0000055458077,0.000067482615,0.00016265314,0.0000013266211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003478082,0.00008786295,0.0020704358,0.00001622777,0.00006520434,0.00000418276,0.000052448177,0.0000052771215,0.98797137,0.000031413674,0.00030581097,0.009041965],"study_design_scores_gemma":[0.00076491886,0.0009789031,0.039180677,0.000029913552,0.000034176963,0.00021144074,0.000044300545,0.000017949154,0.89643276,0.00005967702,0.062101934,0.00014332251],"about_ca_topic_score_codex":0.0000061110836,"about_ca_topic_score_gemma":0.000029362602,"teacher_disagreement_score":0.09153858,"about_ca_system_score_codex":0.000012570386,"about_ca_system_score_gemma":0.00008765438,"threshold_uncertainty_score":0.5048872},"labels":[],"label_agreement":null},{"id":"W2138363765","doi":"10.1128/jb.182.5.1226-1231.2000","title":"Expression of a New Operon from <i>Bacillus subtilis</i> , <i>ykzB-ykoL</i> , under the Control of the TnrA and PhoP-PhoR Global Regulators","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; European Commission; Institut national de la recherche scientifique","keywords":"Operon; Biology; Transcription (linguistics); Gene; Bacillus subtilis; Primer extension; Promoter; Genetics; Response regulator; Binding site; Repressor; Regulation of gene expression; Transcription factor; Gene expression; Messenger RNA; Bacteria; Escherichia coli","score_opus":0.0057224576035948835,"score_gpt":0.20918734623582225,"score_spread":0.20346488863222736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138363765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953223,0.0024241114,0.00013465046,0.0014568816,0.00037726096,0.0001272427,0.000089325826,0.000002027768,0.000066224464],"genre_scores_gemma":[0.99790686,0.00097543973,0.00023105039,0.00049303996,0.00029027063,0.0000011180088,0.0000066359853,0.000010651288,0.00008494062],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99875164,0.000188578,0.0005612288,0.0001937317,0.000112743495,0.00019204893],"domain_scores_gemma":[0.99889,0.000029180184,0.0005054315,0.0004015262,0.000101529,0.0000723246],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020917488,0.00016724713,0.00039688265,0.000019817579,0.00005282053,0.000011864185,0.00046992418,0.00039239385,0.00009756008],"category_scores_gemma":[0.00003929862,0.00009094067,0.00017489218,0.00008251484,0.00043304867,0.0000057340308,0.0001416609,0.00016967783,7.8074675e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008067404,0.00004081614,0.0025748846,0.000004722556,0.000089052366,0.0000011151236,0.000035751385,0.00003673295,0.9882662,0.000027988652,0.0006917724,0.007424211],"study_design_scores_gemma":[0.002471541,0.0011201336,0.08107189,0.000058285375,0.00011937765,0.00022073288,0.00012417368,0.000010078073,0.8647671,0.00065032346,0.049229022,0.00015736517],"about_ca_topic_score_codex":0.00009656221,"about_ca_topic_score_gemma":0.000045368855,"teacher_disagreement_score":0.12349914,"about_ca_system_score_codex":0.0000140451475,"about_ca_system_score_gemma":0.00016524139,"threshold_uncertainty_score":0.3708453},"labels":[],"label_agreement":null},{"id":"W2138702902","doi":"10.1128/jb.185.4.1261-1265.2003","title":"Pyoverdine-Mediated Regulation of FpvA Synthesis in <i>Pseudomonas aeruginosa</i> : Involvement of a Probable Extracytoplasmic-Function Sigma Factor, FpvI","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Medical Research Council; Canadian Institutes of Health Research; Cystic Fibrosis Foundation","keywords":"Pyoverdine; Biology; Sigma factor; Pseudomonas putida; Pseudomonas aeruginosa; Escherichia coli; Gene product; Siderophore; Open reading frame; Gene; Pseudomonas; Biochemistry; Microbiology; Genetics; Gene expression; Peptide sequence; Bacteria; RNA polymerase","score_opus":0.009973647293218835,"score_gpt":0.2106395813102149,"score_spread":0.20066593401699606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138702902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99827456,0.00038018773,0.0005374825,0.000109449495,0.00040392697,0.00016089258,0.000019496685,0.0000029679213,0.00011105484],"genre_scores_gemma":[0.99807066,0.00053054135,0.0012060765,0.00004531043,0.0000768294,0.000006070928,0.000020773214,0.000015439407,0.000028330833],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983395,0.00019973319,0.0009045863,0.00021034184,0.0001190338,0.00022684991],"domain_scores_gemma":[0.99848884,0.000055510704,0.0009151639,0.00024444683,0.00024156223,0.000054470238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041137164,0.00017266911,0.0004856859,0.00021591039,0.000019081592,0.00000575535,0.00018163976,0.00045046245,0.000064349944],"category_scores_gemma":[0.00034302883,0.00015067027,0.0001433328,0.00017259478,0.00013387889,0.000010865873,0.00005355241,0.00015896095,0.0000010213702],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005655298,0.00018965575,0.02134967,0.000043857017,0.00009460958,0.0000028060576,0.000026669797,0.00009518476,0.9761773,0.00012640146,0.000085409105,0.0012429255],"study_design_scores_gemma":[0.0010203929,0.0014967388,0.055584528,0.000055454195,0.000038414888,0.000068462934,0.000050828774,0.000009664459,0.93265146,0.00025481812,0.008630545,0.00013870277],"about_ca_topic_score_codex":0.000012574717,"about_ca_topic_score_gemma":0.000064759435,"teacher_disagreement_score":0.04352583,"about_ca_system_score_codex":0.000033933127,"about_ca_system_score_gemma":0.00017860773,"threshold_uncertainty_score":0.6144155},"labels":[],"label_agreement":null},{"id":"W2138921927","doi":"10.1128/jb.00526-08","title":"Duplication of Teichoic Acid Biosynthetic Genes in <i>Staphylococcus aureus</i> Leads to Functionally Redundant Poly(Ribitol Phosphate) Polymerases","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Teichoic acid; Biology; Biochemistry; Ribitol; Peptidoglycan; Gene; Cell wall; Bacillus subtilis; Mutant; Operon; Microbiology; Genetics; Enzyme; Bacteria","score_opus":0.009150981640462238,"score_gpt":0.2269416668828223,"score_spread":0.21779068524236006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138921927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99352777,0.00431349,0.0003387651,0.0010619705,0.0005388342,0.00014904139,0.000029639483,0.0000054110246,0.000035108053],"genre_scores_gemma":[0.996411,0.0015411393,0.0011980792,0.00034760125,0.0003864961,0.000008547695,0.000023707751,0.000021689573,0.00006171386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840647,0.00009638299,0.00079639425,0.0002881435,0.00011927381,0.00029336454],"domain_scores_gemma":[0.998813,0.000019621082,0.0005041358,0.00033091116,0.00022281594,0.000109569],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021437723,0.00020361863,0.00043692716,0.00027502206,0.00005145152,0.000005690736,0.00034994137,0.00037514782,0.0000410729],"category_scores_gemma":[0.00010982412,0.00017615827,0.00016372868,0.00021413383,0.00023078333,0.0000075108246,0.000121204335,0.0001703842,0.000006892249],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059503585,0.00015276602,0.013815321,0.000011142447,0.000051563624,0.000015226656,0.00003261514,0.000028172019,0.98151594,0.000024296622,0.00020929938,0.0035486096],"study_design_scores_gemma":[0.00060021254,0.0016317291,0.08077024,0.000026636239,0.000018543027,0.00034030317,0.000022737988,0.0000023546527,0.90369123,0.000023250028,0.012707184,0.00016560509],"about_ca_topic_score_codex":0.000027364165,"about_ca_topic_score_gemma":0.00004395254,"teacher_disagreement_score":0.07782475,"about_ca_system_score_codex":0.00002774576,"about_ca_system_score_gemma":0.00022706593,"threshold_uncertainty_score":0.7183526},"labels":[],"label_agreement":null},{"id":"W2139040250","doi":"10.1016/j.bbamem.2007.07.026","title":"Structural biology of bacterial iron uptake","year":2007,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":541,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Siderophore; Biology; Bacteria; Biochemistry; ATP-binding cassette transporter; Inner membrane; Transporter; Bacterial cell structure; Membrane protein; Cell biology; Membrane; Gene; Escherichia coli; Genetics","score_opus":0.03192172418768279,"score_gpt":0.31498854612226995,"score_spread":0.28306682193458715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139040250","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.42230442,0.5732533,0.0000042678766,0.00008271719,0.0017077983,0.00085053104,0.0015555829,0.00006871259,0.00017267409],"genre_scores_gemma":[0.043982208,0.9459147,0.00049599475,0.00006994718,0.0018165167,0.000045601024,0.007317547,0.00018684615,0.00017067083],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9955214,0.00028215148,0.0015257124,0.0014958554,0.00024325387,0.00093161693],"domain_scores_gemma":[0.99682915,0.000062302584,0.0012477007,0.0014916309,0.0001575468,0.00021169291],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00033058718,0.001235337,0.0023449585,0.0005442523,0.00012253455,0.00007480073,0.0014666175,0.002768848,0.00008905419],"category_scores_gemma":[0.000072149,0.0010024565,0.0011596531,0.00066373765,0.0009855966,0.000009277482,0.00079859165,0.00048725455,0.000035888654],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013708066,0.00010014547,1.1105923e-7,0.002526345,0.0003952047,0.0000030923618,0.00001672369,6.504703e-8,0.83645403,0.00011514594,0.000239423,0.16001265],"study_design_scores_gemma":[0.00041393016,0.0006798593,0.0000135435685,0.00045752886,0.00041267357,0.000051592313,0.000008062865,8.788277e-7,0.40151203,0.000030129957,0.5956008,0.0008189966],"about_ca_topic_score_codex":0.00003569786,"about_ca_topic_score_gemma":0.000017795946,"teacher_disagreement_score":0.59536135,"about_ca_system_score_codex":0.00003914046,"about_ca_system_score_gemma":0.00042978936,"threshold_uncertainty_score":0.9992426},"labels":[],"label_agreement":null},{"id":"W2139044751","doi":"10.1128/jb.183.16.4814-4822.2001","title":"Developmental Gene Expression in <i>Bacillus subtilis crsA47</i> Mutants Reveals Glucose-Activated Control of the Gene for the Minor Sigma Factor ς <sup>H</sup>","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Sigma factor; Bacillus subtilis; Gene; Gene expression; Mutant; Molecular biology; RNA polymerase; Mutation; Genetics; Promoter; Regulation of gene expression; RNA; Bacteria","score_opus":0.012554820512077963,"score_gpt":0.22598108544692286,"score_spread":0.2134262649348449,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139044751","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960013,0.0011122961,0.0013291884,0.0006026629,0.00036346348,0.00043252713,0.00014319454,0.0000034081036,0.0000119467995],"genre_scores_gemma":[0.99702835,0.001004838,0.0012461136,0.00029640354,0.00030542028,0.000017687575,0.00001527262,0.000024813398,0.00006112752],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998215,0.00020135877,0.0008191624,0.00026530522,0.00012529484,0.00037384854],"domain_scores_gemma":[0.99864334,0.000102570244,0.0006755058,0.00028882545,0.0002218136,0.00006792646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037041443,0.00023800146,0.00048373142,0.00008502587,0.00009635977,0.000015944832,0.00063450343,0.0004907429,0.000046057612],"category_scores_gemma":[0.00027476772,0.00013824525,0.00022716293,0.00014613921,0.00023097654,0.000008815971,0.0001430049,0.0002399024,8.641098e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014135913,0.00009387714,0.007402446,0.000009594415,0.00012611155,0.0000071563136,0.000075310505,0.00008933554,0.9867676,0.0000016062935,0.00010215377,0.003911226],"study_design_scores_gemma":[0.0022646661,0.00064960134,0.041511245,0.000029286697,0.00003299717,0.00044062684,0.00008554358,0.000032320855,0.93483156,0.000029852374,0.019938061,0.00015424167],"about_ca_topic_score_codex":0.000011565571,"about_ca_topic_score_gemma":0.000019624715,"teacher_disagreement_score":0.051936034,"about_ca_system_score_codex":0.00004704749,"about_ca_system_score_gemma":0.00018620778,"threshold_uncertainty_score":0.56374776},"labels":[],"label_agreement":null},{"id":"W2139076382","doi":"10.1099/mic.0.25948-0","title":"Prokaryotic motility structures","year":2003,"lang":"en","type":"review","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":216,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Flagellum; Motility; Biology; Pilus; Gliding motility; Cell biology; Secretion; Bacteria; Computational biology; Genetics; Gene; Biochemistry; Virulence","score_opus":0.019244480413408996,"score_gpt":0.27651120536754514,"score_spread":0.25726672495413616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139076382","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005080213,0.9971723,0.00003528602,0.0000127131925,0.0009981262,0.0006102728,0.0002826439,0.000026002162,0.00035465622],"genre_scores_gemma":[0.00008025852,0.9955433,0.0006104276,0.00012459396,0.00031655075,0.00004963512,0.002066456,0.00006721162,0.001141558],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977269,0.0003015332,0.0005249738,0.0009041398,0.000027261962,0.00051515625],"domain_scores_gemma":[0.9987422,0.000011125548,0.0002652089,0.0008590276,0.00005222384,0.00007020801],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00015264515,0.0005512624,0.0011602037,0.00010626169,0.00007126494,0.000021122638,0.0005695302,0.0021695956,0.00012307105],"category_scores_gemma":[0.000046904424,0.00043294515,0.00043538038,0.0001336366,0.0003053645,6.848541e-7,0.0003142555,0.00037172073,0.00009060677],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016419099,0.00009880988,0.000007377098,0.0035022318,0.0005227557,0.000012567478,0.000004286899,3.1559694e-7,0.10581372,0.00026967228,0.007865599,0.88188624],"study_design_scores_gemma":[0.00013406554,0.00022672155,0.000001835674,0.0001361891,0.00018486679,0.00051306206,0.0000016181142,3.319153e-8,0.0023640376,0.000067230016,0.99599147,0.00037885696],"about_ca_topic_score_codex":0.00000453333,"about_ca_topic_score_gemma":0.00001273622,"teacher_disagreement_score":0.98812586,"about_ca_system_score_codex":0.000028605871,"about_ca_system_score_gemma":0.00025541862,"threshold_uncertainty_score":0.99981225},"labels":[],"label_agreement":null},{"id":"W2139288315","doi":"10.1093/glycob/cwq104","title":"Functional analysis of the C-terminal domain of the WbaP protein that mediates initiation of O antigen synthesis in Salmonella enterica","year":2010,"lang":"en","type":"article","venue":"Glycobiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; National Institutes of Health; York University","keywords":"Salmonella enterica; Terminal (telecommunication); Salmonella; Chemistry; Antigen; Domain (mathematical analysis); Cell biology; Microbiology; Biology; Immunology; Computer science; Bacteria; Genetics; Mathematics; Computer network","score_opus":0.007787382177157113,"score_gpt":0.20866508619186389,"score_spread":0.20087770401470678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139288315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990205,0.000060866514,0.00003522797,0.00024381951,0.00028132944,0.00017676757,0.00009666898,0.0000018473374,0.00008297291],"genre_scores_gemma":[0.99962234,0.000040719315,0.0001889238,0.000024221188,0.000047446036,0.000019262145,0.000037120626,0.0000057371453,0.00001422876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913794,0.00014278769,0.00030908774,0.00019843796,0.00007390977,0.00013783734],"domain_scores_gemma":[0.9991448,0.000033206044,0.00033745883,0.00040484552,0.00006605404,0.000013627455],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002180253,0.000101200276,0.0002583052,0.00010308625,0.000025804517,0.0000019371412,0.00033847665,0.0003437762,0.000056784873],"category_scores_gemma":[0.00013530508,0.0000615228,0.00017566484,0.00031405402,0.0004585261,0.0000014396265,0.00020682326,0.00011600977,4.4292025e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009434187,0.000058861056,0.09712256,0.000009472612,0.00013623755,2.4078332e-7,0.000021171862,0.000008107146,0.90193754,0.00013993212,0.000013119358,0.00045840302],"study_design_scores_gemma":[0.0001219236,0.00006647306,0.31215933,0.000006352666,0.000054166543,0.0000043922914,0.000022758337,0.000008449465,0.6868746,0.000116574745,0.0005197529,0.000045166365],"about_ca_topic_score_codex":0.000057211888,"about_ca_topic_score_gemma":0.00044259013,"teacher_disagreement_score":0.2150629,"about_ca_system_score_codex":0.000004172355,"about_ca_system_score_gemma":0.000060609025,"threshold_uncertainty_score":0.26515168},"labels":[],"label_agreement":null},{"id":"W2140806604","doi":"10.1128/iai.68.4.2359-2362.2000","title":"In Vivo-Induced Genes in <i>Pseudomonas aeruginosa</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Université Laval","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; Harvard University; Medical Research Council Canada; Monash University; National Institutes of Health","keywords":"Biology; Pyoverdine; Pseudomonas aeruginosa; Virulence; In vivo; Open reading frame; Microbiology; Biogenesis; Gene; Peptide sequence; Bacteria; Genetics","score_opus":0.008282752767349215,"score_gpt":0.23416093973293117,"score_spread":0.22587818696558196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140806604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975943,0.0002228418,0.0000037406346,0.00015679593,0.00012668157,0.000089772315,0.0000029700036,0.000009062783,0.001793826],"genre_scores_gemma":[0.9966023,0.0028059836,0.00003166674,0.0002239812,0.000057740082,0.000010236228,0.000008605394,0.0000067088745,0.00025279622],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994653,0.000065517306,0.00013978293,0.00015787888,0.000028106146,0.00014342814],"domain_scores_gemma":[0.99976814,0.0000036062463,0.000020922085,0.000168804,0.000013379339,0.000025135378],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011582022,0.00009096494,0.000095578645,0.00006640875,0.000041387357,0.000014236898,0.0000552001,0.00022378386,0.000149813],"category_scores_gemma":[0.000011567066,0.000091340204,0.000023740136,0.0001241769,0.00004431009,0.0000043110376,0.000044696564,0.00013007694,0.0000076195684],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004627971,0.00007250602,0.012782265,0.0000038987514,0.0000041959015,0.0000015347288,0.00001898585,0.0000058507508,0.9623362,0.000018434357,0.00006307646,0.024646794],"study_design_scores_gemma":[0.0006763525,0.00023333321,0.082570866,0.0000072250914,0.000002359777,0.000029252964,0.0000121451985,0.000017036957,0.8186751,0.00009672233,0.09753488,0.000144738],"about_ca_topic_score_codex":0.0014448522,"about_ca_topic_score_gemma":0.001516386,"teacher_disagreement_score":0.1436611,"about_ca_system_score_codex":0.000008848341,"about_ca_system_score_gemma":0.000017673949,"threshold_uncertainty_score":0.37247455},"labels":[],"label_agreement":null},{"id":"W2140922594","doi":"10.1111/j.1462-5822.2005.00568.x","title":"The amino-terminal non-catalytic region of Salmonella typhimurium SigD affects actin organization in yeast and mammalian cells","year":2005,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"Ministerio de Ciencia y Tecnología; Comisión Interministerial de Ciencia y Tecnología; Comunidad de Madrid","keywords":"Biology; Saccharomyces cerevisiae; Cell biology; Effector; Actin; Yeast; Phosphatase; Dephosphorylation; Internalization; Biochemistry; Phosphorylation; Cell","score_opus":0.003802844942590066,"score_gpt":0.18127404793094698,"score_spread":0.17747120298835692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140922594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984843,0.0006280087,0.00013644542,0.0003118489,0.00017922769,0.00019227895,0.000010864939,0.0000058869427,0.00005114547],"genre_scores_gemma":[0.99872833,0.0003340901,0.00015573454,0.000066802604,0.00014584213,0.000003518238,0.00013547193,0.000021805257,0.00040842855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990997,0.000069492315,0.00021835227,0.0003253722,0.00002184348,0.00026524477],"domain_scores_gemma":[0.99948776,0.000013116092,0.00013238218,0.00027351172,0.00005719806,0.00003604741],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013303747,0.00015582613,0.0001745661,0.000058534617,0.000059577444,0.000013528117,0.00021722435,0.00040387455,0.0000053462545],"category_scores_gemma":[0.000028680455,0.00012749516,0.000031178195,0.00013691385,0.00027578798,0.0000025101235,0.00017706398,0.00011380567,0.000012549882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004225281,0.000038981692,0.00088186754,0.00001827489,0.000013193017,0.0000065824265,0.00002832268,0.0000065204827,0.99612886,0.000013621132,0.0003395637,0.0024819686],"study_design_scores_gemma":[0.00040490442,0.00021188859,0.0017367346,0.000009642201,0.000013588879,0.00011168416,0.00003109703,0.000015978783,0.9757581,0.0000055137207,0.021560967,0.00013993081],"about_ca_topic_score_codex":0.000012495261,"about_ca_topic_score_gemma":0.00007305651,"teacher_disagreement_score":0.021221403,"about_ca_system_score_codex":0.000014595425,"about_ca_system_score_gemma":0.00003825013,"threshold_uncertainty_score":0.5199102},"labels":[],"label_agreement":null},{"id":"W2141724213","doi":"10.1128/jb.182.19.5521-5529.2000","title":"Characterization of <i>ssfR</i> and <i>ssgA</i> , Two Genes Involved in Sporulation of <i>Streptomyces griseus</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute for Catastrophic Loss Reduction; National Science Foundation","keywords":"Streptomyces griseus; Biology; Mutant; Open reading frame; ORFS; Gene; Genetics; Mutation; DNA; Thiostrepton; Point mutation; Operon; Biochemistry; Molecular biology; Peptide sequence; RNA; Streptomyces; Bacteria; Ribosome","score_opus":0.006109493516979883,"score_gpt":0.21827691817908781,"score_spread":0.21216742466210792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141724213","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99889153,0.0005740178,0.00003053644,0.00015321953,0.0001597987,0.00008946951,0.000025789152,0.0000021387639,0.00007347992],"genre_scores_gemma":[0.99402416,0.005153006,0.00047367733,0.000079186844,0.00016511319,0.0000015891741,0.0000644867,0.000012041956,0.000026724623],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99876916,0.00009194055,0.00074676133,0.00016888374,0.000071881856,0.00015136204],"domain_scores_gemma":[0.9990393,0.000012568169,0.0006020588,0.00016873654,0.00013390933,0.00004344272],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024111354,0.0001340641,0.0004012377,0.00012914799,0.00001487278,0.0000058046385,0.00015938243,0.00026618486,0.000044608118],"category_scores_gemma":[0.000022051187,0.000118647506,0.000078191275,0.00011532084,0.00018172353,0.000011493037,0.000051636718,0.000105125386,5.156211e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004132274,0.00007121457,0.041050833,0.000025273797,0.000030913623,0.000002883043,0.000030406574,0.000018049273,0.9389795,0.00001646136,0.000007007602,0.019354232],"study_design_scores_gemma":[0.001086323,0.0007964203,0.11062831,0.000038319,0.00002297449,0.000076839126,0.000020124433,0.000012142553,0.8785135,0.000075566146,0.008620548,0.000108890104],"about_ca_topic_score_codex":0.000021333,"about_ca_topic_score_gemma":0.000036043562,"teacher_disagreement_score":0.06957748,"about_ca_system_score_codex":0.0000067037145,"about_ca_system_score_gemma":0.00006123847,"threshold_uncertainty_score":0.48383048},"labels":[],"label_agreement":null},{"id":"W2141954515","doi":"10.1128/jb.182.9.2402-2410.2000","title":"Insertion Mutagenesis and Membrane Topology Model of the <i>Pseudomonas aeruginosa</i> Outer Membrane Protein OprM","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Cystic Fibrosis Foundation","keywords":"Biology; Pseudomonas aeruginosa; Bacterial outer membrane; Mutagenesis; Membrane protein; Membrane topology; Cell biology; Membrane; Mutation; Microbiology; Topology (electrical circuits); Genetics; Bacteria; Gene; Escherichia coli","score_opus":0.00820610166799503,"score_gpt":0.2092985746534123,"score_spread":0.20109247298541727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141954515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974497,0.0003504988,0.0000937151,0.0015111607,0.00023896761,0.00017480375,0.000020053365,0.0000039360957,0.00015715332],"genre_scores_gemma":[0.99665236,0.0009852332,0.0013149598,0.00040168624,0.00020609653,0.0000056594004,0.000007157527,0.000017903521,0.0004089223],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871475,0.00015690838,0.0005727865,0.0002269121,0.000091523856,0.0002371523],"domain_scores_gemma":[0.99908864,0.000010897511,0.000378148,0.00032942218,0.0001262131,0.000066682165],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025697536,0.00018273712,0.0003911354,0.00006916419,0.000060162198,0.000010470025,0.0003583065,0.00047735756,0.00008226726],"category_scores_gemma":[0.00004526221,0.0001253769,0.00015669144,0.00007711345,0.00037338166,0.000007475891,0.00013287539,0.0001991409,0.0000018091378],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049381633,0.00006273276,0.00039132213,0.00002285142,0.00007846211,0.000004151032,0.000033862765,0.00015530185,0.99216944,0.000061238134,0.00004270546,0.0064841253],"study_design_scores_gemma":[0.0008987254,0.0008361282,0.0030618443,0.000022571294,0.000051771243,0.0005415712,0.000015732528,0.00013304787,0.98549575,0.00022386046,0.008569758,0.00014922253],"about_ca_topic_score_codex":0.000015721047,"about_ca_topic_score_gemma":0.00002529953,"teacher_disagreement_score":0.008527053,"about_ca_system_score_codex":0.000011979474,"about_ca_system_score_gemma":0.000106571824,"threshold_uncertainty_score":0.51127213},"labels":[],"label_agreement":null},{"id":"W2141965413","doi":"10.1128/jb.00282-12","title":"Structural Characterization of CFA/III and Longus Type IVb Pili from Enterotoxigenic Escherichia coli","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Health Canada; National Institutes of Health; Michael Smith Health Research BC","keywords":"Pilus; Pilin; Fimbriae Proteins; Biology; Enterotoxigenic Escherichia coli; Vibrio cholerae; Microbiology; Escherichia coli; Protein filament; Protein subunit; Fimbria; Bacterial adhesin; Biophysics; Bacteria; Biochemistry; Genetics; Gene; Enterotoxin","score_opus":0.00902779603178134,"score_gpt":0.22709023015887106,"score_spread":0.21806243412708973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141965413","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976138,0.0009009101,0.00008431498,0.00008108223,0.0011749504,0.00009489101,0.000031748878,0.0000030552299,0.000015267115],"genre_scores_gemma":[0.9974994,0.0009935214,0.0005591137,0.00010410591,0.0007013222,0.0000013409134,0.000091008755,0.000014831912,0.00003534318],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990302,0.00009173992,0.0004596881,0.0001381599,0.00006114185,0.00021908981],"domain_scores_gemma":[0.99904746,0.000010170982,0.0005206061,0.00017784988,0.00014872901,0.00009520175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000146133,0.0001459325,0.0003308493,0.00005295232,0.000029310766,0.00001093316,0.00016951916,0.00034684443,0.00006105334],"category_scores_gemma":[0.000045639707,0.000120757126,0.00007267298,0.000051817,0.00014978612,0.000011427587,0.0001256856,0.00014334955,0.0000013971454],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046212727,0.00003303942,0.016931795,0.000008330038,0.00011051399,0.0000012909558,0.0000623082,3.7884996e-7,0.98079336,0.000017385119,0.000024574283,0.0015549139],"study_design_scores_gemma":[0.0007104188,0.0011005632,0.2994117,0.000012191933,0.000047884034,0.000092399045,0.00002357173,0.0000067636083,0.6896583,0.000024443787,0.008781163,0.00013059362],"about_ca_topic_score_codex":0.000019966616,"about_ca_topic_score_gemma":0.0000062604895,"teacher_disagreement_score":0.29113507,"about_ca_system_score_codex":0.000010131187,"about_ca_system_score_gemma":0.000043932283,"threshold_uncertainty_score":0.49243328},"labels":[],"label_agreement":null},{"id":"W2142146745","doi":"10.1128/jb.01348-07","title":"Enterobacterial Common Antigen Integrity Is a Checkpoint for Flagellar Biogenesis in<i>Serratia marcescens</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Agencia Nacional de Promoción Científica y Tecnológica; National Research Council Canada; Alberta Glycomics Centre","keywords":"Biology; Flagellum; Swarming motility; Flagellin; Regulon; Serratia marcescens; Microbiology; Biogenesis; Bacterial adhesin; Operon; Virulence; Motility; Bacteria; Cell biology; Mutant; Biofilm; Genetics; Gene; Escherichia coli; Quorum sensing","score_opus":0.013742721263283538,"score_gpt":0.2634951284650515,"score_spread":0.24975240720176797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142146745","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99585146,0.0004750702,0.0013737013,0.00056821445,0.0013779467,0.00023260701,0.00006532945,0.0000046299597,0.000051045376],"genre_scores_gemma":[0.993731,0.0010929727,0.0035457427,0.00057489675,0.0009227911,0.0000038017356,0.00006720423,0.000028327298,0.00003321945],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981053,0.00009581751,0.0009648994,0.00030115925,0.00008431452,0.00044850088],"domain_scores_gemma":[0.9987957,0.000029318744,0.0005454666,0.00030438905,0.00021133202,0.00011378046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001024063,0.00024133548,0.0005263734,0.00014513487,0.00004908098,0.000024685316,0.00042193683,0.000714101,0.00005469999],"category_scores_gemma":[0.00008855808,0.00020908173,0.00027188478,0.00009576988,0.00015434252,0.000008960398,0.00015632923,0.00024081788,0.0000026852806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017386255,0.00012702201,0.012604294,0.000019974266,0.00009510025,0.00001718478,0.00006478223,5.578168e-7,0.98276925,0.000013554721,0.00056228123,0.0019873562],"study_design_scores_gemma":[0.0014362321,0.0019880217,0.059365593,0.000026994912,0.000025450854,0.00026025448,0.00007681279,0.0000033950673,0.87434155,0.00011817362,0.062146056,0.000211476],"about_ca_topic_score_codex":0.000066058805,"about_ca_topic_score_gemma":0.00065889326,"teacher_disagreement_score":0.10842773,"about_ca_system_score_codex":0.00005093114,"about_ca_system_score_gemma":0.00010694655,"threshold_uncertainty_score":0.8526105},"labels":[],"label_agreement":null},{"id":"W2142474397","doi":"10.1038/nature06247","title":"Manipulation of host-cell pathways by bacterial pathogens","year":2007,"lang":"en","type":"review","venue":"Nature","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":537,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Biology; Intracellular; Intracellular parasite; Virulence; Signal transduction; Signalling pathways; Host (biology); Cell; Cell biology; Bacterial cell structure; Immune system; Microbiology; Bacteria; Genetics; Gene","score_opus":0.017172272269154416,"score_gpt":0.27402393149457865,"score_spread":0.25685165922542424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142474397","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0030650937,0.9942136,0.000030812334,0.000008001793,0.00090045726,0.00039192056,0.00090299203,0.000013900886,0.00047321373],"genre_scores_gemma":[0.0021429227,0.99154973,0.000385893,0.00005082539,0.0007032632,0.000011300037,0.0048291394,0.000060931303,0.00026596605],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985758,0.000061300765,0.00046076102,0.0004911227,0.00013758491,0.00027342234],"domain_scores_gemma":[0.9989257,0.0000102543345,0.00038975006,0.00052410935,0.00009186722,0.000058328867],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00016057934,0.0003633641,0.0007071987,0.00009298623,0.00003195529,0.0000149692005,0.00037710986,0.009177457,0.000037514772],"category_scores_gemma":[0.00003194219,0.00030665682,0.00034843304,0.00015276899,0.00006382521,0.0000011384578,0.00017760902,0.0011074633,0.000009940432],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002593732,0.00007455621,0.0000015073754,0.001945403,0.00006654805,0.0000044178155,0.00000246613,3.3907693e-8,0.6055825,0.00004252705,0.0039561256,0.388298],"study_design_scores_gemma":[0.00017304339,0.00019829416,0.000004033336,0.0002837714,0.00013640898,0.000020837304,0.0000017900536,1.3374984e-7,0.06481113,0.0000050987524,0.9340776,0.0002878171],"about_ca_topic_score_codex":0.000002199927,"about_ca_topic_score_gemma":0.0000039212364,"teacher_disagreement_score":0.93012154,"about_ca_system_score_codex":0.00001774483,"about_ca_system_score_gemma":0.00012325983,"threshold_uncertainty_score":0.99993855},"labels":[],"label_agreement":null},{"id":"W2142654521","doi":"10.1111/mmi.12245","title":"The availability of purine nucleotides regulates natural competence by controlling translation of the competence activator <scp>Sxy</scp>","year":2013,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Purine; Regulator; Cell biology; Nucleotide; Activator (genetics); Competence (human resources); Genetics; Biochemistry; Gene; Enzyme","score_opus":0.00320000821717105,"score_gpt":0.17979209660505358,"score_spread":0.1765920883878825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142654521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99395144,0.0044566975,0.00021792603,0.00051598524,0.00024034403,0.00047547385,0.00006355022,0.000009689412,0.00006889575],"genre_scores_gemma":[0.99881625,0.00016748927,0.0006947303,0.00010837284,0.000023516688,0.00001744842,0.000062748935,0.00001634954,0.00009307504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986087,0.0002168368,0.0004369487,0.00035152276,0.000061267056,0.00032468987],"domain_scores_gemma":[0.9987519,0.00009715223,0.00031369645,0.0005984391,0.00020668007,0.000032151413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020346441,0.00019870866,0.0002829249,0.000022446427,0.000116155665,0.000016841437,0.00062946184,0.00029296166,0.000007125751],"category_scores_gemma":[0.00017603143,0.00012418977,0.00017045472,0.0001233709,0.0009879426,0.0000043428795,0.00019412136,0.0001758972,0.0000032719013],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023237395,0.000048948626,0.00051118585,0.000016386894,0.00007734373,1.8742755e-7,0.000019955349,0.0000136044155,0.99764526,0.00011987067,0.0003927658,0.0011312546],"study_design_scores_gemma":[0.00047967074,0.00017791426,0.0016897897,0.000012990433,0.00002055224,0.000015140603,0.000040647214,0.00007514368,0.9787754,0.0001780511,0.018464653,0.000070082344],"about_ca_topic_score_codex":0.00004649779,"about_ca_topic_score_gemma":0.000020986046,"teacher_disagreement_score":0.018869894,"about_ca_system_score_codex":0.000009022551,"about_ca_system_score_gemma":0.000045085733,"threshold_uncertainty_score":0.5064312},"labels":[],"label_agreement":null},{"id":"W2143134890","doi":"10.1074/jbc.m007093200","title":"The Role of the Membrane-spanning Domain of Type I Signal Peptidases in Substrate Cleavage Site Selection","year":2000,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences","keywords":"Signal peptide; Transmembrane domain; Signal peptidase; Biology; Cleavage (geology); Nuclease; Transmembrane protein; Biochemistry; Mutant; Bacillus subtilis; Peptide sequence; Enzyme; Biophysics; Amino acid; Genetics; Bacteria; Receptor; Gene","score_opus":0.007264834831056111,"score_gpt":0.21136532852011983,"score_spread":0.20410049368906372,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143134890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99819785,0.0009635313,0.0000023876037,0.00008860369,0.000032289765,0.000043799184,0.0000066797306,0.0000016787874,0.0006631564],"genre_scores_gemma":[0.99886966,0.00079165254,0.00011014668,0.000017675167,0.00013297575,7.666583e-7,0.000004076516,0.00000490287,0.00006816873],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916923,0.00006328393,0.00040651712,0.000115253555,0.000090862806,0.00015482494],"domain_scores_gemma":[0.99942386,0.000025695866,0.0002987135,0.00013302524,0.000088647066,0.00003004198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028521306,0.000098931705,0.00017633614,0.000010979069,0.000045869918,0.0000080700165,0.00029339516,0.0002957302,0.00006730691],"category_scores_gemma":[0.00006000125,0.000052384265,0.00012220659,0.00014205962,0.00022951947,0.000002080717,0.000052286745,0.00021831502,5.303389e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040437005,0.00005433016,0.008885496,0.0000075287326,0.000023258479,0.0000012333521,0.000011376566,0.00007112258,0.98824155,0.0000063502393,0.0000231953,0.002270204],"study_design_scores_gemma":[0.00025898375,0.00029584064,0.008076747,0.000024203777,0.000007741313,0.00005627754,0.00008422809,0.00001412555,0.98554516,0.0002223474,0.0053511932,0.0000631259],"about_ca_topic_score_codex":0.000006246861,"about_ca_topic_score_gemma":0.0000066025195,"teacher_disagreement_score":0.0053279977,"about_ca_system_score_codex":0.000009063529,"about_ca_system_score_gemma":0.00005712055,"threshold_uncertainty_score":0.22809422},"labels":[],"label_agreement":null},{"id":"W2143427660","doi":"10.1002/1099-1352(200009/10)13:5<309::aid-jmr505>3.0.co;2-r","title":"The role of the carboxyl terminal ?-helical coiled-coil domain in osmosensing by transporter ProP ofEscherichia coli","year":2000,"lang":"en","type":"article","venue":"Journal of Molecular Recognition","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Medical Council of Canada; University of Alberta; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Medical Research Council Canada; Deutsche Forschungsgemeinschaft; University of Guelph","keywords":"Coiled coil; Major facilitator superfamily; Transporter; Escherichia coli; C-terminus; Biochemistry; Chemistry; Amino acid; Biophysics; Cytoplasm; Biology; Gene","score_opus":0.003206172056960535,"score_gpt":0.19170155029463126,"score_spread":0.18849537823767074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143427660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997865,0.0009087877,0.000040841896,0.0005275073,0.00009395075,0.00014528078,0.000019158377,0.0000017837356,0.0003976793],"genre_scores_gemma":[0.9988368,0.00046401614,0.0003783882,0.00015498188,0.00008871985,0.0000033128222,0.000013403858,0.000015309892,0.000045043973],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989016,0.00015194133,0.00044983433,0.00013726194,0.00017477955,0.00018460692],"domain_scores_gemma":[0.9994086,0.00000880799,0.00024777668,0.00018168145,0.00011276503,0.000040340412],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030077694,0.00011975383,0.00016896633,0.000028742486,0.00005848326,0.00001845133,0.00021407042,0.00023858467,0.00001673785],"category_scores_gemma":[0.000028687327,0.000076277815,0.00015950995,0.00010822597,0.00015862088,0.00000387492,0.000022928543,0.0002523529,0.0000013774217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027511333,0.000075262884,0.0001933662,0.000004765468,0.000033655408,0.000011276261,0.00002713079,0.0000037622904,0.9139609,0.0000028683935,0.000053076445,0.08535887],"study_design_scores_gemma":[0.00069974037,0.0003744217,0.0018218037,0.000061675775,0.000036758105,0.00019113654,0.00009023148,0.000013955918,0.976686,0.0007620561,0.01915314,0.000109060005],"about_ca_topic_score_codex":0.00001257985,"about_ca_topic_score_gemma":0.000036545604,"teacher_disagreement_score":0.08524982,"about_ca_system_score_codex":0.000014197776,"about_ca_system_score_gemma":0.00007884978,"threshold_uncertainty_score":0.3110519},"labels":[],"label_agreement":null},{"id":"W2143481959","doi":"10.1128/iai.69.2.917-923.2001","title":"<i>Staphylococcus aureus</i> Cap5O Has UDP-ManNAc Dehydrogenase Activity and Is Essential for Capsule Expression","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Staphylococcus aureus; Escherichia coli; Biology; Bacterial capsule; Microbiology; Dehydrogenase; Recombinant DNA; Mutant; Molecular biology; Enzyme; Biochemistry; Gene; Bacteria; Genetics","score_opus":0.011877739142400076,"score_gpt":0.24688710758846935,"score_spread":0.2350093684460693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143481959","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972528,0.0004538507,0.0014139737,0.00028913192,0.00020455552,0.00022586668,0.000036384332,0.000022395645,0.00010103656],"genre_scores_gemma":[0.997619,0.0017033366,0.00010822496,0.00018154047,0.00015707657,0.00002807921,0.000052285613,0.000013379856,0.00013708764],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993533,0.000050672777,0.00011511663,0.00025394213,0.000041807267,0.0001851627],"domain_scores_gemma":[0.99955225,0.000006123159,0.00006742949,0.00024394254,0.00006141734,0.000068859605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000113043796,0.00014314699,0.00012646217,0.000043844117,0.00033692174,0.000053593994,0.00005792304,0.0003018266,0.000018534834],"category_scores_gemma":[0.000033230765,0.00013414778,0.00005598188,0.000059042763,0.00015696463,0.0000077861405,0.00013969213,0.00011728677,0.0000013858643],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011992249,0.0000860366,0.0009899981,0.000017075636,0.000024024897,5.2093526e-7,0.00003350573,9.96964e-7,0.9922337,0.00000701977,0.0008626864,0.0056245155],"study_design_scores_gemma":[0.00064653915,0.00032736725,0.006967184,0.000006891853,0.000016550288,0.000017211363,0.000013418737,0.000049461567,0.88334525,0.000082711114,0.10837636,0.0001510642],"about_ca_topic_score_codex":0.00041367317,"about_ca_topic_score_gemma":0.00016844913,"teacher_disagreement_score":0.10888846,"about_ca_system_score_codex":0.000006720149,"about_ca_system_score_gemma":0.000027280872,"threshold_uncertainty_score":0.5470388},"labels":[],"label_agreement":null},{"id":"W2143549946","doi":"10.1186/1471-2180-11-141","title":"The non-motile phenotype of Salmonella hha ydgT mutants is mediated through PefI-SrgD","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Ontario Ministry of Research and Innovation; Canadian Institutes of Health Research","keywords":"Biology; Flagellum; Mutant; Phenotype; Virulence; Salmonella enterica; Pathogenicity island; Microbiology; Gene; Motility; Regulator; Regulation of gene expression; Salmonella; Genetics; Cell biology; Bacteria; Escherichia coli","score_opus":0.017246208270258474,"score_gpt":0.22103173429381218,"score_spread":0.2037855260235537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143549946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995311,0.0013746751,0.0003404581,0.00010950569,0.0006366563,0.0002519681,0.00017890641,0.000017969653,0.00177886],"genre_scores_gemma":[0.9959229,0.0010343677,0.0019536412,0.00032093568,0.00014057635,0.000012306848,0.00016567839,0.000030712457,0.0004188878],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99858344,0.000092410824,0.00039449192,0.00045007514,0.000036638783,0.00044295756],"domain_scores_gemma":[0.9989075,0.00003292926,0.00022322133,0.000666801,0.0001252783,0.000044278095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017362542,0.00023244586,0.00027984098,0.000031487773,0.00010803268,0.0000081261505,0.00057954685,0.00064518914,0.00015358765],"category_scores_gemma":[0.00007889533,0.00016652078,0.00012716191,0.00012268999,0.00055395876,0.0000021026747,0.0003259489,0.00013431214,0.00008630639],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021530576,0.000074719224,0.0013695527,0.000013478827,0.00008131057,0.000001377853,0.00013706688,3.072107e-7,0.9946617,0.000117309224,0.002868377,0.00045948036],"study_design_scores_gemma":[0.0005412204,0.0005731992,0.002389155,0.0000072414146,0.00002668148,0.00003888102,0.000091358335,0.000004874654,0.9149603,0.00025303726,0.08090837,0.00020566484],"about_ca_topic_score_codex":0.00008599262,"about_ca_topic_score_gemma":0.00020571002,"teacher_disagreement_score":0.0797014,"about_ca_system_score_codex":0.000008055184,"about_ca_system_score_gemma":0.00011082134,"threshold_uncertainty_score":0.67905205},"labels":[],"label_agreement":null},{"id":"W2143690532","doi":"10.1128/iai.68.11.6281-6288.2000","title":"Molecular Cloning and Analysis of a Putative Siderophore ABC Transporter from <i>Staphylococcus aureus</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council","keywords":"Operon; Biology; Staphylococcus aureus; ATP-binding cassette transporter; Bacillus subtilis; Microbiology; Escherichia coli; Molecular biology; Biochemistry; Transporter; Gene; Bacteria; Genetics","score_opus":0.005003334570153126,"score_gpt":0.22029237912345065,"score_spread":0.21528904455329753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143690532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984962,0.0006594346,0.00038036433,0.000047476216,0.000027114387,0.00006736126,0.00008693704,0.000008622842,0.00022649337],"genre_scores_gemma":[0.99798375,0.0014624823,0.00013571729,0.00011794981,0.000015644546,0.000004254992,0.0002542174,0.0000067263127,0.000019261313],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994694,0.000055815643,0.00015625462,0.00018327715,0.000038819067,0.00009645896],"domain_scores_gemma":[0.99969125,0.000006865867,0.000052952517,0.00017446988,0.000038575126,0.000035865945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006228387,0.00010315691,0.00017595253,0.00007405225,0.00006391874,0.000013800146,0.000041139956,0.00018274643,0.00006256846],"category_scores_gemma":[0.000008139553,0.0000973645,0.000073402676,0.00017905894,0.00014211982,0.0000029338878,0.000026037942,0.000094709074,5.053868e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006206896,0.00003744865,0.0130746225,0.0000042611155,0.00041269587,0.0000010005442,0.0001229494,0.000056007917,0.97508025,0.000008863323,0.0000049027717,0.01113495],"study_design_scores_gemma":[0.00035124947,0.0002457481,0.24600922,0.000004397548,0.00028226097,0.0000015470973,0.000035229357,0.00012457679,0.7491287,0.000096725606,0.0035950856,0.00012528182],"about_ca_topic_score_codex":0.0010788011,"about_ca_topic_score_gemma":0.00014920751,"teacher_disagreement_score":0.2329346,"about_ca_system_score_codex":0.0000028581342,"about_ca_system_score_gemma":0.00001067166,"threshold_uncertainty_score":0.3970409},"labels":[],"label_agreement":null},{"id":"W2143856329","doi":"10.1101/gad.1338905","title":"The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition","year":2005,"lang":"en","type":"article","venue":"Genes & Development","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Tn10; Biology; Transposition (logic); Transposable element; Cell biology; Genetics; Regulator; Gene; Mutant","score_opus":0.007039126695852385,"score_gpt":0.2170138669315514,"score_spread":0.209974740235699,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143856329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9823095,0.0006790532,0.00022665095,0.015618453,0.00026274464,0.0004534732,0.000025886735,0.00002822699,0.00039596303],"genre_scores_gemma":[0.994627,0.00043680464,0.0027568818,0.001357724,0.00030017295,0.00009437418,0.00005211334,0.000018263272,0.0003566956],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988152,0.000042705193,0.00024004733,0.0003597171,0.00016959975,0.00037275255],"domain_scores_gemma":[0.9994085,0.0000069511116,0.000047041976,0.0003909726,0.00005496194,0.0000915781],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000199719,0.00020292313,0.00011007811,0.000017342225,0.00033446375,0.000049025988,0.0003958582,0.0001945645,0.000013073624],"category_scores_gemma":[0.000010640993,0.0001224926,0.00006691061,0.00013209984,0.00006550954,0.000001960817,0.000057886933,0.000071830196,0.00006132007],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015733318,0.00005122102,0.000090314206,0.0000036616245,0.00006524286,0.000001080859,0.00010931361,0.00003825504,0.82409817,0.00076276954,0.00037880725,0.17424384],"study_design_scores_gemma":[0.000113336115,0.00011367727,0.005830267,0.000007874082,0.000006485256,0.0000051004513,0.00001008411,0.0000023798414,0.5289427,0.000043332613,0.4648097,0.00011506645],"about_ca_topic_score_codex":0.000002580091,"about_ca_topic_score_gemma":0.00028585398,"teacher_disagreement_score":0.4644309,"about_ca_system_score_codex":0.000059015645,"about_ca_system_score_gemma":0.00012068758,"threshold_uncertainty_score":0.49951032},"labels":[],"label_agreement":null},{"id":"W2143989921","doi":"10.1016/s0163-7258(00)00064-4","title":"The structure and mechanism of bacterial type I signal peptidases","year":2000,"lang":"en","type":"review","venue":"Pharmacology & Therapeutics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":151,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences","keywords":"Signal peptidase; Proteases; Signal peptide; Bacillus subtilis; Serine; Catalytic triad; Escherichia coli; Biochemistry; Biology; Peptide sequence; Enzyme; Bacteria; Genetics; Gene","score_opus":0.027347976377115616,"score_gpt":0.3177953857794569,"score_spread":0.29044740940234126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143989921","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0067654843,0.99141604,0.000004889334,0.00006657213,0.0010212514,0.00046137464,0.00021969304,0.000011875361,0.00003280167],"genre_scores_gemma":[0.0026512274,0.995912,0.000082486615,0.0002018801,0.00071149674,0.000012735169,0.0002266626,0.00005312511,0.00014835042],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985682,0.00022752894,0.00041529624,0.00038743994,0.000079326746,0.0003222071],"domain_scores_gemma":[0.9992407,0.000052124687,0.00028336336,0.00030059545,0.000070297065,0.000052910636],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00011107783,0.00037553703,0.00065830926,0.00005313135,0.00013322764,0.000025517482,0.0004616424,0.00090451894,0.00022988401],"category_scores_gemma":[0.0000022906584,0.00025033814,0.00016262576,0.0001083742,0.00040579832,0.000001405318,0.00020628113,0.00031387305,0.000004353094],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016058315,0.000035991303,4.815658e-7,0.00037180565,0.0009792726,0.000002360895,0.00001176828,2.2519959e-7,0.2718884,0.00009305926,0.00038669692,0.72606933],"study_design_scores_gemma":[0.00026859972,0.00042433376,4.2029043e-7,0.000070264236,0.0013307616,0.00006264599,0.0000044293215,0.0000021314327,0.054647326,0.00013334164,0.9428211,0.00023468598],"about_ca_topic_score_codex":0.0000016479911,"about_ca_topic_score_gemma":0.000005610263,"teacher_disagreement_score":0.9424344,"about_ca_system_score_codex":0.000011343437,"about_ca_system_score_gemma":0.00022035696,"threshold_uncertainty_score":0.9999949},"labels":[],"label_agreement":null},{"id":"W2144474352","doi":"10.1128/jb.183.20.5885-5895.2001","title":"In Vivo Synthesis of the Periplasmic Domain of TonB Inhibits Transport through the FecA and FhuA Iron Siderophore Transporters of <i>Escherichia coli</i>","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Canadian Institutes of Health Research; Deutsche Forschungsgemeinschaft","keywords":"Periplasmic space; Ferrichrome; Colicin; Bacterial outer membrane; Biology; Siderophore; Escherichia coli; Chemiosmosis; Cytoplasm; Enterobactin; Transport protein; Membrane transport protein; Biochemistry; Signal peptide; Permease; Membrane protein; Biophysics; Peptide sequence; Membrane; Gene; ATP synthase","score_opus":0.005603655317028888,"score_gpt":0.20457850316407172,"score_spread":0.19897484784704284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144474352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99734396,0.000528613,0.0000405987,0.0015569156,0.00022861647,0.00014335803,0.00004662551,9.552647e-7,0.00011033389],"genre_scores_gemma":[0.9970966,0.0021986624,0.000422991,0.00017210451,0.00006378294,0.0000032176024,0.0000021354401,0.000013949512,0.00002654592],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860066,0.00013955575,0.0007891558,0.00016429002,0.00011669933,0.000189619],"domain_scores_gemma":[0.99888253,0.000037775462,0.0006634392,0.00026669813,0.00011882917,0.000030723048],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032829223,0.00016154048,0.0004997885,0.000051980453,0.000028966026,0.0000025556412,0.00034089878,0.0003489465,0.000028505625],"category_scores_gemma":[0.000040262537,0.00009853584,0.0001865921,0.00014594455,0.0006248129,0.000007151164,0.000045036053,0.00019859472,7.317325e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000655102,0.000088943154,0.01055457,0.000045120574,0.00006990615,0.000006913432,0.00033525444,0.000027066279,0.98779815,0.00004554897,0.000048162998,0.00032527844],"study_design_scores_gemma":[0.00072477903,0.0008283147,0.05382098,0.00006524551,0.000066840315,0.00018922937,0.00034734665,0.0000014079388,0.9336069,0.00015087855,0.01009574,0.00010229363],"about_ca_topic_score_codex":0.00006993907,"about_ca_topic_score_gemma":0.00019286509,"teacher_disagreement_score":0.054191187,"about_ca_system_score_codex":0.000009447225,"about_ca_system_score_gemma":0.00010853164,"threshold_uncertainty_score":0.4018175},"labels":[],"label_agreement":null},{"id":"W2144562098","doi":"10.1046/j.1365-2958.2001.02420.x","title":"Cloning and functional characterization of the <i>Pseudomonas aeruginosa rhlC</i> gene that encodes rhamnosyltransferase 2, an enzyme responsible for di‐rhamnolipid biosynthesis","year":2001,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":270,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Consejo Nacional de Ciencia y Tecnología; National Institute of Environmental Health Sciences; Austrian Science Fund","keywords":"Operon; Rhamnolipid; Complementation; Biology; Mutant; rpoN; Rhamnose; Insertional mutagenesis; Gene; Pseudomonas aeruginosa; Biochemistry; Genetics; Promoter; Bacteria; Gene expression; Galactose","score_opus":0.010330235046744535,"score_gpt":0.20510578247638003,"score_spread":0.1947755474296355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144562098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98725677,0.00046603818,0.010519388,0.0007102512,0.0003159616,0.0004079087,0.00028563917,0.000017895827,0.000020142736],"genre_scores_gemma":[0.99688274,0.00048581962,0.0010890218,0.0005456464,0.00013305501,0.000041293566,0.00070400594,0.00003442789,0.00008398489],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986185,0.0001819475,0.00027837662,0.0005315558,0.00004905069,0.0003405749],"domain_scores_gemma":[0.9992012,0.000024060424,0.00013723422,0.0004715105,0.000106803105,0.000059242622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021641166,0.00024154114,0.00025482228,0.000085051506,0.00014821,0.000021469185,0.00024707895,0.0004837567,0.000014233684],"category_scores_gemma":[0.000054196335,0.0001973826,0.00013835402,0.00012753252,0.0003148043,0.0000065265535,0.00014471784,0.0001001671,0.000001257036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004294542,0.00007599547,0.0012390215,0.0000149853895,0.00006924614,0.0000022608674,0.000020942658,0.000012252063,0.99702376,0.00019888442,0.00002397433,0.0008892388],"study_design_scores_gemma":[0.00061821874,0.0003914731,0.0029099036,0.000010919001,0.000052097497,0.00017177983,0.000014444026,0.000023018289,0.9729366,0.000067023466,0.022577835,0.00022672837],"about_ca_topic_score_codex":0.000010599587,"about_ca_topic_score_gemma":0.000029700694,"teacher_disagreement_score":0.024087185,"about_ca_system_score_codex":0.000010775617,"about_ca_system_score_gemma":0.00008793939,"threshold_uncertainty_score":0.8049029},"labels":[],"label_agreement":null},{"id":"W2144695459","doi":"10.1128/jb.185.18.5563-5572.2003","title":"A Dual Binding Site for Integration Host Factor and the Response Regulator CtrA inside the <i>Caulobacter crescentus</i> Replication Origin","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Caulobacter crescentus; Biology; Origin of replication; DNA replication; Binding site; Plasmid; DNA-binding protein; Genetics; Cell cycle; Transcription factor; DNA; Molecular biology; Gene","score_opus":0.012480210995938597,"score_gpt":0.25298191358364003,"score_spread":0.24050170258770143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144695459","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940621,0.00040654466,0.0007339621,0.003915924,0.0004939109,0.00032440972,0.0000465336,0.000004009061,0.000012592346],"genre_scores_gemma":[0.99758196,0.0005739615,0.000793272,0.00053144014,0.00033442504,0.0000150853575,0.0000230885,0.000015981594,0.0001307673],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860805,0.00044359406,0.00044709796,0.00023259019,0.000066361055,0.00020229664],"domain_scores_gemma":[0.99874663,0.00015326381,0.00046658763,0.0003953916,0.00018850238,0.00004964444],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012129404,0.00015102548,0.00024181984,0.00006366669,0.00014244807,0.000055003708,0.00016978092,0.00028803927,0.000009298994],"category_scores_gemma":[0.0009875816,0.0000810502,0.00012719385,0.000072106195,0.0003075283,0.000008679417,0.0000533529,0.00019718065,0.0000017731448],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031234098,0.00001887673,0.00050509,0.000003911554,0.000060505718,0.0000011124068,0.00008079408,5.9284577e-7,0.9942255,0.00034376973,0.0005285685,0.0011078576],"study_design_scores_gemma":[0.0026177415,0.0012891722,0.026943896,0.000020000749,0.000066786044,0.0007340155,0.00010601689,0.000014000502,0.6315411,0.00022377919,0.3362737,0.00016979843],"about_ca_topic_score_codex":0.0000027098502,"about_ca_topic_score_gemma":0.000015441585,"teacher_disagreement_score":0.36268443,"about_ca_system_score_codex":0.000023204797,"about_ca_system_score_gemma":0.000112970236,"threshold_uncertainty_score":0.33051315},"labels":[],"label_agreement":null},{"id":"W2144831477","doi":"10.1111/j.1365-2958.2012.08131.x","title":"Relaxosome function and conjugation regulation in F‐like plasmids – a structural biology perspective","year":2012,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Biology; Bacterial conjugation; Plasmid; DNA; Operon; RNA; Helicase; Cell biology; Genetics; Gene; Escherichia coli","score_opus":0.011235935699241589,"score_gpt":0.2594191730895281,"score_spread":0.24818323739028653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144831477","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01699487,0.98090535,0.00030439577,0.000050796647,0.00078127347,0.0007146363,0.00012572279,0.00002433803,0.0000985859],"genre_scores_gemma":[0.0739268,0.92122495,0.0004177792,0.00013647812,0.00029439206,0.000096036776,0.003720725,0.00008435762,0.00009850039],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.997605,0.00041311653,0.00054333505,0.0008977115,0.000031697306,0.0005091195],"domain_scores_gemma":[0.99903524,0.000018866847,0.0003361634,0.00045239343,0.00008655865,0.00007075589],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00019718196,0.0005151581,0.00091169187,0.00031850766,0.00006385284,0.00002033513,0.00022700819,0.0022232805,0.000029556859],"category_scores_gemma":[0.000042103675,0.0004668681,0.000205263,0.0002148551,0.00035015942,0.00000489474,0.00031144943,0.00040382732,0.000020613563],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009108665,0.000039856553,0.00007780836,0.00053796783,0.00028201306,0.0000042523584,0.000022345052,0.0000016193151,0.8606889,0.0052194325,0.000051022143,0.13298367],"study_design_scores_gemma":[0.0006793989,0.00061001873,0.00010969837,0.00022817274,0.0003805994,0.00039685992,0.00002157454,0.0000029738003,0.0047714575,0.00112889,0.9909698,0.000700555],"about_ca_topic_score_codex":0.000033256078,"about_ca_topic_score_gemma":0.00005317452,"teacher_disagreement_score":0.99091876,"about_ca_system_score_codex":0.00010306577,"about_ca_system_score_gemma":0.000112509006,"threshold_uncertainty_score":0.99977833},"labels":[],"label_agreement":null},{"id":"W2145155930","doi":"10.1128/jb.187.7.2532-2536.2005","title":"Soj Antagonizes Spo0A Activation of Transcription in <i>Bacillus subtilis</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Bacillus subtilis; Transcription (linguistics); Transcription factor; Promoter; Genetics; Cell biology; DNA-binding protein; Molecular biology; Gene; Gene expression; Bacteria","score_opus":0.009029437786593127,"score_gpt":0.22621841473799073,"score_spread":0.2171889769513976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145155930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805164,0.00033608306,0.000299327,0.0008571092,0.00028376468,0.00006775938,0.000009060761,0.0000024295857,0.00009282809],"genre_scores_gemma":[0.99728763,0.0009036553,0.001199283,0.00015220037,0.00039072506,0.0000013594959,0.000021005299,0.000010594804,0.000033551154],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989747,0.00008014408,0.0005657655,0.00014116515,0.000066365596,0.0001718598],"domain_scores_gemma":[0.999302,0.0000100556235,0.0003736534,0.00015021641,0.00012608359,0.000037989776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002690191,0.00011539426,0.0002893193,0.00015281166,0.000015212776,0.0000057943694,0.00018503939,0.0003511593,0.000033173714],"category_scores_gemma":[0.000053167223,0.00010047471,0.00010724427,0.000091124035,0.00011036232,0.000010070938,0.00003274982,0.00016078178,0.0000015541149],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052500074,0.00009117566,0.001908537,0.000010936109,0.000028993294,0.0000021364463,0.00004284534,0.000055186123,0.9839175,0.000041297993,0.000089921195,0.013286476],"study_design_scores_gemma":[0.001027208,0.0010186825,0.02585584,0.000021663396,0.000012359321,0.00011981793,0.00004154106,0.000013999371,0.93007416,0.00006280774,0.04165143,0.00010052322],"about_ca_topic_score_codex":0.000010315859,"about_ca_topic_score_gemma":0.000043419568,"teacher_disagreement_score":0.053843368,"about_ca_system_score_codex":0.000022115373,"about_ca_system_score_gemma":0.00007856399,"threshold_uncertainty_score":0.40972397},"labels":[],"label_agreement":null},{"id":"W2145401678","doi":"10.1007/s00438-008-0389-3","title":"Control of RpoS in global gene expression of Escherichia coli in minimal media","year":2008,"lang":"en","type":"article","venue":"Molecular Genetics and Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"rpoS; Sigma factor; Regulon; Biology; Mutant; Escherichia coli; Gene; Genetics; Operon; Gene expression; Wild type; Cell biology; Promoter","score_opus":0.005273907161786683,"score_gpt":0.20092794504173653,"score_spread":0.19565403787994984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145401678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994041,0.0043576136,0.0011220839,0.000038930822,0.000074727825,0.00022595374,0.00008503129,0.000002374755,0.000052256626],"genre_scores_gemma":[0.99082446,0.0024200305,0.0065981755,0.00006050167,0.000032198477,0.000008700031,0.000036017944,0.000017104681,0.0000028251616],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99882746,0.00005750068,0.0004459789,0.0003259344,0.00009938035,0.00024373982],"domain_scores_gemma":[0.9994189,0.0000074088366,0.0001464167,0.00030381817,0.000059137412,0.000064294225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011886836,0.00017318218,0.00031714397,0.00007037558,0.000017418863,0.0000040023183,0.00019965191,0.00035083262,0.0000029168268],"category_scores_gemma":[0.00003306712,0.00018285736,0.000063652864,0.0001426797,0.00022575998,0.000001275404,0.00016626409,0.000080534315,3.647811e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019096438,0.00010305397,0.024067014,0.000015524463,0.000015168851,0.000018011902,0.00005434725,0.00034660444,0.97459215,0.00004619933,0.000005514901,0.000545464],"study_design_scores_gemma":[0.0015452297,0.0003161126,0.0745585,0.000011329792,0.000010876542,0.00001557467,0.000023265038,0.00017593658,0.9224763,0.00015379244,0.00054482446,0.00016827589],"about_ca_topic_score_codex":0.000043449963,"about_ca_topic_score_gemma":0.00008618516,"teacher_disagreement_score":0.052115843,"about_ca_system_score_codex":0.000015165517,"about_ca_system_score_gemma":0.00011224524,"threshold_uncertainty_score":0.7456707},"labels":[],"label_agreement":null},{"id":"W2145918716","doi":"10.1128/aac.49.5.1782-1786.2005","title":"Mutations in PA3574 ( <i>nalD</i> ) Lead to Increased MexAB-OprM Expression and Multidrug Resistance in Laboratory and Clinical Isolates of <i>Pseudomonas aeruginosa</i>","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Cystic Fibrosis Foundation","keywords":"Pseudomonas aeruginosa; Microbiology; Multiple drug resistance; Pseudomonadales; Efflux; Pseudomonadaceae; Biology; Mutation; Drug resistance; Bacteria; Genetics; Gene","score_opus":0.0072625218737600635,"score_gpt":0.25790641356553906,"score_spread":0.250643891691779,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145918716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99753124,0.00035203542,0.00002197003,0.001770827,0.000035541783,0.00020536748,0.0000479083,0.0000053927592,0.000029708111],"genre_scores_gemma":[0.98845685,0.004918782,0.0038700206,0.0026000277,0.00006503705,0.000004772019,0.00002501388,0.000015719508,0.000043766697],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902856,0.00005361947,0.0003362409,0.0003636992,0.000039503982,0.00017835156],"domain_scores_gemma":[0.9996472,0.000016595712,0.00008332938,0.00015515056,0.000034147128,0.00006355784],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016800224,0.00014689905,0.0002313964,0.00006639201,0.00003623092,0.000017775368,0.000086115826,0.00023352321,0.000004759839],"category_scores_gemma":[0.000020703023,0.00013778033,0.000026727603,0.00010397859,0.00016128231,0.0000074575446,0.000082587314,0.00009782682,5.514739e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002561713,0.00015994477,0.04191581,0.000019455214,0.000013332964,0.0000016959713,0.00013135788,0.0000015770072,0.95280194,0.0000062634217,0.0010713052,0.0036211659],"study_design_scores_gemma":[0.0026918987,0.00015776417,0.08854539,0.00008840915,0.000008036342,0.0000032570938,0.000039883937,0.000027105465,0.8717649,0.000020444722,0.036436617,0.00021628248],"about_ca_topic_score_codex":0.00006743835,"about_ca_topic_score_gemma":0.0008081918,"teacher_disagreement_score":0.08103701,"about_ca_system_score_codex":0.0000055625133,"about_ca_system_score_gemma":0.000027293228,"threshold_uncertainty_score":0.56185186},"labels":[],"label_agreement":null},{"id":"W2145982040","doi":"10.1016/s0378-1097(02)00735-8","title":"Role of the Pseudomonas aeruginosa las and rhl quorum-sensing systems in rhlI regulation","year":2002,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; Federation of European Microbiological Societies; National Institute for Health and Care Research; National Institutes of Health; Cystic Fibrosis Foundation","keywords":"Quorum sensing; Pseudomonas aeruginosa; Biology; Population; Regulator; Regulation of gene expression; Gene; Microbiology; Virulence; Genetics; Bacteria; Medicine","score_opus":0.0049993350585277934,"score_gpt":0.1711230056692629,"score_spread":0.1661236706107351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145982040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99587226,0.00176346,0.000023470166,0.0017238938,0.00032557992,0.00019029995,0.000019386354,0.0000075862913,0.0000740634],"genre_scores_gemma":[0.99901545,0.0001451926,0.00019099127,0.00043922424,0.00009945072,0.0000029487137,0.00002943524,0.0000123686905,0.00006494524],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909985,0.00010561674,0.00024426737,0.00029081834,0.00002551497,0.00023391674],"domain_scores_gemma":[0.9995106,0.000010486894,0.00012792918,0.00030752452,0.000023718248,0.000019745861],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010479524,0.00013606882,0.00017553913,0.00005892826,0.00004987436,0.0000105280515,0.00015730479,0.00032937623,0.00000598851],"category_scores_gemma":[0.000020423598,0.00010772576,0.00004906107,0.00009366034,0.00030707745,0.0000019783524,0.00014402531,0.000118455064,0.0000037605091],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014973375,0.000014808477,0.0029565303,0.0000075100957,0.000020080912,7.819783e-7,0.00004358377,0.000044396176,0.99467534,0.0000394974,0.00088382926,0.0012986432],"study_design_scores_gemma":[0.0005533267,0.000097066026,0.013749027,0.00003489992,0.00001361182,0.00014942288,0.00006305815,0.00017376106,0.94787174,0.000023918863,0.0370682,0.00020197994],"about_ca_topic_score_codex":0.0000730714,"about_ca_topic_score_gemma":0.0000813492,"teacher_disagreement_score":0.04680364,"about_ca_system_score_codex":0.000012197442,"about_ca_system_score_gemma":0.000007294915,"threshold_uncertainty_score":0.4392929},"labels":[],"label_agreement":null},{"id":"W2146496228","doi":"10.1046/j.1365-2958.2003.03397.x","title":"Cell shape, division and development: the 2002 American Society for Microbiology (ASM) conference on prokaryotic development","year":2003,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Science Foundation; National Institutes of Health; Uppsala Universitet; McMaster University; U.S. Department of Energy","keywords":"Caulobacter crescentus; Biology; Myxococcus xanthus; Multicellular organism; Bacillus subtilis; Cell division; Bacterial cell structure; Computational biology; Cell biology; Microbiology; Cell cycle; Cell; Genetics; Bacteria; Gene","score_opus":0.011191560484215627,"score_gpt":0.21344220771313416,"score_spread":0.20225064722891853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146496228","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99270725,0.0011324718,0.004567945,0.00041746083,0.00019215427,0.0006924919,0.000039949045,0.000021270884,0.00022899601],"genre_scores_gemma":[0.97794867,0.00015790916,0.019134244,0.0017790232,0.00003154412,0.000113928545,0.00035754137,0.00004171834,0.0004354059],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981654,0.00013155564,0.00034130525,0.0007482275,0.000032027696,0.00058143685],"domain_scores_gemma":[0.9992372,0.000026396889,0.00017370393,0.0003824271,0.000109236826,0.00007103745],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027972867,0.0003469566,0.00030303595,0.000047064645,0.00026920423,0.000030710216,0.00033760024,0.00041360434,0.00003060546],"category_scores_gemma":[0.00003777337,0.00026212307,0.000117010284,0.000096140546,0.00054195937,0.0000017277989,0.00022194315,0.0001824555,0.00002704234],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004799253,0.000088079774,0.000088523266,0.000020737358,0.00010134453,0.0000015909391,0.0000719212,0.000003824483,0.9929568,0.00025950995,0.0015737846,0.004785902],"study_design_scores_gemma":[0.0004964908,0.0004003916,0.00011450758,0.00000616559,0.000011679335,0.000040143863,0.000048813294,0.0000046971336,0.6265392,0.000015244942,0.37207893,0.00024373806],"about_ca_topic_score_codex":0.0000020730022,"about_ca_topic_score_gemma":0.000011731613,"teacher_disagreement_score":0.37050515,"about_ca_system_score_codex":0.000025274878,"about_ca_system_score_gemma":0.00020569641,"threshold_uncertainty_score":0.9999831},"labels":[],"label_agreement":null},{"id":"W2146581807","doi":"10.1128/aem.02186-09","title":"Adaptation of the Highly Productive T7 Expression System to <i>Streptomyces lividans</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"T7 RNA polymerase; Biology; Streptomyces; Streptomycetaceae; Actinomycetales; Expression vector; Adaptation (eye); Gene; Gene expression; Genetics; Bacteria; Molecular biology; Bacteriophage; Microbiology; Escherichia coli; Recombinant DNA","score_opus":0.002485648857885867,"score_gpt":0.156636391244453,"score_spread":0.15415074238656712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146581807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988946,0.00024110625,0.00009896492,0.00021348993,0.00009507142,0.0002606293,0.00005346517,0.000007044485,0.00013567624],"genre_scores_gemma":[0.99895984,0.00007345761,0.0005343153,0.00020657999,0.000071489674,0.0000117324735,0.00008240654,0.0000066696794,0.000053493128],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937105,0.000024584533,0.0001427952,0.00029960126,0.000023282671,0.00013865501],"domain_scores_gemma":[0.9996689,0.0000028764096,0.00007408013,0.00022232365,0.0000035559879,0.0000282572],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000045202538,0.000114593495,0.00011878363,0.000018085204,0.000060138096,0.0000038918015,0.00013362711,0.00017393199,0.0000026546466],"category_scores_gemma":[0.0000023588602,0.00008110164,0.000030107301,0.000033293967,0.00013438413,0.0000011198314,0.00013627327,0.00005003912,0.0000035243506],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005233263,0.00003897123,0.0002113706,0.000005563213,0.000009034261,1.2499233e-7,0.000061368584,0.000029707648,0.99467736,0.00009976413,0.000108290114,0.0047060973],"study_design_scores_gemma":[0.00020851196,0.00029003943,0.004272722,0.0000089202495,0.00000957317,0.000019912182,0.00033753432,0.0000016900063,0.9811193,0.000014489873,0.013619857,0.00009745859],"about_ca_topic_score_codex":0.0000037770799,"about_ca_topic_score_gemma":0.0000023276395,"teacher_disagreement_score":0.013558084,"about_ca_system_score_codex":0.000010415734,"about_ca_system_score_gemma":0.0000070259052,"threshold_uncertainty_score":0.3307229},"labels":[],"label_agreement":null},{"id":"W2146731040","doi":"10.1146/annurev.micro.55.1.591","title":"Periplasmic Stress and ECF Sigma Factors","year":2001,"lang":"en","type":"review","venue":"Annual Review of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":386,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Periplasmic space; Sigma factor; Cell envelope; Cell biology; Bacterial outer membrane; Biology; Response regulator; Pilus; Regulator; Inner membrane; Mutant; Biochemistry; Escherichia coli; Gene; RNA polymerase","score_opus":0.012551421994008449,"score_gpt":0.2836827901909265,"score_spread":0.2711313681969181,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146731040","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009825971,0.9959963,0.000006395691,0.00004104636,0.00026424442,0.0006390462,0.0019161125,0.000011113785,0.00014312282],"genre_scores_gemma":[0.00005840236,0.99604577,0.00011030838,0.0001742287,0.00016411163,0.000027974642,0.0030591292,0.000051765324,0.00030832135],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977512,0.00024818708,0.00084357365,0.00072152755,0.000040189938,0.00039531596],"domain_scores_gemma":[0.9985448,0.000036870842,0.000590738,0.0006223749,0.00012338943,0.00008178881],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00020323519,0.00056301284,0.0020420325,0.00010314233,0.000044300636,0.0000073698466,0.0005240664,0.0012242519,0.000078773926],"category_scores_gemma":[0.00013564475,0.00041402865,0.00047111997,0.0001723217,0.00040347886,0.0000020259442,0.0005039952,0.00028583675,0.0000124504395],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011881094,0.00009836772,0.000020821371,0.10388399,0.00047477207,0.000008448212,0.000013104082,3.993813e-8,0.015028646,0.000048006714,0.005437935,0.874974],"study_design_scores_gemma":[0.00010159053,0.00042397817,0.0000021265719,0.020396963,0.00038734145,0.00025057138,0.000014462934,1.1595163e-8,0.0019917206,0.0000027308263,0.9760387,0.00038982145],"about_ca_topic_score_codex":0.000011564625,"about_ca_topic_score_gemma":0.000016125881,"teacher_disagreement_score":0.9706007,"about_ca_system_score_codex":0.000014070333,"about_ca_system_score_gemma":0.00018435852,"threshold_uncertainty_score":0.99983114},"labels":[],"label_agreement":null},{"id":"W2147415910","doi":"10.1002/cmdc.200700094","title":"Naphthyl Tetronic Acids as Multi‐Target Inhibitors of Bacterial Peptidoglycan Biosynthesis","year":2007,"lang":"en","type":"article","venue":"ChemMedChem","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"","keywords":"Peptidoglycan; Biosynthesis; Chemistry; Biochemistry; Enzyme; Peptide; Stereochemistry; IC50; Escherichia coli; Combinatorial chemistry; In vitro; Gene","score_opus":0.008021629784548444,"score_gpt":0.23570264240172734,"score_spread":0.22768101261717888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147415910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99740726,0.00038071556,0.00019634544,0.00017160854,0.0005406579,0.0001717714,0.000035177123,0.000030379235,0.0010660853],"genre_scores_gemma":[0.9944548,0.0001275832,0.003974453,0.000083316954,0.0006825598,0.00000810469,0.00015351434,0.000044430966,0.00047126153],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984114,0.000020889067,0.0004312255,0.00047354418,0.00014862343,0.0005142914],"domain_scores_gemma":[0.9990153,0.000016560442,0.00018820979,0.0005308288,0.00010523471,0.00014391006],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032238453,0.00026992444,0.0002911192,0.000101156176,0.0000551335,0.000014827029,0.00036917333,0.0006412018,0.00017040432],"category_scores_gemma":[0.00018615856,0.0002578796,0.00018064144,0.0001785006,0.00030486434,0.0000034859793,0.00024280157,0.00014627517,0.000027904282],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020572681,0.00013821406,0.0011462005,0.000023915534,0.00006940767,0.0000041383464,0.000037666076,4.2411133e-7,0.9929234,0.000032041917,0.00044534224,0.0049735513],"study_design_scores_gemma":[0.0007359586,0.00034901622,0.0012900641,0.000015404523,0.00001974273,0.000019614376,0.00011970524,0.0000023855878,0.94210213,0.0000403236,0.05502447,0.00028120674],"about_ca_topic_score_codex":0.000023274082,"about_ca_topic_score_gemma":0.00004169684,"teacher_disagreement_score":0.054579128,"about_ca_system_score_codex":0.000031588825,"about_ca_system_score_gemma":0.00012919167,"threshold_uncertainty_score":0.99998736},"labels":[],"label_agreement":null},{"id":"W2147547726","doi":"10.1128/jb.00359-10","title":"Complete Nucleotide Sequence of TOL Plasmid pDK1 Provides Evidence for Evolutionary History of IncP-7 Catabolic Plasmids","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Plasmid; Biology; Genetics; T-DNA Binary system; Transposable element; Gene; Horizontal gene transfer; Homologous recombination; Pseudomonas putida; Nucleic acid sequence; Molecular biology; Mutant; Genome; Recombinant DNA; Vector (molecular biology)","score_opus":0.03451057412465858,"score_gpt":0.27086428885773794,"score_spread":0.23635371473307937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147547726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964951,0.0010590116,0.00018598304,0.00038089106,0.00148322,0.000190817,0.00016516681,0.0000039171464,0.000035880552],"genre_scores_gemma":[0.98915595,0.0004967542,0.009696362,0.00011307406,0.00038826754,0.000008329273,0.000040651375,0.000018568964,0.00008202936],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985642,0.00007661774,0.0007879337,0.00023027605,0.00010295258,0.00023806481],"domain_scores_gemma":[0.9979815,0.00010356448,0.0009971736,0.00033584412,0.00050266134,0.00007925803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003629868,0.00016919576,0.0004828802,0.0001416266,0.00002750524,0.000003672343,0.0005115415,0.00042024162,0.000042323994],"category_scores_gemma":[0.0006153867,0.0001489447,0.00019791276,0.00005615333,0.0007024447,0.000013355481,0.00015266855,0.0002596482,0.0000011995786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082555576,0.00007520414,0.0024896266,0.00008651274,0.00007723472,0.0000028800673,0.000035546713,0.000011042869,0.99317753,0.00027198758,0.0017425659,0.0012043032],"study_design_scores_gemma":[0.0011733329,0.0038521783,0.022995014,0.00011153528,0.0000847156,0.00056386675,0.00003146674,0.00010224659,0.66321445,0.00035227527,0.30724365,0.00027530413],"about_ca_topic_score_codex":0.00003465243,"about_ca_topic_score_gemma":0.00004962815,"teacher_disagreement_score":0.32996312,"about_ca_system_score_codex":0.00004613404,"about_ca_system_score_gemma":0.00069757144,"threshold_uncertainty_score":0.6073789},"labels":[],"label_agreement":null},{"id":"W2147806270","doi":"10.1002/bab.1423","title":"Vector promoters used in <i>Klebsiella pneumoniae</i>","year":2015,"lang":"en","type":"article","venue":"Biotechnology and Applied Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China; Petroleum Technology Alliance Canada","keywords":"Klebsiella pneumoniae; Promoter; Reporter gene; lac operon; Gene expression; Gene; Biology; Microbiology; Escherichia coli; Chemistry; Molecular biology; Genetics","score_opus":0.009070864117106645,"score_gpt":0.21104607070850348,"score_spread":0.20197520659139684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147806270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99611956,0.00066008174,0.000049257298,0.00190701,0.00011662164,0.00021969863,0.000016740376,0.00007721446,0.00083382556],"genre_scores_gemma":[0.99830365,0.00021502003,0.0008461811,0.00018890084,0.00012729297,0.000043795764,0.00007625899,0.000026699088,0.0001722149],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985326,0.000015272792,0.00025941932,0.00068712543,0.00009334339,0.00041225817],"domain_scores_gemma":[0.9992473,0.0000053906997,0.00008609477,0.00050716003,0.00002585664,0.00012817458],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00018990916,0.00026939157,0.0002507792,0.00008151812,0.000045809582,0.00002213533,0.0003220456,0.0014551998,0.0000042080446],"category_scores_gemma":[0.00005189714,0.00026497626,0.00004009385,0.00021389558,0.00043541548,0.0000018723904,0.00033728057,0.00029547277,0.000011548919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009055561,0.000073552605,0.00092912867,0.000018578117,0.000019616878,0.000006521481,0.000016156351,0.0000018103361,0.9949558,0.00039070752,0.00041482592,0.0030827678],"study_design_scores_gemma":[0.001012337,0.00019180466,0.00026322814,0.000009889032,0.000008980621,0.00006908423,0.00017564461,0.00000753325,0.98114604,0.00028752288,0.01650541,0.0003225196],"about_ca_topic_score_codex":0.00000766028,"about_ca_topic_score_gemma":0.000018511144,"teacher_disagreement_score":0.016090585,"about_ca_system_score_codex":0.000024647534,"about_ca_system_score_gemma":0.00009814363,"threshold_uncertainty_score":0.9999803},"labels":[],"label_agreement":null},{"id":"W2148325233","doi":"10.1146/annurev-biochem-061809-112742","title":"Structural Perspective of Peptidoglycan Biosynthesis and Assembly","year":2012,"lang":"en","type":"review","venue":"Annual Review of Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":329,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Peptidoglycan; Cell wall; Bacterial cell structure; Glycan; Biosynthesis; Biology; Cell biology; Lysis; Biochemistry; Bacteria; Microbiology; Enzyme; Genetics; Glycoprotein","score_opus":0.015145910923943127,"score_gpt":0.3043917259054418,"score_spread":0.28924581498149865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148325233","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015965032,0.99662155,9.77944e-7,0.00004704559,0.00009535933,0.0003601618,0.0008146289,0.0000063951684,0.0004573533],"genre_scores_gemma":[0.0032855633,0.995623,0.0002758277,0.00003690813,0.00027975385,0.000020759722,0.00030256627,0.00004360049,0.00013200633],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99817055,0.0000858894,0.00075978786,0.0005327622,0.00015647852,0.000294535],"domain_scores_gemma":[0.99801326,0.000027261549,0.0008486672,0.0007058471,0.00029224288,0.00011270866],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025637483,0.0004665641,0.0016122343,0.00005758744,0.00002810952,0.000005742986,0.00044275835,0.0008222021,0.000033223663],"category_scores_gemma":[0.00025445657,0.00037113883,0.000520441,0.00017761042,0.00037118394,0.000003042927,0.000387897,0.0002028834,0.000002359916],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012828613,0.000051036848,0.0000040992704,0.15868796,0.00044697715,0.0000011851254,0.000015517931,3.33512e-9,0.044056743,0.000076732445,0.0005310016,0.79611593],"study_design_scores_gemma":[0.00009207894,0.00018437313,0.0000040617338,0.027853103,0.0012045163,0.00011331791,0.000082215745,4.8691625e-8,0.10732233,0.000009224855,0.86266434,0.00047041694],"about_ca_topic_score_codex":0.000017822365,"about_ca_topic_score_gemma":0.0000013879447,"teacher_disagreement_score":0.8621333,"about_ca_system_score_codex":0.00002468892,"about_ca_system_score_gemma":0.00024846088,"threshold_uncertainty_score":0.99987406},"labels":[],"label_agreement":null},{"id":"W2148546359","doi":"10.1088/1478-3975/4/3/001","title":"Modeling partitioning of Min proteins between daughter cells after septation in<i>Escherichia coli</i>","year":2007,"lang":"en","type":"article","venue":"Physical Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Oscillation (cell signaling); Cell division; Daughter; Cardiolipin; Fraction (chemistry); Process (computing)","score_opus":0.010082308932837626,"score_gpt":0.2526511281418784,"score_spread":0.24256881920904078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148546359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99099874,0.00006961783,0.008461323,0.00007299937,0.0000617565,0.00018014073,0.000027689557,0.000009117799,0.00011859199],"genre_scores_gemma":[0.9974957,0.00001727823,0.0019042335,0.000087402026,0.00033005333,0.000024384619,0.000107369946,0.000012491588,0.000021071011],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909866,0.000043771568,0.0002570226,0.00028488986,0.000041916235,0.00027376774],"domain_scores_gemma":[0.999656,0.000012540309,0.000062651445,0.00017862786,0.000048676924,0.000041493837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001505001,0.00012278123,0.0002008542,0.000047595608,0.000019328647,0.0000046303626,0.000114656395,0.00026337904,0.0000058622672],"category_scores_gemma":[0.00001690867,0.00011244874,0.00006926265,0.0001116211,0.0001120683,0.0000026271368,0.00008773543,0.00011363364,0.000008929329],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009840721,0.00007853663,0.0031154545,0.000010524297,0.000017942435,7.521657e-7,0.00004303367,0.00008365834,0.9951329,0.00013383183,0.000006196141,0.0012787419],"study_design_scores_gemma":[0.00031032437,0.0003718845,0.0048196306,0.000009384585,0.000012019638,3.2499966e-7,0.000017217828,0.0005589482,0.9918064,0.0008215585,0.0011300783,0.00014226673],"about_ca_topic_score_codex":0.00004097787,"about_ca_topic_score_gemma":0.000077770404,"teacher_disagreement_score":0.0065570893,"about_ca_system_score_codex":0.000008466718,"about_ca_system_score_gemma":0.000022259159,"threshold_uncertainty_score":0.45855266},"labels":[],"label_agreement":null},{"id":"W2148938582","doi":"10.1128/jb.186.10.3254-3258.2004","title":"Genome-Wide Analysis of Lipoprotein Expression in <i>Escherichia coli</i> MG1655","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Escherichia coli; Gene; Gene expression; Anaerobic exercise; Genome; Gene expression profiling; DNA microarray; Genetics; Microarray analysis techniques; Transcriptome; Computational biology","score_opus":0.006731910941623325,"score_gpt":0.22271650205813875,"score_spread":0.21598459111651544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148938582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977696,0.00056857755,0.0009919363,0.00029817584,0.00019751799,0.00009271266,0.000013259678,0.00000249381,0.00006573018],"genre_scores_gemma":[0.9956695,0.00063296244,0.0033263538,0.00017451915,0.00013144975,0.0000033080105,0.00003108616,0.0000129885275,0.000017827033],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986707,0.00009608917,0.00071141386,0.00020593335,0.00008758676,0.00022830782],"domain_scores_gemma":[0.99892014,0.000013389587,0.00057986705,0.00027776367,0.00014011226,0.00006873275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031787163,0.000150684,0.00055578665,0.00036755382,0.000020275253,0.000007725062,0.00032525763,0.0004210715,0.00003457044],"category_scores_gemma":[0.00011027798,0.00012678171,0.00023597937,0.0003975255,0.00013627812,0.0000049413193,0.00012419088,0.00020486387,0.0000014014046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034094293,0.00012112289,0.0063034305,0.000008749282,0.0002647496,0.000014762391,0.000038497015,0.0007695301,0.99177814,0.0000133421445,0.000008849878,0.00033789157],"study_design_scores_gemma":[0.0009432001,0.0010546469,0.25118405,0.00001966177,0.00011786386,0.000021726637,0.000032965665,0.000002837517,0.74076843,0.00012213187,0.0056057787,0.00012669922],"about_ca_topic_score_codex":0.000029063522,"about_ca_topic_score_gemma":0.00011073934,"teacher_disagreement_score":0.25100967,"about_ca_system_score_codex":0.000028650033,"about_ca_system_score_gemma":0.00013887466,"threshold_uncertainty_score":0.51700085},"labels":[],"label_agreement":null},{"id":"W2149326970","doi":"10.1007/s00232-014-9678-4","title":"Amphipol-Trapped ExbB–ExbD Membrane Protein Complex from Escherichia coli: A Biochemical and Structural Case Study","year":2014,"lang":"en","type":"preprint","venue":"The Journal of Membrane Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University","funders":"Canadian Institutes of Health Research; Agence Nationale de la Recherche","keywords":"Analytical Ultracentrifugation; Membrane; Size-exclusion chromatography; Bacterial outer membrane; Ultracentrifuge; Chemistry; Membrane protein; Transmembrane protein; Chromatography; Crystallography; Escherichia coli; Biochemistry","score_opus":0.019492696764534894,"score_gpt":0.2697776007613065,"score_spread":0.2502849039967716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149326970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953448,0.0018860336,0.00014723188,0.0010373793,0.0005524632,0.00089709915,0.00010459116,0.000015995744,0.000014393956],"genre_scores_gemma":[0.99637187,0.0005569426,0.0012142459,0.00026540997,0.0013619765,0.000017773787,0.00013383932,0.000052761126,0.000025214731],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968195,0.00096585875,0.0009973826,0.0005879423,0.00017486264,0.00045447875],"domain_scores_gemma":[0.99751884,0.0000830197,0.0010683525,0.00087965134,0.00025948367,0.0001906347],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0008949544,0.00057666923,0.0010072065,0.00012221902,0.00015994227,0.0000560927,0.0009934499,0.0013052814,0.0000756559],"category_scores_gemma":[0.0001427412,0.00038456015,0.00021960838,0.000082258935,0.00070007326,0.0000031484046,0.00090046506,0.0011099642,0.0000026647306],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001006472,0.00011583354,0.00021654944,0.00005448047,0.0006336581,0.00014699395,0.00017654955,0.00002548953,0.9968263,0.000009979947,0.00014790328,0.00063979666],"study_design_scores_gemma":[0.0039745243,0.0038023132,0.0015106992,0.00007565691,0.0006819472,0.0050939405,0.0008919945,0.00024623488,0.9777935,0.0007502855,0.004335749,0.0008431174],"about_ca_topic_score_codex":0.0006506527,"about_ca_topic_score_gemma":0.00018490652,"teacher_disagreement_score":0.019032756,"about_ca_system_score_codex":0.000023609313,"about_ca_system_score_gemma":0.00019624346,"threshold_uncertainty_score":0.99999124},"labels":[],"label_agreement":null},{"id":"W2149543447","doi":"10.1111/j.1365-2958.2007.05957.x","title":"The solution structure of the periplasmic domain of the TonB system ExbD protein reveals an unexpected structural homology with siderophore‐binding proteins","year":2007,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Bacterial outer membrane; Biology; Biophysics; Cytoplasm; Transmembrane domain; Protein structure; Crystallography; Siderophore; Antiparallel (mathematics); Biochemistry; Membrane; Escherichia coli; Chemistry; Physics","score_opus":0.0026060649128919295,"score_gpt":0.18840927368908883,"score_spread":0.1858032087761969,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149543447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970634,0.0003529077,0.0005194542,0.00039185103,0.00032590583,0.0011854763,0.00011856773,0.0000133674985,0.00002904335],"genre_scores_gemma":[0.9983916,0.000003707039,0.0012914399,0.000053952983,0.000064605985,0.000017275712,0.000070864524,0.0000322866,0.00007425704],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99797314,0.00045258185,0.0005020583,0.00045710165,0.000113401096,0.000501693],"domain_scores_gemma":[0.9981304,0.00001399681,0.0005337393,0.0010329254,0.00024749103,0.000041483712],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033327367,0.0002804603,0.00031325425,0.000049417293,0.00031556012,0.000015420826,0.0009026701,0.00064273097,0.0000039864094],"category_scores_gemma":[0.00007085636,0.00013987448,0.00014843787,0.00026769147,0.0011168026,0.0000029424857,0.000396248,0.0003005931,4.1218414e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002739812,0.000016861924,0.000543561,0.000034514476,0.000102581704,0.0000035770627,0.00006870988,0.000022250986,0.9976333,0.0011106819,0.000014848549,0.00017516989],"study_design_scores_gemma":[0.0005476424,0.0006596629,0.002207514,0.000042398646,0.000033663593,0.0004168014,0.00028088634,0.0000040887558,0.9945539,0.0001712775,0.00090060796,0.00018155166],"about_ca_topic_score_codex":0.00006684694,"about_ca_topic_score_gemma":0.00066446257,"teacher_disagreement_score":0.0030793564,"about_ca_system_score_codex":0.00004883409,"about_ca_system_score_gemma":0.00013368626,"threshold_uncertainty_score":0.57039154},"labels":[],"label_agreement":null},{"id":"W2149700851","doi":"10.1002/anie.200604317","title":"Raftlike Polyvalent Inhibitors of the Anthrax Toxin: Modulating Inhibitory Potency by Formation of Lipid Microdomains","year":2007,"lang":"en","type":"article","venue":"Angewandte Chemie International Edition","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Lipid microdomain; Chemistry; Anthrax toxin; Inhibitory postsynaptic potential; Potency; Peptide; Toxin; Biochemistry; Membrane; In vitro; Biology; Neuroscience","score_opus":0.005832929940462424,"score_gpt":0.2244123378209529,"score_spread":0.2185794078804905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149700851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927823,0.00018408649,0.0037983432,0.0005118434,0.00145748,0.0001255503,0.00015021276,0.000008097652,0.0009821018],"genre_scores_gemma":[0.9978763,0.0001443393,0.0002873982,0.00009430707,0.0010682225,0.000004306671,0.0003813783,0.000011228727,0.00013255498],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909174,0.000013604303,0.00038355892,0.00016990508,0.00020571,0.00013549424],"domain_scores_gemma":[0.99927366,0.000010494635,0.00032245918,0.000176414,0.00018967927,0.000027268812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002071724,0.0001074974,0.00010193754,0.00005464028,0.00004359194,0.0000071816858,0.00021071252,0.00021907382,0.000019524226],"category_scores_gemma":[0.00007536217,0.00009083983,0.00010465939,0.000084570755,0.00013848847,0.000011897941,0.00012901342,0.00008495582,7.641198e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005366606,0.00007383566,0.00042693006,0.00001868738,0.000022059545,1.7289011e-7,0.00004171352,0.0000052526157,0.9923431,0.000032531603,0.005304874,0.001677122],"study_design_scores_gemma":[0.00038651915,0.00009130115,0.0010817945,0.000047278863,0.000009178869,0.000007886021,0.00008400704,0.000011876712,0.9852847,0.00006944015,0.012833884,0.00009212037],"about_ca_topic_score_codex":0.000023498373,"about_ca_topic_score_gemma":0.000018501452,"teacher_disagreement_score":0.0075290105,"about_ca_system_score_codex":0.00003504161,"about_ca_system_score_gemma":0.000026481182,"threshold_uncertainty_score":0.37043408},"labels":[],"label_agreement":null},{"id":"W2149770991","doi":"10.1371/journal.pone.0006864","title":"Whole Genome Amplification and De novo Assembly of Single Bacterial Cells","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":265,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of California, San Diego; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Broad Institute; U.S. Department of Energy; Gordon and Betty Moore Foundation; National Institutes of Health; U.S. Department of Health and Human Services; National Science Foundation","keywords":"Genome; Sequence assembly; Multiple displacement amplification; Contig; Biology; Computational biology; DNA sequencing; Deep sequencing; Whole genome sequencing; Genomics; Genetics; Reference genome; Bacterial genome size; DNA; Gene; Polymerase chain reaction; Transcriptome","score_opus":0.01984193161847208,"score_gpt":0.20652132181402943,"score_spread":0.18667939019555735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149770991","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99906164,0.00017327032,0.00016133559,0.0003197129,0.00002352934,0.00010063482,0.000030064726,0.000013645183,0.00011617019],"genre_scores_gemma":[0.9952683,0.0001670864,0.0041283686,0.00008648978,0.00016972063,0.000002671254,0.00008426564,0.000010673699,0.00008240911],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994814,0.000017146443,0.00013212932,0.00017845558,0.000052631443,0.00013827298],"domain_scores_gemma":[0.9996448,0.0000026390803,0.00006528615,0.00019821247,0.00004978104,0.000039274833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000062082865,0.0000757221,0.00011694401,0.000026299856,0.00001822317,0.000014583193,0.00009412187,0.00018785607,0.000005774337],"category_scores_gemma":[0.000018973335,0.000078215206,0.00002035449,0.000039365048,0.000045866647,0.0000015714893,0.00003806651,0.00003683873,0.0000024537694],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050065853,0.00042562402,0.00005484124,0.000012403723,0.00003180383,3.6585396e-7,0.000012151261,5.1365595e-7,0.99856377,0.000025889643,0.000012691232,0.000809903],"study_design_scores_gemma":[0.00024754216,0.0007089687,0.005004607,0.000008946586,0.00003132635,0.0000024084893,0.000004794916,0.000004575218,0.99120265,0.000064968764,0.002630003,0.00008919093],"about_ca_topic_score_codex":0.0000024267397,"about_ca_topic_score_gemma":0.0000036798542,"teacher_disagreement_score":0.007361079,"about_ca_system_score_codex":0.0000064593423,"about_ca_system_score_gemma":0.00002073172,"threshold_uncertainty_score":0.31895235},"labels":[],"label_agreement":null},{"id":"W2149942632","doi":"10.1074/mcp.m110.002493","title":"A Proteomic Analysis Reveals Differential Regulation of the σS-Dependent yciGFE(katN) Locus by YncC and H-NS in Salmonella and Escherichia coli K-12","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Centre National de la Recherche Scientifique; Keio University","keywords":"rpoS; Biology; Escherichia coli; Salmonella enterica; Gene; Operon; Regulon; Molecular biology; Salmonella; Promoter; Transcription (linguistics); Gene expression; Genetics; Bacteria","score_opus":0.0027191679124589432,"score_gpt":0.18323356483210954,"score_spread":0.1805143969196506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149942632","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99497,0.00029274714,0.0032602868,0.00021972289,0.00010667324,0.0010675383,0.000044475335,0.0000087098015,0.000029817516],"genre_scores_gemma":[0.9975314,0.000111507805,0.0019320677,0.000046933957,0.00004635493,0.00006326177,0.00008362168,0.000034047283,0.00015079694],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99841136,0.00014380505,0.00041433622,0.00056294043,0.00016971336,0.0002978374],"domain_scores_gemma":[0.99895567,0.0000048654842,0.0002545752,0.00064283086,0.00006065363,0.000081405386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026680736,0.00026350003,0.00035020124,0.00010568761,0.00007548751,0.000048553287,0.00028572674,0.0005838067,0.0000123529535],"category_scores_gemma":[0.00005791502,0.00022436595,0.0001286065,0.00024205747,0.00028518384,0.0000044444873,0.00037893982,0.00032290348,5.8582697e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000088529305,0.00007906629,0.0053871647,0.000031199645,0.00014183212,0.0000024144183,0.000029954155,0.000026951946,0.99375445,0.00010260225,0.000011169533,0.0003446706],"study_design_scores_gemma":[0.00071299804,0.00014154815,0.013784964,0.000010514598,0.00016833433,0.000007158581,0.0000097546035,0.00051228434,0.9838677,0.00034679123,0.00018790188,0.0002500254],"about_ca_topic_score_codex":0.000109942746,"about_ca_topic_score_gemma":0.00015509955,"teacher_disagreement_score":0.009886719,"about_ca_system_score_codex":0.000013149652,"about_ca_system_score_gemma":0.00005078075,"threshold_uncertainty_score":0.9149378},"labels":[],"label_agreement":null},{"id":"W2150018254","doi":"10.1093/nar/gkt249","title":"Mechanism of DNA organization by Mycobacterium tuberculosis protein Lsr2","year":2013,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Mechanobiology Institute, Singapore","keywords":"Nucleoid; Biology; Nucleoprotein; DNA; DNA-binding protein; Mycobacterium tuberculosis; Gene; Genetics; Circular bacterial chromosome; Cell biology; Molecular biology; Escherichia coli; Microbiology; Transcription factor; DNA replication; Tuberculosis","score_opus":0.011681530047622348,"score_gpt":0.2566109955144575,"score_spread":0.24492946546683514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150018254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974015,0.00009475888,0.0002718111,0.00093972794,0.00007064482,0.00054517627,0.000031313983,0.000019932297,0.0006251763],"genre_scores_gemma":[0.9975971,0.00020075943,0.0007523341,0.0000474628,0.000118349686,0.000054622815,0.00015662993,0.00004238152,0.001030379],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99858254,0.00012624852,0.00023488323,0.0003721426,0.0002810379,0.00040312178],"domain_scores_gemma":[0.9987349,0.000006888421,0.00005765043,0.0004916536,0.00061328494,0.000095635216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002975721,0.00013480341,0.00015414691,0.00009914997,0.00009922022,0.000050017577,0.00039942085,0.00046848814,0.0006059669],"category_scores_gemma":[0.00018639996,0.0001233078,0.000041639505,0.00038710065,0.00020055521,0.0000063316515,0.00040272853,0.00019490448,0.00014292788],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015161291,0.000076641125,0.00025043657,0.00002840171,0.000028902958,3.6566263e-7,0.000017956736,1.0782701e-7,0.99184996,0.0005834805,0.0049253046,0.0022232553],"study_design_scores_gemma":[0.00024069492,0.00052678905,0.0010574241,0.000011486745,0.0000039913375,0.0000038723606,0.00005926071,0.000017753046,0.98579055,0.0005166458,0.011638645,0.00013286098],"about_ca_topic_score_codex":0.00010317158,"about_ca_topic_score_gemma":0.000004943019,"teacher_disagreement_score":0.006713341,"about_ca_system_score_codex":0.000021636908,"about_ca_system_score_gemma":0.000069133785,"threshold_uncertainty_score":0.66349125},"labels":[],"label_agreement":null},{"id":"W2150553635","doi":"10.1016/j.jmb.2005.01.012","title":"A Novel CRP-dependent Regulon Controls Expression of Competence Genes in Haemophilus influenzae","year":2005,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":118,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Regulon; Biology; Gene; Genetics; cAMP receptor protein; Promoter; Transcription factor; Cell biology; Gene expression","score_opus":0.009062143220995949,"score_gpt":0.25794506674083995,"score_spread":0.248882923519844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150553635","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98660856,0.0049065226,0.0074585318,0.0006129722,0.00020401168,0.0001303603,0.00001797879,0.0000031573327,0.00005788487],"genre_scores_gemma":[0.98764753,0.0006406862,0.011127841,0.0003039755,0.00023521867,0.000003758156,0.000011112016,0.000016378006,0.000013509472],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998526,0.00011270523,0.00072580256,0.00024770698,0.00012045531,0.00026735422],"domain_scores_gemma":[0.9988123,0.000016826352,0.0005687282,0.00031271952,0.00021589687,0.000073537216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003631628,0.00018069119,0.00042229294,0.00018530044,0.000020994145,0.000007985895,0.0004242624,0.00047292456,0.000011495286],"category_scores_gemma":[0.00013767958,0.00014960514,0.00015891799,0.000099578814,0.00015321173,0.0000048173597,0.00018684391,0.0002048934,0.0000014758009],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003641423,0.00017182696,0.0010996768,0.0000095965925,0.00004300762,0.000015004188,0.000013420068,0.0004937705,0.9916388,0.00018585594,0.000022465474,0.0059424774],"study_design_scores_gemma":[0.0019813555,0.0010762936,0.0014906153,0.00004270579,0.000018370165,0.00027055832,0.000019356381,0.00002499242,0.9856753,0.00019257088,0.009054854,0.00015306498],"about_ca_topic_score_codex":0.000013825921,"about_ca_topic_score_gemma":0.00004493776,"teacher_disagreement_score":0.009032388,"about_ca_system_score_codex":0.00002258377,"about_ca_system_score_gemma":0.00011805707,"threshold_uncertainty_score":0.6100721},"labels":[],"label_agreement":null},{"id":"W2150561721","doi":"10.1038/nrmicro2930","title":"RNase E: at the interface of bacterial RNA processing and decay","year":2012,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":341,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Canadian Institutes of Health Research","keywords":"Endoribonuclease; Degradosome; RNase P; Biology; Exosome complex; RNA; RNase MRP; RNase PH; Cell biology; Non-coding RNA; Biochemistry; Gene","score_opus":0.017504207233665924,"score_gpt":0.32211010638050636,"score_spread":0.30460589914684044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150561721","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0011892167,0.9966458,0.0000108789445,0.000051015908,0.0008262363,0.00096786534,0.00021204147,0.00000760971,0.000089311776],"genre_scores_gemma":[0.0004550842,0.99717474,0.00024348024,0.00008416935,0.0006793613,0.000055556276,0.0008791777,0.000052490333,0.0003759527],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976239,0.00046866757,0.0008341226,0.0006212001,0.000033749497,0.00041831247],"domain_scores_gemma":[0.9981955,0.000031014493,0.0009302646,0.00070495444,0.000070358765,0.0000678576],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00058437,0.0005503967,0.0016864527,0.00007095287,0.00009272783,0.000017560349,0.0005923199,0.002906317,0.000083671155],"category_scores_gemma":[0.00006334757,0.0003085772,0.00040485564,0.00015010723,0.00048935297,0.0000024531582,0.000902742,0.00078770367,0.000027763681],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017657605,0.000018593115,6.135894e-7,0.0033278053,0.00007077388,4.0216284e-7,0.000005532244,4.582267e-9,0.33785784,0.000008543319,0.001392912,0.65729934],"study_design_scores_gemma":[0.00013370332,0.00012682023,4.7908566e-7,0.0013856426,0.00052438775,0.00047394607,0.0000016039681,1.6991695e-8,0.03497094,0.0000014488704,0.96207416,0.0003068723],"about_ca_topic_score_codex":0.0000016553479,"about_ca_topic_score_gemma":0.00003248644,"teacher_disagreement_score":0.9606812,"about_ca_system_score_codex":0.000030605042,"about_ca_system_score_gemma":0.00012396775,"threshold_uncertainty_score":0.99993664},"labels":[],"label_agreement":null},{"id":"W2150999177","doi":"10.1128/jb.00509-12","title":"Transcription of the <i>oprF</i> Gene of Pseudomonas aeruginosa Is Dependent Mainly on the SigX Sigma Factor and Is Sucrose Induced","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Promoter; Biology; Sigma factor; Transcription (linguistics); Gene; Genetics; Molecular biology; Gene expression","score_opus":0.016393687189592922,"score_gpt":0.22969596453126556,"score_spread":0.21330227734167265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150999177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99689215,0.00049036834,0.00004650853,0.0017624744,0.00056423765,0.0001379173,0.00007511002,0.000001372139,0.000029859228],"genre_scores_gemma":[0.99808204,0.0006757165,0.00013265085,0.00081947737,0.00024133711,0.0000020325972,0.0000033024562,0.0000127866315,0.000030626466],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988473,0.00016440514,0.0004913169,0.00014353407,0.00012212689,0.00023128458],"domain_scores_gemma":[0.9988906,0.000031633885,0.0005607846,0.0003246454,0.00012959534,0.00006273935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003181705,0.00016051036,0.00030603114,0.000052635885,0.000051936884,0.000008212236,0.00032225123,0.00039264956,0.00005365888],"category_scores_gemma":[0.000055949837,0.00009046776,0.00017377599,0.00006522415,0.00022612119,0.000006336911,0.000104756444,0.00023515336,8.188223e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025606615,0.000091904614,0.004862908,0.000012159087,0.00010820269,6.396786e-7,0.00022970783,5.145139e-7,0.99258476,0.00006593387,0.00012182873,0.0016653552],"study_design_scores_gemma":[0.0004843037,0.00096080056,0.069514655,0.000015643493,0.000040873674,0.00014428333,0.00006321976,9.667247e-7,0.9250715,0.00006008625,0.0035557572,0.00008794379],"about_ca_topic_score_codex":0.000012076677,"about_ca_topic_score_gemma":0.000007019606,"teacher_disagreement_score":0.06751332,"about_ca_system_score_codex":0.000010982218,"about_ca_system_score_gemma":0.000064467735,"threshold_uncertainty_score":0.3689168},"labels":[],"label_agreement":null},{"id":"W2151405008","doi":"10.1128/jb.184.20.5781-5788.2002","title":"The Positive Regulator, TraJ, of the <i>Escherichia coli</i> F Plasmid Is Unstable in a <i>cpxA</i> * Background","year":2002,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Operon; Periplasmic space; Escherichia coli; Plasmid; Response regulator; Cell envelope; Downregulation and upregulation; Regulator; Molecular biology; Cell biology; Genetics; Mutant; Gene","score_opus":0.009016276610395954,"score_gpt":0.209361697888759,"score_spread":0.20034542127836305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151405008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99437785,0.0014399493,0.000017587014,0.002977154,0.0006447915,0.00012849692,0.00002726359,0.000001700828,0.00038521897],"genre_scores_gemma":[0.99675274,0.0016018793,0.00024363627,0.00086911215,0.00018810255,0.0000031268653,0.0000028085324,0.00001599273,0.0003225822],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985991,0.00019702056,0.00061506144,0.00018191626,0.000109347435,0.00029755308],"domain_scores_gemma":[0.99883586,0.000045597302,0.00055170944,0.00036419174,0.0001519333,0.00005072714],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003356147,0.00016307495,0.00032347924,0.000045794608,0.000090693844,0.000021131491,0.0005606746,0.00036429038,0.000035904748],"category_scores_gemma":[0.000055628814,0.00009619279,0.0001897369,0.00018023107,0.0004075251,0.0000060076027,0.00015884009,0.00030255376,0.0000026940077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027996214,0.0000795512,0.0008701306,0.0000055680307,0.00007865013,0.0000037633056,0.00006292934,0.0000068317436,0.99468243,0.00009457254,0.0027114837,0.0011241235],"study_design_scores_gemma":[0.0010595189,0.0009348466,0.018296128,0.000031428706,0.000031804622,0.00020659908,0.00011504515,0.000029237373,0.8368144,0.00018134741,0.1421483,0.00015134265],"about_ca_topic_score_codex":0.00001518313,"about_ca_topic_score_gemma":0.000049446,"teacher_disagreement_score":0.15786804,"about_ca_system_score_codex":0.000024686684,"about_ca_system_score_gemma":0.000082382576,"threshold_uncertainty_score":0.3922628},"labels":[],"label_agreement":null},{"id":"W2151436324","doi":"10.1139/cjm-2014-0595","title":"Synthesis of bacterial polysaccharides via the Wzx/Wzy-dependent pathway","year":2014,"lang":"en","type":"review","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":272,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Biology; Biofilm; Bacteria; Glycan; Periplasmic space; Flagellum; Pseudomonas aeruginosa; Bacterial outer membrane; Bacterial cell structure; Microbiology; Escherichia coli; Biochemistry; Genetics; Gene","score_opus":0.01123218716296616,"score_gpt":0.22226898092636546,"score_spread":0.2110367937633993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151436324","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005999574,0.99076116,0.000060992254,0.00013954133,0.0021558306,0.00025524676,0.00057036144,0.0000021811973,0.000055086697],"genre_scores_gemma":[0.021538215,0.9765535,0.0001427622,0.00009954909,0.001338611,0.000010318601,0.00014083344,0.00006143825,0.00011477162],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975693,0.0005330473,0.0010705462,0.0003152447,0.00004427486,0.00046757123],"domain_scores_gemma":[0.9976233,0.00009258867,0.001285668,0.0005731392,0.00019979099,0.00022550179],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007558373,0.00039052218,0.001507609,0.00028020784,0.000105935585,0.000027193351,0.0012231116,0.001304288,0.0001590784],"category_scores_gemma":[0.0003102978,0.00025322425,0.0006604864,0.00010816614,0.0005031816,0.0000019379636,0.000112980655,0.0005114525,0.000015733222],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029280833,0.000017845181,0.000004767833,0.00060877047,0.0005979776,0.000024880224,0.000015042741,5.1196395e-7,0.49382237,0.000039449067,0.00210363,0.5027355],"study_design_scores_gemma":[0.00013001173,0.00037299108,0.0000016902017,0.0005310642,0.00032743783,0.0018089106,0.0000101254545,4.2242483e-8,0.06999049,0.000016067006,0.92657214,0.00023900208],"about_ca_topic_score_codex":0.0004038105,"about_ca_topic_score_gemma":0.0053119324,"teacher_disagreement_score":0.9244685,"about_ca_system_score_codex":0.00005660115,"about_ca_system_score_gemma":0.0022387977,"threshold_uncertainty_score":0.99999225},"labels":[],"label_agreement":null},{"id":"W2151498540","doi":"10.1128/jb.182.10.2709-2715.2000","title":"Conjugative Junctions in RP4-Mediated Mating of <i>Escherichia coli</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Deutsche Forschungsgemeinschaft","keywords":"Pilin; Plasmid; Pilus; Biology; Escherichia coli; Bacterial outer membrane; Membrane; Bacteria; Biophysics; Cell biology; Microbiology; DNA; Gene; Genetics","score_opus":0.0074701522865784345,"score_gpt":0.22552271943305766,"score_spread":0.21805256714647922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151498540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841124,0.00022877852,0.000048162463,0.00033745953,0.0003047821,0.0000763432,0.000019223178,0.0000028343459,0.00057118025],"genre_scores_gemma":[0.99749696,0.0006580012,0.0012773942,0.00023669693,0.0001668745,0.00000263342,0.00002228548,0.00001176619,0.00012739882],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988955,0.00012145645,0.0006030639,0.00013690164,0.00005581657,0.00018725324],"domain_scores_gemma":[0.99929076,0.00002304514,0.000363328,0.00014807747,0.00012492576,0.000049877046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023736947,0.000117637996,0.00033347227,0.00009674483,0.00002213624,0.000005651117,0.00018934543,0.00031526765,0.00022248337],"category_scores_gemma":[0.00010200955,0.00010199029,0.00009307949,0.0001443019,0.00017755253,0.0000044662306,0.000040101335,0.00020453044,0.000006823398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003133735,0.00007923711,0.0025609084,0.0000075158378,0.000053579286,0.000006578642,0.000042884763,0.000030436737,0.9937924,0.000021434174,0.00020415487,0.0028875023],"study_design_scores_gemma":[0.0032614765,0.004252133,0.1278705,0.000086923545,0.000053745058,0.00030069542,0.00022727514,0.000054996646,0.7467594,0.0002996161,0.11646812,0.0003651301],"about_ca_topic_score_codex":0.00001762397,"about_ca_topic_score_gemma":0.00003064806,"teacher_disagreement_score":0.247033,"about_ca_system_score_codex":0.00001297124,"about_ca_system_score_gemma":0.000106822554,"threshold_uncertainty_score":0.41590434},"labels":[],"label_agreement":null},{"id":"W2152506366","doi":"10.1074/jbc.m710135200","title":"The C-terminal Domain of Escherichia coli YfhD Functions as a Lytic Transglycosylase","year":2008,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Lytic cycle; Escherichia coli; Terminal (telecommunication); Escherichia coli Proteins; Domain (mathematical analysis); Chemistry; Microbiology; Biology; Biochemistry; Computer science; Genetics; Mathematics; Gene","score_opus":0.014226241174477862,"score_gpt":0.2312672410798058,"score_spread":0.21704099990532796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152506366","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976441,0.0010016586,0.00017415962,0.00039258142,0.00014124229,0.000058517566,0.000016046792,0.0000045590505,0.00056711066],"genre_scores_gemma":[0.9971687,0.0014928562,0.00047857105,0.00007844246,0.00036877237,0.0000034909808,0.000011605745,0.000008329303,0.00038922907],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989477,0.000047010817,0.00048352254,0.00016889008,0.00012729119,0.00022558447],"domain_scores_gemma":[0.99912363,0.00003588641,0.00033790086,0.00023294186,0.00016278304,0.00010686359],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002379134,0.00015070736,0.00024356728,0.00001463301,0.000138794,0.000009757413,0.00037239675,0.00041490982,0.00006179113],"category_scores_gemma":[0.00018061376,0.000089931535,0.00024476807,0.00009974281,0.0005483396,0.000002114527,0.00007431872,0.00025861917,0.000003461254],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004974222,0.00011652239,0.00037943447,0.000009696161,0.00006843271,0.000049263785,0.000010393087,0.0000031393533,0.9977358,0.000011409346,0.00058093003,0.0005375637],"study_design_scores_gemma":[0.00061375304,0.0010628664,0.0014050397,0.000011853317,0.000021762142,0.0014625855,0.00010862787,0.0000021025892,0.94375724,0.00019766873,0.051230766,0.00012573306],"about_ca_topic_score_codex":0.0000020392056,"about_ca_topic_score_gemma":0.000001048655,"teacher_disagreement_score":0.05397855,"about_ca_system_score_codex":0.000013108051,"about_ca_system_score_gemma":0.000161443,"threshold_uncertainty_score":0.36673015},"labels":[],"label_agreement":null},{"id":"W2152607628","doi":"10.1093/nar/gkh108","title":"The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli","year":2003,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":214,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; In silico; Relational database; Escherichia coli Proteins; Database; Escherichia coli; Computational biology; Genetics; Computer science; Gene","score_opus":0.04924284892420682,"score_gpt":0.30886486560653714,"score_spread":0.2596220166823303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152607628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997373,0.0005920411,0.00035829947,0.00037182253,0.00004918324,0.00038306142,0.00011379527,0.000009152326,0.00074963435],"genre_scores_gemma":[0.9922404,0.0008413574,0.0064465455,0.00006328834,0.000025949368,0.00002857986,0.000092952134,0.000020104266,0.00024080493],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982348,0.0003267228,0.00030460418,0.0004454408,0.000258374,0.00043002967],"domain_scores_gemma":[0.9989277,0.00007944049,0.00004345307,0.00055829383,0.00027742024,0.000113694034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010209022,0.00013782691,0.00015901339,0.00011064346,0.00020454025,0.00003481659,0.00029233441,0.0001822187,0.000016106067],"category_scores_gemma":[0.00043251266,0.00011508135,0.000029709865,0.00034208948,0.00024334058,0.00000684152,0.00051573594,0.00034767442,0.0000120168015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014296877,0.00007027782,0.001154011,0.000029953368,0.000023133112,0.000002925846,0.000084561645,0.00022596914,0.9955837,0.0016095956,0.0005399483,0.00053292874],"study_design_scores_gemma":[0.0035577905,0.0016877705,0.006131537,0.00013408894,0.000026152149,0.000028288767,0.0023949232,0.03184003,0.551122,0.00086222216,0.40137324,0.00084196165],"about_ca_topic_score_codex":0.00015773812,"about_ca_topic_score_gemma":0.00015197974,"teacher_disagreement_score":0.44446173,"about_ca_system_score_codex":0.000022352488,"about_ca_system_score_gemma":0.0001317351,"threshold_uncertainty_score":0.4692881},"labels":[],"label_agreement":null},{"id":"W2152864932","doi":"10.1128/mmbr.00024-08","title":"Pivotal Roles of the Outer Membrane Polysaccharide Export and Polysaccharide Copolymerase Protein Families in Export of Extracellular Polysaccharides in Gram-Negative Bacteria","year":2009,"lang":"en","type":"review","venue":"Microbiology and Molecular Biology Reviews","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":299,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Bacterial outer membrane; Biology; Polysaccharide; Biogenesis; Bacteria; Biochemistry; ATP-binding cassette transporter; Function (biology); Membrane protein; Cell biology; Membrane; Gene; Transporter; Genetics; Escherichia coli","score_opus":0.013590699828745237,"score_gpt":0.2675188410155683,"score_spread":0.25392814118682305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152864932","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.36468354,0.6335142,0.000019999252,0.00005220374,0.000107859116,0.0014430988,0.00016715135,0.000005169648,0.0000067356164],"genre_scores_gemma":[0.057243336,0.94144845,0.0006633451,0.000116920724,0.00005016178,0.00015281342,0.00021445876,0.000048995993,0.000061493025],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99505836,0.001053775,0.0020391473,0.0011784986,0.000051958225,0.0006182486],"domain_scores_gemma":[0.9976166,0.000041569183,0.0012988058,0.00089862227,0.000059603728,0.00008480194],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00085820886,0.0008702781,0.003036668,0.00040985967,0.000057083707,0.000012683337,0.0006982611,0.0019106963,0.000015838194],"category_scores_gemma":[0.0002124617,0.0006078444,0.00052214257,0.00038274328,0.001274411,0.0000081572625,0.0006338866,0.00061808765,0.0000016022304],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006654404,0.000113906826,0.00026922845,0.0012919983,0.00012439504,0.000017159182,0.000045121484,4.5525205e-8,0.9001625,0.00014707004,0.00000834516,0.09775368],"study_design_scores_gemma":[0.0009137571,0.00070808874,0.00013086558,0.0037231196,0.00033458156,0.0004292403,0.000046620553,3.9874013e-7,0.84240353,0.00014174392,0.15033044,0.0008376386],"about_ca_topic_score_codex":0.00010481707,"about_ca_topic_score_gemma":0.00029540612,"teacher_disagreement_score":0.30793422,"about_ca_system_score_codex":0.000023534745,"about_ca_system_score_gemma":0.00024069415,"threshold_uncertainty_score":0.9996373},"labels":[],"label_agreement":null},{"id":"W2153570957","doi":"10.1128/jb.00312-12","title":"Error-Prone PCR Mutagenesis Reveals Functional Domains of a Bacterial Transcriptional Activator, TraJ","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Biology; Mutant; Operon; Plasmid; Mutagenesis; Molecular biology; Biochemistry; Gene","score_opus":0.019872370052258604,"score_gpt":0.2416660343310176,"score_spread":0.221793664278759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153570957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955311,0.0007703714,0.00081051345,0.00026593497,0.0023209916,0.00011427159,0.00009198838,0.0000054192215,0.00008940322],"genre_scores_gemma":[0.9951769,0.00029004877,0.0017208437,0.00012963438,0.002429369,0.0000060524285,0.00011728707,0.000026873924,0.00010297601],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998225,0.00020206993,0.0007787381,0.00020298208,0.0001625443,0.00042868615],"domain_scores_gemma":[0.99870294,0.000028838154,0.0006428004,0.0002495971,0.0001989237,0.00017687568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058358326,0.00022589242,0.0004986642,0.0001537088,0.000057447814,0.000010004281,0.0002689395,0.00062772416,0.00043144173],"category_scores_gemma":[0.00009719892,0.00019202866,0.00027327487,0.00009884944,0.0002591988,0.00001904268,0.000073670046,0.00023251734,0.0000060692855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013430718,0.0002330924,0.003758873,0.000020940237,0.0002514918,0.000002888662,0.000051903564,0.00000487771,0.9919147,0.000265825,0.00055760256,0.0015947225],"study_design_scores_gemma":[0.0018163868,0.001682602,0.27828524,0.000020618698,0.00011036584,0.0008181268,0.000074803815,0.0000010328262,0.63073695,0.000109142115,0.08607594,0.00026880988],"about_ca_topic_score_codex":0.0000043132013,"about_ca_topic_score_gemma":0.0000042836805,"teacher_disagreement_score":0.36117777,"about_ca_system_score_codex":0.000033830114,"about_ca_system_score_gemma":0.0001898512,"threshold_uncertainty_score":0.78307015},"labels":[],"label_agreement":null},{"id":"W2153781183","doi":"10.1128/mbio.00678-13","title":"Proton-Dependent Gating and Proton Uptake by Wzx Support O-Antigen-Subunit Antiport Across the Bacterial Inner Membrane","year":2013,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; University of Guelph","funders":"Canadian Institutes of Health Research; Medical Research Council; Cystic Fibrosis Canada","keywords":"Periplasmic space; Antiporter; Biophysics; Chemistry; Inner membrane; Biochemistry; Transport protein; Electrochemical gradient; Cytoplasm; Membrane; Biology; Escherichia coli","score_opus":0.00697398210156806,"score_gpt":0.23141818451891485,"score_spread":0.2244442024173468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153781183","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961521,0.000113218724,0.000021913898,0.000985906,0.0002760056,0.0020211947,0.00007988415,0.000028836985,0.00032092104],"genre_scores_gemma":[0.9969777,0.00034957958,0.00019582902,0.00030908122,0.00032602152,0.0004783839,0.00027150149,0.000037643396,0.0010543014],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984898,0.00005140797,0.00034587938,0.0004864558,0.00014106005,0.0004853909],"domain_scores_gemma":[0.9991565,0.0000052892206,0.00015130488,0.0004974706,0.00009890174,0.00009056543],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030815118,0.00024821446,0.00020736402,0.00001896058,0.00022149501,0.00016823097,0.00033111792,0.00041211594,0.00027617151],"category_scores_gemma":[0.00003823992,0.00017673666,0.00006013017,0.00007745156,0.0002511463,0.000008336604,0.00038037388,0.00018572698,0.000043395583],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048191556,0.000051637897,0.0046990016,0.000031680556,0.000043116546,0.0000021377875,0.00006530864,1.7069377e-7,0.98785067,0.000009160022,0.001135859,0.0060630557],"study_design_scores_gemma":[0.00050329353,0.0003343413,0.004442774,0.0000070326305,0.0000081452245,0.000043420994,0.00008200943,0.000006461463,0.8119921,0.00002857607,0.18233575,0.00021608402],"about_ca_topic_score_codex":0.00013652998,"about_ca_topic_score_gemma":0.00003741911,"teacher_disagreement_score":0.18119988,"about_ca_system_score_codex":0.000007763305,"about_ca_system_score_gemma":0.000056013047,"threshold_uncertainty_score":0.7207112},"labels":[],"label_agreement":null},{"id":"W2154133707","doi":"10.1111/mmi.12833","title":"<scp>PhoR</scp> autokinase activity is controlled by an intermediate in wall teichoic acid metabolism that is sensed by the intracellular <scp>PAS</scp> domain during the <scp>PhoPR</scp>‐mediated phosphate limitation response of <scp><i>B</i></scp><i>acillus subtilis</i>","year":2014,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Science Foundation Ireland","keywords":"Biology; Intracellular; Phosphate; Phosphorylation; Teichoic acid; Biochemistry; Metabolism; Cell biology; Cell wall","score_opus":0.004707354592685149,"score_gpt":0.1949261419132529,"score_spread":0.19021878732056774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154133707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98441184,0.009875661,0.0011067475,0.0006370136,0.0006245199,0.001946403,0.0011857232,0.00011082668,0.00010126365],"genre_scores_gemma":[0.99114025,0.0017403195,0.00026063112,0.0036192103,0.00016321673,0.00027990824,0.0014104078,0.00020394239,0.0011821275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9901949,0.004061209,0.0013933402,0.0019828526,0.0003725514,0.001995149],"domain_scores_gemma":[0.9938402,0.0018910693,0.0013748148,0.0021361322,0.00039661347,0.0003611726],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0033549783,0.0013104067,0.0016906718,0.0003824207,0.00040200702,0.00015887263,0.0018473326,0.0024561803,0.000009556387],"category_scores_gemma":[0.004383864,0.0010113725,0.00067502423,0.0007972218,0.0014160954,0.000046653167,0.0008390233,0.0013643788,0.00005072668],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028590273,0.00044899463,0.0005044946,0.00006183551,0.0006189363,0.000045501678,0.0015494819,0.00003815333,0.98761535,0.000017889453,0.00849905,0.00031440944],"study_design_scores_gemma":[0.0069466536,0.0008160743,0.0016425473,0.00003280339,0.00023730528,0.00011795642,0.0008314814,0.00030268932,0.83356136,0.000106910455,0.15525988,0.00014433675],"about_ca_topic_score_codex":0.0001455082,"about_ca_topic_score_gemma":0.00012934576,"teacher_disagreement_score":0.15405399,"about_ca_system_score_codex":0.00013473118,"about_ca_system_score_gemma":0.00026165397,"threshold_uncertainty_score":0.9999647},"labels":[],"label_agreement":null},{"id":"W2155129790","doi":"10.1128/mbio.00180-13","title":"Divergent Protein Motifs Direct Elongation Factor P-Mediated Translational Regulation in Salmonella enterica and Escherichia coli","year":2013,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Toronto","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; British Columbia Knowledge Development Fund; National Institutes of Health","keywords":"Salmonella enterica; Salmonella; Escherichia coli; Elongation factor; Microbiology; Bacterial protein; Enterobacteriaceae; Biology; Bacteria; Chemistry; Computational biology; Genetics; Gene; Ribosome","score_opus":0.006397833388453998,"score_gpt":0.194334191373484,"score_spread":0.18793635798503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155129790","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845254,0.00015430944,0.0002281022,0.00048053393,0.00007256833,0.0004237736,0.000026404372,0.0000137198085,0.00014802112],"genre_scores_gemma":[0.9986451,0.00007145915,0.00067358965,0.00004577259,0.00005813282,0.00004909437,0.00023635852,0.000010966074,0.0002094741],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932784,0.000041713425,0.00016945176,0.00024606264,0.00006854008,0.00014637252],"domain_scores_gemma":[0.9997378,0.0000041820795,0.000055582957,0.00012019111,0.00004020964,0.000042052223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004700547,0.00010735338,0.000098672135,0.000042135656,0.000035076053,0.000023962242,0.00006356576,0.00021276089,0.00010103606],"category_scores_gemma":[0.000023726032,0.00010188112,0.000024822004,0.00008536581,0.000053188967,0.0000046506575,0.000041263203,0.0000565668,0.000014187837],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027247295,0.00003892419,0.006969551,0.000006548555,0.000010875117,2.795143e-7,0.00003305016,0.000006493331,0.9897483,0.000013752049,0.00007313272,0.003071852],"study_design_scores_gemma":[0.00043170922,0.00014973829,0.4666289,0.000008409029,0.000003251201,8.702357e-7,0.000008997719,0.0005326858,0.52774286,0.000109860324,0.0042427275,0.00013998673],"about_ca_topic_score_codex":0.00009608365,"about_ca_topic_score_gemma":0.0000593356,"teacher_disagreement_score":0.46200544,"about_ca_system_score_codex":0.00000965565,"about_ca_system_score_gemma":0.000019434709,"threshold_uncertainty_score":0.41545916},"labels":[],"label_agreement":null},{"id":"W2155408323","doi":"10.1073/pnas.1230759100","title":"Detailed map of a cis-regulatory input function","year":2003,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":343,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Lac repressor; lac operon; Operon; Gene; Transcription (linguistics); Biology; Transcription factor; ENCODE; Genetics; Computational biology; Cis-regulatory module; Regulatory sequence; Function (biology); Regulator gene; Regulation of gene expression; Escherichia coli; Enhancer","score_opus":0.017685509800124972,"score_gpt":0.2523839909041853,"score_spread":0.2346984811040603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155408323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979005,0.00022707894,0.0000032790035,0.0004596089,0.000035155368,0.00007911353,0.000005771553,0.0000022495478,0.0012872765],"genre_scores_gemma":[0.9988716,0.000030814695,0.000820198,0.00009093767,0.000040371175,0.0000031334685,2.206546e-7,0.0000025501915,0.00014012387],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924374,0.0000052682017,0.00020648472,0.00016071076,0.00029561267,0.00008821205],"domain_scores_gemma":[0.99951166,0.0000067563137,0.00027019272,0.000010268946,0.00018629234,0.000014805414],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00052784965,0.0000598996,0.00009142324,0.000063874824,0.00005268913,0.0000044093754,0.00031934344,0.00015846943,0.000010377619],"category_scores_gemma":[0.00012917163,0.000041583564,0.000057473808,0.00019512394,0.0005796174,0.00000654379,0.00006137717,0.00005589725,4.863644e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019024557,0.000022191878,0.0031885284,0.000020878171,0.000012558143,3.9926684e-10,0.000007167958,0.000008777593,0.9817242,0.014525437,0.00031901404,0.0001522462],"study_design_scores_gemma":[0.00012658593,0.00014035999,0.023752058,0.000012447984,0.0000080895925,0.000002455515,0.000027842189,0.000013514467,0.9628391,0.009964029,0.003067942,0.00004554622],"about_ca_topic_score_codex":5.377094e-7,"about_ca_topic_score_gemma":9.970436e-8,"teacher_disagreement_score":0.02056353,"about_ca_system_score_codex":0.0000047921485,"about_ca_system_score_gemma":0.000030800857,"threshold_uncertainty_score":0.21356244},"labels":[],"label_agreement":null},{"id":"W2155448955","doi":"10.1128/jb.185.2.489-495.2003","title":"Identification of Secretion Determinants of the<i>Bordetella pertussis</i>BrkA Autotransporter","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Biology; Bacterial outer membrane; Bordetella pertussis; Secretion; Escherichia coli; Signal peptide; Peptide sequence; Biochemistry; Effector; Cyclic nucleotide-binding domain; Bordetella; Amino acid; Bacteria; Genetics; Gene","score_opus":0.006980321453596829,"score_gpt":0.22978986885593303,"score_spread":0.2228095474023362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155448955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845856,0.000294493,0.0003146236,0.00009024731,0.0007032461,0.00007762667,0.000015137782,0.0000012499794,0.000044782057],"genre_scores_gemma":[0.99914455,0.0003966811,0.00025814405,0.000041527255,0.000075502714,0.0000011656892,0.0000040766345,0.000010169823,0.00006815828],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987396,0.00013797308,0.0007742558,0.00013053165,0.00008411604,0.00013351435],"domain_scores_gemma":[0.99845254,0.000010132262,0.0009864471,0.00028766805,0.00023150942,0.000031722255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036305806,0.00010554796,0.00028235005,0.00006544538,0.000026448044,0.0000040954333,0.0002629275,0.00030514935,0.000027719187],"category_scores_gemma":[0.00011894406,0.00007356685,0.00018365975,0.00008396085,0.0002128479,0.0000039095485,0.000032096872,0.00010770761,6.3711343e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009254938,0.000052301155,0.018440278,0.00002154518,0.00003769852,0.0000010627485,0.000026964834,0.000007689531,0.9796746,0.00007330145,0.00002249474,0.0015495128],"study_design_scores_gemma":[0.00034045402,0.00049004477,0.12019757,0.000019790627,0.00003908759,0.00016068565,0.000021979848,0.0000072162434,0.8709992,0.00012392674,0.007531392,0.00006863085],"about_ca_topic_score_codex":0.0000029952955,"about_ca_topic_score_gemma":0.000010870507,"teacher_disagreement_score":0.10867538,"about_ca_system_score_codex":0.0000074594245,"about_ca_system_score_gemma":0.00011393832,"threshold_uncertainty_score":0.2999969},"labels":[],"label_agreement":null},{"id":"W2155538554","doi":"10.1128/aem.67.1.403-410.2001","title":"Development and Characterization of a Xylose-Dependent System for Expression of Cloned Genes in <i>Bacillus subtilis</i> : Conditional Complementation of a Teichoic Acid Mutant","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Complementation; Operon; Bacillus subtilis; Repressor; Biology; Xylose; Biochemistry; Regulon; lac operon; Xylose isomerase; Mutant; Molecular biology; Catabolite repression; Gene; Transcription (linguistics); Plasmid; Gene expression; Genetics; Bacteria","score_opus":0.005978955923418731,"score_gpt":0.1857441330056843,"score_spread":0.17976517708226555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155538554","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998399,0.0001492457,0.0007297188,0.000008491654,0.00002312877,0.0003098604,0.00037254475,0.0000019275535,0.0000060793263],"genre_scores_gemma":[0.9965817,0.00027512334,0.0010039987,0.0000130805975,0.000011119932,0.000037790956,0.0020668004,0.000007140636,0.0000032661615],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993356,0.000018094679,0.00031853095,0.0002005347,0.000024460584,0.00010277975],"domain_scores_gemma":[0.9997174,0.0000059917506,0.00017964547,0.000074188705,0.000006065628,0.000016709078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000083737345,0.00009552186,0.0001853808,0.00004375175,0.000023102104,0.0000011249617,0.000047555535,0.00014429855,0.0000049707373],"category_scores_gemma":[0.0000010649989,0.0000896433,0.000017367445,0.000020800879,0.0001750918,0.0000018800462,0.00008297223,0.00002189559,1.5277463e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023765166,0.00007744862,0.0024936676,0.00007100344,0.000018867722,2.4940817e-7,0.00006881679,0.0000017513347,0.9941987,0.00007848351,4.0707118e-7,0.0027529614],"study_design_scores_gemma":[0.0011687817,0.00015247878,0.010440346,0.000014114882,0.00000978066,0.000022213464,0.0003419914,0.000004134152,0.98681015,0.0000097766915,0.0009450662,0.00008118211],"about_ca_topic_score_codex":0.0000027928504,"about_ca_topic_score_gemma":0.000008157277,"teacher_disagreement_score":0.007946678,"about_ca_system_score_codex":0.00001190327,"about_ca_system_score_gemma":0.000010379115,"threshold_uncertainty_score":0.36555478},"labels":[],"label_agreement":null},{"id":"W2155683646","doi":"10.1111/mmi.12628","title":"<scp><i>R</i></scp><i>hodobacter capsulatus</i> <scp>DprA</scp> is essential for <scp>RecA</scp>‐mediated gene transfer agent (<scp>RcGTA</scp>) recipient capability regulated by quorum‐sensing and the <scp>CtrA</scp> response regulator","year":2014,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; DNA; Gene; Homologous recombination; Molecular biology; Population; Plasmid; Genetics","score_opus":0.004212402246652621,"score_gpt":0.19621635587719383,"score_spread":0.1920039536305412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155683646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97413176,0.0075617805,0.009521369,0.0008848802,0.001987299,0.0032814706,0.0020859719,0.00027531895,0.00027012706],"genre_scores_gemma":[0.9795659,0.002054963,0.002430365,0.004978835,0.00085888593,0.0002599039,0.0057420316,0.00053085556,0.0035782692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9865828,0.0030298042,0.0023596806,0.003957765,0.0005076109,0.0035623352],"domain_scores_gemma":[0.9913496,0.0027031854,0.0009672496,0.0031583672,0.0009370152,0.0008845954],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0035696798,0.002170382,0.0023160467,0.00049127644,0.0008922106,0.00038222192,0.0017809714,0.0043562916,0.000010495658],"category_scores_gemma":[0.006280991,0.0019230868,0.0012784885,0.0009219318,0.0029182828,0.000045193963,0.00105494,0.0013632592,0.00008337565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018074208,0.00039725113,0.00018715984,0.00013482627,0.0010279377,0.00004177891,0.0009694808,0.000057158224,0.9419456,0.000097737,0.054162633,0.00079768576],"study_design_scores_gemma":[0.0047036274,0.0010563758,0.0006654467,0.00004952605,0.00043059228,0.00037191558,0.00029885132,0.0002077215,0.5920129,0.00023576092,0.3998121,0.00015516453],"about_ca_topic_score_codex":0.00018297925,"about_ca_topic_score_gemma":0.0001446886,"teacher_disagreement_score":0.3499327,"about_ca_system_score_codex":0.00020889912,"about_ca_system_score_gemma":0.0004497884,"threshold_uncertainty_score":0.9997952},"labels":[],"label_agreement":null},{"id":"W2155690692","doi":"10.1146/annurev.genet.36.061102.093104","title":"Genetic Engineering Using Homologous Recombination","year":2002,"lang":"en","type":"review","venue":"Annual Review of Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":517,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"McGill University","keywords":"Recombineering; Homologous recombination; Biology; FLP-FRT recombination; Genetics; Non-allelic homologous recombination; Recombination; Genetic recombination; Plasmid; Homologous chromosome; Chromosome; Cre-Lox recombination; Bacterial artificial chromosome; Computational biology; Gene; Genome; Transgene","score_opus":0.021691693601488173,"score_gpt":0.29454958929520547,"score_spread":0.2728578956937173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155690692","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00022266831,0.99801743,0.00015722105,0.000013300243,0.00049628253,0.0007956331,0.00020041101,0.000016350526,0.00008072902],"genre_scores_gemma":[0.000026832004,0.99341434,0.0056267977,0.000080833815,0.00034367084,0.000037885045,0.00023190182,0.00010533198,0.0001324095],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99755853,0.0001386288,0.0011154888,0.00060046057,0.00019582204,0.0003910422],"domain_scores_gemma":[0.9980655,0.000019440688,0.0006885175,0.0008865015,0.0002445197,0.00009553935],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022673777,0.00054314674,0.0015291779,0.00015916048,0.00003850252,0.0000123913605,0.0006380428,0.0008987778,0.000050058603],"category_scores_gemma":[0.00017098358,0.00049993594,0.000590109,0.0003422664,0.000098350756,0.000001996239,0.00035640658,0.00025748697,0.000021316262],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000012291091,0.000059780345,0.0000010126108,0.05550617,0.00016465585,0.0000062140684,0.0000035955488,0.000006860239,0.0007412656,0.000010313731,0.0009758568,0.94252306],"study_design_scores_gemma":[0.00009132657,0.00034468746,0.0000030700298,0.023314616,0.00074055255,0.00020788478,0.0000016099152,0.000021443611,0.0004931923,0.0000044121307,0.97429323,0.00048398587],"about_ca_topic_score_codex":0.0000036312028,"about_ca_topic_score_gemma":0.0000010021075,"teacher_disagreement_score":0.9733174,"about_ca_system_score_codex":0.000035935205,"about_ca_system_score_gemma":0.00017158483,"threshold_uncertainty_score":0.99974525},"labels":[],"label_agreement":null},{"id":"W2155812602","doi":"10.1016/j.jmb.2010.01.006","title":"The Glycine-Rich Motif of Pyrococcus abyssi DNA Polymerase D Is Critical for Protein Stability","year":2010,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Réseau Provincial de Recherche en Adaptation-Réadaptation; Institut National de la Santé et de la Recherche Médicale; Agence Nationale de la Recherche","keywords":"DNA polymerase; Polymerase; Mutant; Biochemistry; Thermostability; DNA; Biology; Chemistry; Molecular biology; Enzyme; Gene","score_opus":0.007582142140245699,"score_gpt":0.2776763520124902,"score_spread":0.2700942098722445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155812602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895064,0.0010913112,0.004448688,0.004015401,0.00051611767,0.0002978809,0.00006372021,0.0000036828405,0.000056769866],"genre_scores_gemma":[0.99533486,0.0000774551,0.003976602,0.0002328245,0.00030675955,0.000015869231,0.000011253604,0.000020433978,0.000023949693],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998546,0.00011266,0.0006283888,0.00026344575,0.0001028175,0.0003466954],"domain_scores_gemma":[0.99844533,0.000055529752,0.00036376936,0.00048789836,0.0005426468,0.00010484064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006204929,0.00018373308,0.00031423714,0.000060442744,0.000097655946,0.00001873898,0.00052277447,0.00055421214,0.000023685054],"category_scores_gemma":[0.0010633924,0.00012274261,0.0002625986,0.00009068706,0.000613467,0.0000028548982,0.00014490122,0.00031421796,9.224832e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041273056,0.00011387914,0.00030955713,0.000020231326,0.0000921323,0.0000035105109,0.000009767443,2.530549e-7,0.9917278,0.0026313567,0.00016619977,0.0045125824],"study_design_scores_gemma":[0.00069705775,0.0019063769,0.000280562,0.00000709548,0.00003988428,0.0000687896,0.000032583328,0.0000067781316,0.9705798,0.0029622973,0.023286993,0.00013176368],"about_ca_topic_score_codex":0.00000572183,"about_ca_topic_score_gemma":0.000017687255,"teacher_disagreement_score":0.023120793,"about_ca_system_score_codex":0.000007057391,"about_ca_system_score_gemma":0.00019488198,"threshold_uncertainty_score":0.5005298},"labels":[],"label_agreement":null},{"id":"W2156245881","doi":"10.1093/dnares/7.2.75","title":"Genomic, Transcriptional and Phenotypic Analysis of ftsE and ftsX of Neisseria gonorrhoeae","year":2000,"lang":"en","type":"article","venue":"DNA Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Primer extension; Neisseria; Gene; Neisseria gonorrhoeae; Genetics; Mutant; Sequence analysis; Bacteria; Base sequence","score_opus":0.022505719034680596,"score_gpt":0.296500066289625,"score_spread":0.2739943472549444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156245881","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99723566,0.00211204,0.000009851884,0.00015283312,0.000012537831,0.00008669138,0.00006624133,0.0000019994102,0.000322166],"genre_scores_gemma":[0.99657977,0.002745367,0.000248644,0.000013226151,0.00003176163,0.000004517958,0.00006320574,0.0000069812168,0.0003065258],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930704,0.0000626489,0.00016874389,0.00023374717,0.000055457735,0.000172378],"domain_scores_gemma":[0.9996145,0.0000127260555,0.000025928775,0.00021158783,0.00008441537,0.0000508823],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027572073,0.00006925675,0.00017209498,0.00016131738,0.000038883485,0.000009726065,0.000120315184,0.00016315094,0.00023287772],"category_scores_gemma":[0.000016426253,0.00006447814,0.00004858775,0.00026261123,0.00032974407,0.0000015284261,0.00006135434,0.000078929654,0.0000013924083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019320063,0.000039266415,0.0037490583,0.000017501941,0.00019929963,1.5332446e-7,0.000035065987,0.0000067017854,0.97733825,0.0003006832,0.000025182018,0.018095622],"study_design_scores_gemma":[0.0006896598,0.0006807731,0.43578368,0.000007834016,0.00013609706,0.000004632952,0.00007736239,0.00026014444,0.5354054,0.00028873642,0.026514078,0.00015159787],"about_ca_topic_score_codex":0.00007968076,"about_ca_topic_score_gemma":0.00008297095,"teacher_disagreement_score":0.4419329,"about_ca_system_score_codex":0.0000037661966,"about_ca_system_score_gemma":0.00003602775,"threshold_uncertainty_score":0.2629342},"labels":[],"label_agreement":null},{"id":"W2156372522","doi":"10.1128/jb.00910-07","title":"The Amino Terminus of <i>Bacillus subtilis</i> TagB Possesses Separable Localization and Functional Properties","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Bacillus subtilis; Biology; Bacterial protein; Computational biology; Biochemistry; Microbiology; Cell biology; Genetics; Bacteria","score_opus":0.010596748534871192,"score_gpt":0.21744852512526436,"score_spread":0.20685177659039317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156372522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99542356,0.0021991988,0.0014537174,0.00023406134,0.000524489,0.000067168774,0.00000542929,0.0000025487782,0.000089805886],"genre_scores_gemma":[0.99777246,0.0014685307,0.00018962663,0.00011444234,0.00028328673,0.0000011128325,0.000009138269,0.000009235676,0.00015215651],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990898,0.000053635256,0.00046285545,0.00012643123,0.000078304154,0.00018897794],"domain_scores_gemma":[0.99911785,0.000029698427,0.00037978162,0.00014972361,0.00027510416,0.00004783294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046478733,0.000109475855,0.00019929204,0.00005770763,0.000091215974,0.000018054434,0.00013764805,0.00023742816,0.0000075195694],"category_scores_gemma":[0.00012255031,0.000068957896,0.0000617482,0.00006347768,0.0003981057,0.0000061107635,0.000086896776,0.00010748054,6.308314e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005826127,0.000031921943,0.00324701,0.000014564319,0.000058759808,0.000005768234,0.000018246967,0.000017924362,0.9898517,0.00005870492,0.0003243631,0.0057884045],"study_design_scores_gemma":[0.00053374463,0.0013409312,0.032885842,0.000018201328,0.0000306609,0.00091476797,0.00011747884,0.000016139213,0.86109036,0.00011305756,0.10282634,0.00011246761],"about_ca_topic_score_codex":0.000008216854,"about_ca_topic_score_gemma":0.000039292197,"teacher_disagreement_score":0.12876135,"about_ca_system_score_codex":0.00000929116,"about_ca_system_score_gemma":0.000089436726,"threshold_uncertainty_score":0.28120214},"labels":[],"label_agreement":null},{"id":"W2156382630","doi":"10.1111/j.1365-2958.2004.04459.x","title":"Regulated degradation of chromosome replication proteins DnaA and CtrA in <i>Caulobacter crescentus</i>","year":2005,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Universität Basel","keywords":"Caulobacter crescentus; DnaA; Biology; SeqA protein domain; DNA replication; Replication (statistics); Genetics; Circular bacterial chromosome; Cell biology; Chromosome; DNA; Origin of replication; Bacterial protein; Bacteria; Gene; Virology","score_opus":0.0041975604342913055,"score_gpt":0.205765198838472,"score_spread":0.20156763840418068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156382630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99731094,0.00092331565,0.00040193344,0.0008451722,0.00004411685,0.00035615923,0.00003114062,0.000012087691,0.0000751471],"genre_scores_gemma":[0.99628943,0.00024619186,0.0025394785,0.00027469723,0.00004345033,0.000021441001,0.00046417603,0.000018357197,0.000102758],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998848,0.00008337928,0.00032029074,0.00048454537,0.000028005868,0.00023573436],"domain_scores_gemma":[0.99927497,0.0000031819116,0.0001314941,0.0004959561,0.000059935046,0.00003449223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014450042,0.00015329313,0.00019270628,0.000091232476,0.000022028491,0.000007759583,0.00015844846,0.00044042314,0.000012036426],"category_scores_gemma":[0.000039293318,0.00015231523,0.000046005858,0.000122072,0.00016555739,0.000003404821,0.0001231977,0.00009889239,0.0000037378254],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006460556,0.00007552022,0.0006057334,0.000013267765,0.000022122964,0.0000017385618,0.000010188442,0.000009106247,0.9925992,0.00014802981,0.0000810145,0.0063695027],"study_design_scores_gemma":[0.00061141537,0.0002579113,0.002128502,0.000013562682,0.000009896853,0.00007302971,0.0000043702858,0.000016662038,0.962074,0.000031973243,0.034627385,0.00015130162],"about_ca_topic_score_codex":0.000020822223,"about_ca_topic_score_gemma":0.00007461155,"teacher_disagreement_score":0.03454637,"about_ca_system_score_codex":0.00001729423,"about_ca_system_score_gemma":0.00003275151,"threshold_uncertainty_score":0.6211235},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"agree"},{"id":"W2156473421","doi":"10.1016/s0378-1097(03)00577-9","title":"The XerC recombinase of<i>Proteus mirabilis</i>: characterization and interaction with other tyrosine recombinases","year":2003,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"H2020 European Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Recombinase; Proteus mirabilis; Biology; Site-specific recombination; Genetics; Escherichia coli; Gene; Recombination","score_opus":0.005303824013280907,"score_gpt":0.19239847771224078,"score_spread":0.18709465369895986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156473421","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99715805,0.00020147777,0.00041681615,0.0014931305,0.00040693328,0.0002503944,0.000029145718,0.00001053495,0.000033496628],"genre_scores_gemma":[0.9978969,0.00031703003,0.0005738966,0.00079407456,0.000046804562,0.000025436642,0.00016087676,0.000022702076,0.00016225853],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991473,0.00012573766,0.0002039762,0.00029586724,0.000020338153,0.00020679149],"domain_scores_gemma":[0.99945855,0.000020413117,0.00016282153,0.00028250748,0.000049288807,0.000026440674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015691337,0.00015288718,0.00014883475,0.000037403457,0.000104978666,0.000019240468,0.00011497614,0.00019129722,0.000010053366],"category_scores_gemma":[0.00004751177,0.00010449143,0.00003631771,0.000072308176,0.00035302227,0.0000039875877,0.00004422006,0.000102048434,0.0000027894005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016893775,0.00003877076,0.001695005,0.000006890943,0.000045570087,6.7537917e-7,0.000015350814,7.6716896e-7,0.99535185,0.000091308495,0.00030196158,0.002282925],"study_design_scores_gemma":[0.00045753704,0.00041936082,0.0014974879,0.000014181504,0.000013606591,0.00010337966,0.000024285971,6.616945e-7,0.81512517,0.000010739353,0.18220581,0.00012775583],"about_ca_topic_score_codex":0.00001734649,"about_ca_topic_score_gemma":0.00004184913,"teacher_disagreement_score":0.18190385,"about_ca_system_score_codex":0.000008253478,"about_ca_system_score_gemma":0.000020684354,"threshold_uncertainty_score":0.42610368},"labels":[],"label_agreement":null},{"id":"W2156549753","doi":"10.1016/j.mib.2007.03.013","title":"Small RNAs controlling iron metabolism","year":2007,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":252,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Biology; Shigella flexneri; Bacteria; Escherichia coli; Vibrio cholerae; Intracellular; Metabolism; RNA; Microbiology; Cell biology; Gene; Biochemistry; Genetics","score_opus":0.07664823695316553,"score_gpt":0.34815714580744817,"score_spread":0.27150890885428264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156549753","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00022246738,0.9868123,0.00030824827,0.000021024502,0.011601824,0.0007457067,0.0002216397,0.000022803522,0.000044001205],"genre_scores_gemma":[0.000025753232,0.9935325,0.0003266643,0.00002746313,0.0020975098,0.000074603595,0.0037864184,0.000068168076,0.000060942308],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969935,0.00027871854,0.0009977374,0.0009768849,0.000038224433,0.00071497355],"domain_scores_gemma":[0.9987367,0.00003892718,0.00045388387,0.0006198994,0.00006554973,0.00008506666],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00046105616,0.0006251961,0.0014997168,0.00038014702,0.000053239997,0.000024370145,0.0006839225,0.0019298841,0.000026469394],"category_scores_gemma":[0.00006916113,0.00053947145,0.00047842486,0.00024039437,0.00023034275,0.0000013482078,0.0004329752,0.00072812865,0.00007136833],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036592024,0.00011298519,0.000004661856,0.0029323841,0.00007996486,0.0000011625741,0.00000523392,0.0000010266863,0.021802476,0.00018646065,0.001086051,0.973751],"study_design_scores_gemma":[0.0006090621,0.000121352554,0.0000028939123,0.0015302028,0.00008363954,0.00010289447,0.000003011624,4.878987e-7,0.00071932905,0.000015984971,0.99626285,0.0005483185],"about_ca_topic_score_codex":0.0000066796306,"about_ca_topic_score_gemma":0.000015817812,"teacher_disagreement_score":0.9951768,"about_ca_system_score_codex":0.000047119735,"about_ca_system_score_gemma":0.00022074026,"threshold_uncertainty_score":0.9997057},"labels":[],"label_agreement":null},{"id":"W2156733538","doi":"10.1074/jbc.m111.255794","title":"Pseudomonas aeruginosa d-Arabinofuranose Biosynthetic Pathway and Its Role in Type IV Pilus Assembly","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; University of Toronto; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Pilus; Pilin; Pseudomonas aeruginosa; Biology; Microbiology; Mutant; Gene cluster; Gene; Protein subunit; Heterologous; Mycobacterium smegmatis; Bacteria; Escherichia coli; Biochemistry; Genetics; Mycobacterium tuberculosis","score_opus":0.019828276939942508,"score_gpt":0.2242179817767841,"score_spread":0.20438970483684157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156733538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99541837,0.00352358,0.000007417707,0.000106755615,0.0001295258,0.00006284814,0.000008703504,0.000006625743,0.00073617074],"genre_scores_gemma":[0.99740887,0.0018458999,0.00040738058,0.00007519299,0.00019043587,0.0000019174258,0.000007162699,0.0000109035245,0.00005223654],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989117,0.00004860067,0.0004158286,0.00026908822,0.0000846,0.00027022796],"domain_scores_gemma":[0.9993346,0.000013414977,0.00023123718,0.00017345052,0.00012262851,0.00012472105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024809488,0.00019093817,0.0002879942,0.000037617006,0.000029944045,0.000013182092,0.0002932486,0.00060844637,0.00006437085],"category_scores_gemma":[0.00018880154,0.00013901017,0.00009243222,0.00010611634,0.00012698176,0.0000042238407,0.00016265073,0.00026654865,0.0000043486816],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002932866,0.00014331235,0.0021133285,0.000013443815,0.000026286803,0.00004505077,0.00002130288,4.9707523e-7,0.9953323,0.00002311177,0.000022355647,0.0019657267],"study_design_scores_gemma":[0.000549765,0.0007590917,0.005363518,0.000023537876,0.000010242493,0.00038380388,0.00006027064,0.000008418135,0.98898566,0.0002737683,0.003391898,0.00019000041],"about_ca_topic_score_codex":0.0000031730544,"about_ca_topic_score_gemma":0.0000018737808,"teacher_disagreement_score":0.006346612,"about_ca_system_score_codex":0.000013294546,"about_ca_system_score_gemma":0.00005959111,"threshold_uncertainty_score":0.56686705},"labels":[],"label_agreement":null},{"id":"W2156763510","doi":"10.1261/rna.2036210","title":"Binding and release of the 6S transcriptional control RNA","year":2010,"lang":"en","type":"article","venue":"RNA","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Michael Smith Health Research BC","keywords":"Biology; RNA; Transcription (linguistics); RNA polymerase; Non-coding RNA; RNA-dependent RNA polymerase; Molecular biology; Binding site; RNA-induced transcriptional silencing; RNA editing; Genetics; Cell biology; Gene","score_opus":0.00422496632574001,"score_gpt":0.19619888115321865,"score_spread":0.19197391482747864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156763510","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841934,0.00016319753,0.00006708268,0.0006759029,0.00027963342,0.000069302005,0.000036380876,0.0000032429741,0.0002859264],"genre_scores_gemma":[0.9993332,0.00007035092,0.00017788207,0.00011364471,0.00012275139,0.000002642053,0.000006450596,0.0000057162742,0.00016738086],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99965554,0.000012379522,0.00008740309,0.00011428952,0.000042441265,0.0000879381],"domain_scores_gemma":[0.999744,0.0000032783446,0.000039567512,0.00016331735,0.000024203122,0.000025641488],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059526366,0.000055611814,0.00006209559,0.000013034991,0.00003910939,0.000006168772,0.00010809965,0.00015705216,0.000019199058],"category_scores_gemma":[0.000026349668,0.000039055085,0.00004113724,0.000029219436,0.00012607378,7.1013585e-7,0.00003114054,0.00009238352,0.0000011775766],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026147532,0.0000130303315,0.00055927184,0.0000041955277,0.000013234423,1.9367698e-7,0.000004513647,5.376644e-7,0.9951132,0.0009005231,0.00008449838,0.0032806683],"study_design_scores_gemma":[0.0003553922,0.000067581925,0.0099277245,0.0000033184538,0.000012367932,0.000009434646,0.00000527586,0.000016376996,0.96198344,0.00011234705,0.027451077,0.00005568409],"about_ca_topic_score_codex":0.000007024253,"about_ca_topic_score_gemma":0.000025075618,"teacher_disagreement_score":0.033129767,"about_ca_system_score_codex":0.0000010189137,"about_ca_system_score_gemma":0.000022679696,"threshold_uncertainty_score":0.15926202},"labels":[],"label_agreement":null},{"id":"W2156977920","doi":"10.1128/jb.186.21.7175-7185.2004","title":"The N Terminus of MinD Contains Determinants Which Affect Its Dynamic Localization and Enzymatic Activity","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Biology; Mutant; Escherichia coli; Neisseria gonorrhoeae; Green fluorescent protein; Enzyme; Cytoplasm; ATPase; Biochemistry; Cell biology; Genetics; Gene","score_opus":0.006677140918629068,"score_gpt":0.25078705421392,"score_spread":0.24410991329529094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156977920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978832,0.0005810955,0.00079583836,0.00029795905,0.0003051589,0.00011500301,0.000009045395,0.0000013498617,0.000011351873],"genre_scores_gemma":[0.99859846,0.0010680914,0.00019317726,0.000030099287,0.00007554077,0.000001930453,0.0000035781457,0.000010385101,0.000018762485],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915165,0.00010492027,0.0003611308,0.00014049062,0.00006154676,0.00018028636],"domain_scores_gemma":[0.9990562,0.00003260637,0.0005059767,0.00017572475,0.00017942252,0.000050021765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029624088,0.00012556036,0.0002777019,0.00005697357,0.00007212517,0.000015924355,0.00019122908,0.0002854352,0.0000029923654],"category_scores_gemma":[0.00020126773,0.00008489326,0.000063788066,0.00006884598,0.00017997083,0.000006049323,0.000095543226,0.00012374744,8.3643255e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025117776,0.000042714888,0.0011512726,0.000020364867,0.000052553605,0.0000085688935,0.000029538798,0.000024220248,0.9857304,0.000014621703,0.000005454274,0.01266911],"study_design_scores_gemma":[0.001369032,0.0031427122,0.063896,0.000058276066,0.0000585876,0.0011942007,0.0000459843,0.00015714024,0.92765963,0.00017378657,0.002088417,0.00015622853],"about_ca_topic_score_codex":0.0000051308907,"about_ca_topic_score_gemma":0.00020207278,"teacher_disagreement_score":0.06274473,"about_ca_system_score_codex":0.00001956755,"about_ca_system_score_gemma":0.00013119508,"threshold_uncertainty_score":0.34618467},"labels":[],"label_agreement":null},{"id":"W2157378009","doi":"10.1016/j.jmb.2008.04.039","title":"Structural Mechanism of Transcriptional Autorepression of the Escherichia coli RelB/RelE Antitoxin/Toxin Module","year":2008,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; University of Toronto","funders":"Canada Research Chairs","keywords":"RELB; Repressor; Antitoxin; Operon; Binding site; Repressor lexA; Dimer; Chemistry; Escherichia coli; Molecular biology; Stereochemistry; Biology; Biophysics; Transcription factor; Biochemistry; Toxin; Gene; P50","score_opus":0.009440888467640924,"score_gpt":0.23098066057309286,"score_spread":0.22153977210545192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157378009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947383,0.0010730152,0.0030334485,0.00033192398,0.00063044624,0.000104942425,0.000031103857,0.0000026463777,0.000054178927],"genre_scores_gemma":[0.99574363,0.00035333345,0.0035904855,0.00012241383,0.00012299378,0.0000013423969,0.000011504572,0.000014845554,0.000039427327],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877703,0.00015999026,0.0005488814,0.00018443422,0.00014696762,0.00018269132],"domain_scores_gemma":[0.99879473,0.0000074382633,0.00058795355,0.0003174994,0.00024266048,0.00004969484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017663365,0.00014848472,0.00032342697,0.00006908711,0.000057095247,0.0000025809727,0.00045492974,0.00042847742,0.000022795366],"category_scores_gemma":[0.00008566619,0.0001005529,0.00028871553,0.000120355995,0.0003449771,0.000003244679,0.00012962692,0.00020025407,3.8021687e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016482259,0.000054151307,0.0008248252,0.000011558326,0.00010233622,0.000005649259,0.000019343059,0.000073986215,0.9955803,0.0028519784,0.0000847199,0.00022634043],"study_design_scores_gemma":[0.0006966258,0.0008730795,0.006860723,0.000019831943,0.00003208905,0.00019738823,0.000011051964,0.000046661484,0.9880581,0.0017070497,0.0013934288,0.00010400585],"about_ca_topic_score_codex":0.000011673603,"about_ca_topic_score_gemma":0.0000028329205,"teacher_disagreement_score":0.0075222244,"about_ca_system_score_codex":0.000009586274,"about_ca_system_score_gemma":0.00016286275,"threshold_uncertainty_score":0.41004282},"labels":[],"label_agreement":null},{"id":"W2157383543","doi":"10.1146/annurev-genet-110711-155421","title":"Chromosome Replication and Segregation in Bacteria","year":2012,"lang":"en","type":"review","venue":"Annual Review of Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":210,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Biotechnology and Biological Sciences Research Council; Wellcome Trust","keywords":"Biology; Chromosome segregation; Genetics; Gene duplication; Cell division; Circular bacterial chromosome; Pre-replication complex; Chromosome; DNA replication; Origin of replication; Origin recognition complex; Replication (statistics); Control of chromosome duplication; Plasmid; Cell; DNA; Eukaryotic DNA replication; Gene","score_opus":0.02299543600011083,"score_gpt":0.3207198669634675,"score_spread":0.29772443096335666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157383543","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009367792,0.9978633,0.000005145081,0.00004466341,0.00014447696,0.00075113575,0.00017480996,0.000005152508,0.00007456553],"genre_scores_gemma":[0.00021138786,0.9975389,0.00085903186,0.00009869921,0.00018771196,0.000067450135,0.0009305699,0.00004056819,0.000065630236],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99823517,0.0001489556,0.000788331,0.00049281155,0.00009940054,0.00023532179],"domain_scores_gemma":[0.998413,0.0000119306505,0.00051866355,0.0008837584,0.00010616324,0.00006645787],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044468997,0.00030664742,0.00097581436,0.0000882229,0.00001719826,0.0000073524347,0.00027460002,0.0006145473,0.000016999013],"category_scores_gemma":[0.000099569865,0.00026413638,0.00016096361,0.00020376871,0.000104723156,0.0000029871487,0.0002591348,0.00014818384,0.00000865272],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000020926411,0.00003283417,0.000008274026,0.04293339,0.000029435634,3.5462523e-7,0.0000057347715,1.4794009e-8,0.002305064,0.000039776227,0.00013780185,0.9545052],"study_design_scores_gemma":[0.00007660975,0.00016644238,0.000068535155,0.012439678,0.00028539068,0.000039970953,0.0000024934136,1.8689063e-7,0.0012160303,0.000013425859,0.9854379,0.00025330504],"about_ca_topic_score_codex":0.0000037277812,"about_ca_topic_score_gemma":0.0000069942425,"teacher_disagreement_score":0.9853001,"about_ca_system_score_codex":0.000016151434,"about_ca_system_score_gemma":0.00012085617,"threshold_uncertainty_score":0.9999811},"labels":[],"label_agreement":null},{"id":"W2157652209","doi":"10.1128/jb.00131-06","title":"Isolation of the <i>rstA</i> Gene as a Multicopy Suppressor of YjeE, an Essential ATPase of Unknown Function in <i>Escherichia coli</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Escherichia coli; Gene; Function (biology); Genetics; ATPase; Suppressor; Enterobacteriaceae; Isolation (microbiology); Molecular biology; Enzyme; Microbiology; Biochemistry","score_opus":0.006163649085839337,"score_gpt":0.2350519136011984,"score_spread":0.22888826451535907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157652209","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973641,0.00020222653,0.0015066523,0.000101482154,0.00062521966,0.00013188702,0.00002222874,0.0000015207917,0.00004468164],"genre_scores_gemma":[0.99768853,0.00016120753,0.0018236982,0.00008291226,0.00019444442,0.0000010450786,0.00001719515,0.000013257534,0.000017685234],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985233,0.00015396021,0.0008721914,0.00015684144,0.000105793304,0.00018790102],"domain_scores_gemma":[0.9983502,0.00002483077,0.0010056471,0.00028273455,0.00028782946,0.00004876746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005188822,0.00012976698,0.00037185737,0.000114119306,0.000020424699,0.00000352141,0.00028032513,0.0004166177,0.000021448803],"category_scores_gemma":[0.00010248513,0.0000983425,0.00014794312,0.00015934878,0.00025027455,0.000008787933,0.00010080641,0.00017739943,2.8551227e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021951753,0.00024251943,0.005097943,0.000028514374,0.00006384329,0.0000023407742,0.000053156804,0.0000641936,0.9916026,0.000080622056,0.000017522038,0.00055156194],"study_design_scores_gemma":[0.0011807138,0.0021780352,0.06927299,0.00002200963,0.00004414774,0.00004361329,0.00004798002,0.000031420346,0.9253514,0.00008082679,0.0016649831,0.00008192018],"about_ca_topic_score_codex":0.000058308244,"about_ca_topic_score_gemma":0.00013530992,"teacher_disagreement_score":0.06625125,"about_ca_system_score_codex":0.000013045523,"about_ca_system_score_gemma":0.0001354596,"threshold_uncertainty_score":0.40102908},"labels":[],"label_agreement":null},{"id":"W2157767457","doi":"10.1016/s0014-5793(00)01808-1","title":"The HslU ATPase acts as a molecular chaperone in prevention of aggregation of SulA, an inhibitor of cell division in <i>Escherichia coli</i>","year":2000,"lang":"en","type":"article","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; Institute of Genetics; Lotte Foundation; Japan Science and Technology Corporation","keywords":"Chaperone (clinical); Escherichia coli; Protease; Chemistry; Proteolysis; Biochemistry; ATPase; Cell biology; Biology; Enzyme; Gene","score_opus":0.004441395480528589,"score_gpt":0.21481830990359105,"score_spread":0.21037691442306247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157767457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99903035,0.00022329773,0.000052710668,0.00035966423,0.00004621473,0.0002239207,0.0000074545123,0.0000023901496,0.000053971224],"genre_scores_gemma":[0.9991728,0.0002479846,0.00031954533,0.00014842082,0.00002082982,0.0000090472195,0.00004494296,0.000011017942,0.000025427675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913865,0.00009571039,0.0003264946,0.00019236261,0.00009992466,0.0001468462],"domain_scores_gemma":[0.9995141,0.000008522952,0.0001555688,0.00027103262,0.000028088203,0.000022687722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018701502,0.000096150456,0.00015086452,0.00005191509,0.000014485545,0.000004809795,0.0001586934,0.00016623057,0.000009000374],"category_scores_gemma":[0.000023912997,0.00008361177,0.00005202373,0.00015599701,0.00010815587,0.00000477105,0.000043641623,0.000072015806,9.073313e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001991546,0.00015699603,0.00049676193,0.00002420843,0.000006591595,0.0000017854538,0.000054975113,0.00016079699,0.9933451,0.000017805776,0.000010862741,0.0055249804],"study_design_scores_gemma":[0.0006986285,0.000580545,0.005992117,0.000043158343,0.0000062037693,4.905144e-7,0.000024983585,0.000045081975,0.9917206,0.000040140014,0.00076770975,0.00008034442],"about_ca_topic_score_codex":0.000092944756,"about_ca_topic_score_gemma":0.00010922519,"teacher_disagreement_score":0.005495355,"about_ca_system_score_codex":0.000008798956,"about_ca_system_score_gemma":0.000030925843,"threshold_uncertainty_score":0.3409589},"labels":[],"label_agreement":null},{"id":"W2157831032","doi":"10.1074/jbc.m114.561928","title":"Crystal Structure and Site-directed Mutational Analysis Reveals Key Residues Involved in Escherichia coli ZapA Function","year":2014,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"FtsZ; Escherichia coli; Cell division; Biology; Cell biology; Cytoskeleton; Chemistry; Biochemistry; Cell","score_opus":0.008187292510461438,"score_gpt":0.21838609737495562,"score_spread":0.2101988048644942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157831032","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989641,0.00046506256,0.00020172498,0.00017683177,0.000058683803,0.00004333952,0.000029097655,0.000008306114,0.000052902546],"genre_scores_gemma":[0.99762654,0.00016073692,0.0015314255,0.00016095075,0.00031737235,0.0000014352432,0.00015153344,0.0000067635424,0.000043264143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895966,0.000089628506,0.00041678347,0.0002536766,0.000104327264,0.00017594192],"domain_scores_gemma":[0.99928296,0.000030981682,0.0003081721,0.00013902676,0.00015055874,0.000088274865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027179276,0.00015483818,0.00032410366,0.000062564744,0.000038251077,0.000025395535,0.00013988634,0.000565403,0.000068604684],"category_scores_gemma":[0.00033572898,0.00011589868,0.000115674404,0.00025194386,0.00013654072,0.0000049018254,0.00008170847,0.0002163102,2.9122123e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029616052,0.000037288737,0.039393343,0.000012523053,0.00012610234,0.0000035888588,0.0000075159396,0.0000466855,0.9597575,0.0000073277924,0.00010768981,0.00020429195],"study_design_scores_gemma":[0.00073195517,0.0005073246,0.23244745,0.000013065012,0.00010965097,0.000030209894,0.00003774645,0.00010205217,0.7623079,0.0007229561,0.0027900215,0.00019967573],"about_ca_topic_score_codex":0.0000042244087,"about_ca_topic_score_gemma":0.000024580559,"teacher_disagreement_score":0.1974496,"about_ca_system_score_codex":0.000015603322,"about_ca_system_score_gemma":0.00003451327,"threshold_uncertainty_score":0.47262108},"labels":[],"label_agreement":null},{"id":"W2158054734","doi":"10.1128/jb.00934-08","title":"Interaction of Penicillin-Binding Protein 2 with Soluble Lytic Transglycosylase B1 in<i>Pseudomonas aeruginosa</i>","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Pseudomonas aeruginosa; Biology; Lytic cycle; Microbiology; Penicillin; Penicillin binding proteins; Antibiotics; Bacteria; Virology; Genetics; Virus","score_opus":0.01215391954613366,"score_gpt":0.22735234478401214,"score_spread":0.2151984252378785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158054734","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988415,0.00015011891,0.00021863397,0.00024605697,0.0002809848,0.00015981689,0.000006429936,0.0000034251898,0.00009298493],"genre_scores_gemma":[0.99774426,0.00039479235,0.0015146664,0.000039895483,0.00016026232,0.0000052576524,0.000015225946,0.000018634177,0.0001070115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998735,0.00009187739,0.0006166261,0.00020385554,0.00009784637,0.00025475657],"domain_scores_gemma":[0.99903685,0.000015369349,0.0005205039,0.00020115396,0.00016034594,0.00006575068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022076254,0.00016951964,0.0004154585,0.00019142404,0.000037413305,0.000005961008,0.0002365259,0.0003067743,0.000027638265],"category_scores_gemma":[0.000048674032,0.00013419644,0.00011847104,0.00012697182,0.0002134205,0.000010898065,0.000050058992,0.0002807459,0.0000024335516],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013258645,0.00013320056,0.0030806316,0.000021589927,0.00006493529,0.00007114916,0.000054654178,0.00004446012,0.99462515,0.000017752105,0.000046192057,0.00051440933],"study_design_scores_gemma":[0.0018498815,0.0036595555,0.0038466877,0.000077735334,0.000024904077,0.0020450486,0.00007394302,0.000011532023,0.9824844,0.000022837814,0.005726546,0.00017694106],"about_ca_topic_score_codex":0.000021485117,"about_ca_topic_score_gemma":0.00006529199,"teacher_disagreement_score":0.012140774,"about_ca_system_score_codex":0.000027843369,"about_ca_system_score_gemma":0.00019818461,"threshold_uncertainty_score":0.54723716},"labels":[],"label_agreement":null},{"id":"W2158331582","doi":"10.1128/jb.185.20.5936-5942.2003","title":"Cloning and Characterization of Archaeal Type I Signal Peptidase from <i>Methanococcus voltae</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Signal peptidase; Biology; Signal peptide; Biochemistry; Gene product; Methanococcus; S-layer; Peptide sequence; Escherichia coli; Gene; Molecular biology; Gene expression","score_opus":0.008353583686711576,"score_gpt":0.22182644234575813,"score_spread":0.21347285865904655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158331582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983177,0.00037935644,0.00065829593,0.00008336472,0.00042139017,0.000060119466,0.000029503464,0.0000023932803,0.0000478359],"genre_scores_gemma":[0.99677706,0.00067138777,0.002086301,0.0001044051,0.00025800572,8.781345e-7,0.000057237816,0.000013592503,0.00003113503],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990304,0.00014246372,0.00043249063,0.00017012889,0.0000594655,0.000165061],"domain_scores_gemma":[0.9991146,0.00002006984,0.0004594521,0.00014531017,0.00018963878,0.0000709685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022937323,0.0001286431,0.00030425208,0.00007904252,0.000028051883,0.000009404075,0.00013096385,0.00029844118,0.00005449826],"category_scores_gemma":[0.000090583504,0.00011076745,0.000067453766,0.00006986608,0.0001698065,0.000005703161,0.00006692378,0.00014811686,0.0000012622119],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025839798,0.00003705027,0.0054534073,0.0000072579737,0.00007172842,0.00000599048,0.000034835204,0.0000012886557,0.9917354,0.00006944347,0.000019635281,0.0023055426],"study_design_scores_gemma":[0.0006536665,0.0015756346,0.026180783,0.000019677656,0.00003406434,0.00018122491,0.00002386693,0.000004589471,0.9495007,0.00018782532,0.021516027,0.00012197306],"about_ca_topic_score_codex":0.0000075534645,"about_ca_topic_score_gemma":0.0000044817884,"teacher_disagreement_score":0.042234756,"about_ca_system_score_codex":0.00000650108,"about_ca_system_score_gemma":0.0000966937,"threshold_uncertainty_score":0.45169654},"labels":[],"label_agreement":null},{"id":"W2158352115","doi":"10.1016/j.cell.2005.10.031","title":"Identification of a Bacterial Type III Effector Family with G Protein Mimicry Functions","year":2006,"lang":"en","type":"article","venue":"Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":265,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Mimicry; Effector; Identification (biology); Genetics; Molecular mimicry; Bacterial protein; Type (biology); Computational biology; Bacteria; Cell biology; Zoology; Ecology; Antibody","score_opus":0.0036297704883776934,"score_gpt":0.18115528135993747,"score_spread":0.17752551087155977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158352115","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99830437,0.00015207204,0.00055652426,0.00002308953,0.00020847906,0.0002309017,0.000027508882,0.00001097401,0.00048607436],"genre_scores_gemma":[0.9972857,0.00001196622,0.0002658371,0.0000096371505,0.00021192546,0.000016790375,0.00027906575,0.000012936333,0.001906113],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99947566,0.000019668507,0.00015577477,0.0001919052,0.000045969286,0.00011104392],"domain_scores_gemma":[0.9995683,0.0000018078739,0.000095145755,0.00023994892,0.00007755232,0.000017290608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000050630413,0.00008557706,0.00008812344,0.000028896946,0.00002987532,0.000011337305,0.00009063494,0.00016131776,0.000018445424],"category_scores_gemma":[0.0000045666497,0.00007253195,0.00002984894,0.00008217378,0.000070308306,0.0000012767954,0.00003477594,0.000039714287,0.000017297329],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019322218,0.00007165398,0.00006528867,0.000017610282,0.000009323757,4.1126503e-7,0.0000023862738,0.0000059617073,0.9984764,0.000010791266,0.00095701165,0.00018992535],"study_design_scores_gemma":[0.00047700174,0.00043926327,0.002102237,0.000004895625,0.000015819127,0.000001940219,0.000008806528,0.000004338868,0.9720408,0.000010840255,0.024802914,0.00009118877],"about_ca_topic_score_codex":0.00003234551,"about_ca_topic_score_gemma":0.000025163,"teacher_disagreement_score":0.02643566,"about_ca_system_score_codex":0.000004745675,"about_ca_system_score_gemma":0.0000418989,"threshold_uncertainty_score":0.2957767},"labels":[],"label_agreement":null},{"id":"W2158370682","doi":"10.1128/jb.00717-07","title":"Investigation of Transcription Repression and Small-Molecule Responsiveness by TetR-Like Transcription Factors Using a Heterologous<i>Escherichia coli</i>-Based Assay","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto; McMaster University","funders":"","keywords":"Biology; Escherichia coli; TetR; Psychological repression; Heterologous; Transcription (linguistics); Transcription factor; Escherichia coli Proteins; Genetics; Repressor; Computational biology; Cell biology; Molecular biology; Gene; Gene expression","score_opus":0.019899554661161323,"score_gpt":0.24090386034740108,"score_spread":0.22100430568623974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158370682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9847545,0.00058003195,0.013875969,0.00014414072,0.00046670515,0.00014412252,0.000024314782,0.0000062370377,0.0000039744327],"genre_scores_gemma":[0.9971073,0.0001597464,0.0022974124,0.00023667373,0.000090292946,0.0000012868688,0.00007665494,0.000021981921,0.000008596377],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983468,0.0003412275,0.00069210195,0.0002690582,0.000102610706,0.0002481883],"domain_scores_gemma":[0.9988061,0.000041906842,0.0006216317,0.00019396305,0.00022496088,0.00011142232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00088930683,0.00020224223,0.0003799574,0.00018302615,0.000063218205,0.000014318267,0.00016575033,0.0006230825,0.000005760478],"category_scores_gemma":[0.000092859824,0.00017569012,0.00013166634,0.00012458305,0.00027899843,0.000011171637,0.000028985323,0.00022181783,1.0619253e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015822274,0.000041995925,0.0067093833,0.000034440436,0.00005603741,0.000004996802,0.00007226138,0.000024913641,0.9908841,0.0000030502028,0.000026014075,0.0005605367],"study_design_scores_gemma":[0.001016806,0.0018974121,0.03519513,0.000046399833,0.00006636285,0.0000623152,0.00008298332,0.00006495295,0.9601631,0.00002534631,0.0012202668,0.00015891658],"about_ca_topic_score_codex":0.000028457893,"about_ca_topic_score_gemma":0.000025693374,"teacher_disagreement_score":0.030721035,"about_ca_system_score_codex":0.000027278042,"about_ca_system_score_gemma":0.00011032952,"threshold_uncertainty_score":0.71644354},"labels":[],"label_agreement":null},{"id":"W2158771008","doi":"10.1111/j.1365-2958.2005.04693.x","title":"The <i>Escherichia coli</i> baby cell column: a novel cell synchronization method provides new insight into the bacterial cell cycle","year":2005,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institutes of Health; Petroleum Technology Alliance Canada","keywords":"Biology; Escherichia coli; Synchronization (alternating current); Cell; Column (typography); Cell synchronization; Cell biology; Cell cycle; Computational biology; Microbiology; Genetics; Computer science; Gene; Telecommunications","score_opus":0.0034071025568967175,"score_gpt":0.2006063711504447,"score_spread":0.19719926859354797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158771008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9472117,0.005208858,0.041162673,0.0032080968,0.0008103364,0.0009591226,0.000050162853,0.000050257546,0.0013388045],"genre_scores_gemma":[0.97267956,0.0006879073,0.020766001,0.0027123946,0.0007196267,0.000062976374,0.00041013997,0.00008632619,0.0018750501],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977584,0.00032076734,0.0004748971,0.00073739607,0.00007639953,0.0006321292],"domain_scores_gemma":[0.99857736,0.000045243003,0.00027172937,0.00086235546,0.00013115627,0.00011216685],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003426339,0.00039860734,0.00029405006,0.000044527256,0.0003959757,0.00012879637,0.00089103135,0.00076139433,0.00004261902],"category_scores_gemma":[0.00004512137,0.00028113407,0.00018220364,0.00022453409,0.0003281909,0.0000065326576,0.00053375075,0.00031911684,0.000056398032],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013335673,0.00014043854,0.000011105703,0.000013876135,0.000042824697,0.0000022508466,0.00014697848,0.0001884124,0.99261725,0.000080209094,0.0034235846,0.003199697],"study_design_scores_gemma":[0.000703118,0.00026222813,0.000011107299,0.0000024269084,0.000034163277,0.000013362214,0.00002301387,0.000083353625,0.54322624,0.000020908934,0.45541176,0.00020831625],"about_ca_topic_score_codex":0.0001349843,"about_ca_topic_score_gemma":0.00033654156,"teacher_disagreement_score":0.4519882,"about_ca_system_score_codex":0.000051501313,"about_ca_system_score_gemma":0.0003436486,"threshold_uncertainty_score":0.99996406},"labels":[],"label_agreement":null},{"id":"W2159211507","doi":"10.1128/jb.183.1.12-27.2001","title":"Mutational Analysis of the OprM Outer Membrane Component of the MexA-MexB-OprM Multidrug Efflux System of <i>Pseudomonas aeruginosa</i>","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Cystic Fibrosis Foundation","keywords":"Pseudomonas aeruginosa; Biology; Efflux; Bacterial outer membrane; Component (thermodynamics); Microbiology; Genetics; Mutation; Pseudomonadales; Flagellum; Bacteria; Gene; Escherichia coli","score_opus":0.007197094864567868,"score_gpt":0.21872400461363628,"score_spread":0.2115269097490684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159211507","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979922,0.00022516945,0.00014157096,0.00056574284,0.0007392826,0.00014932969,0.00009699315,0.0000021927856,0.0000875087],"genre_scores_gemma":[0.9990462,0.00018125857,0.000427317,0.00009363645,0.00015591607,0.0000024175597,0.000024837549,0.000012578992,0.000055802393],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980322,0.0002808029,0.0010666044,0.00019659818,0.00022037003,0.0002034052],"domain_scores_gemma":[0.9973995,0.000058793983,0.0015631359,0.00051685295,0.00041213678,0.00004959937],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043684084,0.0001839928,0.00071325107,0.00016518947,0.00004981837,0.00000567265,0.00072668906,0.00033925613,0.000031375122],"category_scores_gemma":[0.000082635175,0.000106926585,0.0006393866,0.00035785072,0.00044805027,0.0000047175686,0.00027053902,0.00019974682,5.6333397e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026927702,0.00012582893,0.019162767,0.000044325945,0.0011677329,0.0000038625776,0.000064817745,0.0007543312,0.97794294,0.00010909232,0.000052023017,0.0003029834],"study_design_scores_gemma":[0.00095192983,0.00038996316,0.21022457,0.000058540998,0.0006841724,0.00036450746,0.00011410399,0.00018981408,0.78419346,0.000013928619,0.0026962124,0.00011880454],"about_ca_topic_score_codex":0.00005673673,"about_ca_topic_score_gemma":0.00005657617,"teacher_disagreement_score":0.1937495,"about_ca_system_score_codex":0.000025836029,"about_ca_system_score_gemma":0.00013309703,"threshold_uncertainty_score":0.43603396},"labels":[],"label_agreement":null},{"id":"W2159285792","doi":"10.1139/w00-109","title":"Phase variation of F165<sub>1</sub>(Prs-like) fimbriae from<i>Escherichia coli</i>causing septicaemia in animals","year":2000,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phase variation; Fimbria; Operon; Escherichia coli; Biology; Pilus; Virulence; Gene; Microbiology; Mutant; Genetics; Molecular biology","score_opus":0.006283483149635848,"score_gpt":0.2087286143857021,"score_spread":0.20244513123606625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159285792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975993,0.0012180802,0.000097223936,0.00029251652,0.00036916707,0.00011387979,0.00021199552,0.000002110736,0.00009575099],"genre_scores_gemma":[0.99802727,0.00035019245,0.00089840277,0.0003729692,0.00021670914,0.000001459966,0.000086571185,0.000019433413,0.000026979234],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986239,0.00013228696,0.00059567456,0.00024458615,0.00003163411,0.00037190877],"domain_scores_gemma":[0.9991536,0.000016923022,0.00028522062,0.00022125496,0.0001331272,0.00018988177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002525985,0.00017572743,0.00036563896,0.0001795454,0.00004461775,0.000015800195,0.0002422953,0.00055753934,0.00022496395],"category_scores_gemma":[0.00005916142,0.00017830115,0.00011017386,0.00016402967,0.00020588315,0.000004897072,0.000022850058,0.00023033668,0.000010853422],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019605078,0.00005737355,0.00026108703,0.000005853572,0.00007298869,0.000041240994,0.0000706607,0.000029348113,0.9946439,0.000012808105,0.00071682,0.0038918392],"study_design_scores_gemma":[0.0020914692,0.0009992109,0.0032352302,0.000039557468,0.000041622712,0.00014484125,0.000025283993,0.0000111094305,0.9569124,0.000094349845,0.036206137,0.00019875889],"about_ca_topic_score_codex":0.00078184257,"about_ca_topic_score_gemma":0.0066686952,"teacher_disagreement_score":0.037731502,"about_ca_system_score_codex":0.00005810616,"about_ca_system_score_gemma":0.0006393303,"threshold_uncertainty_score":0.727091},"labels":[],"label_agreement":null},{"id":"W2159892809","doi":"10.1139/cjm-2015-0408","title":"Functional reconstitution of an unusual <i>Firmicutes</i> σ factor into a Gram-negative heterologous host","year":2015,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Bacillus subtilis; Heterologous; Transcription (linguistics); RNA polymerase; Escherichia coli; Firmicutes; Promoter; RNA; Sigma factor; Genetics; Protein subunit; Transcription factor; Molecular biology; Microbiology; Bacteria; Gene; Gene expression","score_opus":0.01597297941481433,"score_gpt":0.2173220908189319,"score_spread":0.20134911140411757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159892809","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973094,0.00054512254,0.00030902273,0.00035434854,0.0011568038,0.00008052358,0.0001844473,0.0000026095292,0.0000577419],"genre_scores_gemma":[0.9979081,0.000029065443,0.001278075,0.00030977506,0.00029900644,0.0000012894358,0.0001292198,0.000010815381,0.000034667853],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990268,0.000116590316,0.0003717008,0.00019358327,0.000031861302,0.00025948073],"domain_scores_gemma":[0.99876654,0.000009548294,0.00029431336,0.00017661318,0.00040946537,0.00034352814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019903744,0.000143329,0.00025048686,0.00018321368,0.00005374563,0.000011522448,0.0002536318,0.0004502108,0.000026889535],"category_scores_gemma":[0.00015978783,0.0001281276,0.00009144264,0.00008455743,0.00055160874,0.00000746472,0.000032961343,0.00018135157,0.0000056429076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017793724,0.000025525835,0.0011129321,0.000003510166,0.00007822784,0.000018742281,0.00007930691,0.000020911524,0.9953198,0.000051925723,0.0016128808,0.0014983128],"study_design_scores_gemma":[0.001133186,0.0031406002,0.0018071409,0.000012033641,0.000026263984,0.0018157526,0.00014382378,0.000002346292,0.93773925,0.00030035365,0.053695038,0.00018420265],"about_ca_topic_score_codex":0.0010441075,"about_ca_topic_score_gemma":0.016776947,"teacher_disagreement_score":0.05758053,"about_ca_system_score_codex":0.000060359347,"about_ca_system_score_gemma":0.0014304665,"threshold_uncertainty_score":0.93619305},"labels":[],"label_agreement":null},{"id":"W2160337123","doi":"10.1073/pnas.0808657106","title":"Force generation by a dynamic Z-ring in <i>Escherichia coli</i> cell division","year":2008,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Pacific Institute for the Mathematical Sciences","keywords":"FtsZ; Cell division; Motor protein; Ring (chemistry); Bacterial cell structure; Tubulin; Biology; Biophysics; Cell biology; Microtubule; Cell; Chemistry; Biochemistry; Bacteria; Genetics","score_opus":0.01705385071518932,"score_gpt":0.25317938670295465,"score_spread":0.2361255359877653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160337123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998479,0.00019711415,0.000005523451,0.000525561,0.00001580763,0.00009342365,0.000008433663,0.0000023512364,0.0006727711],"genre_scores_gemma":[0.9981908,0.00028624904,0.0011499817,0.00015487915,0.000029297562,0.0000049054524,9.547748e-7,0.0000030587153,0.00017987569],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992682,0.0000040125956,0.00018363708,0.00018849189,0.0002524674,0.00010320918],"domain_scores_gemma":[0.9997366,0.000004995487,0.0001634436,0.000007527771,0.000073562725,0.0000138457335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029163543,0.000062450534,0.00007579456,0.000049213726,0.00008940236,0.00000614298,0.0003491401,0.00013623884,0.0000014052164],"category_scores_gemma":[0.000050978837,0.000046427776,0.00003278109,0.00021512764,0.00031454104,0.000009842159,0.00009693704,0.000073717936,2.4629836e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000056436534,0.000023346314,0.0014015626,0.000008124349,0.000001829972,2.2386522e-9,0.000018935338,0.000043359647,0.9979922,0.00011251444,0.00030706477,0.00008538633],"study_design_scores_gemma":[0.00014660593,0.00007474576,0.010951616,0.000008947473,0.0000015517273,0.000002452945,0.000011633403,0.0014922266,0.98637515,0.00042711402,0.00045238284,0.00005557263],"about_ca_topic_score_codex":0.0000034186962,"about_ca_topic_score_gemma":3.5040725e-7,"teacher_disagreement_score":0.011617079,"about_ca_system_score_codex":0.0000097033635,"about_ca_system_score_gemma":0.000019112895,"threshold_uncertainty_score":0.18932697},"labels":[],"label_agreement":null},{"id":"W2160520352","doi":"10.1186/s13036-015-0006-z","title":"No training required: experimental tests support homology-based DNA assembly as a best practice in synthetic biology","year":2015,"lang":"en","type":"article","venue":"Journal of Biological Engineering","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; University of Ottawa","keywords":"Homology (biology); Synthetic biology; Best practice; Computer science; DNA sequencing; Computational biology; Machine learning; DNA; Biology; Genetics","score_opus":0.03173754320384727,"score_gpt":0.294755742697132,"score_spread":0.26301819949328475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160520352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966058,0.0011060345,0.000540561,0.00033868392,0.00065839227,0.00010358081,0.000005803327,0.000014849879,0.0006263056],"genre_scores_gemma":[0.9915951,0.00012933892,0.007573997,0.00025635908,0.0003767854,0.000008822467,0.000017126897,0.000019518433,0.000022941493],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859166,0.00010077099,0.0005326178,0.00028141573,0.00010196679,0.00039158692],"domain_scores_gemma":[0.9991123,0.00008111327,0.00025568143,0.0001934082,0.00017434283,0.00018314419],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006928918,0.00022063822,0.00037592987,0.00015575242,0.0000211271,0.00001972872,0.0003213505,0.00058737653,0.00001803583],"category_scores_gemma":[0.0022757563,0.00017467664,0.00012104966,0.00013500606,0.00011675842,0.000010108928,0.00011712311,0.00030576036,0.000019956531],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002884308,0.00024147211,0.00016991505,0.0000040429422,0.000036523117,0.00012484766,0.000037503687,0.00045802636,0.99736273,0.000105274536,0.000057163765,0.001114075],"study_design_scores_gemma":[0.0028263042,0.019788606,0.00025848232,0.000080476224,0.000036310325,0.002270364,0.00050398184,0.00038543332,0.8500814,0.0000877329,0.12310232,0.00057862233],"about_ca_topic_score_codex":0.0000076129145,"about_ca_topic_score_gemma":0.000001420172,"teacher_disagreement_score":0.14728136,"about_ca_system_score_codex":0.000049390477,"about_ca_system_score_gemma":0.0002190468,"threshold_uncertainty_score":0.7123106},"labels":[],"label_agreement":null},{"id":"W2161406364","doi":"10.1128/jb.186.15.5062-5077.2004","title":"The Homogentisate Pathway: a Central Catabolic Pathway Involved in the Degradation of <scp>l</scp> -Phenylalanine, <scp>l</scp> -Tyrosine, and 3-Hydroxyphenylacetate in <i>Pseudomonas putida</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":263,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Comisión Interministerial de Ciencia y Tecnología; Institute for Catastrophic Loss Reduction","keywords":"Pseudomonas putida; Biology; Biochemistry; Catabolism; Repressor; Isomerase; TetR; Gene; Enzyme; Transcription factor","score_opus":0.008111262167202588,"score_gpt":0.20783967237442694,"score_spread":0.19972841020722434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161406364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99512863,0.0033681793,0.00011926616,0.00048876565,0.00047438897,0.00029218913,0.000047488335,0.0000050306053,0.000076046344],"genre_scores_gemma":[0.99341583,0.0054174224,0.00048595146,0.00026698745,0.00024167351,0.000012963681,0.0000639157,0.000027419048,0.000067830166],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99757934,0.00033832132,0.000969087,0.0003314131,0.00017318674,0.0006086311],"domain_scores_gemma":[0.9984,0.00018103982,0.0007697836,0.00040436475,0.00014572243,0.00009909409],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00089031406,0.00029805812,0.0005079188,0.00017253362,0.000098031815,0.000059655762,0.0006112963,0.00046038986,0.0000010118388],"category_scores_gemma":[0.00056819915,0.000194724,0.00015223637,0.00030184185,0.000431774,0.000019595736,0.00019174823,0.00046251822,0.0000016916429],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005510106,0.00015897855,0.011832345,0.000020947497,0.00006254688,0.000039768976,0.0004307411,0.00007609438,0.98507774,0.0005198471,0.0001331314,0.0015927675],"study_design_scores_gemma":[0.004463327,0.0019360036,0.24328026,0.000091164016,0.00005304501,0.0008701284,0.0015465516,0.00003056028,0.6783647,0.0016447514,0.06758115,0.00013833852],"about_ca_topic_score_codex":0.00011698441,"about_ca_topic_score_gemma":0.00095581263,"teacher_disagreement_score":0.306713,"about_ca_system_score_codex":0.000042539097,"about_ca_system_score_gemma":0.00029248535,"threshold_uncertainty_score":0.7940614},"labels":[],"label_agreement":null},{"id":"W2161490340","doi":"10.1128/aem.00958-13","title":"Whole-Genome Transcriptional Analysis of Escherichia coli during Heat Inactivation Processes Related to Industrial Cooking","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Escherichia coli; Heat shock; Chemistry; Materials science; Analytical Chemistry (journal); Gene; Chromatography; Heat shock protein; Biochemistry","score_opus":0.004851425384541905,"score_gpt":0.16923982055020204,"score_spread":0.16438839516566012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161490340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991605,0.00012767485,0.000050674676,0.00013012845,0.00003909772,0.00027250222,0.0001606047,0.000006684567,0.000052091724],"genre_scores_gemma":[0.99802864,0.000115064184,0.00013524256,0.00010825492,0.000032027085,0.0000375462,0.0014725006,0.0000111988675,0.000059512688],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992263,0.000017779337,0.00023090956,0.00031878578,0.000026131062,0.00018014353],"domain_scores_gemma":[0.9997579,0.0000050663793,0.000057630074,0.00012479909,0.000007811729,0.00004681303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000039792412,0.00013574939,0.00021201467,0.00010074917,0.000060266415,0.000008603096,0.00009076766,0.0003348558,0.000085055406],"category_scores_gemma":[0.000004315264,0.0001310353,0.000040223003,0.0001826436,0.0001529722,0.0000030991976,0.00009275409,0.00008267645,0.000007874052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006283586,0.000055409288,0.0018249478,0.000007873487,0.00025845584,1.4267643e-7,0.000051891326,0.0001334217,0.99735034,0.000019953413,0.0000096467265,0.0002251029],"study_design_scores_gemma":[0.00060199463,0.00020086722,0.06165945,0.0000030006313,0.000104504164,0.0000054964216,0.00015809845,0.000004766014,0.93219686,0.000017614917,0.0048677297,0.00017964399],"about_ca_topic_score_codex":0.000020340367,"about_ca_topic_score_gemma":0.000007537943,"teacher_disagreement_score":0.06515349,"about_ca_system_score_codex":0.000018038505,"about_ca_system_score_gemma":0.000012740848,"threshold_uncertainty_score":0.5343464},"labels":[],"label_agreement":null},{"id":"W2161902864","doi":"10.1128/jb.00141-10","title":"Membrane Topology and Identification of Critical Amino Acid Residues in the Wzx O-Antigen Translocase from <i>Escherichia coli</i> O157:H4","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Aspartic acid; Periplasmic space; Biology; Biochemistry; Membrane topology; Lysine; Amino acid; Cysteine; Threonine; Alanine; Peptide sequence; Serine; Escherichia coli; Transmembrane domain; Gene; Enzyme","score_opus":0.008282368964098867,"score_gpt":0.2512182623970928,"score_spread":0.2429358934329939,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161902864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958597,0.0005206974,0.00018352548,0.0026526279,0.00061327167,0.00009451356,0.000041216394,0.0000022584575,0.00003218074],"genre_scores_gemma":[0.9974758,0.0007161819,0.0010999169,0.00033290827,0.00032872858,0.0000037764464,0.00002462321,0.000010806356,0.0000072647185],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986163,0.00023180597,0.00066238735,0.0002128947,0.00007694302,0.00019971277],"domain_scores_gemma":[0.99915206,0.00007873167,0.0002953016,0.00029391065,0.00012788818,0.000052095686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005629924,0.00013730642,0.0003357937,0.00008464339,0.00004065881,0.000017847213,0.00036400545,0.00051355234,0.000040440777],"category_scores_gemma":[0.00027197492,0.000100654324,0.000082535815,0.0000788029,0.00063919346,0.000007736314,0.000059137823,0.00038123617,0.0000011426944],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028366,0.00010171512,0.0032644176,0.000013070939,0.00003484379,0.000018354454,0.00012977295,4.899073e-7,0.99475026,0.0002730977,0.000052607946,0.0010776819],"study_design_scores_gemma":[0.00054908195,0.00068857323,0.11589957,0.0000066909647,0.00003806766,0.00021924324,0.00014903065,0.0000046758855,0.8774367,0.0005036303,0.004402764,0.000101969024],"about_ca_topic_score_codex":0.0000563235,"about_ca_topic_score_gemma":0.0002952506,"teacher_disagreement_score":0.11731358,"about_ca_system_score_codex":0.0000034911618,"about_ca_system_score_gemma":0.00007252576,"threshold_uncertainty_score":0.41045642},"labels":[],"label_agreement":null},{"id":"W2161941484","doi":"10.1128/jb.183.2.520-527.2001","title":"Negative Control of <i>rpoS</i> Expression by Phosphoenolpyruvate:Carbohydrate Phosphotransferase System in <i>Escherichia coli</i>","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"rpoS; PEP group translocation; Biology; Sigma factor; Transcription (linguistics); Phosphoenolpyruvate carboxykinase; Transcriptional regulation; Gene; Gene expression; Transcription factor; Regulation of gene expression; RNA polymerase; Genetics; Cell biology; Promoter; Escherichia coli","score_opus":0.004619271059260951,"score_gpt":0.20267043557304426,"score_spread":0.19805116451378332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161941484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99637973,0.0013588221,0.0010919713,0.00023732641,0.0005308393,0.00020560378,0.00006927282,0.000006544785,0.00011986557],"genre_scores_gemma":[0.99765277,0.0013757613,0.00047084392,0.00026776627,0.00014400015,0.000009215866,0.00002199164,0.000025980211,0.000031683558],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981713,0.00020490347,0.0009086037,0.0002663555,0.000112603506,0.0003361878],"domain_scores_gemma":[0.9987872,0.00003327022,0.00059630524,0.00026361388,0.00021263288,0.00010694828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003505713,0.00024120293,0.00064351235,0.00010738802,0.000033735658,0.000012116109,0.00036046116,0.0005237669,0.000023677403],"category_scores_gemma":[0.00005646378,0.00020198371,0.00016673906,0.00018513277,0.0001913068,0.000009132617,0.000059962873,0.00028483034,0.0000019667361],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021074861,0.00015443584,0.002244427,0.000025678866,0.00008044642,0.00004166364,0.000040013736,0.000040926785,0.9944276,0.000024233754,0.00035425997,0.00045877753],"study_design_scores_gemma":[0.0031047934,0.001643554,0.0019130247,0.00008667647,0.000034934015,0.00011563769,0.00010069757,0.00003245337,0.9775064,0.000022970353,0.015246223,0.00019264659],"about_ca_topic_score_codex":0.00005454264,"about_ca_topic_score_gemma":0.000021022792,"teacher_disagreement_score":0.016921261,"about_ca_system_score_codex":0.00003578415,"about_ca_system_score_gemma":0.00012485748,"threshold_uncertainty_score":0.8236657},"labels":[],"label_agreement":null},{"id":"W2161954042","doi":"10.1128/jb.187.12.4104-4115.2005","title":"Characterization of Gla <sub>KP</sub> , a UDP-Galacturonic Acid C4-Epimerase from <i>Klebsiella pneumoniae</i> with Extended Substrate Specificity","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biochemistry; Enzyme; Biology; Glucuronic acid; Divalent; NAD+ kinase; Uridine diphosphate; Chemistry; Polysaccharide","score_opus":0.005818118648544755,"score_gpt":0.19929917615543646,"score_spread":0.1934810575068917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161954042","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974896,0.00041405694,0.00072306534,0.000675931,0.0003795235,0.00015479416,0.000107466876,0.000009701202,0.000045893972],"genre_scores_gemma":[0.9958716,0.0018400231,0.00084208156,0.00023818726,0.00094755756,0.000003972114,0.00019660957,0.000038169954,0.000021792795],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980584,0.00016498579,0.0008635995,0.00038122313,0.00015353473,0.0003782947],"domain_scores_gemma":[0.9980236,0.000019154539,0.0010997704,0.00042736123,0.00029055722,0.00013951497],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024530294,0.00031601783,0.0006089782,0.00013015351,0.000054351,0.000029225674,0.0003971632,0.00055419724,0.000064617816],"category_scores_gemma":[0.000031988708,0.00025428558,0.00018643765,0.00012991705,0.00026676193,0.000018967257,0.00010785342,0.00034321906,0.000009759065],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011253863,0.00019269534,0.0014741444,0.00001093292,0.00019278955,0.000022216343,0.000036006495,0.000014795041,0.9894087,0.000016217618,0.00003973518,0.0074664187],"study_design_scores_gemma":[0.001168826,0.0019139793,0.05346669,0.00003288602,0.000078713994,0.00033974423,0.000018013516,0.000012500509,0.9348592,0.000043265034,0.007814397,0.00025178186],"about_ca_topic_score_codex":0.000007899953,"about_ca_topic_score_gemma":0.000080245845,"teacher_disagreement_score":0.05454946,"about_ca_system_score_codex":0.00003436448,"about_ca_system_score_gemma":0.00021257917,"threshold_uncertainty_score":0.99999094},"labels":[],"label_agreement":null},{"id":"W2162242271","doi":"10.1128/jb.187.22.7826-7839.2005","title":"Catabolite Repression and Activation in <i>Bacillus subtilis</i> : Dependency on CcpA, HPr, and HprK","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"CCPA; Catabolite repression; Biology; Bacillus subtilis; Fed-batch culture; Psychological repression; Biochemistry; Gene; Mutant; Genetics; Gene expression; Bacteria","score_opus":0.007051796554817285,"score_gpt":0.23183479137634186,"score_spread":0.22478299482152458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162242271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99760044,0.0007270058,0.00004839479,0.0012876118,0.00015874628,0.00006999879,0.000004815428,0.0000026815615,0.000100336205],"genre_scores_gemma":[0.9962918,0.0022226751,0.00065422576,0.00042372732,0.0003369998,0.0000019051862,0.000011966117,0.000010179506,0.00004647902],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908185,0.00008960305,0.00037313587,0.00022308037,0.000058584377,0.0001737519],"domain_scores_gemma":[0.9994353,0.00002106106,0.00025322483,0.00016450531,0.000060256658,0.000065643886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026288902,0.0001267924,0.00023387556,0.00012022524,0.00003279383,0.000014939507,0.000106913634,0.00034422617,0.0000093057415],"category_scores_gemma":[0.00011981992,0.000103372106,0.000034279146,0.000049253737,0.00009548461,0.000009977176,0.00010070958,0.00021189757,9.689924e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038275545,0.000047733993,0.0038796985,0.0000065066492,0.000013970855,0.000004031507,0.000037653528,0.000007669875,0.9443298,0.000044036988,0.00008417971,0.05116195],"study_design_scores_gemma":[0.0021611943,0.0019827464,0.21162334,0.000075144504,0.000018837169,0.00051870086,0.00008744584,0.000028875627,0.7188181,0.00030354774,0.06411569,0.00026633297],"about_ca_topic_score_codex":0.000011278313,"about_ca_topic_score_gemma":0.000041491672,"teacher_disagreement_score":0.22551167,"about_ca_system_score_codex":0.000015114693,"about_ca_system_score_gemma":0.0000414832,"threshold_uncertainty_score":0.42153922},"labels":[],"label_agreement":null},{"id":"W2162372515","doi":"10.1128/jb.184.20.5789-5799.2002","title":"Conserved Response Regulator CtrA and IHF Binding Sites in the α-Proteobacteria <i>Caulobacter crescentus</i> and <i>Rickettsia prowazekii</i> Chromosomal Replication Origins","year":2002,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Dalhousie University","funders":"Medical Research Council; Medical Research Council Canada; Dalhousie University","keywords":"Caulobacter crescentus; Biology; Rickettsia prowazekii; Response regulator; Mutant; Genetics; Cell cycle; Gene","score_opus":0.01621639599000572,"score_gpt":0.2368009282927948,"score_spread":0.2205845323027891,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162372515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945221,0.00088730204,0.000009030528,0.0040713516,0.00017836678,0.00028139888,0.000022833397,0.000006427685,0.000021174634],"genre_scores_gemma":[0.99698275,0.0014325661,0.0006071659,0.0005917787,0.0002916952,0.000013027849,0.000020623009,0.000019430088,0.00004094846],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99818945,0.00045180894,0.0005728528,0.000380239,0.00009495196,0.00031071747],"domain_scores_gemma":[0.99887544,0.00006184615,0.0004304152,0.00044748324,0.00009798077,0.00008682388],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008959151,0.00021921813,0.00033830217,0.00013341226,0.00009025228,0.00007432668,0.00029493394,0.0004100372,0.000024766048],"category_scores_gemma":[0.00024774944,0.00015805083,0.00007228438,0.0001386682,0.00031761258,0.000017531342,0.00012774747,0.00028298466,0.0000023424025],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008533934,0.00007406447,0.016428987,0.000018198789,0.000039077568,0.000025254714,0.00012426065,2.0537378e-7,0.9807729,0.00003598859,0.0005040815,0.0011235684],"study_design_scores_gemma":[0.002914014,0.003687547,0.43850145,0.000092060436,0.000076677294,0.0046426766,0.00021154358,0.000030126595,0.434365,0.000097824886,0.11490261,0.00047845466],"about_ca_topic_score_codex":0.0000050540452,"about_ca_topic_score_gemma":0.000017017419,"teacher_disagreement_score":0.5464079,"about_ca_system_score_codex":0.000028005925,"about_ca_system_score_gemma":0.000045711804,"threshold_uncertainty_score":0.6445126},"labels":[],"label_agreement":null},{"id":"W2162546076","doi":"10.1016/j.pep.2012.05.002","title":"Purification of a Tat leader peptide by co-expression with its chaperone","year":2012,"lang":"en","type":"article","venue":"Protein Expression and Purification","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Michael Smith Health Research BC; Canadian Institutes of Health Research; Ohio State University","keywords":"Peptide; Chaperone (clinical); Escherichia coli; Biochemistry; Fusion protein; Translocase; Chemistry; Recombinant DNA; Protein subunit; Dimer; Signal peptide; Biophysics; Biology; Gene","score_opus":0.01297603724499343,"score_gpt":0.24056688088298073,"score_spread":0.2275908436379873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162546076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99284863,0.0032298805,0.0026495568,0.00034534867,0.00003800035,0.00056101294,0.000031079493,0.000019558702,0.00027690988],"genre_scores_gemma":[0.9945436,0.0004572413,0.0036992556,0.000037468755,0.00010625811,0.0001498791,0.00029318524,0.000020622887,0.00069248106],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999052,0.000078003555,0.00022115224,0.0002976882,0.00013620478,0.0002149896],"domain_scores_gemma":[0.99928576,0.000004803667,0.00021032662,0.00032218033,0.000081909435,0.0000950285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019612633,0.00015091055,0.00013153034,0.00004638572,0.00008699171,0.000015644975,0.00012659271,0.00027840442,0.00003334529],"category_scores_gemma":[0.000032662647,0.00011492989,0.000024142355,0.0000687482,0.00010627661,0.000016266942,0.000043998385,0.00009034141,0.000007484848],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016163728,0.00013518559,0.00060036086,0.00004369081,0.000006892221,4.6825694e-8,0.000080867234,5.714446e-7,0.99507767,0.0001076245,0.00083506736,0.0029503591],"study_design_scores_gemma":[0.0004016164,0.00021260652,0.0013858973,0.00005554811,0.000007506858,0.000004648739,0.00009494089,0.000009134712,0.94651634,0.000010973366,0.051148783,0.00015200001],"about_ca_topic_score_codex":0.0000040817445,"about_ca_topic_score_gemma":5.464776e-7,"teacher_disagreement_score":0.050313715,"about_ca_system_score_codex":0.0000057135007,"about_ca_system_score_gemma":0.00001767381,"threshold_uncertainty_score":0.4686705},"labels":[],"label_agreement":null},{"id":"W2162816841","doi":"10.1128/jb.187.15.5470-5481.2005","title":"Functional Analysis of Conserved Gene Products Involved in Assembly of<i>Escherichia coli</i>Capsules and Exopolysaccharides: Evidence for Molecular Recognition between Wza and Wzc for Colanic Acid Biosynthesis","year":2005,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":108,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"U.S. Consumer Product Safety Commission","keywords":"Biology; Biochemistry; Amino acid; Escherichia coli; Tyrosine; Gene","score_opus":0.04392306557285292,"score_gpt":0.27066752004603906,"score_spread":0.22674445447318614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162816841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99454486,0.0022996396,0.0018904906,0.0007510015,0.00007465992,0.00028457353,0.0001523687,0.0000018703325,5.4925465e-7],"genre_scores_gemma":[0.98510003,0.0013442884,0.013210789,0.000087135486,0.00014771124,0.000017550607,0.00007758042,0.0000121421135,0.0000027555695],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872327,0.000103388986,0.0006789109,0.00026172207,0.000060468086,0.00017226774],"domain_scores_gemma":[0.9986047,0.00013951838,0.0006556182,0.0001475971,0.00040117968,0.000051364284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060281495,0.00014473517,0.00059509685,0.00027138172,0.000026312,0.000010048685,0.00012165905,0.00032030256,0.00000420939],"category_scores_gemma":[0.00061964686,0.00013213372,0.00013989833,0.00019680435,0.00017778271,0.0000126826,0.000058397145,0.000079355756,7.28791e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090153905,0.000053765238,0.0077529782,0.00007433922,0.00068706565,5.752194e-7,0.000018120221,0.000008328295,0.9873737,0.000008979779,0.000020805686,0.0030998136],"study_design_scores_gemma":[0.000866344,0.0012616303,0.080734335,0.000044797653,0.00062678626,0.000010905196,0.00003389267,0.000060479342,0.9158751,0.00007475631,0.00029024834,0.0001207291],"about_ca_topic_score_codex":0.000012061344,"about_ca_topic_score_gemma":0.00007371168,"teacher_disagreement_score":0.07298136,"about_ca_system_score_codex":0.000014213807,"about_ca_system_score_gemma":0.00013315343,"threshold_uncertainty_score":0.5388257},"labels":[],"label_agreement":null},{"id":"W2162970370","doi":"10.1007/s00775-006-0151-4","title":"Siderophore-mediated iron transport in Bacillus subtilis and Corynebacterium glutamicum","year":2006,"lang":"en","type":"article","venue":"JBIC Journal of Biological Inorganic Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Siderophore; Enterobactin; Corynebacterium glutamicum; Bacillus subtilis; Chemistry; Escherichia coli; Bacteria; Corynebacterium; Biochemistry; Ferric; Moiety; Stereochemistry; Biology; Gene; Organic chemistry","score_opus":0.006040181745702056,"score_gpt":0.1969805290803962,"score_spread":0.19094034733469414,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162970370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977,0.0015901693,0.000026567004,0.00029017968,0.00012026265,0.000067140674,0.000030313158,0.0000084801095,0.00016689478],"genre_scores_gemma":[0.9978879,0.0012978548,0.00016222813,0.00009264581,0.00035260268,0.0000016979465,0.00010011649,0.000014647148,0.000090276364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986619,0.000035081554,0.00059299456,0.00030305464,0.00009995849,0.00030705842],"domain_scores_gemma":[0.9993527,0.000019606447,0.00026349135,0.0001856537,0.00008407652,0.0000944795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020964621,0.00021872451,0.00034054343,0.00003737371,0.000030320913,0.000014659747,0.0002504818,0.00069068343,0.000099627345],"category_scores_gemma":[0.00008477782,0.00016862886,0.00009928249,0.00013017126,0.0002658324,0.0000040963387,0.00008928186,0.00031749444,0.0000021173278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001721459,0.000112709124,0.016755184,0.000017480634,0.000017677714,0.000053589327,0.000006246937,0.0000022270774,0.9823467,0.0000029755438,0.00009275081,0.00042032264],"study_design_scores_gemma":[0.0011459214,0.00042667592,0.08800209,0.000017386974,0.000017247361,0.00047862716,0.00005872298,0.0000042475663,0.9027288,0.00011361132,0.006758816,0.00024783265],"about_ca_topic_score_codex":0.000023172823,"about_ca_topic_score_gemma":0.000023815528,"teacher_disagreement_score":0.07961787,"about_ca_system_score_codex":0.000031348285,"about_ca_system_score_gemma":0.00007913069,"threshold_uncertainty_score":0.68764853},"labels":[],"label_agreement":null},{"id":"W2162990448","doi":"10.1016/j.str.2008.08.006","title":"Structural Characterization of the Type-III Pilot-Secretin Complex from Shigella flexneri","year":2008,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Secretin; Shigella flexneri; Chemistry; Membrane; Secretion; Amphiphile; Biophysics; Biochemistry; Bacterial outer membrane; Helix (gastropod); Crystallography; Stereochemistry; Escherichia coli; Biology","score_opus":0.01454363620911306,"score_gpt":0.21818681307050036,"score_spread":0.2036431768613873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162990448","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99861896,0.00007140618,0.000020039726,0.00016778542,0.00058928266,0.00014493427,0.0002880711,0.000010968954,0.00008855996],"genre_scores_gemma":[0.9980124,0.00007579881,0.0002799569,0.00019811178,0.00037643994,0.0000011420206,0.00087826373,0.00001696592,0.00016092339],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926084,0.000041141204,0.00018914303,0.00024855044,0.00010231793,0.00015802555],"domain_scores_gemma":[0.99932134,0.0000027579,0.00013964057,0.00042279882,0.00008139983,0.000032078056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000017439868,0.00014728964,0.00015339378,0.000017803713,0.00010652021,0.000008244515,0.0003193683,0.00023872852,0.00025503445],"category_scores_gemma":[0.000015910184,0.00010231069,0.00005375913,0.00009829328,0.00022550265,0.0000017899754,0.00017049175,0.00011029667,0.0000020945188],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010328973,0.000004685183,0.0034310885,0.000004308915,0.000025973757,5.583425e-7,0.000039877916,0.0000041512776,0.9957877,0.000054457698,0.00015489271,0.00038901911],"study_design_scores_gemma":[0.00029777572,0.0001470649,0.25267076,0.0000037333075,0.000009906116,0.000016555066,0.000007624443,0.000021419868,0.7388811,0.00015794339,0.0076713124,0.000114803006],"about_ca_topic_score_codex":0.00004701919,"about_ca_topic_score_gemma":0.000046334477,"teacher_disagreement_score":0.2569066,"about_ca_system_score_codex":0.0000058972096,"about_ca_system_score_gemma":0.000051852843,"threshold_uncertainty_score":0.41721088},"labels":[],"label_agreement":null},{"id":"W2163619442","doi":"10.1128/jb.00674-09","title":"Potential Role of Group IIC-<i>attC</i>Introns in Integron Cassette Formation","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research","keywords":"Biology; Intron; Integron; Gene cassette; Gene; Genetics; Group II intron; Terminator (solar); Plasmid; RNA; RNA splicing","score_opus":0.003623831241354488,"score_gpt":0.21151632470644102,"score_spread":0.20789249346508654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163619442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975242,0.00049230875,0.0008164368,0.00068369554,0.0002922116,0.0000730561,0.000009264495,0.0000025601773,0.000106254316],"genre_scores_gemma":[0.9976573,0.0004818964,0.0013516914,0.00017233158,0.0002844165,9.646224e-7,0.00003476987,0.0000073498013,0.000009263506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889654,0.00009207999,0.0006006006,0.00013036639,0.0000674852,0.00021295696],"domain_scores_gemma":[0.9992357,0.0000062927934,0.0004343681,0.00016937239,0.00010709278,0.00004719376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025495343,0.0001248204,0.00030691831,0.00016611398,0.000018482415,0.000008737628,0.00023485378,0.00035916228,0.000018531398],"category_scores_gemma":[0.00004812178,0.0001061298,0.000121455305,0.00007871474,0.000078695855,0.000010473508,0.000055834233,0.00021192891,0.0000016567957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003623855,0.00009556993,0.0005990626,0.0000048191314,0.00002149297,0.000008756962,0.000027267433,0.00002682811,0.98578143,0.00016394083,0.00012004455,0.012788429],"study_design_scores_gemma":[0.0019035343,0.0063847154,0.096353695,0.00004411318,0.000045754703,0.0011220705,0.00018537763,0.00011784224,0.87114793,0.0020864666,0.0203538,0.0002546822],"about_ca_topic_score_codex":0.000008655811,"about_ca_topic_score_gemma":0.00003045501,"teacher_disagreement_score":0.114633456,"about_ca_system_score_codex":0.000021074015,"about_ca_system_score_gemma":0.00004713614,"threshold_uncertainty_score":0.4327848},"labels":[],"label_agreement":null},{"id":"W2163671259","doi":"10.1128/jb.182.5.1340-1345.2000","title":"Characterization of SotA and SotB, Two <i>Erwinia chrysanthemi</i> Proteins Which Modify Isopropyl-β- <scp>d</scp> -Thiogalactopyranoside and Lactose Induction of the <i>Escherichia coli lac</i> Promoter","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Ministère de l'Éducation Nationale; Petroleum Technology Alliance Canada","keywords":"lac operon; Efflux; Biology; Lactose; Escherichia coli; Biochemistry; Mutant; Microbiology; Major facilitator superfamily; Intracellular; Sugar; Gene; Molecular biology","score_opus":0.006963941844632597,"score_gpt":0.21135007449659318,"score_spread":0.2043861326519606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163671259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99829346,0.00024058785,0.000062825304,0.0006881833,0.00025724192,0.00033116026,0.000048148264,0.000004723486,0.000073696974],"genre_scores_gemma":[0.99770117,0.0012610075,0.00041519004,0.00018533842,0.00026812823,0.0000070789074,0.000021902984,0.000025054953,0.00011513429],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985413,0.00018111174,0.00066412304,0.00026243355,0.000116478375,0.00023458657],"domain_scores_gemma":[0.99858344,0.000021820237,0.0007628721,0.00029701687,0.00025997125,0.000074870506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030598856,0.00021751536,0.00045602335,0.000076498596,0.00006519278,0.000019802019,0.00024827415,0.0004808603,0.000018969573],"category_scores_gemma":[0.0001252533,0.0001560543,0.00009417662,0.00016614381,0.0003656653,0.000018654184,0.00014244083,0.00030320146,5.9492805e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018404423,0.00010965959,0.0029371534,0.000052108728,0.00009087733,0.0000011678679,0.00019318356,0.000002280314,0.99314976,0.000016469154,0.00004409595,0.0032191728],"study_design_scores_gemma":[0.0010995833,0.001203797,0.061030608,0.00006419283,0.00006705595,0.00021754998,0.000032669683,0.000019258658,0.925117,0.0001093681,0.01095254,0.00008633284],"about_ca_topic_score_codex":0.000028576833,"about_ca_topic_score_gemma":0.00002552051,"teacher_disagreement_score":0.06803274,"about_ca_system_score_codex":0.000009573846,"about_ca_system_score_gemma":0.00012927465,"threshold_uncertainty_score":0.636371},"labels":[],"label_agreement":null},{"id":"W2163729032","doi":"10.1128/jb.184.1.51-58.2002","title":"Regulation of the<i>nfsA</i>Gene in<i>Escherichia coli</i>by SoxS","year":2002,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Regulon; Operon; Escherichia coli; Biology; Transcription (linguistics); Gene; Paraquat; lac operon; Superoxide; Biochemistry; Molecular biology; Genetics; Enzyme","score_opus":0.007621364221305621,"score_gpt":0.20336141321034884,"score_spread":0.1957400489890432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163729032","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741846,0.0008763401,0.00006471652,0.00089506037,0.00051719043,0.000079804915,0.000012820389,0.0000017493359,0.00013388072],"genre_scores_gemma":[0.99817353,0.00071757514,0.0004916304,0.00024846193,0.00018611165,0.0000016423894,0.0000074356394,0.000012005932,0.00016158115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895936,0.000120762015,0.00052409235,0.00014035948,0.00007680849,0.00017864464],"domain_scores_gemma":[0.99907166,0.00001039375,0.00049534073,0.0002514287,0.00013269763,0.000038480517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019432796,0.000116585186,0.00026618494,0.00005894738,0.000025576508,0.000006211448,0.0003179272,0.00035036882,0.00006367323],"category_scores_gemma":[0.000082332015,0.000085667525,0.00011002332,0.00015576194,0.00016757687,0.0000040610125,0.00009860653,0.00017676642,0.0000021347507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008356443,0.000077673845,0.0038811855,0.000005766801,0.00003102826,0.0000011988169,0.000019577561,0.000013313524,0.992978,0.000022161796,0.0019648217,0.000921733],"study_design_scores_gemma":[0.00070361973,0.00065018825,0.08077975,0.000014701064,0.000016093556,0.00008794808,0.000010751396,0.000018833887,0.8671822,0.00010045575,0.050333902,0.0001015407],"about_ca_topic_score_codex":0.0000071725744,"about_ca_topic_score_gemma":0.000014057449,"teacher_disagreement_score":0.12579577,"about_ca_system_score_codex":0.000014645026,"about_ca_system_score_gemma":0.00003979129,"threshold_uncertainty_score":0.34934205},"labels":[],"label_agreement":null},{"id":"W2164454419","doi":"10.1186/s13100-014-0027-z","title":"Tn5 transposition in Escherichia coli is repressed by Hfq and activated by over-expression of the small non-coding RNA SgrS","year":2014,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Transposition (logic); Escherichia coli; Genetics; Biology; Human genetics; RNA; Expression (computer science); Non-coding RNA; Gene; Philosophy; Computer science; Linguistics","score_opus":0.003557657820379651,"score_gpt":0.19672935690795604,"score_spread":0.1931716990875764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164454419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989615,0.00017382545,0.00024242338,0.00013211774,0.00007072874,0.000244702,0.000061447325,0.000006136598,0.00010710993],"genre_scores_gemma":[0.9992787,0.00023266667,0.00008854381,0.00017614171,0.00002639586,0.00003143605,0.000066147484,0.000013807668,0.00008612668],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992977,0.00005207876,0.00017096504,0.00027567544,0.000054443044,0.00014915488],"domain_scores_gemma":[0.9995696,0.000007927294,0.00009249193,0.00027986354,0.000020365986,0.00002974079],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008947334,0.00011512273,0.0001381615,0.000018276258,0.000042413933,0.0000110783685,0.00015364838,0.000295574,0.000011088323],"category_scores_gemma":[0.000012818085,0.00009053397,0.00004046301,0.00008028993,0.00008138442,0.0000023122054,0.000074394644,0.00009688651,3.1197382e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007314258,0.000057573565,0.00055363384,0.000018668,0.000007871977,1.0062812e-7,0.000044722903,0.0000043135387,0.99694043,0.0000023075065,0.0008937178,0.0014035024],"study_design_scores_gemma":[0.0005949311,0.00021487007,0.0030764076,0.000034758803,0.000008441725,4.8532024e-7,0.000016689313,0.000085108455,0.98696494,0.000017360655,0.008875952,0.000110033834],"about_ca_topic_score_codex":0.000063717176,"about_ca_topic_score_gemma":0.000013125806,"teacher_disagreement_score":0.009975484,"about_ca_system_score_codex":0.000006553502,"about_ca_system_score_gemma":0.0000111116115,"threshold_uncertainty_score":0.36918682},"labels":[],"label_agreement":null},{"id":"W2164673267","doi":"10.1128/jb.186.23.8000-8009.2004","title":"Two Outer Membrane Proteins Are Required for Maximal Type I Secretion of the <i>Caulobacter crescentus</i> S-Layer Protein","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Caulobacter crescentus; Biology; S-layer; Secretion; Bacterial outer membrane; Membrane protein; Cell biology; Bacterial protein; Flagellum; Membrane; Biochemistry; Gene; Escherichia coli","score_opus":0.013598393422524014,"score_gpt":0.24308540991216288,"score_spread":0.22948701648963887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164673267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956268,0.00015682001,0.00079193525,0.0019741205,0.0008046912,0.00056651095,0.00004034634,0.000004576275,0.000034191267],"genre_scores_gemma":[0.99484783,0.00007804426,0.0040153777,0.00028378496,0.0006123181,0.00001444126,0.000021896381,0.00002564427,0.00010067796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987041,0.0000974487,0.0005878052,0.00022397592,0.000107985725,0.00027872922],"domain_scores_gemma":[0.9983328,0.000006692886,0.00082562835,0.0003552016,0.00041792888,0.00006176732],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028442286,0.00018744556,0.00036508814,0.00006563439,0.000059292754,0.000015479627,0.00040613735,0.00039530036,0.000019542656],"category_scores_gemma":[0.00015240215,0.00012614574,0.0002467122,0.00009965752,0.000206968,0.000008276326,0.00015063152,0.00019663027,0.0000020364466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011733284,0.000105547406,0.0005300453,0.00004107884,0.000097413984,0.0000040939894,0.000018708648,0.000024211311,0.9974829,0.000115897055,0.00008488801,0.0003218937],"study_design_scores_gemma":[0.0021982698,0.0020070171,0.005355495,0.000089654015,0.000047655853,0.00022292131,0.000024061459,0.0000020384398,0.9694556,0.000549219,0.019896172,0.00015192186],"about_ca_topic_score_codex":0.0000077210425,"about_ca_topic_score_gemma":0.00003305457,"teacher_disagreement_score":0.02802732,"about_ca_system_score_codex":0.00003107568,"about_ca_system_score_gemma":0.00019683981,"threshold_uncertainty_score":0.51440734},"labels":[],"label_agreement":null},{"id":"W2166340741","doi":"10.1099/mic.0.2006/001917-0","title":"Entry exclusion in F-like plasmids requires intact TraG in the donor that recognizes its cognate TraS in the recipient","year":2007,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Secretion; Plasmid; Periplasmic space; Biology; Cell biology; Cell; DNA; Molecular biology; Genetics; Gene; Biochemistry; Escherichia coli","score_opus":0.01607031393369505,"score_gpt":0.2472180228490908,"score_spread":0.23114770891539577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166340741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955515,0.0011868445,0.000020963564,0.0017877163,0.00047209676,0.00046097022,0.0000339342,0.000007544856,0.00047843147],"genre_scores_gemma":[0.9963133,0.0014586347,0.000097015116,0.0016747095,0.0001224455,0.000029888306,0.00022406131,0.0000147209585,0.00006526012],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99813193,0.00034608718,0.0004282716,0.0004832749,0.000051393054,0.00055901794],"domain_scores_gemma":[0.99938774,0.000091691385,0.00010640652,0.00036619537,0.00002344273,0.00002451855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013531944,0.0002280112,0.00023853722,0.00017141513,0.00005857795,0.000020617392,0.0006543688,0.0006890459,0.00002622537],"category_scores_gemma":[0.00006892706,0.00014281242,0.000075034404,0.00027431926,0.00017690285,0.0000039706483,0.0001854613,0.0003999938,0.000012548977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037132655,0.00017220122,0.004332308,0.000008567345,0.000010414835,0.00003942665,0.00047854727,0.0000035833057,0.98715097,0.00004864807,0.00062143104,0.006762572],"study_design_scores_gemma":[0.0018114551,0.00073032564,0.043613445,0.000047431487,0.000010920297,0.0002699906,0.0010784983,0.0000048738793,0.8061397,0.0001382209,0.14582552,0.00032964742],"about_ca_topic_score_codex":0.00009271506,"about_ca_topic_score_gemma":0.0065117762,"teacher_disagreement_score":0.18101129,"about_ca_system_score_codex":0.000035144745,"about_ca_system_score_gemma":0.00004506646,"threshold_uncertainty_score":0.5823721},"labels":[],"label_agreement":null},{"id":"W2167053457","doi":"10.1128/jb.00207-07","title":"Overproduction of Penicillin-Binding Protein 2 and Its Inactive Variants Causes Morphological Changes and Lysis in<i>Escherichia coli</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Overproduction; Escherichia coli; Biology; Penicillin binding proteins; Lytic cycle; Lysis; Biochemistry; Plasmid; Microbiology; Enterobacteriaceae; Peptidoglycan; Molecular biology; Gene; Genetics","score_opus":0.012766695924171064,"score_gpt":0.24170099060098227,"score_spread":0.2289342946768112,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167053457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860483,0.0006662363,0.000042825133,0.00034347188,0.00017450369,0.00013573555,0.0000098596765,0.0000019529348,0.000020565547],"genre_scores_gemma":[0.9977011,0.0012871188,0.00073329796,0.000051586714,0.00018463159,0.0000022245692,0.0000052477812,0.000008853012,0.000025957675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907905,0.00008408904,0.0003688966,0.00021417926,0.000055997345,0.00019781076],"domain_scores_gemma":[0.99930704,0.000018880894,0.00039999696,0.00009696027,0.00012124241,0.00005587961],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005418911,0.00012658867,0.00033797388,0.00014724642,0.000027893157,0.000007346614,0.00009557322,0.00037027057,0.0000101115265],"category_scores_gemma":[0.00017551664,0.00010420869,0.000035186767,0.000104794715,0.00014670767,0.000006716986,0.00011104792,0.00018438425,2.5988768e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006140787,0.00005836096,0.0029650524,0.000018137845,0.00005454484,0.000025879248,0.000038717364,8.385841e-7,0.9944482,0.000041003208,0.0000043887626,0.0017308313],"study_design_scores_gemma":[0.00062437746,0.0018749649,0.096587464,0.00002633905,0.00002586328,0.00037558938,0.00010999036,0.000003358836,0.89938146,0.000048506183,0.0008305391,0.000111565445],"about_ca_topic_score_codex":0.000013493944,"about_ca_topic_score_gemma":0.000063260406,"teacher_disagreement_score":0.095066726,"about_ca_system_score_codex":0.000016319378,"about_ca_system_score_gemma":0.00004003759,"threshold_uncertainty_score":0.4249507},"labels":[],"label_agreement":null},{"id":"W2167202196","doi":"10.1074/jbc.m113.486613","title":"The UDP-glucose Dehydrogenase of Escherichia coli K-12 Displays Substrate Inhibition by NAD That Is Relieved by Nucleotide Triphosphates","year":2013,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Escherichia coli; Biochemistry; Nucleotide; Enzyme; NAD+ kinase; Allosteric regulation; Dehydrogenase; Mutant; Biology; Chemistry; Gene","score_opus":0.008772201327700915,"score_gpt":0.2060424324944199,"score_spread":0.197270231166719,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167202196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99297714,0.0054189167,0.000038553684,0.0011545549,0.00007688514,0.00013207272,0.000080686674,0.0000069410557,0.000114237635],"genre_scores_gemma":[0.9920452,0.0068780733,0.0002577475,0.00034682933,0.00012809371,0.000009262052,0.000092124414,0.000015667141,0.00022696932],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860746,0.00005428619,0.000597093,0.0002581797,0.0001542909,0.00032870294],"domain_scores_gemma":[0.99869937,0.00003979524,0.000656554,0.00027101513,0.00017792426,0.00015534693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026615898,0.00023486566,0.00030995265,0.000008525319,0.00010382761,0.000049688824,0.00038561245,0.00052879995,0.00012458302],"category_scores_gemma":[0.00012548077,0.00014328524,0.00021565934,0.000080126665,0.00038496987,0.000007853626,0.00011687278,0.00029268305,0.0000042197166],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020007772,0.00014746054,0.00073124334,0.0000150522965,0.000075351345,0.0000035211344,0.0000049691316,8.904348e-7,0.9793268,0.0000026611353,0.018954838,0.00053714163],"study_design_scores_gemma":[0.00064916996,0.0005107062,0.00059310446,0.000023081711,0.000023465882,0.000040173367,0.000075680684,0.000011348736,0.97714365,0.00015077741,0.02059594,0.00018293175],"about_ca_topic_score_codex":0.000014055699,"about_ca_topic_score_gemma":0.000001399418,"teacher_disagreement_score":0.0021831724,"about_ca_system_score_codex":0.00002043628,"about_ca_system_score_gemma":0.000057973764,"threshold_uncertainty_score":0.5843002},"labels":[],"label_agreement":null},{"id":"W2167708455","doi":"10.1093/nar/gkj405","title":"Escherichia coli K-12: a cooperatively developed annotation snapshot--2005","year":2006,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":625,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; National Institute of General Medical Sciences; Directorate for Biological Sciences; Ministry of Education, Culture, Sports, Science and Technology; University of Oxford; Wellcome Trust; Genome Canada; Purdue University; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Biology; Genome; Gene; Annotation; Genetics; Escherichia coli; Snapshot (computer storage); Genome project; Computational biology; Whole genome sequencing; Database","score_opus":0.03155844937682023,"score_gpt":0.3115833578514133,"score_spread":0.28002490847459305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167708455","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98939145,0.00023487034,0.00035988155,0.000969786,0.00012430559,0.0003376285,0.000028828657,0.000025187397,0.008528087],"genre_scores_gemma":[0.9913399,0.00020191433,0.0037655192,0.00014196934,0.00045370584,0.000054502903,0.00038848052,0.000036879755,0.0036170806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980947,0.00019352304,0.00026393952,0.0005007743,0.00031069256,0.00063640217],"domain_scores_gemma":[0.9990898,0.000016833425,0.00004925521,0.00038254136,0.00036901678,0.00009256261],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005967129,0.00017572289,0.00016351913,0.00012730321,0.00026642348,0.00009865184,0.0003828367,0.00045095698,0.000262757],"category_scores_gemma":[0.00013235823,0.00016394771,0.000051763156,0.0003288383,0.00034382613,0.000007055094,0.00028206335,0.00031334726,0.00009718912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013411048,0.00009472748,0.0010538839,0.0000085770625,0.000022481436,0.0000056960585,0.000021725073,0.000010982333,0.97785735,0.00084955146,0.017724553,0.0022163766],"study_design_scores_gemma":[0.00059715414,0.0004050283,0.019915843,0.0000073125534,0.0000042373144,0.0000068367412,0.000060825023,0.00011538739,0.5828648,0.00025340944,0.39554873,0.0002203943],"about_ca_topic_score_codex":0.0001038353,"about_ca_topic_score_gemma":0.00034770017,"teacher_disagreement_score":0.3949925,"about_ca_system_score_codex":0.00004407268,"about_ca_system_score_gemma":0.00028360396,"threshold_uncertainty_score":0.6685594},"labels":[],"label_agreement":null},{"id":"W2167919958","doi":"10.1128/aac.44.7.1983-1985.2000","title":"Role of Putative Loops 2 and 3 in Imipenem Passage through the Specific Porin OprD of <i>Pseudomonas aeruginosa</i>","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Porin; Imipenem; Pseudomonas aeruginosa; Mutant; Biology; Microbiology; Mutation; Loop (graph theory); Genetics; Bacterial outer membrane; Bacteria; Gene; Escherichia coli","score_opus":0.0059940743778905655,"score_gpt":0.21709433850987422,"score_spread":0.21110026413198366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167919958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99778676,0.00048715304,0.000008435375,0.0009458663,0.00002978037,0.00017736109,0.000047957874,0.0000030357762,0.0005136568],"genre_scores_gemma":[0.9817098,0.016849158,0.00042076924,0.00078209705,0.000051400322,0.0000027282754,0.0000295234,0.000014294494,0.00014026566],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926317,0.000031537074,0.00023550069,0.00025174124,0.00005169657,0.00016637977],"domain_scores_gemma":[0.99966985,0.0000064634155,0.00008856815,0.00018911948,0.000025295278,0.000020696902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000070267626,0.00014083568,0.00020459242,0.000020665559,0.000035501555,0.000012060349,0.00014222763,0.0001626874,0.00005374233],"category_scores_gemma":[0.0000018147184,0.00010554299,0.000046385125,0.00008645567,0.0002842947,0.0000041812914,0.000054298944,0.00007113575,7.959311e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022951874,0.00009969526,0.0021272018,0.000012029659,0.000037645714,0.0000011136977,0.00030291642,0.000005129146,0.96094584,0.000052893094,0.0006398824,0.035546135],"study_design_scores_gemma":[0.0009690982,0.0001676365,0.019893985,0.000014890667,0.000006996925,0.000013645548,0.00009488964,0.000004783361,0.9058156,0.0002344791,0.072660126,0.00012387498],"about_ca_topic_score_codex":0.000090171154,"about_ca_topic_score_gemma":0.000020386267,"teacher_disagreement_score":0.07202025,"about_ca_system_score_codex":0.0000027051012,"about_ca_system_score_gemma":0.000013157272,"threshold_uncertainty_score":0.43039182},"labels":[],"label_agreement":null},{"id":"W2168997454","doi":"10.1099/mic.0.057240-0","title":"Ageing in Escherichia coli requires damage by an extrinsic agent","year":2012,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital","funders":"","keywords":"Ageing; Escherichia coli; Biology; Oxidative damage; Bacteria; Oxidative stress; Biochemistry; Genetics; Gene","score_opus":0.010858541126313997,"score_gpt":0.2358577943119038,"score_spread":0.2249992531855898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168997454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99718136,0.0017723384,0.00006318207,0.0001410724,0.0004382637,0.00015832126,0.000044348457,0.000020618687,0.0001805195],"genre_scores_gemma":[0.9972589,0.0002503081,0.0008100455,0.0005808456,0.00024956453,0.00001772084,0.0004306476,0.00002519425,0.00037676835],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866366,0.00014437208,0.0002560962,0.00036051468,0.000021191316,0.00055416767],"domain_scores_gemma":[0.99941856,0.0000059956838,0.00008013325,0.00038294485,0.000022408727,0.00008993502],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002241004,0.000188558,0.00019701396,0.000060078062,0.000050025694,0.00001416687,0.00026987417,0.0005231781,0.00007000555],"category_scores_gemma":[0.00002884071,0.00018079719,0.00004794024,0.000103569895,0.00016100914,0.000005519971,0.00021881137,0.00015002974,0.00003137137],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000460976,0.00016084456,0.0032830683,0.0000052550463,0.000013537282,0.000003879264,0.000030305853,0.0000018899693,0.9926046,0.000048899426,0.0010695889,0.0027320273],"study_design_scores_gemma":[0.0004250885,0.00028850956,0.007728061,0.0000045127317,0.000006377491,0.000018648007,0.000032910433,0.0000023675511,0.836942,0.000013937176,0.15432109,0.00021645425],"about_ca_topic_score_codex":0.00006943662,"about_ca_topic_score_gemma":0.00015498641,"teacher_disagreement_score":0.15566257,"about_ca_system_score_codex":0.000020973326,"about_ca_system_score_gemma":0.000027692311,"threshold_uncertainty_score":0.7372696},"labels":[],"label_agreement":null},{"id":"W2169246184","doi":"10.1046/j.1365-2958.2001.02391.x","title":"Identification of a twin‐arginine leader‐binding protein","year":2001,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":155,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Translocase; Biology; Biochemistry; Periplasmic space; Protein subunit; Fusion protein; Escherichia coli; Arginine; Open reading frame; Peptide sequence; Molecular biology; Amino acid; Gene; Recombinant DNA; Chromosomal translocation","score_opus":0.006782652648534892,"score_gpt":0.22092095188567484,"score_spread":0.21413829923713995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169246184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958119,0.0005237632,0.0025575696,0.00041011572,0.0001560508,0.0002984221,0.000036823083,0.000019158464,0.00018619176],"genre_scores_gemma":[0.9978997,0.000085392705,0.0006621909,0.00010988835,0.000068065274,0.00002700318,0.00027500503,0.000025716336,0.0008470179],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877834,0.00008337812,0.00038041244,0.00041627992,0.000037021888,0.00030453468],"domain_scores_gemma":[0.9992186,0.0000030847348,0.00019125514,0.0004538103,0.00009414292,0.000039147355],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001734553,0.00017226592,0.00021087071,0.000101887934,0.000041547068,0.000009924053,0.00029874014,0.0004308611,0.00003857791],"category_scores_gemma":[0.000058606132,0.00017173954,0.00010569483,0.00016096425,0.00021541637,0.0000018104615,0.00015743487,0.0001051972,0.000032539334],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007046818,0.00006242155,0.00019836871,0.000012502263,0.000054436983,0.0000092206365,0.000009767218,0.000006459108,0.99812406,0.0002544917,0.00014082904,0.0010569443],"study_design_scores_gemma":[0.00041327366,0.00031648533,0.000077501085,0.000009051698,0.000015141207,0.00012858353,0.000020962609,0.000004910136,0.95379657,0.00005268384,0.044990044,0.0001748097],"about_ca_topic_score_codex":0.0000068581944,"about_ca_topic_score_gemma":0.000007595771,"teacher_disagreement_score":0.044849213,"about_ca_system_score_codex":0.000010397384,"about_ca_system_score_gemma":0.00003902428,"threshold_uncertainty_score":0.7003335},"labels":[],"label_agreement":null},{"id":"W2169748477","doi":"10.3389/fmicb.2015.00309","title":"How much territory can a single E. coli cell control?","year":2015,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Concordia University","keywords":"Escherichia coli; FtsZ; Biology; Cytoplasm; Mutant; Cell biology; Ribosome; Cell division; Genetics; Cell; Gene; RNA","score_opus":0.006770812084164147,"score_gpt":0.1791959488747202,"score_spread":0.17242513679055607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169748477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98987347,0.0023450397,0.0023285062,0.001910731,0.0026980422,0.00027690054,0.00013825142,0.000022524515,0.00040650644],"genre_scores_gemma":[0.9926085,0.00008662173,0.0046833176,0.0006811108,0.00032208534,0.000021844597,0.00022488204,0.000026549824,0.0013451206],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987044,0.00013465105,0.00020822517,0.0004606481,0.000031815358,0.0004602668],"domain_scores_gemma":[0.9993702,0.0000040757354,0.00009914746,0.0003568661,0.00006824049,0.000101462436],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001654367,0.00020969086,0.00029895475,0.00011721632,0.00003155078,0.000027592427,0.0003430883,0.0006743309,0.0000030575245],"category_scores_gemma":[0.000048461687,0.00020329907,0.00007145749,0.00008545244,0.00028832429,0.0000022292832,0.00013243954,0.00016788856,0.0000039608876],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013372919,0.00007890487,0.0038158188,0.0000060863713,0.000025835892,0.000010723566,0.000024779141,0.0000033230044,0.9351507,0.000006813035,0.060056932,0.0006863986],"study_design_scores_gemma":[0.0017703092,0.0006509777,0.00014265976,0.0000037776629,0.000011110582,0.000040415845,0.00021573214,0.000009155252,0.566373,0.00014304928,0.4304066,0.0002332439],"about_ca_topic_score_codex":0.00003303188,"about_ca_topic_score_gemma":0.0001939929,"teacher_disagreement_score":0.37034968,"about_ca_system_score_codex":0.00006556581,"about_ca_system_score_gemma":0.00012511696,"threshold_uncertainty_score":0.82902956},"labels":[],"label_agreement":null},{"id":"W2169758149","doi":"10.1128/jb.183.17.4994-5000.2001","title":"Identification and Characterization of <i>fhuD1</i> and <i>fhuD2</i> , Two Genes Involved in Iron-Hydroxamate Uptake in <i>Staphylococcus aureus</i>","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Ferrichrome; Biology; Staphylococcus aureus; Biochemistry; Siderophore; Gene; Escherichia coli; Peptide sequence; Plasmid; Periplasmic space; Bacillus subtilis; Microbiology; Bacteria; Genetics; Bacterial outer membrane","score_opus":0.00728034224056458,"score_gpt":0.2261498981814138,"score_spread":0.2188695559408492,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169758149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980473,0.0010456579,0.000085582134,0.0004216689,0.00023120908,0.00013813899,0.000015100884,0.0000026381504,0.000012724492],"genre_scores_gemma":[0.99041843,0.009044825,0.00017827077,0.0001412148,0.00014075759,0.000004716159,0.000039382143,0.0000144730575,0.000017907414],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986015,0.00011235496,0.000777348,0.00023924008,0.000062721534,0.00020684209],"domain_scores_gemma":[0.9991192,0.0000122491365,0.0005401476,0.00018038905,0.00009239414,0.00005561141],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040267792,0.00015576639,0.0003659692,0.00023166987,0.000020822627,0.000018234112,0.00015603984,0.00028201286,0.0000052646333],"category_scores_gemma":[0.000037126156,0.00014476776,0.000043828248,0.0001534923,0.00017380457,0.000016180953,0.000106272404,0.00015201455,4.316782e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025789163,0.00006496517,0.06856066,0.000023274375,0.000015281616,0.000011925744,0.000042728123,0.000007303162,0.9253809,0.000022188176,0.0000068183563,0.005606098],"study_design_scores_gemma":[0.0018910666,0.00057857664,0.42039835,0.000050989653,0.000020093254,0.00014597375,0.000058093014,0.00005315062,0.5694245,0.00014480081,0.0070448713,0.0001895487],"about_ca_topic_score_codex":0.000019646859,"about_ca_topic_score_gemma":0.00018054154,"teacher_disagreement_score":0.35595638,"about_ca_system_score_codex":0.0000122911315,"about_ca_system_score_gemma":0.00004865103,"threshold_uncertainty_score":0.5903458},"labels":[],"label_agreement":null},{"id":"W2170497025","doi":"10.1111/mmi.12017","title":"Surfing biological surfaces: exploiting the nucleoid for partition and transport in bacteria","year":2012,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Nucleoid; Biology; Partition (number theory); Bacteria; Computational biology; Cell biology; Genetics; Escherichia coli; Gene","score_opus":0.040748243096166155,"score_gpt":0.2721897366220031,"score_spread":0.23144149352583693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170497025","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1401667,0.8582215,0.00011962748,0.000056612862,0.000251803,0.00091491686,0.00023611618,0.000015622367,0.000017154567],"genre_scores_gemma":[0.039188415,0.9570485,0.0007489026,0.000131897,0.00019109382,0.00023099087,0.0023790472,0.00006542431,0.000015738411],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99783385,0.00028561495,0.00057366246,0.0006767383,0.000024106856,0.0006060042],"domain_scores_gemma":[0.99921817,0.000045689474,0.0002412384,0.00040085366,0.000037077923,0.000056951074],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00048023026,0.00044539827,0.0008715527,0.00008207761,0.00008896785,0.000020478232,0.00035180998,0.0013985465,0.0000136470035],"category_scores_gemma":[0.000041651998,0.00030792743,0.00035808232,0.00011503946,0.00029369124,0.000002543958,0.00019073465,0.0002763557,0.0000058257433],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029632069,0.00004536401,0.00004433553,0.00061306305,0.00013293607,0.0000044162225,0.000017952458,9.584245e-7,0.8721874,0.00015271037,0.000019889034,0.1267514],"study_design_scores_gemma":[0.0002575145,0.00020908633,0.000022577975,0.000263541,0.00018138863,0.00015908194,0.000018885,8.6182564e-7,0.01366797,0.000030495383,0.98478925,0.00039934073],"about_ca_topic_score_codex":0.000010471977,"about_ca_topic_score_gemma":0.000035562265,"teacher_disagreement_score":0.98476934,"about_ca_system_score_codex":0.000020805468,"about_ca_system_score_gemma":0.00006268534,"threshold_uncertainty_score":0.9999373},"labels":[],"label_agreement":null},{"id":"W2170620850","doi":"10.1111/j.1462-5822.2005.00675.x","title":"Dynamic life and death interactions between Mycobacterium smegmatis and J774 macrophages","year":2006,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Fundação para a Ciência e a Tecnologia; UNICEF","keywords":"Phagosome; Biology; Cell biology; Mycobacterium smegmatis; Endosome; Internalization; Microbiology; Yersinia; Endocytic cycle; Lysosome; Phagolysosome; Endocytosis; Intracellular; Bacteria; Biochemistry; Cell; Mycobacterium tuberculosis","score_opus":0.004683913742549364,"score_gpt":0.20605315348100978,"score_spread":0.2013692397384604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170620850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99525756,0.0029856788,0.00065819244,0.00041551038,0.000248379,0.00014952593,0.00015096876,0.000024515806,0.00010969908],"genre_scores_gemma":[0.9965637,0.00048001285,0.001201827,0.0001286268,0.00020875923,0.000009210127,0.0008051905,0.000025551764,0.0005771713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890685,0.00006601069,0.00024834555,0.00046068148,0.000017590777,0.0003005491],"domain_scores_gemma":[0.9995264,0.000013380416,0.00009441815,0.00025617934,0.000038384653,0.00007127117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000076055774,0.00021258593,0.0002397775,0.00007089985,0.000106336476,0.000034773097,0.00012804178,0.0003826078,0.000028866198],"category_scores_gemma":[0.000015790534,0.00020176414,0.000047627153,0.000048811602,0.00021522543,0.0000032131616,0.00026898336,0.00013788084,0.000012230873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017628738,0.00001991272,0.006168635,0.000016804866,0.000046613954,0.0000039671145,0.0000058859305,3.855673e-7,0.9924879,0.0000718695,0.0002940234,0.0008663725],"study_design_scores_gemma":[0.0005406252,0.00027440212,0.029293654,0.000008671677,0.000050669623,0.00015418968,0.000016682656,0.000011029078,0.86957544,0.00020568336,0.09954142,0.00032756184],"about_ca_topic_score_codex":0.000048092792,"about_ca_topic_score_gemma":0.00006915101,"teacher_disagreement_score":0.12291249,"about_ca_system_score_codex":0.000009644326,"about_ca_system_score_gemma":0.000026279462,"threshold_uncertainty_score":0.82277024},"labels":[],"label_agreement":null},{"id":"W2170763666","doi":"10.1186/1471-2180-4-13","title":"Expression of a novel gene, gluP, is essential for normal Bacillus subtilis cell division and contributes to glucose export","year":2004,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Regional Cancer Foundation; University of Ottawa","funders":"Universität Konstanz; University of Ottawa","keywords":"Glucokinase; Operon; Biology; PEP group translocation; Bacillus subtilis; Glucose transporter; Permease; L-arabinose operon; Biochemistry; Gene; Snf3; lac operon; gal operon; Gene expression; Cell biology; Genetics; Transporter; Phosphoenolpyruvate carboxykinase; Bacteria; Escherichia coli; Saccharomyces cerevisiae","score_opus":0.007630317779685307,"score_gpt":0.22131393762598334,"score_spread":0.21368361984629802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170763666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95589536,0.0010338599,0.041592665,0.00015058587,0.0002659844,0.0004570655,0.00058063713,0.000009852441,0.000013969198],"genre_scores_gemma":[0.9821059,0.00016965726,0.016805755,0.00027757743,0.00009746353,0.000032600154,0.00040283627,0.000020305026,0.00008787989],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987938,0.000020188103,0.00032660877,0.0004983819,0.000027503987,0.00033353703],"domain_scores_gemma":[0.99933934,0.000014967161,0.00013039948,0.00031750594,0.00012897239,0.00006878751],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012762481,0.0001994715,0.00028382285,0.00007850416,0.00006828134,0.000011296558,0.00021417522,0.0005276679,0.00001009936],"category_scores_gemma":[0.00004682521,0.00017837013,0.00010199509,0.00007089658,0.00016524823,0.000002560019,0.0003576369,0.000058938465,0.0000025456643],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003868074,0.00015500658,0.00052619533,0.000040352577,0.000017301732,4.432222e-7,0.000030683597,0.000017933016,0.9981221,0.000039359653,0.00040896315,0.00025488724],"study_design_scores_gemma":[0.0028110098,0.00083325984,0.000836695,0.00001649349,0.000020859477,0.000023518023,0.000024456096,0.0000039560446,0.9746329,0.000035426758,0.02056498,0.00019640579],"about_ca_topic_score_codex":0.00002215559,"about_ca_topic_score_gemma":0.000052439947,"teacher_disagreement_score":0.026210546,"about_ca_system_score_codex":0.000011312181,"about_ca_system_score_gemma":0.0000938374,"threshold_uncertainty_score":0.7273723},"labels":[],"label_agreement":null},{"id":"W2170907626","doi":"10.1128/aac.00830-10","title":"<i>mexEF-oprN</i> Multidrug Efflux Operon of <i>Pseudomonas aeruginosa</i> : Regulation by the MexT Activator in Response to Nitrosative Stress and Chloramphenicol","year":2010,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research","keywords":"Biology; S-Nitrosoglutathione; Operon; Activator (genetics); Efflux; Microbiology; Pseudomonas fluorescens; Pseudomonas aeruginosa; Mutant; Genetics; Gene; Biochemistry; Bacteria; Enzyme; Glutathione","score_opus":0.0042829098629893125,"score_gpt":0.22481169967310205,"score_spread":0.22052878981011273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170907626","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995822,0.000026835607,0.000041667758,0.0034276748,0.0001112389,0.00043968405,0.0001055233,0.000006173165,0.000019192737],"genre_scores_gemma":[0.99700254,0.00035602142,0.00041754788,0.0019265488,0.00007382363,0.0000126541245,0.000046128298,0.000022426915,0.00014233652],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990943,0.000061692874,0.00021616479,0.00034908,0.00007160368,0.00020717873],"domain_scores_gemma":[0.9995099,0.000019728795,0.00009682179,0.000269607,0.00004527446,0.00005871051],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019252351,0.00018187186,0.0001892968,0.00004047242,0.00007739464,0.00003518077,0.00017893843,0.00025479862,0.000015677346],"category_scores_gemma":[0.000026047715,0.00013894144,0.000036931648,0.000098111974,0.0002139459,0.0000067533024,0.00012232215,0.00013768583,8.5716414e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010265714,0.000104609855,0.0059685567,0.000011725033,0.000023225717,3.253886e-7,0.00024096693,0.0000019827075,0.9843822,0.000007915223,0.0028839037,0.005347996],"study_design_scores_gemma":[0.0013549565,0.00021050464,0.038109954,0.000019062656,0.0000068359195,0.0000063049374,0.000051482493,0.000010592625,0.93163705,0.000011294586,0.02842011,0.00016182936],"about_ca_topic_score_codex":0.00010700387,"about_ca_topic_score_gemma":0.00012055693,"teacher_disagreement_score":0.05274515,"about_ca_system_score_codex":0.000005940127,"about_ca_system_score_gemma":0.000028797405,"threshold_uncertainty_score":0.56658673},"labels":[],"label_agreement":null},{"id":"W2171553529","doi":"10.1099/mic.0.28236-0","title":"Dimerization and DNA binding of the Salmonella enterica PhoP response regulator are phosphorylation independent","year":2005,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Response regulator; Regulator; Salmonella enterica; Phosphorylation; Salmonella; DNA; Chemistry; Microbiology; Cell biology; Biochemistry; Biology; Gene; Genetics; Bacteria; Bacterial protein","score_opus":0.004328037746473412,"score_gpt":0.19366210531590997,"score_spread":0.18933406756943655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171553529","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984042,0.00036847286,0.00007279069,0.00075943884,0.00018259061,0.00014172567,0.00004599586,0.0000073346605,0.000017463726],"genre_scores_gemma":[0.99904215,0.00012245635,0.0002758662,0.00015153605,0.00007261157,0.0000045929537,0.000056558765,0.000011806316,0.00026244821],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992629,0.0001119759,0.0001964975,0.0002514157,0.000025078985,0.0001520989],"domain_scores_gemma":[0.9994943,0.000009083823,0.00017838663,0.00025606877,0.000040090057,0.000022075257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014435324,0.00010942897,0.00012800712,0.000040433235,0.00006248438,0.00000716499,0.00014841028,0.0003088872,0.0000150226015],"category_scores_gemma":[0.000046820584,0.00008426455,0.000044738452,0.00008004193,0.00018281116,0.000001717083,0.00020349876,0.00006729906,0.0000036224992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030795988,0.000025764131,0.0026638121,0.00000425686,0.00002112605,1.9036378e-7,0.00002498119,0.000006431027,0.9955124,0.000012866394,0.00020335258,0.0012168245],"study_design_scores_gemma":[0.00033341983,0.00012186615,0.02654571,0.0000086768905,0.000010479409,0.00003817911,0.000025755753,0.0000088089355,0.9305363,0.0000060155194,0.042273685,0.00009106735],"about_ca_topic_score_codex":0.0000037167724,"about_ca_topic_score_gemma":0.00001945448,"teacher_disagreement_score":0.0649761,"about_ca_system_score_codex":0.000014091192,"about_ca_system_score_gemma":0.000026625472,"threshold_uncertainty_score":0.34362087},"labels":[],"label_agreement":null},{"id":"W2171723963","doi":"10.1016/j.jmb.2011.08.009","title":"The Role of MukE in Assembling a Functional MukBEF Complex","year":2011,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research; Brookhaven National Laboratory; National Institutes of Health","keywords":"Condensin; Biophysics; Scaffold protein; Chemistry; Function (biology); Protein–protein interaction; Biology; Chromosome; Cell biology; Genetics; Chromosome segregation; Gene; Signal transduction","score_opus":0.020018038533554775,"score_gpt":0.2481558390029869,"score_spread":0.22813780046943213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171723963","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99472445,0.0022670534,0.0018318517,0.00013145395,0.0002475977,0.00006495126,0.0000043960813,0.0000017814075,0.00072645163],"genre_scores_gemma":[0.99720913,0.00038821803,0.0021792825,0.00008648034,0.00010400698,0.0000022130064,0.00000860408,0.00001046571,0.000011583848],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900335,0.00011933032,0.00046294776,0.0001384906,0.00007234134,0.00020353937],"domain_scores_gemma":[0.9992148,0.000015813737,0.00034613095,0.00020846623,0.00017353422,0.000041243333],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003980168,0.00010830728,0.00020051631,0.000100694466,0.000034184934,0.000005438045,0.0003157988,0.00026257575,0.000018528834],"category_scores_gemma":[0.00011293636,0.000075670374,0.00013590828,0.000103207174,0.00018693054,0.000001773169,0.000120859775,0.00016398239,0.0000012935853],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024882992,0.00006826612,0.00419179,0.0000020924888,0.000072178045,0.000006453301,0.000016272943,0.0000073084307,0.98618305,0.0023115217,0.000034357505,0.006857909],"study_design_scores_gemma":[0.00057750667,0.0010136532,0.013041215,0.000008045132,0.000016390259,0.00013449913,0.00009993876,0.000017920522,0.95472795,0.0047038943,0.02555971,0.00009927028],"about_ca_topic_score_codex":0.000018302098,"about_ca_topic_score_gemma":0.000034934197,"teacher_disagreement_score":0.031455066,"about_ca_system_score_codex":0.00000871827,"about_ca_system_score_gemma":0.0000894139,"threshold_uncertainty_score":0.30857486},"labels":[],"label_agreement":null},{"id":"W2171780940","doi":"10.1146/annurev.biochem.76.010307.145803","title":"Lipid A Modification Systems in Gram-Negative Bacteria","year":2007,"lang":"en","type":"review","venue":"Annual Review of Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1324,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Lipid A; Bacterial outer membrane; Inner membrane; Lipopolysaccharide; Biochemistry; Lipid II; Gram-negative bacteria; Lipid bilayer; Escherichia coli; Chemistry; Periplasmic space; Cell envelope; Enzyme; Bacteria; Membrane fluidity; Biology; Membrane; Biosynthesis; Gene","score_opus":0.025594047189103523,"score_gpt":0.3344980685156246,"score_spread":0.30890402132652106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171780940","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00029502608,0.9973956,0.000013377177,0.000024502438,0.00029611212,0.00091600366,0.0005973319,0.000012344577,0.000449712],"genre_scores_gemma":[0.0002141595,0.9966628,0.00023490925,0.00006400669,0.00044992144,0.00014264311,0.0018842403,0.000055901965,0.00029143709],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971339,0.00013736736,0.001382825,0.00076372037,0.00019343874,0.00038876574],"domain_scores_gemma":[0.9976896,0.000034342418,0.0009468061,0.0009833024,0.00024573985,0.00010017755],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00064652937,0.0005401586,0.0017227577,0.00011549245,0.000023754721,0.000015687316,0.00066535664,0.0013470941,0.0000180663],"category_scores_gemma":[0.00036552022,0.00046695015,0.00047843225,0.0004350577,0.00018898085,0.0000031237887,0.00025402426,0.00035027298,0.000016850548],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000195475,0.00014463767,0.0000010658941,0.2013067,0.00015717123,0.000005919797,0.000007486822,9.077983e-8,0.023301277,0.000024774534,0.0022106806,0.77282065],"study_design_scores_gemma":[0.00013081646,0.00011535048,0.000001695226,0.059351068,0.00018214228,0.00005406568,0.00002053684,2.6378092e-7,0.016251966,0.000002427543,0.9234675,0.00042217554],"about_ca_topic_score_codex":0.000030345114,"about_ca_topic_score_gemma":0.0000030122899,"teacher_disagreement_score":0.9212568,"about_ca_system_score_codex":0.000060495397,"about_ca_system_score_gemma":0.00037855297,"threshold_uncertainty_score":0.9999494},"labels":[],"label_agreement":null},{"id":"W2172627878","doi":"10.1111/1348-0421.12330","title":"Characterization of inner membrane protein YciB in <i>Escherichia coli</i>: YciB interacts with cell elongation and division proteins","year":2015,"lang":"en","type":"article","venue":"Microbiology and Immunology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministère de l'Éducation, du Loisir et du Sport Québec","keywords":"Biology; Cell division; Transmembrane protein; Escherichia coli; Cell biology; Cell envelope; Membrane protein; Mutant; Cell; Cell membrane; Elongation; Vesicle-associated membrane protein 8; Inner membrane; Bacterial outer membrane; Biochemistry; Membrane; Gene; Receptor","score_opus":0.004728269447015741,"score_gpt":0.18327129101985148,"score_spread":0.17854302157283575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172627878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99828106,0.0005175693,0.00022918476,0.00031831907,0.00008874312,0.00048250833,0.0000246449,0.000008867806,0.00004912647],"genre_scores_gemma":[0.9984208,0.00022573599,0.0006651857,0.00010253619,0.000025362251,0.000039465936,0.00038213193,0.000015069387,0.00012372743],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989914,0.00014604277,0.00026650378,0.0003546619,0.000021175225,0.00022025246],"domain_scores_gemma":[0.999501,0.0000058084343,0.00017025418,0.00019647594,0.000092300405,0.000034186756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017448561,0.00017320595,0.00025641648,0.00010108616,0.000035427223,0.000009269257,0.000110246954,0.00050411327,0.000004829611],"category_scores_gemma":[0.0000311156,0.00014299089,0.000016057384,0.000109987275,0.0003582345,0.000009080359,0.00017519217,0.000166697,0.0000018382289],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005911519,0.00009680235,0.0015589738,0.00002715194,0.000027768067,0.0000019439426,0.00011786182,0.0000010476592,0.99666566,0.0000481989,0.0000047374974,0.00085871987],"study_design_scores_gemma":[0.001561923,0.0017966715,0.009786238,0.00003197419,0.000008680828,0.000037000973,0.000057172427,0.000006330241,0.9824149,0.000024163515,0.0041085654,0.00016639079],"about_ca_topic_score_codex":0.000037055637,"about_ca_topic_score_gemma":0.00008754055,"teacher_disagreement_score":0.0142507525,"about_ca_system_score_codex":0.000008877967,"about_ca_system_score_gemma":0.00006304102,"threshold_uncertainty_score":0.5830999},"labels":[],"label_agreement":null},{"id":"W2178120917","doi":"10.1371/journal.pcbi.1004562","title":"A Kinetic Platform to Determine the Fate of Hydrogen Peroxide in Escherichia coli","year":2015,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Keio University; Princeton University","keywords":"Escherichia coli; Hydrogen peroxide; Bacteria; Detoxification (alternative medicine); Chemistry; Biomolecule; Biophysics; Biochemistry; Biology","score_opus":0.028942792571910052,"score_gpt":0.25176139994939384,"score_spread":0.2228186073774838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2178120917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99806273,0.00016831781,0.0004998818,0.0007478099,0.00008332768,0.0002308336,0.000029595436,0.00000778991,0.00016971171],"genre_scores_gemma":[0.9955699,0.000013282076,0.0036274062,0.0005104641,0.00008726617,0.000028985663,0.00012335042,0.000011024902,0.000028312545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917316,0.000051873918,0.00026505446,0.00024258814,0.00007004511,0.00019726681],"domain_scores_gemma":[0.9995326,0.000029624134,0.000079183,0.00018217748,0.00011120744,0.000065254535],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013549176,0.00011836326,0.00017074653,0.00006840522,0.000021194157,0.0000055229243,0.00026379956,0.000181653,0.00000776035],"category_scores_gemma":[0.000119437995,0.000088738314,0.00003908025,0.0001557588,0.00013173983,0.0000014034458,0.00019834936,0.00007576638,0.000013911517],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012490354,0.000070050926,0.0017658934,0.0000045763604,0.000033455886,0.0000012731549,0.000059345304,0.0026468618,0.9935788,0.00054300606,0.00009701734,0.0010748314],"study_design_scores_gemma":[0.0014019208,0.0019926792,0.013113761,0.00001587022,0.000021580683,0.000024343206,0.00008567687,0.0039418214,0.9594323,0.005928941,0.013722162,0.00031893465],"about_ca_topic_score_codex":0.000037320093,"about_ca_topic_score_gemma":0.0000735355,"teacher_disagreement_score":0.034146477,"about_ca_system_score_codex":0.000013746284,"about_ca_system_score_gemma":0.00009489313,"threshold_uncertainty_score":0.36186433},"labels":[],"label_agreement":null},{"id":"W2179099740","doi":"10.1371/journal.pone.0143557","title":"OmpW of Caulobacter crescentus Functions as an Outer Membrane Channel for Cations","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; European Commission; European Federation of Pharmaceutical Industries and Associations","keywords":"Caulobacter crescentus; Bacterial outer membrane; Biology; Porin; Lipid bilayer; Membrane; Cell biology; Bacteria; Biophysics; Biochemistry; Gene; Genetics; Escherichia coli; Bacterial protein","score_opus":0.04927896294624171,"score_gpt":0.24756106220358545,"score_spread":0.19828209925734375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2179099740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99771523,0.00011720887,0.00042566686,0.00073868205,0.0001419928,0.00029940845,0.0001592307,0.000016701002,0.00038588725],"genre_scores_gemma":[0.9953201,0.00006494537,0.0019639325,0.00015701762,0.00034356932,0.00006321871,0.0005357845,0.000019481831,0.0015319547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993294,0.000019355257,0.00016282473,0.00023041657,0.00008506428,0.00017295497],"domain_scores_gemma":[0.99920475,0.0000037549535,0.00006580287,0.00035582174,0.00026853423,0.00010135543],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000793952,0.000098741875,0.00014255595,0.00004349591,0.000039007722,0.000011513374,0.00014191885,0.00021425734,0.000018345545],"category_scores_gemma":[0.00007313347,0.000095108495,0.000047264457,0.000056771332,0.00006356246,0.0000032730397,0.00006150543,0.000047004647,0.000014958286],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011660921,0.0007548792,0.00015099987,0.000023704524,0.00012393591,2.6283305e-7,0.000038279508,0.000003843481,0.997963,0.000084141735,0.000535222,0.0002051236],"study_design_scores_gemma":[0.000658961,0.0011107452,0.00032814706,0.000012216755,0.000093993214,0.0000035207877,0.00007047041,0.00007118498,0.98688465,0.00018827913,0.010441499,0.00013635664],"about_ca_topic_score_codex":0.00003835377,"about_ca_topic_score_gemma":0.00009356997,"teacher_disagreement_score":0.011078373,"about_ca_system_score_codex":0.000008406491,"about_ca_system_score_gemma":0.00007514888,"threshold_uncertainty_score":0.3878412},"labels":[],"label_agreement":null},{"id":"W2191906954","doi":"10.1016/j.semcdb.2015.10.033","title":"The mysterious nature of bacterial surface (gliding) motility: A focal adhesion-based mechanism in Myxococcus xanthus","year":2015,"lang":"en","type":"review","venue":"Seminars in Cell and Developmental Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Research Council; Canadian Institutes of Health Research","keywords":"Myxococcus xanthus; Biology; Gliding motility; Motility; Mechanism (biology); Adhesion; Cell biology; Bacteria; Microbiology; Genetics; Gene","score_opus":0.013580717987136719,"score_gpt":0.26991556861965477,"score_spread":0.25633485063251804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2191906954","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.234966,0.7635065,0.0000036424333,0.000020056399,0.00068324956,0.0005665344,0.00013117232,0.0000070318565,0.00011583898],"genre_scores_gemma":[0.05183572,0.94607854,0.0011902099,0.00003323911,0.00007392247,0.00004960374,0.0006047847,0.000035822417,0.000098144126],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976205,0.00029600004,0.0007921296,0.0007208851,0.000092282215,0.00047818452],"domain_scores_gemma":[0.9991328,0.00010834291,0.0003030817,0.00032478588,0.00004934628,0.000081656086],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00069232495,0.0004719314,0.0010625228,0.0001269775,0.0000641864,0.000020825395,0.00048272614,0.002254223,0.000009359559],"category_scores_gemma":[0.000093198025,0.00033165788,0.00013441083,0.00021594454,0.00033719445,0.000002053164,0.00055839244,0.0005193809,0.0000038540816],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045418632,0.0002581538,0.00038308548,0.0023844193,0.00010273897,0.0000488038,0.00014720556,7.009987e-7,0.24759868,0.00007484295,0.00043352004,0.7481137],"study_design_scores_gemma":[0.00089896674,0.000726837,0.000018926627,0.0011606469,0.000046450376,0.00006417642,0.00017640622,0.000006227937,0.06092064,0.00019235275,0.9352771,0.0005112433],"about_ca_topic_score_codex":0.000024952767,"about_ca_topic_score_gemma":0.00018667582,"teacher_disagreement_score":0.9348436,"about_ca_system_score_codex":0.00009355577,"about_ca_system_score_gemma":0.000754184,"threshold_uncertainty_score":0.9999136},"labels":[],"label_agreement":null},{"id":"W2196102194","doi":"10.1074/jbc.m115.690396","title":"Binding of the Covalent Flavin Assembly Factor to the Flavoprotein Subunit of Complex II","year":2015,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"National Institute of General Medical Sciences; National Eye Institute; National Institutes of Health; U.S. Department of Veterans Affairs","keywords":"Flavoprotein; Flavin group; Biochemistry; Oxidoreductase; Fumarate reductase; Respiratory chain; Cofactor; Flavin adenine dinucleotide; Protein subunit; Reductase; Escherichia coli; Covalent bond; Biology; Stereochemistry; Chemistry; Succinate dehydrogenase; Enzyme; Gene","score_opus":0.056537334966705766,"score_gpt":0.2742942611566698,"score_spread":0.21775692618996406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2196102194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979863,0.00025642576,0.00006783629,0.0011977976,0.00016150484,0.00011366777,0.00005745731,0.0000023415027,0.0001566552],"genre_scores_gemma":[0.998975,0.00006372564,0.000429973,0.00009560159,0.00026599708,0.000002054053,0.000008607152,0.0000068895824,0.00015214687],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893695,0.000068988644,0.00048321867,0.0001453821,0.0001871404,0.00017830459],"domain_scores_gemma":[0.9987722,0.000017464985,0.00049738126,0.00032938647,0.0002838848,0.00009969694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039024767,0.00013490107,0.00027087258,0.000017499915,0.00005314829,0.000007999393,0.00074405235,0.0003196564,0.000032033044],"category_scores_gemma":[0.00042343346,0.000065923814,0.00019351399,0.00013911769,0.00020731475,0.0000016018793,0.0004606692,0.00020931604,0.000001101196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018182334,0.00008095309,0.0009126405,0.000012595295,0.000047279824,0.0000013494622,0.000020778674,0.00001977556,0.9972008,0.0000060330326,0.00068786705,0.0008280942],"study_design_scores_gemma":[0.00033243996,0.0010040395,0.003209646,0.000024240397,0.000013694278,0.000062536885,0.000093811104,0.000003917904,0.9717586,0.000031026815,0.023379521,0.00008652143],"about_ca_topic_score_codex":0.0000053902395,"about_ca_topic_score_gemma":0.0000023248094,"teacher_disagreement_score":0.025442205,"about_ca_system_score_codex":0.000018630419,"about_ca_system_score_gemma":0.000113271104,"threshold_uncertainty_score":0.26882952},"labels":[],"label_agreement":null},{"id":"W2197988467","doi":"10.1007/978-3-540-74921-9_11","title":"The Role of RpoS in Bacterial Adaptation","year":2007,"lang":"en","type":"book-chapter","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"rpoS; Regulon; Sigma factor; Biology; Adaptation (eye); Gene; Genetics; RNA polymerase; Mutant; Gene expression; Computational biology; Microbiology; Promoter; RNA","score_opus":0.0108685938330418,"score_gpt":0.2150851285284124,"score_spread":0.2042165346953706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2197988467","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06767231,0.0039169365,0.0001646718,0.00016744541,0.00096920074,0.000668344,0.000079742815,0.000018762961,0.9263426],"genre_scores_gemma":[0.70197487,0.007330193,0.0015839806,0.00011381678,0.0013786305,0.000016786275,0.0007334463,0.000117981086,0.2867503],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.999226,0.0000086223545,0.00030857202,0.00022152053,0.00008014608,0.00015513643],"domain_scores_gemma":[0.9994405,0.00000962847,0.00015175327,0.00031337072,0.00006192573,0.000022851262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014628019,0.00015695336,0.00015609256,0.00005565535,0.000025306019,0.000010255287,0.00020683827,0.00076883397,0.00007248891],"category_scores_gemma":[0.000014698708,0.000116347226,0.000078361016,0.000014343712,0.0001309893,5.1537876e-7,0.00011563005,0.00012308505,0.000008417452],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020465213,0.000011794172,0.000010686794,0.000005301882,0.00004097895,0.0000010566033,0.00000842486,0.0000016198942,0.85987216,0.03644231,0.00012726086,0.10327376],"study_design_scores_gemma":[0.00017741554,0.00020711274,0.000045667515,0.000011349185,0.000008932741,0.0000031271525,0.000017997536,0.000008191908,0.25737032,0.0032597508,0.7387583,0.00013178849],"about_ca_topic_score_codex":0.000028644587,"about_ca_topic_score_gemma":0.0010583953,"teacher_disagreement_score":0.73863107,"about_ca_system_score_codex":0.0000089223795,"about_ca_system_score_gemma":0.00006549383,"threshold_uncertainty_score":0.59299517},"labels":[],"label_agreement":null},{"id":"W2199957041","doi":"10.1099/mic.0.000223","title":"The atypical two-subunit σ factor from Bacillus subtilis is regulated by an integral membrane protein and acid stress","year":2015,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"","keywords":"Bacillus subtilis; Sigma factor; Transcription factor; Biology; Transcription (linguistics); Protein subunit; Cell biology; Response regulator; Cytoplasm; RNA polymerase; Biochemistry; Gene; RNA; Genetics; Bacteria; Mutant","score_opus":0.010756282386868564,"score_gpt":0.22095335655784643,"score_spread":0.21019707417097785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2199957041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956188,0.0016762676,0.0000518927,0.0009171563,0.00022431683,0.00025795816,0.0011944922,0.000026713145,0.000032355],"genre_scores_gemma":[0.99688643,0.00013416,0.000329097,0.0002802536,0.00016722264,0.000017011274,0.0017119211,0.000024507202,0.00044940942],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862534,0.00018094259,0.00024470998,0.0005271441,0.000038604263,0.00038327608],"domain_scores_gemma":[0.99914813,0.000010443827,0.00008988669,0.0005069515,0.000099630444,0.00014495423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116337775,0.00024184861,0.00022723337,0.000024847106,0.00011293523,0.000050428112,0.0003940553,0.0006246789,0.00004969125],"category_scores_gemma":[0.000049345304,0.00016775611,0.000044481767,0.00006127671,0.0005247171,0.0000039143642,0.00028617494,0.00020989013,0.000015276735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043528472,0.000043689437,0.0003115213,0.000002214821,0.0000621547,0.0000018006361,0.000055053955,2.1879404e-7,0.99259776,0.000020313488,0.0017765766,0.004693399],"study_design_scores_gemma":[0.0008225362,0.00058675854,0.0002611096,0.000004400056,0.00001140827,0.0000254382,0.00008074195,0.000014619694,0.84603274,0.000080369085,0.1518828,0.00019708586],"about_ca_topic_score_codex":0.00022304164,"about_ca_topic_score_gemma":0.0006043613,"teacher_disagreement_score":0.15010622,"about_ca_system_score_codex":0.000015327385,"about_ca_system_score_gemma":0.000060802027,"threshold_uncertainty_score":0.68408954},"labels":[],"label_agreement":null},{"id":"W2207210368","doi":"10.1371/journal.pcbi.1004651","title":"Operational Principles for the Dynamics of the In Vitro ParA-ParB System","year":2015,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cooperativity; DNA; Biophysics; In vitro; Physics; Nanotechnology; Chemistry; Biology; Materials science; Biochemistry","score_opus":0.03165462316723397,"score_gpt":0.25544081903300386,"score_spread":0.2237861958657699,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2207210368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98260945,0.0003062753,0.012919179,0.002913116,0.00032889194,0.00047389377,0.00034356266,0.000007922486,0.00009773474],"genre_scores_gemma":[0.9957739,0.000006823427,0.0033879455,0.00014790734,0.00012272074,0.000059428123,0.00045181334,0.0000072914418,0.000042170366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993325,0.000067618246,0.00023483392,0.0001777426,0.00006302362,0.00012430323],"domain_scores_gemma":[0.99947935,0.00006933299,0.000098440134,0.00016683734,0.00016576414,0.00002030062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017973663,0.0000834276,0.00011580129,0.000024855066,0.000052065687,0.000007072549,0.0002818293,0.00016197872,0.0000010419086],"category_scores_gemma":[0.00011378142,0.000049879993,0.000052055842,0.000071484224,0.00017022311,0.0000011149846,0.00014263076,0.000057787343,7.9261696e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045771807,0.00015266128,0.006685811,0.000037585356,0.0001596117,3.338193e-7,0.00004398183,0.024913324,0.84902215,0.11700486,0.00019232242,0.0013296452],"study_design_scores_gemma":[0.0026954054,0.00074727397,0.019214377,0.000029449267,0.000059591013,0.00005059189,0.00031970543,0.46816146,0.4806498,0.005711286,0.021969927,0.00039110234],"about_ca_topic_score_codex":0.000012077002,"about_ca_topic_score_gemma":0.000049064747,"teacher_disagreement_score":0.44324815,"about_ca_system_score_codex":0.000027609593,"about_ca_system_score_gemma":0.00016304755,"threshold_uncertainty_score":0.20340471},"labels":[],"label_agreement":null},{"id":"W2208243331","doi":"10.1128/jb.00638-15","title":"A λ Cro-Like Repressor Is Essential for the Induction of Conjugative Transfer of SXT/R391 Elements in Response to DNA Damage","year":2015,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Biology; Repressor; SOS response; Genetics; Vibrio cholerae; Gene; Population; Activator (genetics); Homologous recombination; Transcription factor; DNA repair; Bacteria","score_opus":0.019901111185831138,"score_gpt":0.28427515958315525,"score_spread":0.2643740483973241,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2208243331","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961907,0.0001253078,0.0012559291,0.001567748,0.0005280434,0.00026190677,0.000059557467,0.0000010337792,0.000009766737],"genre_scores_gemma":[0.9984217,0.00008369882,0.0010790284,0.0001854139,0.00015531428,0.000009664214,0.000006968068,0.000010879483,0.000047320806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987765,0.00016705609,0.00064502313,0.00016359366,0.00008338325,0.00016447045],"domain_scores_gemma":[0.99898845,0.000049067025,0.000308717,0.00023333365,0.00036491352,0.00005549828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009145952,0.00010992635,0.00032204695,0.00012859462,0.00001798266,0.000006470038,0.00027090558,0.00026993733,0.000019095352],"category_scores_gemma":[0.00028109038,0.000079572965,0.00011315442,0.00010182448,0.00017345471,0.0000062904955,0.000077699995,0.00011949153,4.096286e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008742575,0.00008353387,0.00052051555,0.000010315462,0.000115328825,0.000001837743,0.00037315435,0.000016062892,0.988627,0.000020155905,0.0005066783,0.0009828097],"study_design_scores_gemma":[0.0021013778,0.0038199031,0.022664366,0.000022602093,0.000042411157,0.00003994923,0.00036228076,0.000009569141,0.9530245,0.000111307054,0.017714309,0.00008739618],"about_ca_topic_score_codex":0.00001724468,"about_ca_topic_score_gemma":0.00002724204,"teacher_disagreement_score":0.035602503,"about_ca_system_score_codex":0.00001616275,"about_ca_system_score_gemma":0.00016366539,"threshold_uncertainty_score":0.32448915},"labels":[],"label_agreement":null},{"id":"W2213029072","doi":"10.1146/annurev-micro-102215-095301","title":"Xenogeneic Silencing and Its Impact on Bacterial Genomes","year":2016,"lang":"en","type":"review","venue":"Annual Review of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Gene silencing; Biology; Horizontal gene transfer; Nucleoid; Gene; Genome; Nucleoprotein; Adaptation (eye); Argonaute; Genetics; Computational biology; Cell biology; RNA interference; RNA; Escherichia coli","score_opus":0.011311628185135347,"score_gpt":0.30565592588707685,"score_spread":0.2943442977019415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2213029072","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0025702857,0.9933902,0.0000013868946,0.000054863296,0.00039324467,0.00076286646,0.0027401128,0.000009898128,0.00007713019],"genre_scores_gemma":[0.00021602098,0.9976886,0.000042309133,0.0002045157,0.0005186938,0.00003932063,0.0010741367,0.000059671216,0.00015671317],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975671,0.0003243806,0.0008533199,0.0007596173,0.000044582564,0.00045101022],"domain_scores_gemma":[0.9984566,0.000054293345,0.00066739914,0.0005829396,0.00014421002,0.000094539806],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032709056,0.0006215149,0.0020938525,0.00012871153,0.00004275224,0.000006979607,0.000503361,0.0010879667,0.00017801717],"category_scores_gemma":[0.00014230049,0.00036992005,0.0006335023,0.000110070294,0.0001822782,0.000002465087,0.00044343655,0.00019887449,0.00008196056],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027309976,0.000029265888,2.6088696e-7,0.019290874,0.0002936426,0.0000028469929,0.0000029709079,7.5247035e-9,0.33144632,0.000025708467,0.0018514723,0.64702934],"study_design_scores_gemma":[0.00016830754,0.0011186255,9.55339e-7,0.027171846,0.0002448154,0.00026561602,0.000001393689,6.7911885e-9,0.021307478,0.0000032602866,0.9493258,0.00039191646],"about_ca_topic_score_codex":0.0000021392939,"about_ca_topic_score_gemma":0.0000014896433,"teacher_disagreement_score":0.9474743,"about_ca_system_score_codex":0.000031263713,"about_ca_system_score_gemma":0.0002494635,"threshold_uncertainty_score":0.99987525},"labels":[],"label_agreement":null},{"id":"W2220338742","doi":"10.1007/0-387-30871-7_5","title":"Membrane Protein Insertion in Bacteria from a Structural Perspective","year":2007,"lang":"en","type":"book-chapter","venue":"Molecular biology intelligence unit","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Membrane protein; Transmembrane protein; Peripheral membrane protein; Membrane; Lipid bilayer; Protein targeting; Membrane transport protein; Transport protein; Cell biology; Integral membrane protein; Biophysics; Membrane transport; Chemistry; Biology; Biochemistry","score_opus":0.019821765482819397,"score_gpt":0.28337798112426127,"score_spread":0.2635562156414419,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2220338742","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94330186,0.0033447288,0.006925114,0.0004391257,0.0008257597,0.001542143,0.00048904575,0.000076752076,0.043055497],"genre_scores_gemma":[0.9708084,0.0009237256,0.004885047,0.0006488026,0.0005760958,0.000054440206,0.0032302502,0.00018905662,0.018684197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99747646,0.000087103734,0.00062789745,0.0011412208,0.00013056332,0.0005367693],"domain_scores_gemma":[0.9985119,0.000014577084,0.00029391042,0.00080547977,0.00026035996,0.00011375537],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00019163305,0.0006404604,0.0005425271,0.00036202653,0.000060567218,0.000030398376,0.00065987103,0.0025913098,0.00049073837],"category_scores_gemma":[0.00010487943,0.0006382788,0.0002158788,0.00009573164,0.0005270477,0.000003469572,0.0003736027,0.00072210137,0.000085440224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027700452,0.000020277641,0.000046103352,0.000010107575,0.00015791722,0.000064397034,0.000030252708,0.0000069608873,0.9453333,0.04914813,0.0000067207066,0.004898804],"study_design_scores_gemma":[0.0002634381,0.0007543414,0.00013618394,0.00010194933,0.000045097036,0.000027291291,0.000054692173,0.000017309707,0.92272073,0.042481218,0.03258462,0.00081312464],"about_ca_topic_score_codex":0.00040982923,"about_ca_topic_score_gemma":0.00091777334,"teacher_disagreement_score":0.0325779,"about_ca_system_score_codex":0.00009060066,"about_ca_system_score_gemma":0.00016212594,"threshold_uncertainty_score":0.99960685},"labels":[],"label_agreement":null},{"id":"W2225599927","doi":"10.1021/acschembio.5b01039","title":"A Bacterial Cell Shape-Determining Inhibitor","year":2016,"lang":"en","type":"article","venue":"ACS Chemical Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Division of Graduate Education; Institute of Infection and Immunity; Canadian Institutes of Health Research; National Cancer Institute; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; U.S. Public Health Service; U.S. Department of Defense","keywords":"Computational biology; Cell; Chemistry; Biology; Cell biology; Biochemistry","score_opus":0.007798599820258995,"score_gpt":0.22114138131434824,"score_spread":0.21334278149408925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2225599927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980275,0.000111541565,0.000105152816,0.0005307282,0.000522252,0.00010589861,0.00005825467,0.00003921297,0.00049944007],"genre_scores_gemma":[0.9972257,0.00016681408,0.0007268381,0.00031408182,0.001177427,0.000023401532,0.000117513446,0.000027448576,0.00022080209],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986307,0.00004426026,0.00027497773,0.0005590965,0.00004616182,0.00044478005],"domain_scores_gemma":[0.99932957,0.000027281727,0.000094885996,0.0003936112,0.00005091275,0.00010372255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009087069,0.00021642905,0.00021931129,0.00003810191,0.00003777167,0.000012621657,0.00035306325,0.00076236087,0.00015648498],"category_scores_gemma":[0.00012707603,0.00014705415,0.00009029525,0.000059455244,0.00028593818,0.0000025224483,0.00040595638,0.000090882226,0.0000878289],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000120359204,0.000040967432,0.00069480937,0.000004091914,0.000016369913,0.0000017972665,0.0000034118898,7.84014e-9,0.97143847,0.00006122165,0.0008407859,0.026777683],"study_design_scores_gemma":[0.0008619526,0.00037275744,0.00011341238,0.000006909339,0.00000845486,0.000016420581,0.0000032043122,7.6599235e-7,0.8761451,0.00017148681,0.12207282,0.00022670154],"about_ca_topic_score_codex":0.0000021149403,"about_ca_topic_score_gemma":0.0000017174702,"teacher_disagreement_score":0.12123203,"about_ca_system_score_codex":0.000014100362,"about_ca_system_score_gemma":0.000048883696,"threshold_uncertainty_score":0.5996694},"labels":[],"label_agreement":null},{"id":"W2258533277","doi":"10.1017/s1431927602102534","title":"Electron Crystallography of the E. coli Outer Membrane Protein Wza<sub>K30</sub>","year":2002,"lang":"en","type":"article","venue":"Microscopy and Microanalysis","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Crystallography; Materials science; Electron; Bacterial outer membrane; Chemistry; Physics; Escherichia coli; Biochemistry; Gene; Quantum mechanics","score_opus":0.004473575123687004,"score_gpt":0.199056449228205,"score_spread":0.194582874104518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2258533277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961736,0.0028113644,0.00012373023,0.0004356855,0.000058929534,0.0002385671,0.00004333457,0.000008974156,0.00010580236],"genre_scores_gemma":[0.99752176,0.0013400051,0.0003686052,0.00021058475,0.000061017992,0.000017533888,0.000027696664,0.000019233135,0.0004335723],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988667,0.00006691862,0.00028612712,0.00039726507,0.000080862366,0.0003021445],"domain_scores_gemma":[0.99923104,0.0000036807353,0.00015883576,0.00048672105,0.00007061352,0.000049133636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011091698,0.00020333205,0.0002649241,0.00009504304,0.00012313463,0.000030511985,0.00027479744,0.00030175847,0.000027985172],"category_scores_gemma":[0.000014893446,0.00015337534,0.00024236183,0.0003154436,0.00031221795,0.00000287468,0.00018280164,0.00012899301,0.0000029667553],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004020172,0.000075589174,0.00042789037,0.000025238323,0.00021328751,8.3795976e-7,0.000024945968,0.0000014972161,0.99780905,0.000016568327,0.0005550546,0.0008098406],"study_design_scores_gemma":[0.0003475959,0.00017596359,0.0004143675,0.000013956207,0.00014325518,0.000012373652,0.000013544794,0.00000936714,0.9812993,0.000037008995,0.017353036,0.00018022452],"about_ca_topic_score_codex":0.00002458065,"about_ca_topic_score_gemma":0.00009232023,"teacher_disagreement_score":0.01679798,"about_ca_system_score_codex":0.0000071936824,"about_ca_system_score_gemma":0.000016876487,"threshold_uncertainty_score":0.6254465},"labels":[],"label_agreement":null},{"id":"W2261684418","doi":"10.1002/1873-3468.12066","title":"HDX‐MS and deletion analysis of the type 4 secretion system protein TraF from the <i>Escherichia coli</i> F plasmid","year":2016,"lang":"en","type":"article","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada); York University","funders":"Natural Sciences and Engineering Research Council of Canada; York University; Cummings Foundation","keywords":"Plasmid; Pilus; Mutant; Secretion; Thioredoxin; Escherichia coli; Chemistry; Bacterial conjugation; Function (biology); Biology; Genetics; Cell biology; DNA; Gene; Biochemistry","score_opus":0.004953004122492501,"score_gpt":0.1813041992633421,"score_spread":0.1763511951408496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2261684418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930741,0.00011613845,0.00075178157,0.005603981,0.0001487602,0.00020203489,0.00007153405,0.00000904431,0.000022630502],"genre_scores_gemma":[0.99884266,0.000043935474,0.00012964828,0.0007788761,0.00011262136,0.0000129064065,0.000038158218,0.000008807039,0.000032394513],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99934614,0.00008909213,0.0001504836,0.0002136719,0.00008152918,0.00011906765],"domain_scores_gemma":[0.99948883,0.000012807447,0.00011284956,0.00033131574,0.000034049863,0.000020168853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000103970546,0.000096418764,0.00012593354,0.000021543296,0.000059304544,0.000013180047,0.00018658968,0.00015547364,0.000008485861],"category_scores_gemma":[0.00002420399,0.000047857808,0.00007735248,0.00018886277,0.00014513006,0.0000017743872,0.00007997995,0.000051621613,0.0000017954085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000062971965,0.00000649796,0.0022311937,0.000005196097,0.00019862602,2.2174966e-7,0.000015410087,0.000006885508,0.9965059,0.00005767796,0.0004360532,0.00047332697],"study_design_scores_gemma":[0.00033930238,0.00012388847,0.047569077,0.00003766903,0.0002689466,0.000001324846,0.000032407253,0.00009692088,0.9349848,0.0000088731285,0.016410425,0.00012638196],"about_ca_topic_score_codex":0.00008992686,"about_ca_topic_score_gemma":0.00011265567,"teacher_disagreement_score":0.061521154,"about_ca_system_score_codex":0.000011417794,"about_ca_system_score_gemma":0.000015983736,"threshold_uncertainty_score":0.19515847},"labels":[],"label_agreement":null},{"id":"W2262559214","doi":"10.12688/f1000research.8007.2","title":"Alanylated lipoteichoic acid primer in Bacillus subtilis","year":2016,"lang":"en","type":"preprint","venue":"F1000Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Saskatchewan Health Research Foundation; University of Saskatchewan","keywords":"Lipoteichoic acid; Bacillus subtilis; Teichoic acid; Glycolipid; Biochemistry; Biology; Biosynthesis; Bacteria; Cell wall; Staphylococcus aureus; Peptidoglycan; Enzyme","score_opus":0.020979412630622335,"score_gpt":0.2960499229756195,"score_spread":0.2750705103449972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2262559214","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902123,0.0034685282,0.0001402962,0.0017444463,0.0006690824,0.00078334834,0.00025056474,0.000050051047,0.0026813566],"genre_scores_gemma":[0.9914819,0.0028329212,0.00034003868,0.000091117705,0.00068931706,0.00013553539,0.000557102,0.00008763924,0.003784419],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99709177,0.00022921509,0.0004358174,0.0010670493,0.0003508664,0.0008252832],"domain_scores_gemma":[0.9981524,0.000018205761,0.00010870453,0.00133876,0.00021508106,0.00016689015],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005731003,0.00037923048,0.00039012826,0.00032732286,0.000055368993,0.00007075987,0.0011118831,0.0018614333,0.00029274035],"category_scores_gemma":[0.00024491994,0.0003162125,0.00015978693,0.0002021083,0.0003119038,0.0000021282035,0.0030869273,0.0008669539,0.0001694024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019396671,0.000080742364,0.0023960725,0.00005776297,0.00007551968,0.000025347894,0.000014218627,0.000005015413,0.97992855,0.000038950322,0.0033397581,0.013844069],"study_design_scores_gemma":[0.0008003176,0.00030936225,0.008593463,0.00010251665,0.0000107992655,0.000012124922,0.000008792784,0.000035504774,0.8537986,0.0010391343,0.13480191,0.00048747894],"about_ca_topic_score_codex":0.0001578939,"about_ca_topic_score_gemma":0.00022447528,"teacher_disagreement_score":0.13146214,"about_ca_system_score_codex":0.00007223142,"about_ca_system_score_gemma":0.00046375606,"threshold_uncertainty_score":0.999929},"labels":[],"label_agreement":null},{"id":"W2264029443","doi":"10.1016/j.bbamem.2016.01.025","title":"Identification of protein–protein interactions between the TatB and TatC subunits of the twin-arginine translocase system and respiratory enzyme specific chaperones","year":2016,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Biomembranes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Twin-arginine translocation pathway; Translocase; Biochemistry; Biology; Chaperone (clinical); Thylakoid; Transmembrane protein; Transport protein; Transmembrane domain; Membrane transport protein; Membrane protein; Cell biology; Membrane; Chromosomal translocation; Chloroplast","score_opus":0.013111015962533588,"score_gpt":0.22875667034773012,"score_spread":0.21564565438519653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2264029443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99562097,0.00050843006,0.000052344105,0.0026014745,0.000120594006,0.0006974324,0.00036385606,0.000018923874,0.000016001848],"genre_scores_gemma":[0.9993052,0.00023615774,0.000036003214,0.000029449953,0.0001878904,0.00005244568,0.000022574148,0.000028664765,0.00010164847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847615,0.00019334948,0.0005163833,0.00044474078,0.00015487673,0.00021452048],"domain_scores_gemma":[0.99868846,0.00004152736,0.00042395145,0.0006633321,0.00012453311,0.000058198788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026549282,0.00024773317,0.0002887132,0.000102027116,0.0001375,0.0000331776,0.0003900373,0.00021474072,0.0000038061905],"category_scores_gemma":[0.000034805493,0.00013723817,0.00010483795,0.00026808743,0.000971942,0.00001498723,0.00018876205,0.00010400659,0.0000016845635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000116502226,0.000055127886,0.000019565587,0.0001367863,0.000086061824,3.2052134e-7,0.00008552768,8.182799e-8,0.99739623,0.0003036101,0.000024905625,0.0017752615],"study_design_scores_gemma":[0.0005011323,0.00027438038,0.00766051,0.00014226453,0.000053522002,0.000009467417,0.000113928625,0.0000030742242,0.9882511,0.000046100362,0.0027614096,0.00018313779],"about_ca_topic_score_codex":0.000019274845,"about_ca_topic_score_gemma":0.000009793419,"teacher_disagreement_score":0.009145176,"about_ca_system_score_codex":0.0000094161305,"about_ca_system_score_gemma":0.000051479274,"threshold_uncertainty_score":0.559641},"labels":[],"label_agreement":null},{"id":"W2277830567","doi":"","title":"Molecular and Genetic Strategies to Enhance Functional Expression of Recombinant Protein in Escherichia coli","year":2009,"lang":"en","type":"dissertation","venue":"UWSpace (University of Waterloo)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Escherichia coli; Recombinant DNA; Computational biology; Biology; Protein expression; Genetics; Microbiology; Chemistry; Gene","score_opus":0.004362743972646964,"score_gpt":0.1957730578157508,"score_spread":0.19141031384310384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2277830567","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989955,0.00029121895,0.000046038716,0.00016803521,0.0000999389,0.0003313938,0.000009766,0.0000051494917,0.00005295125],"genre_scores_gemma":[0.98465097,0.0002300797,0.0036299683,0.000009094312,0.000014303449,0.0000017059161,0.00019472538,0.000013647643,0.011255529],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99921054,0.00003980987,0.00013458493,0.0003556922,0.00009856105,0.00016082631],"domain_scores_gemma":[0.9994807,0.000001839235,0.00015830137,0.00021873435,0.00009262539,0.000047789417],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000045769284,0.00016752377,0.00025459938,0.00012921389,0.00003325181,0.000008151797,0.00017274666,0.00046708703,0.000013152909],"category_scores_gemma":[0.0000077739,0.0001904034,0.000055783727,0.00010401746,0.00006057005,0.000004356475,0.000074334326,0.00011305272,0.0000012682093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000414857,0.00006240222,0.000042791715,0.00010102076,0.000016698492,0.000008899232,0.0007898947,0.000039882467,0.9964948,0.000025904994,0.00007506552,0.0019277541],"study_design_scores_gemma":[0.00028718615,0.00061402185,0.014180915,0.00016035428,0.00001953304,0.0000010504783,0.0047932244,0.000005351746,0.97922295,0.00013268196,0.0003837023,0.00019904584],"about_ca_topic_score_codex":0.0014900283,"about_ca_topic_score_gemma":0.008018327,"teacher_disagreement_score":0.017271897,"about_ca_system_score_codex":0.0000106905945,"about_ca_system_score_gemma":0.00009516671,"threshold_uncertainty_score":0.7764425},"labels":[],"label_agreement":null},{"id":"W2277896810","doi":"10.1021/acs.biochem.5b00274","title":"YehZYXW of <i>Escherichia coli</i> Is a Low-Affinity, Non-Osmoregulatory Betaine-Specific ABC Transporter","year":2015,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Betaine; Osmolyte; Biochemistry; Periplasmic space; ATP-binding cassette transporter; Chemistry; Escherichia coli; Osmotic concentration; Proline; Biology; Transporter; Amino acid","score_opus":0.011492216074581165,"score_gpt":0.2155250685870254,"score_spread":0.2040328525124442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2277896810","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961465,0.0012032308,0.00014032057,0.00024638535,0.00024269313,0.00015708162,0.00013690222,0.000024430085,0.0017024569],"genre_scores_gemma":[0.997013,0.00024227882,0.001076727,0.0003675499,0.00043486303,0.000017456669,0.000233226,0.00004230901,0.0005725977],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984672,0.00001765465,0.00040775337,0.0005434142,0.00020783678,0.00035616275],"domain_scores_gemma":[0.99863416,0.0000039781335,0.00017324403,0.00077961193,0.00019941865,0.00020959546],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00016941548,0.00029115425,0.00030916955,0.000036829915,0.000042874304,0.000018005772,0.0004551889,0.00069118995,0.00005682094],"category_scores_gemma":[0.00001803012,0.00029334283,0.00017876946,0.00016302569,0.00034569422,0.0000029988166,0.000145094,0.00015992689,0.000015237746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016029779,0.00015120879,0.00076959335,0.000068541645,0.000059511596,0.0000051950196,0.00004372268,0.0000022279462,0.9820921,0.000007979233,0.015991747,0.0006479037],"study_design_scores_gemma":[0.0009282937,0.0002307988,0.0012494422,0.000025656711,0.000024942328,0.00001020491,0.000069437774,0.000008636179,0.95171845,0.00004715161,0.04535871,0.0003283021],"about_ca_topic_score_codex":0.000010412692,"about_ca_topic_score_gemma":0.0000025423906,"teacher_disagreement_score":0.030373648,"about_ca_system_score_codex":0.000020677235,"about_ca_system_score_gemma":0.00022585494,"threshold_uncertainty_score":0.9999519},"labels":[],"label_agreement":null},{"id":"W2280213236","doi":"10.71781/3819","title":"Étude du rôle spécifique du système à deux composantes PhoBR et du système Pst (phosphate specific transport) dans la virulence d’une souche pathogène aviaire de Escherichia coli (APEC)","year":2009,"lang":"fr","type":"dissertation","venue":"Open MIND","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Molecular biology; Biology","score_opus":0.009536790408390276,"score_gpt":0.23746446911761906,"score_spread":0.22792767870922878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2280213236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9857113,0.0037889879,0.0012234311,0.0020148796,0.000941457,0.0015828932,0.00086913223,0.000016266884,0.0038516964],"genre_scores_gemma":[0.9701763,0.015639724,0.0063143806,0.00018021766,0.0006167722,0.00013187235,0.0059321467,0.00015917212,0.0008494295],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99517614,0.00048716788,0.0012321674,0.0017345847,0.0003234748,0.0010464704],"domain_scores_gemma":[0.99735147,0.00006336851,0.0008516733,0.0010161222,0.0003570211,0.0003603499],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0009316721,0.0011608768,0.0012372459,0.00011355889,0.0004557732,0.00039398842,0.002004669,0.0026707137,0.00037534276],"category_scores_gemma":[0.000066452594,0.0012227648,0.00042820914,0.00044056406,0.0006321447,0.0000344424,0.00028912767,0.0008095992,0.00011292099],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00094593345,0.00086510886,0.0038499425,0.0002297399,0.00029188962,0.0005894149,0.002081683,0.00011290397,0.97989005,0.0009457141,0.0001969229,0.010000696],"study_design_scores_gemma":[0.002148536,0.0010650121,0.057360116,0.0010213648,0.0004189212,0.00037680723,0.0032338307,0.00026651888,0.83712566,0.00019645928,0.09503616,0.0017506185],"about_ca_topic_score_codex":0.0018836675,"about_ca_topic_score_gemma":0.012939374,"teacher_disagreement_score":0.14276439,"about_ca_system_score_codex":0.0002226007,"about_ca_system_score_gemma":0.0010697889,"threshold_uncertainty_score":0.99902225},"labels":[],"label_agreement":null},{"id":"W2287479920","doi":"10.1016/j.chembiol.2015.12.011","title":"Cold Stress Makes Escherichia coli Susceptible to Glycopeptide Antibiotics by Altering Outer Membrane Integrity","year":2016,"lang":"en","type":"article","venue":"Cell chemical biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Glycopeptide; Escherichia coli; Membrane integrity; Microbiology; Antibiotics; Bacterial outer membrane; Chemistry; Biology; Membrane; Biochemistry; Gene","score_opus":0.00861254476253095,"score_gpt":0.22880121201838707,"score_spread":0.22018866725585612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2287479920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99593043,0.00021604163,0.0012500946,0.0010574331,0.0003768807,0.00024124303,0.00030801454,0.000046366655,0.00057348184],"genre_scores_gemma":[0.99449223,0.00034183927,0.0028741828,0.0007763042,0.00034698253,0.0000075695775,0.00016163298,0.000039339946,0.0009598977],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981676,0.00005909678,0.00033950782,0.0007496674,0.00006840037,0.00061577826],"domain_scores_gemma":[0.9990337,0.000028826515,0.00009556967,0.000533223,0.00008937135,0.00021933792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117367876,0.0003135867,0.00033469257,0.000044521956,0.000049591687,0.000024531286,0.0005288369,0.00084783835,0.00009958835],"category_scores_gemma":[0.00008895781,0.00022963967,0.00010378084,0.000115385345,0.00029184925,0.0000032344255,0.00050956715,0.00019793781,0.00009254179],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013454304,0.0001109036,0.0012415762,0.00002389766,0.000031652125,0.0000026999794,0.000006216852,3.2400493e-7,0.9926887,0.00009017762,0.004591167,0.0010781548],"study_design_scores_gemma":[0.00057197054,0.00053728337,0.000028898727,0.000019247507,0.000012891653,0.0000039959464,0.000010915837,0.000002001104,0.8795457,0.000031695,0.11890183,0.0003335645],"about_ca_topic_score_codex":0.000028386852,"about_ca_topic_score_gemma":0.000019260677,"teacher_disagreement_score":0.11431066,"about_ca_system_score_codex":0.000031558502,"about_ca_system_score_gemma":0.00004634451,"threshold_uncertainty_score":0.93644345},"labels":[],"label_agreement":null},{"id":"W2288794268","doi":"10.1016/j.bpj.2015.11.428","title":"Quantitative Localization Microscopy Combined with DNA smFISH Reveals New Features of the Organization of High-Copy Number Plasmids in Bacteria","year":2016,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Plasmid; Nucleoid; Biology; Bacteria; DNA; Fluorescence microscope; Replicon; Molecular biology; Genetics; Gene; Escherichia coli; Fluorescence","score_opus":0.004834919356133568,"score_gpt":0.228598579025024,"score_spread":0.22376365966889045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2288794268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99638754,0.0000060510165,0.0027868883,0.0005325185,0.00015602881,0.00009261682,0.000022574619,0.000002655637,0.000013096251],"genre_scores_gemma":[0.9982045,0.00007489129,0.0014370081,0.000049009876,0.0001020005,7.2915674e-7,0.000013436416,0.000015082768,0.00010333592],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993173,0.00007034461,0.00023978742,0.0001442939,0.00010272188,0.00012558259],"domain_scores_gemma":[0.99935305,0.000011938359,0.00025168914,0.00016774965,0.00017678969,0.000038783786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000058098463,0.0001069898,0.00018014546,0.000026328764,0.000032271128,0.000012487759,0.00019366536,0.00016534788,0.000027901275],"category_scores_gemma":[0.00006888814,0.00005693836,0.000037416125,0.000223238,0.00017548946,0.0000055687533,0.00006801948,0.00007125132,0.0000019975678],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003835723,0.00008288027,0.012518775,0.000007944582,0.00003217686,5.4350147e-7,0.000019693749,0.0000048449797,0.985217,0.0008956945,0.00051309215,0.0003238145],"study_design_scores_gemma":[0.00096257485,0.0006136847,0.08157212,0.00008159039,0.000014035106,0.000014904985,0.0000108819,0.000001139185,0.9162283,0.0002979391,0.000122315,0.00008053615],"about_ca_topic_score_codex":0.000018207233,"about_ca_topic_score_gemma":0.000018645052,"teacher_disagreement_score":0.06905335,"about_ca_system_score_codex":0.0000139115255,"about_ca_system_score_gemma":0.00010010492,"threshold_uncertainty_score":0.23218788},"labels":[],"label_agreement":null},{"id":"W2289285011","doi":"10.1099/00221287-147-8-2103","title":"The pdx genetic marker adjacent to the chloramphenicol biosynthesis gene cluster in Streptomyces venezuelae ISP5230: functional characterization The GenBank accession number for the sequence reported in this paper is AF286159.","year":2001,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta; Eli Lilly and Company","keywords":"Biology; Genetics; Shuttle vector; Plasmid; Gene; Expression vector; Streptomyces coelicolor; Cloning vector; Molecular biology; Gene cluster; Complementation; Mutant; Molecular cloning; Peptide sequence; Recombinant DNA; Vector (molecular biology)","score_opus":0.016048386388469962,"score_gpt":0.25059397187412785,"score_spread":0.2345455854856579,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2289285011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9726166,0.0007168998,0.00048816236,0.024050029,0.000701919,0.0012561077,0.0001186011,0.000011205196,0.000040450366],"genre_scores_gemma":[0.9899679,0.0026583637,0.00015575525,0.005208035,0.0003951028,0.00045232978,0.0002801281,0.000032002936,0.00085040025],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99802136,0.00025444213,0.0005393577,0.00059552264,0.00006834205,0.0005209694],"domain_scores_gemma":[0.9986146,0.00015001744,0.00022656115,0.00084734673,0.00012514964,0.000036324975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067565707,0.000265486,0.00020040745,0.00004254527,0.0003841816,0.00008455842,0.00071791676,0.00044703507,0.00031899128],"category_scores_gemma":[0.00015782849,0.00012703131,0.000122014564,0.00029770276,0.0002808009,0.0000075177004,0.00038144705,0.0002120622,0.000033689852],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047631626,0.000044701526,0.007501991,0.0000041503713,0.000068026384,0.0000025430093,0.000073928946,0.000054743316,0.97494113,0.00001177695,0.0024723453,0.014348371],"study_design_scores_gemma":[0.0005364978,0.000113611764,0.10350624,0.000016328791,0.000036532056,0.00016071276,0.00007519937,0.00022148922,0.26781467,0.00004938452,0.62723184,0.00023752869],"about_ca_topic_score_codex":0.000098703444,"about_ca_topic_score_gemma":0.0012317871,"teacher_disagreement_score":0.70712644,"about_ca_system_score_codex":0.00005734871,"about_ca_system_score_gemma":0.00011356054,"threshold_uncertainty_score":0.5180186},"labels":[],"label_agreement":null},{"id":"W2289731940","doi":"10.14288/1.0101782","title":"Cell division in a temperature-sensitive mutant of Escherichia coli","year":2011,"lang":"en","type":"article","venue":"cIRcle (University of British Columbia)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Escherichia coli; Mutant; Cell division; Division (mathematics); Escherichia coli Proteins; Cell biology; Chemistry; Biology; Genetics; Cell; Gene; Mathematics","score_opus":0.005703418674863464,"score_gpt":0.15729929708335735,"score_spread":0.1515958784084939,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2289731940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986299,0.000114884904,0.000046336707,0.000008922756,0.00006301909,0.00013441037,0.00009522136,0.0000064461037,0.00090085814],"genre_scores_gemma":[0.9987724,0.00024446138,0.00078730984,0.000017625767,0.000010840095,2.1746719e-7,0.000024644774,0.0000085364845,0.0001339548],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99936837,0.000037928978,0.000109063185,0.00026590796,0.00006763121,0.00015112685],"domain_scores_gemma":[0.99954474,0.0000033165943,0.00009936503,0.00020646193,0.00010351559,0.000042594842],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008353849,0.000040031828,0.00017958597,0.000029584324,0.000035660414,0.000007741194,0.0001856845,0.00026798004,0.0000238015],"category_scores_gemma":[0.00001139247,0.00011913141,0.000069177455,0.00014538098,0.00020893212,0.000004286549,0.00017058157,0.000085743886,0.000002067929],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040881907,0.00017071363,0.003841926,0.000024259329,0.000015545447,0.00003916904,0.000090152804,8.029939e-7,0.98242927,9.3705177e-7,0.00014245573,0.013203892],"study_design_scores_gemma":[0.0007979818,0.00041781834,0.90968317,0.000044569508,0.000012865176,0.000008375853,0.00055648707,0.000010502663,0.08810657,0.000045052566,0.00017525704,0.00014137207],"about_ca_topic_score_codex":0.0155349,"about_ca_topic_score_gemma":0.040778354,"teacher_disagreement_score":0.90584123,"about_ca_system_score_codex":0.000008888914,"about_ca_system_score_gemma":0.00005148156,"threshold_uncertainty_score":0.99102074},"labels":[],"label_agreement":null},{"id":"W2291885911","doi":"10.1091/mbc.e15-08-0573","title":"A robust platform for chemical genomics in bacterial systems","year":2016,"lang":"en","type":"article","venue":"Molecular Biology of the Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Drug discovery; Chemical genetics; Computational biology; Genomics; Gene; Genetics; Small molecule; Genome; Bioinformatics","score_opus":0.010362949808544733,"score_gpt":0.205325049308426,"score_spread":0.19496209949988125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2291885911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99378556,0.00037488923,0.0043447423,0.00031246932,0.00057056005,0.00039667083,0.00009952766,0.000005432728,0.00011012692],"genre_scores_gemma":[0.99827605,0.000075945536,0.0012245383,0.000058511156,0.00013039992,0.00003959299,0.000043286484,0.000020779746,0.00013091364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904567,0.000042390362,0.0002793587,0.00031719022,0.00003513033,0.0002802705],"domain_scores_gemma":[0.99933,0.000015246458,0.00013679829,0.0004394971,0.000046464193,0.000032028896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015868862,0.00014770555,0.00020673909,0.00003784748,0.00002211851,0.00000537735,0.00045499817,0.00050426816,0.0000050126387],"category_scores_gemma":[0.00006184807,0.00008945806,0.00013422576,0.00005399221,0.00022551352,0.0000010898407,0.00025655574,0.00005521155,0.000002017198],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016189799,0.000041017996,0.00022532918,0.00001686416,0.00002116745,3.9779994e-7,0.000004649086,0.000014557267,0.998276,0.00042861345,0.00011663586,0.00069286244],"study_design_scores_gemma":[0.0011212273,0.00022372391,0.000062763764,0.000013002162,0.000011966148,0.0000071363215,0.0000069592725,0.000016044789,0.9772265,0.00035686707,0.020818241,0.00013555346],"about_ca_topic_score_codex":0.000011918728,"about_ca_topic_score_gemma":0.000009046462,"teacher_disagreement_score":0.021049494,"about_ca_system_score_codex":0.000022049318,"about_ca_system_score_gemma":0.00006481927,"threshold_uncertainty_score":0.3889378},"labels":[],"label_agreement":null},{"id":"W2292016599","doi":"10.14288/1.0088172","title":"Molecular studies of the structure and function of pseudomonas aeruginosa OprD: an imipenem specific porin","year":2009,"lang":"en","type":"article","venue":"cIRcle (University of British Columbia)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Porin; Pseudomonas aeruginosa; Imipenem; Microbiology; Function (biology); Biology; Computational biology; Chemistry; Genetics; Bacteria; Bacterial outer membrane; Gene; Escherichia coli","score_opus":0.0067929402553551415,"score_gpt":0.18059495395160866,"score_spread":0.1738020136962535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2292016599","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981996,0.0013193792,0.000053232507,0.00008175713,0.00009519598,0.000119485856,0.00008854862,0.0000046871974,0.000038120303],"genre_scores_gemma":[0.99868494,0.00087943056,0.00033684095,0.00002462318,0.000022408141,5.1284758e-8,0.000017074928,0.0000046492373,0.000029997846],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994325,0.000035827943,0.000103620085,0.0002361089,0.00008822181,0.000103745246],"domain_scores_gemma":[0.9994037,0.0000026313535,0.00013440395,0.00028494286,0.0001437814,0.000030552183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005657933,0.00004244748,0.00017922664,0.000018374561,0.000062914776,0.000009186688,0.00020072928,0.00016915014,0.0000071735],"category_scores_gemma":[0.000009413155,0.00009308114,0.00006417525,0.000102782564,0.00034148153,0.0000060805105,0.00012463095,0.000059499605,8.4309335e-8],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027124532,0.000039575036,0.0013687923,0.000019719537,0.000041484767,0.0000036815898,0.000025130672,0.000006512868,0.8499617,0.000009210112,0.00012644375,0.14837062],"study_design_scores_gemma":[0.0005522813,0.0006050765,0.9295234,0.00003337129,0.00004227749,0.000028041522,0.0005398647,0.0000037032978,0.067563936,0.00059504993,0.00040360037,0.000109416724],"about_ca_topic_score_codex":0.0007932505,"about_ca_topic_score_gemma":0.005509727,"teacher_disagreement_score":0.9281546,"about_ca_system_score_codex":0.0000059347567,"about_ca_system_score_gemma":0.000023182438,"threshold_uncertainty_score":0.37957385},"labels":[],"label_agreement":null},{"id":"W2297442822","doi":"10.1128/jb.00839-15","title":"The SOS Response Master Regulator LexA Regulates the Gene Transfer Agent of Rhodobacter capsulatus and Represses Transcription of the Signal Transduction Protein CckA","year":2016,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Repressor lexA; Biology; Mutant; Rhodobacter; Genetics; Gene; Plasmid; Reporter gene; Homologous recombination; Repressor; Transcription factor; Gene expression","score_opus":0.011022019700460699,"score_gpt":0.20478662313419946,"score_spread":0.19376460343373875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2297442822","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924612,0.00097028405,0.000418294,0.0054749106,0.0003523279,0.00028680777,0.000030232364,0.0000023047726,0.000003647681],"genre_scores_gemma":[0.99865866,0.0007566455,0.00013079046,0.00004522084,0.00019977997,0.000007962227,0.0000017688035,0.000016193542,0.00018296548],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982122,0.00058267487,0.00067232805,0.00019968851,0.00012514189,0.00020794965],"domain_scores_gemma":[0.9989068,0.00006037286,0.00036446826,0.00041717498,0.00021011427,0.000041103583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008540535,0.00016384304,0.00028104812,0.00004631972,0.000103351995,0.000014313565,0.00035302027,0.0003207851,0.000030099565],"category_scores_gemma":[0.00007698819,0.000067577545,0.00021369055,0.00007051207,0.00078361144,0.000010295106,0.00004996133,0.00014568234,2.569773e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037597357,0.000036387064,0.00033682535,0.000014835858,0.00016616458,9.836817e-7,0.000103302475,0.0000042754664,0.9898203,0.000047990437,0.000038677663,0.0056705177],"study_design_scores_gemma":[0.0008056248,0.001069736,0.066097215,0.000053976106,0.000067673674,0.00023184344,0.000043121927,0.0000015499236,0.9215631,0.00020941017,0.009771758,0.00008501858],"about_ca_topic_score_codex":0.000006188069,"about_ca_topic_score_gemma":0.000016160093,"teacher_disagreement_score":0.06825723,"about_ca_system_score_codex":0.0000130843655,"about_ca_system_score_gemma":0.00009616011,"threshold_uncertainty_score":0.2887249},"labels":[],"label_agreement":null},{"id":"W2297849299","doi":"10.1007/978-3-319-23603-2_3","title":"Biology and Assembly of the Bacterial Envelope","year":2015,"lang":"en","type":"review","venue":"Advances in experimental medicine and biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Firmicutes; Cell envelope; Bacillus subtilis; Biology; Envelope (radar); Proteobacteria; Computational biology; Microbiology; Escherichia coli; Bacteria; Genetics; Computer science; Gene; 16S ribosomal RNA","score_opus":0.03706113443327395,"score_gpt":0.3846553461767468,"score_spread":0.3475942117434728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2297849299","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.017282408,0.98096645,0.0000032097873,0.000072366194,0.00095156487,0.00034819727,0.00003731929,0.000003977196,0.00033450406],"genre_scores_gemma":[0.017629797,0.98147625,0.00014143104,0.00007089449,0.00042314714,0.00004323893,0.0001736627,0.000017946742,0.000023616909],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985461,0.0001993583,0.0004908617,0.0004889096,0.00003651635,0.0002382514],"domain_scores_gemma":[0.9993068,0.000032272095,0.00027895192,0.0002972223,0.000028417633,0.000056362256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020372335,0.00031174612,0.0009936017,0.00008983079,0.000031979656,0.0000030169097,0.00029142894,0.0006956732,0.000010574953],"category_scores_gemma":[0.00008378577,0.00017462908,0.000066475324,0.00012140095,0.0011847954,0.0000033300419,0.0005374136,0.00017156795,5.513013e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055258548,0.000049797043,0.00017137303,0.00046442,0.000053981257,9.610553e-7,0.000043151875,1.828388e-8,0.21022189,0.0009686125,0.00010119008,0.78786933],"study_design_scores_gemma":[0.00053978077,0.0012400111,0.000009880831,0.00048243388,0.00004616854,0.00006194174,0.00007597878,1.4982822e-7,0.010272494,0.00017704583,0.9869024,0.00019167928],"about_ca_topic_score_codex":0.000025225065,"about_ca_topic_score_gemma":0.000028595421,"teacher_disagreement_score":0.98680127,"about_ca_system_score_codex":0.000014587415,"about_ca_system_score_gemma":0.000084890366,"threshold_uncertainty_score":0.7121167},"labels":[],"label_agreement":null},{"id":"W2299428477","doi":"10.1007/s10482-016-0675-8","title":"Swarming motility is modulated by expression of the putative xenosiderophore transporter SppR-SppABCD in Pseudomonas aeruginosa PA14","year":2016,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Swarming motility; Operon; Periplasmic space; Pyoverdine; Sigma factor; Siderophore; Pseudomonas aeruginosa; ATP-binding cassette transporter; Biology; Biofilm; Swarming (honey bee); Rhamnolipid; Microbiology; Bacterial outer membrane; Motility; Plasmid; Bacteria; Transporter; Gene; Biochemistry; Gene expression; Cell biology; Escherichia coli; Genetics; Promoter","score_opus":0.0060560855523709945,"score_gpt":0.21472087640908596,"score_spread":0.20866479085671497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2299428477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971128,0.00037862445,0.000578559,0.0011747603,0.0001514512,0.00026400405,0.00022109093,0.000013020677,0.00010570096],"genre_scores_gemma":[0.9987677,0.0003901875,0.000241272,0.00024565833,0.00004335387,0.000013056867,0.00003998939,0.000025797612,0.0002329823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99846894,0.000094538984,0.00040642646,0.00052606256,0.00015013784,0.0003539058],"domain_scores_gemma":[0.999112,0.000016999496,0.00018158561,0.0005517365,0.000076501354,0.00006116634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001443651,0.0002381332,0.0002625517,0.000049550425,0.000060068498,0.000009344191,0.00036266443,0.0003720403,0.00007162446],"category_scores_gemma":[0.000033752673,0.00014374053,0.00013853995,0.00016484645,0.00029763806,0.000007417674,0.0001014814,0.0001233144,0.000005284993],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008113814,0.00009670032,0.008177101,0.000014312132,0.000023071914,0.0000032382695,0.00017296616,0.0000038144524,0.9846768,0.000005107479,0.0005454189,0.006200348],"study_design_scores_gemma":[0.00086094666,0.0001669949,0.021537919,0.00006449368,0.00001357017,0.000005606622,0.000059443293,0.000011352802,0.9730883,0.00030850986,0.003700294,0.0001825398],"about_ca_topic_score_codex":0.000052869953,"about_ca_topic_score_gemma":0.00003394907,"teacher_disagreement_score":0.013360817,"about_ca_system_score_codex":0.000018075496,"about_ca_system_score_gemma":0.00005673821,"threshold_uncertainty_score":0.58615685},"labels":[],"label_agreement":null},{"id":"W2312257181","doi":"10.1139/w2012-102","title":"Changes in peptidoglycan structure and metabolism during differentiation of<i>Proteus mirabilis</i>into swarmer cells","year":2012,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Peptidoglycan; Proteus mirabilis; Autolysin; Cell wall; Acetylation; Biochemistry; Microbiology; Biology; Bacteria; Bacterial cell structure; Chemistry; Staphylococcus aureus; Genetics; Gene","score_opus":0.003910434843772987,"score_gpt":0.18042956411526187,"score_spread":0.17651912927148888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2312257181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99574345,0.003321427,0.000008806948,0.00025414428,0.0005157145,0.00008784827,0.000061628576,6.503749e-7,0.0000063309276],"genre_scores_gemma":[0.99879795,0.00026747154,0.00053453486,0.00006528829,0.00026369496,0.0000010175703,0.000022853448,0.000011210512,0.000036002544],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992533,0.0000671498,0.00024339948,0.0001231914,0.000018055243,0.00029490204],"domain_scores_gemma":[0.99945104,0.000004318196,0.00019365556,0.00012243768,0.00006993469,0.00015861182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001132948,0.0001195869,0.00023199798,0.00019987232,0.00003394225,0.000006742412,0.00014356879,0.0003276504,0.00006604226],"category_scores_gemma":[0.000024961128,0.000104185885,0.00004313846,0.00006531937,0.00016221139,0.0000039043534,0.00003508357,0.00013837242,6.240611e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033977212,0.000008905155,0.012914019,0.000018754514,0.000032581742,0.000001705889,0.00015878046,0.0000017655334,0.9859416,0.000010507505,0.000047084726,0.00083032635],"study_design_scores_gemma":[0.00043518184,0.000109484674,0.04246175,0.0000117168465,0.00001932985,0.0001714832,0.00005483138,2.0882644e-7,0.9410387,0.00001904096,0.015575547,0.00010269495],"about_ca_topic_score_codex":0.0006010982,"about_ca_topic_score_gemma":0.02017695,"teacher_disagreement_score":0.04490286,"about_ca_system_score_codex":0.000020435225,"about_ca_system_score_gemma":0.00011629432,"threshold_uncertainty_score":0.99770224},"labels":[],"label_agreement":null},{"id":"W2313686433","doi":"10.1139/w11-073","title":"Gene cloning, structural gene and promoter identification, and active assay of the phosphatidylcholine synthase of <i>Pseudomonas</i> sp. strain 593","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Science Foundation","keywords":"Open reading frame; ORFS; Plasmid; Biology; Molecular biology; Shuttle vector; Molecular cloning; Promoter; Gene; Escherichia coli; Cloning (programming); XhoI; Expression vector; Complementary DNA; Gene expression; Genetics; Peptide sequence; Vector (molecular biology); Recombinant DNA; EcoRI","score_opus":0.007919351120019043,"score_gpt":0.19876393179952523,"score_spread":0.1908445806795062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2313686433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99705243,0.0018229628,0.000054398908,0.00020685015,0.0002603156,0.00011569503,0.00047215066,6.7597256e-7,0.000014541906],"genre_scores_gemma":[0.9984317,0.00018639147,0.0011674167,0.00007952718,0.00006283744,8.576846e-7,0.00003080925,0.00001012645,0.000030325858],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914867,0.00009020745,0.00038787382,0.00016659478,0.000023898503,0.00018275219],"domain_scores_gemma":[0.99901813,0.0000078140665,0.00045437316,0.00020212641,0.00020410212,0.00011346759],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023277686,0.000119342396,0.00022116216,0.00007530063,0.0000535799,0.0000064539618,0.0002468568,0.00026114768,0.000025894593],"category_scores_gemma":[0.000083074665,0.000088027075,0.000060675626,0.00005893009,0.00060709595,0.0000043290856,0.0000570666,0.00012800873,1.5371887e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053404794,0.000009134295,0.0037504807,0.0000102663935,0.00008794885,0.0000038132484,0.00016595986,5.9639024e-7,0.9935712,0.00003628439,0.00008346915,0.002227403],"study_design_scores_gemma":[0.00039633553,0.00027381713,0.02717817,0.000013728079,0.00004278941,0.0006628829,0.000051448842,9.47728e-7,0.96991587,0.00013091118,0.0012468045,0.00008631415],"about_ca_topic_score_codex":0.0004008418,"about_ca_topic_score_gemma":0.0020174938,"teacher_disagreement_score":0.023655389,"about_ca_system_score_codex":0.000010975094,"about_ca_system_score_gemma":0.0002904774,"threshold_uncertainty_score":0.35896397},"labels":[],"label_agreement":null},{"id":"W2314507702","doi":"10.1021/bi3015345","title":"Functional Mapping of PilF and PilQ in the <i>Pseudomonas aeruginosa</i> Type IV Pilus System","year":2013,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McMaster University; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Pilus; Periplasmic space; Bacterial outer membrane; Pseudomonas aeruginosa; Biogenesis; Lipid-anchored protein; Biology; Cell biology; Membrane protein; Biochemistry; Microbiology; Escherichia coli; Membrane; Bacteria; Genetics","score_opus":0.009080680859944927,"score_gpt":0.18935746081486904,"score_spread":0.1802767799549241,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2314507702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967473,0.0012714337,0.000032286953,0.00031071875,0.0001276738,0.00014731474,0.000010172568,0.000009225359,0.001343851],"genre_scores_gemma":[0.99909335,0.00012532661,0.0002280629,0.0001184891,0.00018860718,0.000022409738,0.000054841446,0.000009633125,0.00015928633],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992384,0.000025408915,0.00020651886,0.0002611775,0.00009128061,0.00017722121],"domain_scores_gemma":[0.9994871,0.000010637908,0.0000798746,0.0003151149,0.000072825474,0.000034459856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012437985,0.00012868401,0.00012732242,0.000025286547,0.000037854366,0.00002022227,0.00019178538,0.00026035408,0.0000161039],"category_scores_gemma":[0.000032431595,0.000099325596,0.000036986505,0.00011778026,0.00013510995,0.0000019267052,0.00011674385,0.000098431956,0.0000077787645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021668644,0.000030024226,0.001526634,0.00007428524,0.000015802992,0.000001287673,0.000015377153,0.000001033366,0.9960644,0.00006016222,0.0015963122,0.0005929759],"study_design_scores_gemma":[0.00041698487,0.00011201388,0.009712244,0.000034073262,0.000009093425,0.00008529529,0.00043020764,0.00003131423,0.98367614,0.00003514922,0.005296588,0.00016088474],"about_ca_topic_score_codex":0.000040652132,"about_ca_topic_score_gemma":0.000003473406,"teacher_disagreement_score":0.012388286,"about_ca_system_score_codex":0.00000962095,"about_ca_system_score_gemma":0.00004195389,"threshold_uncertainty_score":0.40503803},"labels":[],"label_agreement":null},{"id":"W2319653676","doi":"10.1021/bi300298v","title":"Type IV Secretion System Core Component VirB8 from <i>Brucella</i> Binds to the Globular Domain of VirB5 and to a Periplasmic Domain of VirB6","year":2012,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McMaster University; Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Förster resonance energy transfer; Phage display; Secretion; Function (biology); Protein–protein interaction; Cell biology; Computational biology; Domain (mathematical analysis); Biology; Chemistry; Biophysics; Peptide; Biochemistry; Physics; Gene; Escherichia coli; Fluorescence","score_opus":0.0069720518642331815,"score_gpt":0.21090426028147846,"score_spread":0.20393220841724527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2319653676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997159,0.001305565,0.00030152127,0.00024470218,0.00028011476,0.00025993848,0.00024624937,0.000012178512,0.00019073836],"genre_scores_gemma":[0.9971937,0.00006957778,0.0020414318,0.00012321593,0.00030729154,0.000015248412,0.00017829183,0.000021863578,0.00004937631],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988823,0.000039846847,0.0003195185,0.00033559758,0.00014842277,0.00027432677],"domain_scores_gemma":[0.99902153,0.0000110405645,0.00014800184,0.0005790285,0.0000841737,0.00015623818],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022572758,0.00020517554,0.0002581666,0.000029960898,0.000055921937,0.000011858048,0.00030408183,0.00038008622,0.000012952222],"category_scores_gemma":[0.000028788205,0.00016636263,0.00006120925,0.00015062564,0.00013228242,0.000001824867,0.00033656118,0.00008646402,0.000008359877],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002657161,0.000055229575,0.001073157,0.000073181625,0.00005808904,7.385082e-7,0.000092394,0.0000043482587,0.9973289,0.00007618747,0.0006959348,0.00027613412],"study_design_scores_gemma":[0.0003539436,0.00034525007,0.0013790233,0.000062292034,0.000030169753,0.000020353507,0.00042326163,0.000021742253,0.9778987,0.000015996187,0.019249482,0.00019978802],"about_ca_topic_score_codex":0.00006811708,"about_ca_topic_score_gemma":0.000009441291,"teacher_disagreement_score":0.019430192,"about_ca_system_score_codex":0.00002776312,"about_ca_system_score_gemma":0.000045385084,"threshold_uncertainty_score":0.6784071},"labels":[],"label_agreement":null},{"id":"W2321280922","doi":"10.1073/pnas.1520847113","title":"Mechanism for accurate, protein-assisted DNA annealing by <i>Deinococcus radiodurans</i> DdrB","year":2016,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Deinococcus radiodurans; Mechanism (biology); DNA; Computational biology; Biology; Computer science; Chemistry; Genetics; Physics","score_opus":0.02398644423753719,"score_gpt":0.27326260593044216,"score_spread":0.24927616169290498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2321280922","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932282,0.000104165265,0.000055905042,0.0057997177,0.000029643346,0.00037457392,0.00012577996,0.0000072617117,0.00027477596],"genre_scores_gemma":[0.9975089,0.00007403194,0.0017771904,0.00021732149,0.00009881453,0.000042657965,8.5137407e-7,0.0000059539043,0.00027431472],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900806,0.0000044902613,0.0002517218,0.00028526684,0.00027629035,0.00017415182],"domain_scores_gemma":[0.9993465,0.000016872535,0.0003019028,0.000013090077,0.0002946055,0.000027047336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047449765,0.00009955373,0.000120147146,0.000047476966,0.00012874075,0.000014536465,0.0006369357,0.00020850998,0.000002934853],"category_scores_gemma":[0.00026464145,0.000056094752,0.000079725294,0.00019126429,0.00046299415,0.00001330947,0.00008735089,0.00004486113,2.950868e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000345519,0.000019170977,0.000058996662,0.000022441842,0.00001504885,8.799189e-10,0.0000050294148,3.7655835e-7,0.9880678,0.009837582,0.0011560448,0.000782966],"study_design_scores_gemma":[0.0003306099,0.00016539109,0.00044244225,0.00004086631,0.000007444495,0.000004007817,0.000013776426,0.00001755458,0.98272187,0.012552502,0.0036147276,0.0000888021],"about_ca_topic_score_codex":0.0000012181538,"about_ca_topic_score_gemma":7.424135e-8,"teacher_disagreement_score":0.0055823964,"about_ca_system_score_codex":0.000010216283,"about_ca_system_score_gemma":0.000027680615,"threshold_uncertainty_score":0.22874777},"labels":[],"label_agreement":null},{"id":"W2323390184","doi":"10.1128/jb.00969-15","title":"Structure and Mutational Analyses of Escherichia coli ZapD Reveal Charged Residues Involved in FtsZ Filament Bundling","year":2016,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"FtsZ; Biology; Escherichia coli; Tubulin; Cell division; Protein filament; Cytoskeleton; Biophysics; Cell biology; Biochemistry; Microtubule; Cell; Gene","score_opus":0.016914566889615498,"score_gpt":0.2710407795293875,"score_spread":0.254126212639772,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2323390184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99828774,0.00063868356,0.000101986836,0.00066049735,0.00019940571,0.00006403908,0.000038331174,0.0000016842497,0.000007660323],"genre_scores_gemma":[0.9965929,0.0006313559,0.0024193868,0.00009746419,0.00020172348,0.0000012512548,0.000015788351,0.000009646615,0.000030521347],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892795,0.00011900548,0.0005370223,0.0001747472,0.00007262242,0.0001686523],"domain_scores_gemma":[0.9991608,0.000033751006,0.0004715774,0.00013178188,0.00014965984,0.00005239754],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002114832,0.00012686245,0.0003439276,0.00013450714,0.000021119104,0.0000072607386,0.0001527765,0.00030493853,0.000040909315],"category_scores_gemma":[0.00016288839,0.00008440082,0.00006632823,0.00007337574,0.00018332482,0.000006051906,0.00008760024,0.000115902396,3.247542e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036043575,0.00002996853,0.0197822,0.000013429473,0.000084187355,0.0000070139017,0.000024475135,0.0000055426976,0.97839105,0.000031015872,0.00006515865,0.0012055378],"study_design_scores_gemma":[0.00093384885,0.0008553352,0.22261044,0.000045091987,0.000021499713,0.00005309444,0.00003168154,0.0000025607383,0.7740087,0.0003807448,0.0009608309,0.000096191965],"about_ca_topic_score_codex":0.000013983577,"about_ca_topic_score_gemma":0.000065646534,"teacher_disagreement_score":0.20438236,"about_ca_system_score_codex":0.000017146676,"about_ca_system_score_gemma":0.00010906358,"threshold_uncertainty_score":0.34417656},"labels":[],"label_agreement":null},{"id":"W2327011266","doi":"10.1128/ecosal.5.2.3","title":"Modulation of Chemical Composition and Other Parameters of the Cell at Different Exponential Growth Rates","year":2008,"lang":"en","type":"article","venue":"EcoSal Plus","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":587,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Ribosome; RNA; Ribosomal RNA; Exponential growth; Protein biosynthesis; Biology; Messenger RNA; Cell biology; Growth rate; Gene; Biochemistry; Gene expression; Physics","score_opus":0.0093571077764178,"score_gpt":0.19872000772433096,"score_spread":0.18936289994791317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2327011266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995641,0.00007731216,0.000064951906,0.00006419039,0.00008223133,0.00008340154,0.000020740767,0.0000024078697,0.000040632607],"genre_scores_gemma":[0.999633,0.00003805394,0.0002138775,0.000027148515,0.000031507425,0.00000224583,0.0000262971,0.000006233707,0.000021607095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996239,0.000020310914,0.00012224815,0.00011663828,0.000046742294,0.000070156886],"domain_scores_gemma":[0.9997634,0.0000044394214,0.00007931163,0.000116652685,0.000020077961,0.000016072692],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000017080529,0.00006499863,0.00009262302,0.0000118151465,0.00002359423,0.0000016948924,0.000068868474,0.00012108358,0.000005924098],"category_scores_gemma":[0.0000047695253,0.000046433717,0.00004281681,0.000021796162,0.00013896936,7.843078e-7,0.00010682702,0.000030440662,4.352041e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009148307,0.00003380712,0.0030252417,0.000010670587,0.000010667776,1.1851889e-7,0.000021667285,0.0000090276735,0.99666715,0.000015214938,0.000071622635,0.000043332733],"study_design_scores_gemma":[0.00038688193,0.00006203782,0.012718314,0.000003884549,0.000007989253,0.0000076079,0.0000027867525,0.00017385084,0.9864919,0.000033582102,0.00005902164,0.00005211703],"about_ca_topic_score_codex":0.0000134052825,"about_ca_topic_score_gemma":0.0000047940443,"teacher_disagreement_score":0.01017522,"about_ca_system_score_codex":0.0000064922388,"about_ca_system_score_gemma":0.0000068024347,"threshold_uncertainty_score":0.1893512},"labels":[],"label_agreement":null},{"id":"W2334659610","doi":"10.1515/bc.2011.012","title":"A structural and functional analysis of type III periplasmic and substrate binding proteins: their role in bacterial siderophore and heme transport","year":2011,"lang":"en","type":"review","venue":"Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Siderophore; Biochemistry; Heme; Bacterial outer membrane; Chemistry; Transporter; Context (archaeology); Membrane transport protein; Escherichia coli; Ferric; ATP-binding cassette transporter; Transport protein; Biology; Enzyme; Gene","score_opus":0.03436409122248486,"score_gpt":0.2404141035002671,"score_spread":0.20605001227778225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2334659610","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6347991,0.36483714,3.9392683e-7,0.0000017810364,0.000027250639,0.00014788016,0.00016354234,0.0000047747026,0.000018092547],"genre_scores_gemma":[0.42797667,0.57105535,0.00003998888,0.0000026267155,0.00006440678,0.000017609213,0.0008127766,0.000010154014,0.000020392365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998633,0.0000378895,0.00043677524,0.00062727375,0.000040664618,0.00022434302],"domain_scores_gemma":[0.9994662,0.000012471355,0.00021102416,0.00020054738,0.000033655666,0.000076133976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010189622,0.00035480486,0.0009659462,0.000070544105,0.000037983846,0.0000140238935,0.00012077716,0.0011533288,0.00008157734],"category_scores_gemma":[0.00002323359,0.00024491412,0.00014637581,0.00020497199,0.00035269815,0.0000022591812,0.00014663725,0.00021521394,1.7672828e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021502939,0.000030046947,0.0015401258,0.0013364214,0.0005607003,0.000004139084,0.000018028586,1.7473175e-7,0.9699995,0.000009009561,0.000001150553,0.02628567],"study_design_scores_gemma":[0.005143378,0.0030982872,0.064814836,0.0033714082,0.0063158167,0.0008136483,0.0004807458,0.00008234556,0.54390156,0.00030612582,0.36605927,0.0056125927],"about_ca_topic_score_codex":0.000017925964,"about_ca_topic_score_gemma":0.000019253812,"teacher_disagreement_score":0.42609796,"about_ca_system_score_codex":0.000009478392,"about_ca_system_score_gemma":0.00006927089,"threshold_uncertainty_score":0.9987308},"labels":[],"label_agreement":null},{"id":"W2335945231","doi":"10.1515/hsz-2016-0124","title":"Probing catalytic rate enhancement during intramembrane proteolysis","year":2016,"lang":"en","type":"article","venue":"Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Alberta","funders":"Canadian Institutes of Health Research; Galápagos","keywords":"Oxyanion hole; Chemistry; Rhomboid; Histidine; Serine; Oxyanion; Catalytic triad; Stereochemistry; Residue (chemistry); Proteases; Cleave; Biochemistry; Catalysis; Enzyme","score_opus":0.009790875888626996,"score_gpt":0.21060068938144505,"score_spread":0.20080981349281807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2335945231","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982419,0.00017742804,0.0002854916,0.00050857174,0.00006571661,0.00019458774,0.000018409164,0.000042403863,0.00046549292],"genre_scores_gemma":[0.9972134,0.00040385412,0.0002766317,0.00006445513,0.00032529994,0.00008661054,0.00006074826,0.0000144121805,0.0015545769],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871075,0.000028647864,0.00024782287,0.0005636258,0.00006349272,0.00038567834],"domain_scores_gemma":[0.9993543,0.000009378044,0.00009535964,0.00039928395,0.000047361962,0.00009431969],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013208507,0.00021209322,0.00018471852,0.0000128463935,0.00007267712,0.000017789922,0.00029208435,0.00046218038,0.00024341595],"category_scores_gemma":[0.00014784184,0.00012809686,0.00009409857,0.00007253725,0.00020542354,0.000002087174,0.0002722683,0.0000883791,0.000036107987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000111121386,0.000055193912,0.00036543192,0.000028357948,0.000036535002,0.000004733245,0.0000023956395,3.2609506e-7,0.99631804,0.0000062890786,0.000041316718,0.0030302817],"study_design_scores_gemma":[0.00050683663,0.00013887853,0.0008539827,0.000022573948,0.0000069593602,0.00002111256,0.0000068894838,8.9238324e-7,0.9907804,0.00005483138,0.007356691,0.00024991648],"about_ca_topic_score_codex":0.0000017615273,"about_ca_topic_score_gemma":7.173079e-7,"teacher_disagreement_score":0.0073153744,"about_ca_system_score_codex":0.000028251598,"about_ca_system_score_gemma":0.000033984987,"threshold_uncertainty_score":0.52236384},"labels":[],"label_agreement":null},{"id":"W2337069703","doi":"10.1016/j.biochi.2016.04.007","title":"Subunit orientation in the Escherichia coli enterobactin biosynthetic EntA-EntE complex revealed by a two-hybrid approach","year":2016,"lang":"en","type":"article","venue":"Biochimie","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Enterobactin; Escherichia coli; Protein subunit; Biology; Cytoplasm; Fusion protein; Molecular biology; Biochemistry; Chemistry; Recombinant DNA; Gene","score_opus":0.015328428090079976,"score_gpt":0.24025593168042483,"score_spread":0.22492750359034486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2337069703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99516207,0.0001766562,0.0018611496,0.0015343083,0.00015807676,0.00040032738,0.00011178307,0.000018414625,0.00057720754],"genre_scores_gemma":[0.9974675,0.0002492944,0.0006833795,0.0007744122,0.0001399326,0.000055805504,0.00032031783,0.000023636883,0.00028571463],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985964,0.00019959015,0.00027813678,0.00045351218,0.00013379715,0.0003385699],"domain_scores_gemma":[0.9993267,0.000018564282,0.00012492684,0.00043690982,0.000038878658,0.00005401931],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026888037,0.00021276632,0.0001686995,0.000056766723,0.00007710464,0.00003811254,0.0004043386,0.00015253825,0.000044713735],"category_scores_gemma":[0.00004557322,0.00013223405,0.00008069981,0.00015024225,0.00017489975,0.000003921339,0.0001155207,0.00009886988,0.00002432184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011974734,0.0001818478,0.0014910942,0.000007734149,0.0000244589,0.0000015767769,0.00002342908,4.6072628e-7,0.99022305,0.0000974135,0.0056677945,0.0021614018],"study_design_scores_gemma":[0.0019973158,0.00042764668,0.007984329,0.000021719597,0.000028276336,0.000035632416,0.00012036631,0.000031919062,0.8766796,0.00008403375,0.11224878,0.00034041124],"about_ca_topic_score_codex":0.000046165285,"about_ca_topic_score_gemma":0.000040481067,"teacher_disagreement_score":0.113543466,"about_ca_system_score_codex":0.00002282873,"about_ca_system_score_gemma":0.00003300897,"threshold_uncertainty_score":0.5392348},"labels":[],"label_agreement":null},{"id":"W2337539572","doi":"10.71781/3648","title":"Étude transcriptionnelle d'une souche pathogène aviaire de Escherichia coli (APEC) et son mutant Pst (phosphate specific transport)","year":2008,"lang":"fr","type":"dissertation","venue":"Open MIND","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Escherichia coli; Mutant; Chemistry; Biology; Microbiology; Molecular biology; Biochemistry; Gene","score_opus":0.016712337216087225,"score_gpt":0.2515925433314052,"score_spread":0.23488020611531796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2337539572","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9853798,0.0066858674,0.00066479377,0.0015702726,0.001336126,0.0012958378,0.0007229934,0.0000067405313,0.0023375403],"genre_scores_gemma":[0.9495721,0.025575865,0.010053314,0.00019872664,0.00041436785,0.00010864865,0.008131809,0.00015168704,0.005793468],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9961725,0.00020102812,0.0009654304,0.0014671951,0.00026313454,0.00093073543],"domain_scores_gemma":[0.99816597,0.000013540174,0.0004837403,0.0008252754,0.00020838411,0.00030309896],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00041120467,0.00087467156,0.0008595564,0.000092117036,0.00040804668,0.00017163937,0.0012430319,0.0025000607,0.0019016414],"category_scores_gemma":[0.0000185504,0.00093854347,0.00042359176,0.00037086665,0.0004408254,0.00001986222,0.00011726549,0.0007846916,0.00021829404],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00097128283,0.00063135935,0.00033834824,0.000081295904,0.00024725,0.00018256495,0.002752055,0.000078739795,0.95299596,0.00009558163,0.0002317456,0.04139381],"study_design_scores_gemma":[0.0015596393,0.00076136104,0.009645306,0.00016898045,0.00019359188,0.0000732133,0.0016843395,0.000046297788,0.7049176,0.00003959331,0.2800019,0.0009081535],"about_ca_topic_score_codex":0.0010244459,"about_ca_topic_score_gemma":0.011411087,"teacher_disagreement_score":0.27977014,"about_ca_system_score_codex":0.000086391876,"about_ca_system_score_gemma":0.0007755901,"threshold_uncertainty_score":0.9993065},"labels":[],"label_agreement":null},{"id":"W2340285878","doi":"10.1093/femsle/fnv152","title":"Stable, temperature-sensitive recombinant strain of<i>Mycobacterium smegmatis</i>generated through the substitution of a psychrophilic<i>ligA</i>gene","year":2015,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Psychrophile; Strain (injury); Biology; Mycobacterium smegmatis; Microbiology; Gene; Bacteria; Recombinant DNA; Genetics; Mycobacterium tuberculosis; Tuberculosis","score_opus":0.01125540819973089,"score_gpt":0.21887324115868653,"score_spread":0.20761783295895564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340285878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99441993,0.0006481527,0.00041568486,0.0022101582,0.0013363868,0.0003594373,0.0005453451,0.000016873913,0.00004801614],"genre_scores_gemma":[0.9952861,0.0002682611,0.0015391677,0.0014137833,0.0002212908,0.000015215477,0.0011751886,0.000026269308,0.00005471948],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99835354,0.00024136208,0.0005004489,0.0004595036,0.00006381667,0.00038130165],"domain_scores_gemma":[0.9987711,0.000015295898,0.00033639188,0.0005829525,0.0002416806,0.000052631658],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030332082,0.00028032594,0.00039393894,0.00005726579,0.00007407374,0.000013367145,0.0003554132,0.0005041888,0.0000065564836],"category_scores_gemma":[0.00005587948,0.00020593133,0.00012945141,0.00022834587,0.00080426736,0.0000063457755,0.00016026858,0.00020630023,0.000006227747],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023226846,0.000077516845,0.00014139288,0.00001419431,0.0001579626,0.0000048598013,0.00013357664,0.00008283234,0.9930132,0.00014500172,0.005850863,0.00014630712],"study_design_scores_gemma":[0.0008761262,0.0004859154,0.00055456586,0.00002118411,0.000041914896,0.00015143637,0.00007954718,0.0000027466285,0.97502404,0.000044121276,0.022485837,0.00023257475],"about_ca_topic_score_codex":0.00010509814,"about_ca_topic_score_gemma":0.000053585914,"teacher_disagreement_score":0.017989194,"about_ca_system_score_codex":0.000024964003,"about_ca_system_score_gemma":0.00013947452,"threshold_uncertainty_score":0.8397636},"labels":[],"label_agreement":null},{"id":"W2343491354","doi":"10.1128/jb.00203-16","title":"Modulation of the Lytic Activity of the Dedicated Autolysin for Flagellum Formation SltF by Flagellar Rod Proteins FlgB and FlgF","year":2016,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; Natural Sciences and Engineering Research Council of Canada; Consejo Nacional de Ciencia y Tecnología; Government of Canada","keywords":"Autolysin; Peptidoglycan; Lytic cycle; Flagellum; Biology; Lysin; Biochemistry; Lysis; Periplasmic space; Cell wall; Alphaproteobacteria; Muramidase; Flagellin; Cell envelope; Lysozyme; Escherichia coli; Bacteriophage; Genetics","score_opus":0.006467181222560883,"score_gpt":0.20909623117961673,"score_spread":0.20262904995705586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2343491354","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991988,0.00010179407,0.0057233875,0.0016223874,0.00023124466,0.0002789949,0.00004607969,0.0000016831038,0.0000063996995],"genre_scores_gemma":[0.99933106,0.00014989113,0.00032136362,0.000033885684,0.00008840714,0.0000043322593,0.0000045479615,0.00000869474,0.000057796584],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916494,0.00012977676,0.00038556548,0.00011468063,0.000074540796,0.0001305195],"domain_scores_gemma":[0.99873847,0.000024698193,0.000797849,0.0002426615,0.00016967846,0.000026634316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028240745,0.00009980188,0.000224425,0.000036636266,0.000050034152,0.0000048127736,0.0002436635,0.0002926878,0.0000046166074],"category_scores_gemma":[0.00019006246,0.000049028287,0.00012313704,0.00006460884,0.00024146437,0.00001076411,0.00011889992,0.000076816665,1.5664241e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020170609,0.000035641384,0.00044676714,0.000026855329,0.00004636555,7.100436e-8,0.000020024956,0.000003587274,0.99418044,0.000015969521,0.00014105438,0.0048815426],"study_design_scores_gemma":[0.0007303375,0.0006311389,0.025944484,0.00003770137,0.000039109378,0.00004157395,0.000009004474,0.000084437364,0.96903294,0.0002388176,0.0031496005,0.0000608594],"about_ca_topic_score_codex":0.000003694455,"about_ca_topic_score_gemma":0.00000910931,"teacher_disagreement_score":0.025497718,"about_ca_system_score_codex":0.000014760696,"about_ca_system_score_gemma":0.00007224163,"threshold_uncertainty_score":0.22574762},"labels":[],"label_agreement":null},{"id":"W23580555","doi":"10.1093/nar/gkt249","title":"5125 痴呆性高齢者配慮尺度(施設版)による老人ホーム評価の試み : 痴呆性高齢者環境配慮尺度(施設版)の開発と有効性に関する研究(その2)(施設環境評価,建築計画I)","year":2001,"lang":"en","type":"article","venue":"e+i Elektrotechnik und Informationstechnik","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Engineering; Computer science; Electrical engineering","score_opus":0.006651371040479267,"score_gpt":0.234773267051944,"score_spread":0.22812189601146474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W23580555","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7932469,0.0033634158,0.074970394,0.004432254,0.001891824,0.0044093765,0.0004844974,0.0024081657,0.11479317],"genre_scores_gemma":[0.97443396,0.002749505,0.015360123,0.0017688347,0.00079392554,0.00042618587,0.0010384746,0.0001389136,0.0032900525],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99627864,0.00007121091,0.0012231584,0.00077782664,0.00051040493,0.0011387388],"domain_scores_gemma":[0.99713975,0.000022396938,0.00049328525,0.0017762586,0.00028089338,0.0002874147],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005403885,0.0007230845,0.00055462355,0.0005795369,0.0005721976,0.00022540157,0.001299028,0.0019943311,0.00037961084],"category_scores_gemma":[0.00016771849,0.00071857433,0.0003522903,0.0010309926,0.000438625,0.00007941442,0.0007130257,0.0009427849,0.00056959083],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025160486,0.0002885185,0.00052047893,0.00008414577,0.00023612396,0.000019234174,0.00008197459,0.000080963175,0.89380956,0.006402653,0.03415255,0.06407219],"study_design_scores_gemma":[0.0009301448,0.0006740501,0.0002914543,0.000043995202,0.00006117575,0.00029629102,0.00013465047,0.00013876919,0.2075369,0.00072363135,0.7883454,0.0008235339],"about_ca_topic_score_codex":0.000051530173,"about_ca_topic_score_gemma":0.00007044684,"teacher_disagreement_score":0.7541928,"about_ca_system_score_codex":0.00014800597,"about_ca_system_score_gemma":0.00024787983,"threshold_uncertainty_score":0.99952656},"labels":[],"label_agreement":null},{"id":"W2397958656","doi":"10.1186/s12862-016-0685-1","title":"Evolution of a global regulator: Lrp in four orders of γ-Proteobacteria","year":2016,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"College of Medicine and Life Sciences, University of Toledo; College of Graduate Studies, University of Toledo; University of Toledo; McMaster University","keywords":"Biology; Regulator; Genetics; Proteobacteria; Gene; Phylogenetic tree; Archaea; Regulatory sequence; Phylogenetics; Phylum; Computational biology; Evolutionary biology; Regulation of gene expression; 16S ribosomal RNA","score_opus":0.008877482452021773,"score_gpt":0.2321422225601462,"score_spread":0.22326474010812442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2397958656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950442,0.00075291947,0.0032305988,0.00015409071,0.00026221646,0.00020878785,0.00019438192,0.00001423104,0.00013861596],"genre_scores_gemma":[0.99545103,0.00008644481,0.0042388267,0.00001146901,0.00010217903,0.000018956265,0.00003681531,0.000009125386,0.000045154422],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987441,0.00013526568,0.00042273934,0.00036501995,0.000060127513,0.00027275563],"domain_scores_gemma":[0.99924666,0.00001579118,0.00019838601,0.0003818599,0.00011850715,0.000038802817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016047379,0.00015012815,0.0002511147,0.00007047925,0.000019683202,9.4474876e-7,0.00022979864,0.0005247828,0.00003474926],"category_scores_gemma":[0.00014417424,0.000115104165,0.0001217683,0.00019331025,0.00044430862,0.0000037022376,0.00018775495,0.00003966439,0.0000053443787],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027205117,0.000050479808,0.27658504,0.000014846687,0.000019420853,3.1459294e-7,9.557918e-7,0.0000039455776,0.715342,0.007109914,0.00012284699,0.00047821147],"study_design_scores_gemma":[0.0014674615,0.0010236319,0.8686019,0.000043325035,0.000013959077,0.00003973978,0.000015945785,0.000024708912,0.11667677,0.005821654,0.0060396004,0.00023128804],"about_ca_topic_score_codex":0.00013918092,"about_ca_topic_score_gemma":0.00025851562,"teacher_disagreement_score":0.5986652,"about_ca_system_score_codex":0.00008393327,"about_ca_system_score_gemma":0.00023832677,"threshold_uncertainty_score":0.46938115},"labels":[],"label_agreement":null},{"id":"W2400468090","doi":"10.1038/srep17653","title":"Re-engineering cellular physiology by rewiring high-level global regulatory genes","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Science Foundation Ireland; Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation","keywords":"rpoS; Regulon; Biology; Gene; Salmonella enterica; Organism; Sigma factor; Genetics; Transcription factor; Regulation of gene expression; Computational biology; Gene expression; Promoter; Escherichia coli","score_opus":0.012441794056689381,"score_gpt":0.21129557747502692,"score_spread":0.19885378341833754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2400468090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99035484,0.0016635252,0.0007713588,0.00014027624,0.0066892128,0.00013233259,0.00001984678,0.000050153347,0.00017844365],"genre_scores_gemma":[0.9963422,0.000018521585,0.0017447489,0.000040727846,0.0003065965,0.000011125723,0.000362407,0.00002070656,0.0011529621],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981458,0.000029891191,0.0003509484,0.00085905753,0.00021474886,0.00039953462],"domain_scores_gemma":[0.99849075,0.0000021326512,0.00016846186,0.0010139855,0.00015299646,0.00017167436],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005512484,0.0001949662,0.00019181374,0.000044895845,0.000101599726,0.00007561033,0.0002315758,0.00033832274,0.000015348856],"category_scores_gemma":[0.000097803444,0.00018864303,0.000075077565,0.00020518347,0.00021118434,0.0000054334855,0.00029565045,0.00007964631,0.000012999321],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012063172,0.000027647282,0.0005107422,0.0000081435455,0.00002277538,0.000025601148,0.000006483881,0.000168725,0.9686102,0.00003604704,0.029653266,0.0009182815],"study_design_scores_gemma":[0.00013572305,0.00007201251,0.0006883158,0.000005970156,0.000009988351,0.000050571387,0.000019893776,0.00003720132,0.8011115,0.0006108873,0.19705103,0.00020689525],"about_ca_topic_score_codex":0.000030108036,"about_ca_topic_score_gemma":0.000020369978,"teacher_disagreement_score":0.16749872,"about_ca_system_score_codex":0.000040535175,"about_ca_system_score_gemma":0.0001428651,"threshold_uncertainty_score":0.7692639},"labels":[],"label_agreement":null},{"id":"W2401402628","doi":"10.1038/srep26811","title":"Interconnection of post-transcriptional regulation: The RNA-binding protein Hfq is a novel target of the Lon protease in Pseudomonas aeruginosa","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Cystic Fibrosis Canada; Fundación Ramón Areces","keywords":"Proteases; Mutant; Biology; Cell biology; Pseudomonas aeruginosa; Protease; Transcriptional regulation; RNA; Stable isotope labeling by amino acids in cell culture; Swarming motility; RNA-binding protein; Gene; Microbiology; Gene expression; Quorum sensing; Genetics; Biochemistry; Virulence; Proteomics; Bacteria","score_opus":0.009124867124350986,"score_gpt":0.2142390308109164,"score_spread":0.2051141636865654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2401402628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960614,0.000043989716,0.00041602424,0.0017020642,0.0011072332,0.0005705951,0.00003015308,0.0000040942073,0.00006446537],"genre_scores_gemma":[0.9983629,0.0000024848391,0.00039428833,0.000016757349,0.000049455404,0.00003334898,0.000021785954,0.0000070240517,0.0011119436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883187,0.00004229041,0.00040733232,0.00037088973,0.00020072587,0.00014688149],"domain_scores_gemma":[0.9988473,0.000004515811,0.0003309418,0.00060147035,0.00019428205,0.00002148165],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006576493,0.00009363829,0.000104830724,0.00006856185,0.000083795174,0.000019066134,0.00018586249,0.00014511842,0.000047750407],"category_scores_gemma":[0.00013786806,0.000049142993,0.00009929989,0.00022238857,0.00040787953,0.0000066164675,0.000104968145,0.000059231264,8.983216e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004185234,0.00007086004,0.0021477628,0.000014686697,0.000011246921,9.621313e-7,0.000054423155,0.00000347811,0.9966908,0.00015481233,0.00013324537,0.00067585445],"study_design_scores_gemma":[0.00021465644,0.000073260555,0.0056213,0.00007726884,0.000004759133,0.000053124608,0.000031222804,0.000006199953,0.98519146,0.0010084818,0.0076478836,0.000070405666],"about_ca_topic_score_codex":0.000026922024,"about_ca_topic_score_gemma":0.000052173677,"teacher_disagreement_score":0.011499379,"about_ca_system_score_codex":0.00001549415,"about_ca_system_score_gemma":0.00013271223,"threshold_uncertainty_score":0.20039931},"labels":[],"label_agreement":null},{"id":"W2406540431","doi":"10.1007/s00253-016-7615-4","title":"Optimal secretion of alkali-tolerant xylanase in Bacillus subtilis by signal peptide screening","year":2016,"lang":"en","type":"article","venue":"Applied Microbiology and Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Key Science and Technology Program of Shaanxi Province; National Health and Medical Research Council; Australian Research Council; Queensland Cyber Infrastructure Foundation; Griffith University; National Medical Research Council; Natural Science Foundation of Shaanxi Province; National Natural Science Foundation of China","keywords":"Cutinase; Bacillus subtilis; Signal peptide; Xylanase; Bacillus pumilus; Secretion; Biochemistry; Peptide; Biology; Enzyme; Peptide sequence; Bacteria; Genetics; Gene","score_opus":0.004634486902723934,"score_gpt":0.18798211351056612,"score_spread":0.18334762660784218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2406540431","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99228275,0.00081328856,0.004950651,0.0013243913,0.000065936045,0.00024571025,0.00019335831,0.000035398018,0.00008852704],"genre_scores_gemma":[0.9963097,0.00097431726,0.0021510653,0.00016602331,0.000041538282,0.000024221905,0.00021225573,0.000020869864,0.00009999791],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99839365,0.00005027862,0.0004056393,0.00065278873,0.00003199844,0.00046562162],"domain_scores_gemma":[0.9993838,0.000024384868,0.00016565881,0.00034546302,0.00003172042,0.00004898652],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001959337,0.00026410748,0.00037607632,0.0001898528,0.000055698518,0.0000050191684,0.00028829672,0.0015873839,0.000045563964],"category_scores_gemma":[0.000022133028,0.00020130038,0.000058699476,0.00015859703,0.0009769406,0.000003215415,0.00031418746,0.00020162821,0.0000064185656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035806707,0.00005912004,0.0004772522,0.000011447162,0.000048820424,0.0000038689486,0.00001087537,0.000002883663,0.9778887,0.0005984789,0.0004183971,0.020122081],"study_design_scores_gemma":[0.0014588655,0.0005553795,0.0002825644,0.000019561634,0.000014656669,0.00009866065,0.00006516084,0.0000073985784,0.96036315,0.00009925219,0.0367672,0.00026815585],"about_ca_topic_score_codex":0.000032942284,"about_ca_topic_score_gemma":0.00008664179,"teacher_disagreement_score":0.0363488,"about_ca_system_score_codex":0.000012869203,"about_ca_system_score_gemma":0.000029593597,"threshold_uncertainty_score":0.9997088},"labels":[],"label_agreement":null},{"id":"W2407174002","doi":"10.1016/j.cell.2016.05.003","title":"A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria","year":2016,"lang":"en","type":"article","venue":"Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":786,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institute of General Medical Sciences; National Institute on Drug Abuse; National Institutes of Health","keywords":"Biology; Gene knockdown; CRISPR; Gene; RNA interference; Bacillus subtilis; Computational biology; Functional genomics; Function (biology); Phenotype; Gene regulatory network; Gene knockout; Genetics; Genomics; Gene expression; Cell biology; Bacteria; Genome; RNA","score_opus":0.00980833278088243,"score_gpt":0.224188237168881,"score_spread":0.2143799043879986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2407174002","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968109,0.00020942016,0.0025018328,0.00012531164,0.00015558963,0.000054019783,0.000050364448,0.0000047701587,0.00008778786],"genre_scores_gemma":[0.99892896,0.00012520915,0.0005397014,0.00006429363,0.00006502339,0.000005434607,0.00010950975,0.000007759578,0.00015409167],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999362,0.00003087608,0.00018055875,0.00023382461,0.000055442346,0.0001373162],"domain_scores_gemma":[0.99958044,0.000009747984,0.00006954413,0.0002425564,0.00006978533,0.000027945018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000037128506,0.000091291906,0.00016556693,0.00014787368,0.000013167953,0.0000045750453,0.0001059575,0.00017686884,0.00019571852],"category_scores_gemma":[0.000006523425,0.00006851374,0.00010748774,0.00020149391,0.00009144925,9.857812e-7,0.00005967152,0.000024953766,0.000005721845],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010542536,0.000072252886,0.0042294296,0.000008927936,0.00007814945,9.894287e-7,0.0000016657011,0.000061099614,0.9943995,0.000007648938,0.00013882582,0.0008960716],"study_design_scores_gemma":[0.00056999567,0.00010009546,0.066879846,0.0000033032775,0.00006865598,3.8153019e-7,0.000004862616,0.000049371036,0.9180661,0.000007673168,0.01415852,0.00009123935],"about_ca_topic_score_codex":0.000015901422,"about_ca_topic_score_gemma":0.000053861102,"teacher_disagreement_score":0.076333456,"about_ca_system_score_codex":0.000005746703,"about_ca_system_score_gemma":0.000041924817,"threshold_uncertainty_score":0.27939093},"labels":[],"label_agreement":null},{"id":"W2407310446","doi":"10.1385/1-59259-177-9:225","title":"PCR Screening in Signature-Tagged Mutagenesis of Essential Genes","year":2003,"lang":"en","type":"article","venue":"Humana Press eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Mutagenesis; Transposon mutagenesis; Biology; Insertional mutagenesis; Genetics; Gene; Transposable element; Mutant; Oligonucleotide; Inverse polymerase chain reaction; Functional genomics; Computational biology; Polymerase chain reaction; Site-directed mutagenesis; Genomics; Genome; Nested polymerase chain reaction","score_opus":0.021474211388258207,"score_gpt":0.24567773757345188,"score_spread":0.22420352618519368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2407310446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98785007,0.0057889167,0.00066758227,0.0000080111695,0.00016712694,0.00021000825,0.000013348944,0.000014573306,0.005280392],"genre_scores_gemma":[0.997245,0.00033675678,0.0014956426,0.00004563077,0.000093211,0.000018424493,0.000021443113,0.000023294757,0.000720587],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989929,0.00008284449,0.00026057637,0.00032294221,0.000093119255,0.00024758634],"domain_scores_gemma":[0.99944705,0.000005689101,0.000104476225,0.00035451088,0.000049454236,0.000038832535],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013734643,0.00015612094,0.00019094245,0.00007204669,0.000042228337,0.000014591211,0.00022063815,0.00033488323,0.000016535436],"category_scores_gemma":[0.00002588384,0.00015509322,0.00007964736,0.000023872257,0.00012258918,0.0000013378766,0.00010781872,0.00009838211,5.743928e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005318082,0.000035566594,0.000116942974,0.000022776278,0.000044291828,0.000005480423,0.000028808352,0.00004568685,0.9848583,0.0015767404,0.00007479012,0.013137459],"study_design_scores_gemma":[0.00052396103,0.00010584918,0.0005167341,0.000012671257,0.000017873966,0.000005249316,0.000018524965,0.000012376427,0.9397318,0.00007346865,0.058811344,0.00017016592],"about_ca_topic_score_codex":0.00007952338,"about_ca_topic_score_gemma":0.00012735093,"teacher_disagreement_score":0.058736555,"about_ca_system_score_codex":0.0000031275104,"about_ca_system_score_gemma":0.000028603223,"threshold_uncertainty_score":0.6324518},"labels":[],"label_agreement":null},{"id":"W2410158973","doi":"10.21775/cimb.015.001","title":"The Molecularly Crowded Cytoplasm of Bacterial Cells: Dividing Cells Contrasted with Viable but Non-culturable (VBNC) Bacterial Cells","year":2013,"lang":"en","type":"review","venue":"Current Issues in Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cytoplasm; Viable but nonculturable; Cell division; Biology; Cell biology; Bacteria; Cell; Microbiology; Bacterial cell structure; Genetics","score_opus":0.014940090494717348,"score_gpt":0.28936845662484334,"score_spread":0.274428366130126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2410158973","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06958999,0.9204825,0.0012873021,0.000034006338,0.005118786,0.0029158301,0.00043254474,0.00007714217,0.00006191348],"genre_scores_gemma":[0.0038892187,0.9912431,0.0017855004,0.000020334595,0.0007007957,0.0004281808,0.0014580737,0.00028718682,0.00018755585],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9945771,0.0007867433,0.0015666112,0.0015183402,0.00025071466,0.0013004936],"domain_scores_gemma":[0.9967693,0.000094121984,0.0011284284,0.0014972194,0.00031608812,0.00019481142],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00049447897,0.001251591,0.0023934403,0.00024661876,0.00014263683,0.0002062731,0.0016879305,0.0020374323,0.000045476514],"category_scores_gemma":[0.00008341849,0.0008493531,0.0006037322,0.00042977178,0.0008890667,0.000012468436,0.00085272756,0.00082266494,0.0000336547],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014732257,0.0001740665,0.0000023845146,0.0011949607,0.00037861304,0.000016473523,0.000023389533,0.0000057854004,0.94961196,0.00007353312,0.00046746602,0.047904056],"study_design_scores_gemma":[0.00069466437,0.00061607815,4.027975e-7,0.0007376362,0.00021655347,0.000016490161,0.000017256598,0.0000040538234,0.47535518,0.00001980451,0.52174014,0.000581777],"about_ca_topic_score_codex":0.000079638136,"about_ca_topic_score_gemma":0.000046158995,"teacher_disagreement_score":0.52127266,"about_ca_system_score_codex":0.00007813129,"about_ca_system_score_gemma":0.00043758942,"threshold_uncertainty_score":0.9993957},"labels":[],"label_agreement":null},{"id":"W2412324688","doi":"10.1107/s1744309113018927","title":"Cloning, expression, purification and preliminary X-ray diffraction studies of a novel AB<sub>5</sub>toxin","year":2013,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology and Crystallization Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Health and Medical Research Council; Australian Research Council; Medical Research Council; Australian Synchrotron; Pfizer","keywords":"Escherichia coli; Protein subunit; Citrobacter freundii; Toxin; Biology; Virulence factor; Cloning (programming); Serine protease; Microbiology; Molecular biology; Chemistry; Virulence; Protease; Biochemistry; Enzyme; Enterobacteriaceae; Gene","score_opus":0.016125300653005006,"score_gpt":0.2654732795221569,"score_spread":0.2493479788691519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2412324688","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99279654,0.0025653099,0.00284021,0.0010690477,0.00015395376,0.0004683778,0.000035186327,0.000043639928,0.000027753833],"genre_scores_gemma":[0.9789336,0.017168041,0.0030241958,0.000086759545,0.00007158873,0.00010523621,0.0005802018,0.0000183567,0.000012039957],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987021,0.00016600348,0.0004545166,0.0004139714,0.00006781888,0.00019560699],"domain_scores_gemma":[0.99844533,0.0000685981,0.0003821202,0.00066282455,0.0003700407,0.000071100076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001452563,0.00022272671,0.00024105854,0.00019925536,0.00044634286,0.00003617683,0.00026451977,0.0004955708,0.0000069948596],"category_scores_gemma":[0.00015240369,0.00019886036,0.00005967277,0.00027230094,0.0009315676,0.000038848422,0.00037613706,0.00019835048,1.0788058e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006163665,0.000051909297,0.002672192,0.000030369416,0.00010091412,3.1803378e-8,0.00009466612,0.000015466097,0.99476385,0.00056075474,0.00009692991,0.0015512748],"study_design_scores_gemma":[0.0028920386,0.0026732113,0.49635318,0.00015691016,0.0002542471,0.0001728222,0.0022941115,0.0023753874,0.45401868,0.005142827,0.03240881,0.0012577617],"about_ca_topic_score_codex":0.000027578782,"about_ca_topic_score_gemma":0.000053444932,"teacher_disagreement_score":0.5407452,"about_ca_system_score_codex":0.000010599501,"about_ca_system_score_gemma":0.000024093231,"threshold_uncertainty_score":0.81092906},"labels":[],"label_agreement":null},{"id":"W2412584429","doi":"10.1007/978-1-60327-545-3_2","title":"High-Throughput Screening of Model Bacteria","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"High-throughput screening; Bacteria; Throughput; Computational biology; Biochemical engineering; Small molecule; Biology; Chemistry; Nanotechnology; Biochemistry; Computer science; Engineering; Genetics; Materials science","score_opus":0.022697907494314162,"score_gpt":0.3585709843907485,"score_spread":0.33587307689643436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2412584429","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.37567648,0.00036635133,0.62329036,0.00025186734,0.00012152465,0.00011554351,0.000013458024,0.000010928517,0.00015345289],"genre_scores_gemma":[0.3307325,0.0001256208,0.6685687,0.0003979781,0.000046934263,0.000006946745,0.00006677783,0.00001450935,0.000040072384],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99822575,0.0003683056,0.00044665695,0.00052548706,0.000052536037,0.00038129115],"domain_scores_gemma":[0.9991387,0.00001495929,0.00015406098,0.0005747195,0.00006579095,0.000051769635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006116502,0.00022427524,0.00039197263,0.00013994072,0.000025517083,0.0000074194563,0.00038789466,0.0006464426,0.000014143348],"category_scores_gemma":[0.00017915493,0.00021656971,0.00012007444,0.00019405952,0.00017712243,0.000001937704,0.00018560715,0.000169606,0.0000010781995],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000867981,0.00005920919,0.00013880541,0.00000485206,0.000025086943,0.0000029368816,0.000009340336,0.0005428654,0.95104,0.005071811,0.000020387035,0.042997867],"study_design_scores_gemma":[0.0005696443,0.00066607783,0.0009149062,0.000009521992,0.000013029195,0.000010931457,0.000007019942,0.00070206285,0.98258144,0.012469659,0.001822542,0.00023315716],"about_ca_topic_score_codex":0.000021071399,"about_ca_topic_score_gemma":0.0000056345943,"teacher_disagreement_score":0.045278277,"about_ca_system_score_codex":0.00000897849,"about_ca_system_score_gemma":0.000048283844,"threshold_uncertainty_score":0.8831457},"labels":[],"label_agreement":null},{"id":"W2414711496","doi":"10.1007/978-1-60327-412-8_9","title":"Reconstitution of the SecY Translocon in Nanodiscs","year":2010,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Translocon; Lipid bilayer; Membrane; Micelle; Biophysics; Membrane protein; Liposome; Chemistry; Nanotechnology; Materials science; Biology; Biochemistry","score_opus":0.010419399802657936,"score_gpt":0.33409211860832955,"score_spread":0.3236727188056716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2414711496","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94988966,0.00025197968,0.04778042,0.00042811062,0.00073700247,0.00023956508,0.000010367517,0.0000045930606,0.00065828254],"genre_scores_gemma":[0.835006,0.00006502279,0.16468139,0.00014159958,0.000035951558,0.000021723736,0.000014469825,0.000010176405,0.000023633063],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986562,0.0004374275,0.00032180652,0.00032146942,0.000033377073,0.00022970779],"domain_scores_gemma":[0.9993641,0.000017607783,0.00009272135,0.00047243992,0.0000307821,0.000022355098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007360889,0.00012947479,0.00020234767,0.00009656761,0.000019947718,0.0000036457702,0.00036381948,0.0006288719,0.000016306496],"category_scores_gemma":[0.00026440521,0.00009865746,0.00009262285,0.00023055592,0.00042278014,0.0000010625696,0.00013532743,0.00030792502,6.752168e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028435972,0.000042857122,0.0077457903,0.000006656037,0.000008415966,0.0000013230106,0.000013609869,0.000010871488,0.9725733,0.0039264243,0.0000036162112,0.015638698],"study_design_scores_gemma":[0.0004277985,0.00010990889,0.0038185145,0.000007332178,0.0000051935035,0.000017031258,0.000010076734,0.000021182721,0.97976905,0.003502958,0.012194484,0.000116458854],"about_ca_topic_score_codex":0.000054532462,"about_ca_topic_score_gemma":0.00054896006,"teacher_disagreement_score":0.11690098,"about_ca_system_score_codex":0.0000065160575,"about_ca_system_score_gemma":0.00008051204,"threshold_uncertainty_score":0.48504362},"labels":[],"label_agreement":null},{"id":"W2415055120","doi":"10.1038/srep20519","title":"Persistence Increases in the Absence of the Alarmone Guanosine Tetraphosphate by Reducing Cell Growth","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Army Research Office; Institute of Genetics; Keio University; Pennsylvania State University","keywords":"Stringent response; Guanosine; Escherichia coli; Persistence (discontinuity); Intracellular; Biology; Microbiology; Plasmid; Protein biosynthesis; Bacteria; RNA polymerase; Chemistry; Biochemistry; Gene; Genetics","score_opus":0.006930026833044034,"score_gpt":0.19443277968907366,"score_spread":0.18750275285602963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2415055120","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99703133,0.0012308807,0.000021204116,0.0005533491,0.0007347971,0.000155267,0.000009218938,0.0000039992406,0.000259945],"genre_scores_gemma":[0.99892163,0.00017721315,0.00007951898,0.000051398303,0.000027281456,0.000007693415,0.00000830046,0.000006050393,0.00072091096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884516,0.00005544947,0.00027594052,0.00043627876,0.00018690253,0.00020026296],"domain_scores_gemma":[0.99888486,0.000012039156,0.00020747243,0.0007833886,0.00008660778,0.000025641946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006456514,0.00009491126,0.00009162996,0.00003210212,0.00010557749,0.000032639287,0.0003709929,0.00010408896,0.000011068441],"category_scores_gemma":[0.00016785614,0.000045342826,0.000072013194,0.00030474918,0.00054499565,0.0000037352634,0.00014772384,0.000051063405,0.0000010960092],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000006643526,0.000060875325,0.006267284,0.0000063456737,0.0000035310975,0.0000070148444,0.000023218143,5.548145e-7,0.98824793,0.0000084235135,0.0047425292,0.0006256573],"study_design_scores_gemma":[0.00009239919,0.000052596435,0.0060986257,0.000031982814,0.0000051590155,0.000060639893,0.000049321014,0.0000010309409,0.9833339,0.00026604492,0.009931277,0.000077034645],"about_ca_topic_score_codex":0.00010343847,"about_ca_topic_score_gemma":0.000021523523,"teacher_disagreement_score":0.0051887473,"about_ca_system_score_codex":0.000007034932,"about_ca_system_score_gemma":0.00007080628,"threshold_uncertainty_score":0.20080592},"labels":[],"label_agreement":null},{"id":"W2415828882","doi":"10.1007/978-1-4939-0473-0_41","title":"Signature-Tagged Mutagenesis","year":2014,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Insertional mutagenesis; Mutagenesis; Biology; Virulence; Mutant; Phenotype; Gene; Genetics; Genome; Computational biology; Population; Medicine","score_opus":0.00983364260513052,"score_gpt":0.3328258186153264,"score_spread":0.32299217601019586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2415828882","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.26450208,0.0009203339,0.7318822,0.00040473504,0.0004876911,0.00019640877,0.000006944823,0.00003134212,0.0015682462],"genre_scores_gemma":[0.33663863,0.00013806402,0.6611168,0.0015291895,0.0001928076,0.00004640474,0.000092539696,0.00004373824,0.00020186925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99746084,0.0010375417,0.00032764074,0.0006607433,0.000054598928,0.00045863632],"domain_scores_gemma":[0.9990827,0.000041511157,0.00009823179,0.0006501442,0.000053366468,0.000074066505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010635153,0.00025131323,0.00032018346,0.00015533462,0.00004381924,0.000014122649,0.0004473939,0.00086564146,0.00003367042],"category_scores_gemma":[0.000545988,0.00023440144,0.00012795161,0.0002273509,0.00020417856,0.0000011027514,0.00028253364,0.0002241894,0.000010207981],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003931669,0.000039706796,0.0007174354,0.0000063612943,0.000027961494,0.0000035430367,0.0000056844697,0.000024809146,0.95042294,0.0025432878,0.000058739104,0.046110235],"study_design_scores_gemma":[0.00047996372,0.0004102108,0.00056602136,0.000004294106,0.0000116362135,0.00001566666,0.000006593971,0.00011291838,0.8842487,0.0037395365,0.11012844,0.0002760219],"about_ca_topic_score_codex":0.00001693989,"about_ca_topic_score_gemma":0.00002001608,"teacher_disagreement_score":0.1100697,"about_ca_system_score_codex":0.0000128237125,"about_ca_system_score_gemma":0.000035737154,"threshold_uncertainty_score":0.95586133},"labels":[],"label_agreement":null},{"id":"W2419398710","doi":"10.1042/bcj20160470","title":"Discovery, characterization and <i>in vivo</i> activity of pyocin SD2, a protein antibiotic from <i>Pseudomonas aeruginosa</i>","year":2016,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; University of Glasgow; Wellcome Trust; Wellcome","keywords":"Pseudomonas aeruginosa; Antibiotics; Bacteriocin; Bacterial outer membrane; Microbiology; In vivo; Biology; Chemistry; Bacteria; Antimicrobial; Biochemistry; Escherichia coli; Gene; Genetics","score_opus":0.0053346513793533995,"score_gpt":0.2047772048532774,"score_spread":0.199442553473924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2419398710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99721366,0.00019581655,0.0014844546,0.0007010524,0.000103432976,0.00013621304,0.00014208214,0.000005122746,0.000018135097],"genre_scores_gemma":[0.9984965,0.0006190373,0.0004307713,0.000054470744,0.0002600181,0.0000025991135,0.000016950979,0.000015403688,0.00010429561],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905056,0.00005471068,0.00026445184,0.0002959391,0.000109043285,0.00022527899],"domain_scores_gemma":[0.9994838,0.000010885557,0.00018757688,0.00019686691,0.00004552883,0.00007533562],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011594991,0.00015529295,0.00021082882,0.000049942166,0.000028215694,0.000030635558,0.00016753445,0.00031768568,0.000011648324],"category_scores_gemma":[0.000070556336,0.00010955848,0.00006574809,0.00007283222,0.00017401973,0.000011996225,0.00014515291,0.00011741102,0.0000011055706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003149067,0.00009989288,0.0029534353,0.000009211504,0.00002321819,0.000004128919,0.000004667178,3.0344808e-8,0.99127984,0.000011394435,0.000075838936,0.005223444],"study_design_scores_gemma":[0.00095466984,0.00017898419,0.010089999,0.00010719465,0.00001040272,0.00003553309,0.0000035224411,0.0000022171623,0.9869912,0.000074710595,0.0013922068,0.00015934581],"about_ca_topic_score_codex":0.000014103961,"about_ca_topic_score_gemma":0.0000059854656,"teacher_disagreement_score":0.0071365642,"about_ca_system_score_codex":0.000016237418,"about_ca_system_score_gemma":0.00005832804,"threshold_uncertainty_score":0.44676653},"labels":[],"label_agreement":null},{"id":"W2420408101","doi":"10.1111/mmi.13444","title":"Identification of the first transcriptional activator of an archaellum operon in a euryarchaeon","year":2016,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Public Health Agency of Canada; Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Operon; Biology; Molecular biology; Mutant; Transcription (linguistics); Electrophoretic mobility shift assay; Gene; Promoter; RNA; Gene expression; Genetics","score_opus":0.00461871986593739,"score_gpt":0.20262435133029572,"score_spread":0.19800563146435832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2420408101","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772936,0.000159329,0.0008855081,0.00077713834,0.00014962,0.00018527468,0.0001002991,0.0000031462914,0.000010309034],"genre_scores_gemma":[0.99959695,0.00005213766,0.00014761242,0.00008407972,0.000023164604,0.000012011012,0.00003317731,0.000012468073,0.00003840063],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990749,0.000104995954,0.0003181337,0.00028066157,0.000035990794,0.00018532822],"domain_scores_gemma":[0.9993634,0.000005514617,0.00013821073,0.0004175844,0.0000546398,0.00002065079],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016629811,0.00010557967,0.00014828176,0.00006158845,0.000019734844,0.0000017223996,0.00037354723,0.000261125,0.000011615286],"category_scores_gemma":[0.000037619786,0.00006820693,0.000083223975,0.00009586486,0.00042902346,0.0000024886826,0.00012910271,0.000056525914,0.0000014034956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010325504,0.00008686676,0.001004805,0.000012267484,0.000019368521,7.151431e-7,0.000029218856,0.0000059642202,0.99724317,0.000401349,0.0000074313925,0.0010856165],"study_design_scores_gemma":[0.0005236725,0.00025893564,0.00774243,0.000017525772,0.0000065818977,0.000020266116,0.000010084481,0.0000025418897,0.9854423,0.00014173849,0.005748105,0.00008584326],"about_ca_topic_score_codex":0.000015070355,"about_ca_topic_score_gemma":0.00012006135,"teacher_disagreement_score":0.011800867,"about_ca_system_score_codex":0.000011699073,"about_ca_system_score_gemma":0.000048804133,"threshold_uncertainty_score":0.2781398},"labels":[],"label_agreement":null},{"id":"W2425589779","doi":"10.1007/978-1-62703-245-2_21","title":"Using Reporter Genes and the Escherichia coli ASKA Overexpression Library in Screens for Regulators of the Gram Negative Envelope Stress Response","year":2012,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Reporter gene; Plasmid; Gene; Biology; Promoter; Escherichia coli; Bioreporter; Genetics; Transcription (linguistics); Gene expression; Molecular biology","score_opus":0.02383802945666883,"score_gpt":0.3434227793421443,"score_spread":0.31958474988547547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2425589779","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96380657,0.0016259043,0.033338275,0.0003665704,0.00019349917,0.00060228235,0.000030263369,0.0000046765285,0.00003194353],"genre_scores_gemma":[0.6656963,0.00012198771,0.33376804,0.00023289758,0.000056825465,0.000049891325,0.00001381487,0.00002356918,0.000036627025],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968842,0.0020308013,0.0004006876,0.00032144238,0.000046439192,0.00031639152],"domain_scores_gemma":[0.999021,0.00017824482,0.00024601838,0.0004854204,0.000032343294,0.00003698698],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015087225,0.00017747197,0.00029978403,0.00007477028,0.000055299523,0.000009843294,0.00027841982,0.00048413975,0.0000036295553],"category_scores_gemma":[0.00070296595,0.00010848426,0.00009973607,0.00020282726,0.00061137014,0.0000050508847,0.0005051933,0.00013986991,3.978693e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012250353,0.000038726994,0.013476063,0.000013115334,0.000032340547,6.163026e-7,0.0000782664,0.000017941898,0.98154736,0.00074622745,0.000008775059,0.0028155386],"study_design_scores_gemma":[0.001026077,0.00012625815,0.013993237,0.000031389907,0.00001776519,0.000009580392,0.00008921174,0.00014593387,0.97935474,0.0018459401,0.0032185526,0.00014134364],"about_ca_topic_score_codex":0.000036547008,"about_ca_topic_score_gemma":0.000010580651,"teacher_disagreement_score":0.30042976,"about_ca_system_score_codex":0.000009205279,"about_ca_system_score_gemma":0.0000724874,"threshold_uncertainty_score":0.44238597},"labels":[],"label_agreement":null},{"id":"W2429085532","doi":"10.1385/0-89603-381-3:191","title":"Isolation and Characterization of Porins from H. pylori","year":2003,"lang":"en","type":"article","venue":"Humana Press eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Bacterial outer membrane; Membrane; Lipopolysaccharide; Chemistry; Outer membrane efflux proteins; Divalent; Biochemistry; Bacteria; Gram-negative bacteria; Glycolipid; Microbiology; Escherichia coli; Biology; Organic chemistry","score_opus":0.019431621630170953,"score_gpt":0.2244034368100194,"score_spread":0.20497181517984844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2429085532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958041,0.0003646577,0.0008502435,0.0000064101578,0.00012342546,0.00008892868,0.000027755423,0.00000755297,0.0027269393],"genre_scores_gemma":[0.9986648,0.00029803178,0.00041499984,0.00002737857,0.00008212446,0.0000060718653,0.000103344784,0.000009560747,0.00039370172],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99955803,0.000024919447,0.00012444583,0.00016961651,0.00004089989,0.0000820929],"domain_scores_gemma":[0.99968815,0.0000018558053,0.00007426148,0.0001783267,0.000035375946,0.000022023203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000040227485,0.000072503986,0.00008153646,0.000018456189,0.000028293594,0.000010642824,0.000055709326,0.0001611667,0.000007263144],"category_scores_gemma":[0.000008670149,0.00007205685,0.000019271478,0.000005872306,0.000054281896,0.0000012428765,0.000040874726,0.0000358197,3.4815545e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016392198,0.000009683407,0.000118318785,0.000005341028,0.000018514898,2.2198368e-7,0.0000323423,2.1930047e-7,0.9900328,0.0032701173,0.000008028046,0.006488018],"study_design_scores_gemma":[0.00023207221,0.00008765453,0.0050154678,0.000004318009,0.000012842804,0.0000012193033,0.000005251235,0.0000105951485,0.9185385,0.00020336274,0.07580681,0.00008186898],"about_ca_topic_score_codex":0.000039354214,"about_ca_topic_score_gemma":0.000013416121,"teacher_disagreement_score":0.07579878,"about_ca_system_score_codex":0.0000017732714,"about_ca_system_score_gemma":0.000009895279,"threshold_uncertainty_score":0.2938393},"labels":[],"label_agreement":null},{"id":"W2431134187","doi":"10.15002/00013049","title":"Regulation of xenobiotic efflux systems in Escherichia coli in response to environmental changes","year":2016,"lang":"en","type":"dissertation","venue":"Institutional Repositories DataBase (IRDB)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; RIKEN; Kitasato University; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; Keio University","keywords":"Efflux; Xenobiotic; Escherichia coli; Chemistry; Biology; Biochemistry; Gene","score_opus":0.006885320187637925,"score_gpt":0.23125651719736542,"score_spread":0.2243711970097275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2431134187","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951147,0.0009172145,0.000033722703,0.00009608631,0.0021925578,0.00054407096,0.000902044,0.000008826707,0.00019081472],"genre_scores_gemma":[0.9923243,0.0003013707,0.00023874953,0.000017435372,0.0004453853,0.000096715805,0.0054328786,0.000026012694,0.0011171426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99830645,0.00012875715,0.00050432194,0.00055127294,0.000259044,0.00025014742],"domain_scores_gemma":[0.99910504,0.000028786484,0.00023924773,0.00049928523,0.000059039292,0.000068576126],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00030223132,0.00026986504,0.00031959347,0.00026381126,0.000068925394,0.000024927194,0.00025425974,0.000609577,0.000010525544],"category_scores_gemma":[0.00022192248,0.00025737192,0.000050449296,0.00018055749,0.00013193145,0.000009911605,0.00012881955,0.00015295649,0.000009275106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022407884,0.00010561106,0.0011257512,0.00011059011,0.00003044322,0.000015382353,0.000050120296,0.000058993443,0.9956833,0.00027380764,0.000082768194,0.00022241606],"study_design_scores_gemma":[0.0006276141,0.00036418939,0.1076987,0.00060559815,0.000018964074,0.000016577082,0.00011632964,0.000007434053,0.85712993,0.0000104333085,0.03307225,0.000331961],"about_ca_topic_score_codex":0.00025319355,"about_ca_topic_score_gemma":0.00093474524,"teacher_disagreement_score":0.13855338,"about_ca_system_score_codex":0.00018583817,"about_ca_system_score_gemma":0.00034980683,"threshold_uncertainty_score":0.99998784},"labels":[],"label_agreement":null},{"id":"W2437557520","doi":"10.1038/srep10773","title":"Burkholderia cenocepacia and Salmonella enterica ArnT proteins that transfer 4-amino-4-deoxy-l-arabinose to lipopolysaccharide share membrane topology and functional amino acids","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Trust","keywords":"Burkholderia cenocepacia; Periplasmic space; Biochemistry; Amino acid; Bacterial outer membrane; Biology; Topology (electrical circuits); Transamination; Membrane topology; Chemistry; Transmembrane domain; Gene; Escherichia coli","score_opus":0.022925248214020182,"score_gpt":0.2324457267299017,"score_spread":0.20952047851588154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2437557520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945806,0.0005357048,0.0004961118,0.0007958659,0.0027534908,0.0005426355,0.00003521524,0.000036705234,0.00022362765],"genre_scores_gemma":[0.9970704,0.0000597063,0.00060156034,0.00017901116,0.0002164518,0.000058962043,0.00019340747,0.000026874937,0.0015936269],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976729,0.00004319561,0.00037746318,0.0011917185,0.00026269993,0.00045199654],"domain_scores_gemma":[0.9986875,0.0000052118144,0.00009574941,0.0006768182,0.00016606074,0.0003686437],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005026652,0.00027687286,0.00028388674,0.0001432091,0.00019572706,0.00019199614,0.00014100951,0.00036693015,0.00008174342],"category_scores_gemma":[0.00010174586,0.00024871045,0.00006571581,0.00014861996,0.00048606563,0.000011401312,0.00029796324,0.00012939399,0.000008849231],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106582534,0.000060532453,0.0024799549,0.000021181566,0.000033227407,0.00006800738,0.00014184555,0.000004001038,0.99331176,0.000047907513,0.002091074,0.0016339287],"study_design_scores_gemma":[0.0003716103,0.0004511524,0.00378829,0.000015488775,0.000027764263,0.00087691355,0.00017402312,0.000009804733,0.914557,0.0004317796,0.07897839,0.0003177961],"about_ca_topic_score_codex":0.00004937565,"about_ca_topic_score_gemma":0.00008357815,"teacher_disagreement_score":0.07875477,"about_ca_system_score_codex":0.000020814638,"about_ca_system_score_gemma":0.00013929122,"threshold_uncertainty_score":0.99999654},"labels":[],"label_agreement":null},{"id":"W2462852581","doi":"10.1007/s00203-016-1219-3","title":"The flagellin hypervariable region is a potential flagella display domain in probiotic Escherichia coli strain Nissle 1917","year":2016,"lang":"en","type":"article","venue":"Archives of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Flagellin; Hypervariable region; Flagellum; Biology; Escherichia coli; Mutant; Microbiology; Heterologous; Strain (injury); Plasmid; Genetics; Bacteria; Gene","score_opus":0.004604840936667467,"score_gpt":0.1923300281581605,"score_spread":0.18772518722149303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2462852581","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945126,0.00049533596,0.0018823291,0.0020519595,0.00023720379,0.0003329264,0.00016293746,0.000009799893,0.00031486197],"genre_scores_gemma":[0.9945699,0.0017419487,0.002281199,0.00017664245,0.000114843395,0.000017030208,0.00008829424,0.000024764135,0.0009853947],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984081,0.0002168942,0.000393037,0.00047228005,0.000031728738,0.0004779863],"domain_scores_gemma":[0.9991658,0.00006758213,0.00017339338,0.0005194725,0.000024574281,0.000049212664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019556993,0.00021356436,0.0002558326,0.000071880146,0.00009646227,0.000012327629,0.0005149272,0.00034437122,0.000015484417],"category_scores_gemma":[0.000044931152,0.00013107932,0.0001225198,0.00009439276,0.0007906404,0.000002554971,0.00029803734,0.0001287308,0.000011295616],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003517256,0.00007306,0.00036618824,0.000013824691,0.000054146418,0.000006426404,0.00006320715,0.000003877222,0.99330586,0.0004975124,0.00043128672,0.0048328973],"study_design_scores_gemma":[0.0011774908,0.00054299395,0.0011451738,0.000041818384,0.000013295038,0.000060344115,0.000055341174,0.000010467704,0.91235274,0.001951254,0.08242743,0.00022165051],"about_ca_topic_score_codex":0.000028100956,"about_ca_topic_score_gemma":0.00013786586,"teacher_disagreement_score":0.081996135,"about_ca_system_score_codex":0.000008238568,"about_ca_system_score_gemma":0.00008843834,"threshold_uncertainty_score":0.53452593},"labels":[],"label_agreement":null},{"id":"W2464321038","doi":"10.3390/v8060172","title":"Lambda gpP-DnaB Helicase Sequestration and gpP-RpoB Associated Effects: On Screens for Auxotrophs, Selection for RifR, Toxicity, Mutagenicity, Plasmid Curing","year":2016,"lang":"en","type":"article","venue":"Viruses","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Ministry of Food and Drug Safety","keywords":"dnaB helicase; Plasmid; Biology; rpoB; Escherichia coli; ColE1; Lysogen; Mutant; Molecular biology; Repressor lexA; Bacteriophage; Helicase; Repressor; Genetics; DNA; Gene; RNA; Gene expression","score_opus":0.018465931023633305,"score_gpt":0.2718685514367824,"score_spread":0.2534026204131491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2464321038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931731,0.00015032264,0.0048125926,0.0005815428,0.0002043471,0.00069707993,0.00030261738,0.000057764464,0.000020631307],"genre_scores_gemma":[0.9972085,0.0003918946,0.0010344062,0.0005490094,0.00043948798,0.00014337366,0.00008862572,0.000036244463,0.00010850999],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892247,0.00004951076,0.00020566421,0.00043669876,0.00007537918,0.00031029346],"domain_scores_gemma":[0.99946016,0.00008628354,0.00012467793,0.0001564433,0.00010707922,0.00006532753],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015991327,0.00020028731,0.00018506365,0.00006667184,0.00015812147,0.000044237073,0.000100349534,0.00042271515,0.0000045970946],"category_scores_gemma":[0.00036339147,0.00015899626,0.00008053258,0.00006420511,0.000067272464,0.000008505355,0.00007331217,0.000058237947,0.000003403833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038766811,0.000071541406,0.00056208,0.00003465367,0.000073504,5.9356654e-7,0.0000039236706,0.000002757416,0.98933107,0.00029195167,0.00078893,0.008451317],"study_design_scores_gemma":[0.0015756182,0.0025817887,0.00075405266,0.000053029362,0.000043302764,0.000006106418,0.0000045928755,0.00008496393,0.9756258,0.00037227187,0.018667292,0.00023116951],"about_ca_topic_score_codex":0.000030530435,"about_ca_topic_score_gemma":0.00021012728,"teacher_disagreement_score":0.017878363,"about_ca_system_score_codex":0.000035721692,"about_ca_system_score_gemma":0.000048061956,"threshold_uncertainty_score":0.64836794},"labels":[],"label_agreement":null},{"id":"W2472613933","doi":"10.1385/1-59259-055-1:419","title":"Assay for DNA Damage Using Immunochemical Recognition and Capillary Electrophoresis","year":2003,"lang":"en","type":"article","venue":"Humana Press eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Cancer Institute; Natural Sciences and Engineering Research Council of Canada; School of Medicine, University of North Carolina at Chapel Hill; Alberta Cancer Foundation","keywords":"DNA damage; DNA repair; Carcinogenesis; Carcinogen; DNA; Cancer research; Mutagen; Biology; Cancer; Molecular biology; Genetics","score_opus":0.04400728566148846,"score_gpt":0.25400577319854833,"score_spread":0.20999848753705988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2472613933","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951322,0.002491578,0.00052870146,0.0000074089426,0.000075142554,0.00034708934,0.000027419761,0.000014425838,0.0013760297],"genre_scores_gemma":[0.99525905,0.00057800824,0.0033533296,0.00010021451,0.00016066259,0.00007044761,0.0001318909,0.0000356931,0.0003106953],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992249,0.000051375715,0.00014513018,0.00029961584,0.000044293676,0.00023467882],"domain_scores_gemma":[0.9996108,0.00000853724,0.000057431374,0.0002244087,0.000056504206,0.000042344946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001255542,0.00013460378,0.00012153415,0.000027835222,0.000097664786,0.000031971555,0.00009020876,0.00027848984,0.0000051644324],"category_scores_gemma":[0.000046691777,0.00013578603,0.00005141551,0.000008312821,0.00010131061,0.0000013040939,0.00006151999,0.00007023722,4.7095372e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056657158,0.000014426315,0.00000298408,0.000019804113,0.000039518753,9.610936e-7,0.000011080083,2.7621905e-7,0.9940879,0.00038687332,0.00019952783,0.0051799994],"study_design_scores_gemma":[0.000418525,0.00017353281,0.000021235315,0.00000875187,0.000034148532,0.000018322473,0.000007507579,0.000021679047,0.91234046,0.0006818414,0.086099274,0.00017473975],"about_ca_topic_score_codex":0.000017783032,"about_ca_topic_score_gemma":0.000009955339,"teacher_disagreement_score":0.08589975,"about_ca_system_score_codex":0.000008193658,"about_ca_system_score_gemma":0.000024524705,"threshold_uncertainty_score":0.5537194},"labels":[],"label_agreement":null},{"id":"W2488411737","doi":"10.1016/b978-0-12-382219-2.00773-0","title":"UmuD and UmuD′ Proteins","year":2012,"lang":"en","type":"book-chapter","venue":"Handbook of Proteolytic Enzymes","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Signal peptide; Signal peptidase; Secretion; Cytoplasm; Escherichia coli; Serine; Biochemistry; Enzyme; Bacteria; Lysine; Transport protein; Membrane protein; Biology; Secretory protein; Membrane; Peptide sequence; Amino acid; Chemistry; Genetics","score_opus":0.011553101565035948,"score_gpt":0.21360198487628584,"score_spread":0.2020488833112499,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2488411737","genre_codex":"review","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.053619713,0.6087189,0.0051638903,0.0013511153,0.0019526333,0.013560684,0.0010042554,0.00029024386,0.31433856],"genre_scores_gemma":[0.20677479,0.03026889,0.029830182,0.00042120068,0.0033241431,0.00015759142,0.0005258963,0.00048326186,0.728214],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985972,0.0000173779,0.00040045433,0.0004912695,0.00016467854,0.00032901872],"domain_scores_gemma":[0.998856,0.000008115707,0.00032149625,0.0005915292,0.000102803046,0.000120030556],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015169733,0.00041343636,0.00046933003,0.00010111987,0.00005679792,0.000018651079,0.00025449428,0.001116602,0.00019854233],"category_scores_gemma":[0.0000347088,0.0003738592,0.00014355559,0.00001531106,0.00045131225,0.0000029478454,0.00036398292,0.00024725165,0.000027573102],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012894272,0.000041447478,0.00002693415,0.00028870688,0.0002177252,0.0000034429981,0.00004087427,2.498049e-7,0.9548185,0.020865789,0.00135036,0.022217039],"study_design_scores_gemma":[0.0004207285,0.0006244636,0.000029673125,0.0003341006,0.00009285469,0.000036829668,0.000004543404,8.461203e-7,0.774916,0.0030758923,0.22006032,0.00040377298],"about_ca_topic_score_codex":0.000009062385,"about_ca_topic_score_gemma":0.00001659386,"teacher_disagreement_score":0.57845,"about_ca_system_score_codex":0.000011838461,"about_ca_system_score_gemma":0.000113886796,"threshold_uncertainty_score":0.9998713},"labels":[],"label_agreement":null},{"id":"W2492996909","doi":"10.1385/0-89603-547-6:201","title":"Harvesting GPI-Anchored Proteins From CHO Cells","year":2003,"lang":"en","type":"book-chapter","venue":"Humana Press eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phosphatidylinositol; Phospholipase C; Chemistry; Phospholipase; Enzyme; Biochemistry; Cell; Membrane; Pi; Cell biology; Biology; Signal transduction","score_opus":0.031578461337069715,"score_gpt":0.22228171238306943,"score_spread":0.19070325104599972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2492996909","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003861919,0.009572048,0.0003672826,0.00003764064,0.0011856913,0.0020434556,0.00061254075,0.00011772201,0.9822017],"genre_scores_gemma":[0.007119294,0.001704528,0.0024774673,0.00052237813,0.0018865988,0.00016613577,0.00078096526,0.0002763813,0.98506624],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979435,0.00003557228,0.0004533843,0.0009546416,0.00018246983,0.00043039912],"domain_scores_gemma":[0.9983436,0.000007601682,0.00034713972,0.0010729822,0.000100250974,0.0001284197],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00009356081,0.0005652296,0.0004582063,0.0000668641,0.00013152287,0.00009737911,0.00053999544,0.0015022045,0.0001160063],"category_scores_gemma":[0.0000156527,0.0005780307,0.00022276482,0.0000042463075,0.00025361957,0.00000162293,0.00037391746,0.00044776703,0.000027872662],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007387293,0.000028054857,4.840543e-7,0.000066532346,0.00039689938,0.0000343215,0.000035788828,0.0000048583756,0.9185332,0.011287723,0.009911217,0.059627064],"study_design_scores_gemma":[0.00029128467,0.00012424418,0.0000020951838,0.000057536585,0.000068572306,0.000003419955,0.0000010723669,0.0000019123372,0.3640183,0.0011577628,0.63384706,0.00042671492],"about_ca_topic_score_codex":0.00015708407,"about_ca_topic_score_gemma":0.00018369046,"teacher_disagreement_score":0.6239359,"about_ca_system_score_codex":0.000022466138,"about_ca_system_score_gemma":0.00006483845,"threshold_uncertainty_score":0.99979407},"labels":[],"label_agreement":null},{"id":"W2508236267","doi":"10.1002/9781119004813.ch99","title":"The Cpx Inner Membrane Stress Response","year":2016,"lang":"en","type":"other","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Inner membrane; Cell envelope; Biology; Cell biology; Response regulator; Membrane protein; DsbA; Proteases; Transmembrane protein; Chaperone (clinical); Signal transduction; Histidine kinase; Biochemistry; Escherichia coli; Membrane; Gene; Mutant","score_opus":0.004417949749031872,"score_gpt":0.22793491722734124,"score_spread":0.22351696747830938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2508236267","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007985311,0.0047426373,0.00022947814,0.005674676,0.0022890635,0.00066919136,0.00050117465,0.00018664745,0.9777218],"genre_scores_gemma":[0.0041572093,0.0040372983,0.00014826789,0.00019541937,0.0008709856,0.000023125927,0.000064453176,0.00024277494,0.9902605],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99901146,0.00009600973,0.0001514584,0.00036353868,0.00008894714,0.0002885996],"domain_scores_gemma":[0.9990136,0.000018426967,0.000107750864,0.00078017125,0.000029095754,0.000050939267],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001666264,0.0002300513,0.0001524907,0.000052218922,0.0000631491,0.00003148423,0.00046724398,0.00087593176,0.0012869588],"category_scores_gemma":[0.0000586458,0.00011971046,0.00008303785,0.000036418234,0.00023180911,2.6016355e-7,0.00025203807,0.00009582615,0.00024029221],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020702674,0.000010509171,0.000005414454,0.0000050893595,0.00006656409,0.0000017360031,6.504997e-7,2.1162109e-8,0.52924925,0.00017707737,0.46608698,0.0041896943],"study_design_scores_gemma":[0.00019143321,0.00009598197,0.000015512825,0.000016675558,0.000008170623,0.0000043338,0.00000453419,1.2504827e-7,0.26405105,0.000016194057,0.7354347,0.00016126214],"about_ca_topic_score_codex":0.000021509608,"about_ca_topic_score_gemma":0.00033157508,"teacher_disagreement_score":0.26934776,"about_ca_system_score_codex":0.0000059504814,"about_ca_system_score_gemma":0.000072730894,"threshold_uncertainty_score":0.999626},"labels":[],"label_agreement":null},{"id":"W2509369257","doi":"10.1371/journal.pone.0161587","title":"The O-Antigen Flippase Wzk Can Substitute for MurJ in Peptidoglycan Synthesis in Helicobacter pylori and Escherichia coli","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Flippase; Lipid II; Peptidoglycan; Biology; Cell envelope; Bacillus subtilis; Escherichia coli; Biogenesis; Biochemistry; ATP-binding cassette transporter; Lipid bilayer; Inner membrane; Bacterial outer membrane; Cell biology; Microbiology; Cell wall; Bacteria; Transporter; Phosphatidylserine; Genetics; Phospholipid","score_opus":0.019273232900633333,"score_gpt":0.2096986096396253,"score_spread":0.19042537673899196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2509369257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996074,0.00032214195,0.000018719898,0.0030387063,0.000056451478,0.00036957208,0.000068184505,0.000008408395,0.000043786582],"genre_scores_gemma":[0.9961368,0.002417739,0.0007050386,0.000116106814,0.00014684438,0.00017433983,0.00001164675,0.000020923366,0.00027057074],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990477,0.00003801494,0.00020591359,0.00031737698,0.00006699106,0.00032400127],"domain_scores_gemma":[0.99949443,0.000049687944,0.000057788642,0.0003000285,0.000042985135,0.000055054974],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018456402,0.00013970079,0.00018057112,0.00004627618,0.00006048773,0.000025550924,0.00018876522,0.00022985338,0.000006509716],"category_scores_gemma":[0.0002108273,0.00009174765,0.000033879856,0.00007787113,0.00015063437,0.0000025850832,0.00010681968,0.00006339097,0.0000027421695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001716183,0.000118807155,0.009942356,0.000015406398,0.00005689666,0.0000016761222,0.000017642526,1.0942148e-7,0.98538995,0.00009022544,0.00003625767,0.0041590347],"study_design_scores_gemma":[0.00064724963,0.00017417633,0.026045058,0.00006305114,0.000020252253,8.7846854e-7,0.000020168656,0.000011910808,0.96515876,0.0001080349,0.007576046,0.00017443532],"about_ca_topic_score_codex":0.0000775706,"about_ca_topic_score_gemma":0.0031598536,"teacher_disagreement_score":0.020231232,"about_ca_system_score_codex":0.000019737883,"about_ca_system_score_gemma":0.00005253198,"threshold_uncertainty_score":0.37413606},"labels":[],"label_agreement":null},{"id":"W2512942679","doi":"10.1099/mic.0.000358","title":"Characterization of a protein–protein interaction within the SigO–RsoA two-subunit σ factor: the σ70 region 2.3-like segment of RsoA mediates interaction with SigO","year":2016,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Protein subunit; Transcription (linguistics); RNA polymerase; Transcription factor; Promoter; DNA; Bacillus subtilis; Biology; Gene; Bacterial transcription; Molecular biology; RNA; Genetics; Gene expression; Bacteria","score_opus":0.00861360294616956,"score_gpt":0.20917251904993142,"score_spread":0.20055891610376186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2512942679","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954418,0.00008198503,0.001798299,0.0014846565,0.00032722778,0.0007529692,0.00007477557,0.000014923647,0.000023373235],"genre_scores_gemma":[0.99899995,0.00008100453,0.00012960137,0.000119799566,0.00014698562,0.000083311636,0.00018674158,0.000024303403,0.00022832358],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986822,0.00024651858,0.00043103832,0.00035729527,0.000058456615,0.00022446165],"domain_scores_gemma":[0.99861115,0.000028729153,0.00065375544,0.0004946819,0.00018430635,0.000027353051],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018435415,0.00022385252,0.00024186814,0.00007104146,0.000078374745,0.0000128304155,0.0003335094,0.00029951162,0.000032072763],"category_scores_gemma":[0.000046051548,0.00010683482,0.00008009171,0.000119207965,0.00043019885,0.000011009751,0.00016142373,0.00015901092,0.0000063335588],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060753553,0.0000723508,0.00023020992,0.000020339317,0.00012973823,7.3017003e-7,0.00013120635,0.0000026745465,0.99459946,0.00008866932,0.00002508602,0.0040919846],"study_design_scores_gemma":[0.00064231094,0.0011113058,0.00042789616,0.000093958784,0.000028174078,0.00006928044,0.00013440596,0.000005627933,0.98697966,0.000029091441,0.010325428,0.00015287171],"about_ca_topic_score_codex":0.00006243327,"about_ca_topic_score_gemma":0.00022011451,"teacher_disagreement_score":0.010300342,"about_ca_system_score_codex":0.00002924998,"about_ca_system_score_gemma":0.00006735494,"threshold_uncertainty_score":0.43565974},"labels":[],"label_agreement":null},{"id":"W2514734133","doi":"10.3389/fmolb.2016.00044","title":"ParB Partition Proteins: Complex Formation and Spreading at Bacterial and Plasmid Centromeres","year":2016,"lang":"en","type":"review","venue":"Frontiers in Molecular Biosciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Centromere; DNA; Biology; Plasmid; Chromosome segregation; DNA-binding protein; Binding site; Genetics; Computational biology; Cell biology; Chromosome; Gene; Transcription factor","score_opus":0.015905225544903465,"score_gpt":0.2560692033731831,"score_spread":0.24016397782827964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2514734133","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.027856778,0.96837026,0.00198137,0.00010113957,0.0006756756,0.0008096875,0.0001345316,0.000013920144,0.00005664675],"genre_scores_gemma":[0.0026914282,0.99241287,0.0044076876,0.00003184893,0.000103869934,0.00006969817,0.00023118002,0.00001979776,0.000031598065],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984235,0.00013400106,0.00036581498,0.00060207595,0.00012658621,0.00034802532],"domain_scores_gemma":[0.9994243,0.000005966283,0.00023916608,0.00022892597,0.000020053545,0.00008161184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019768337,0.00029639748,0.0005262637,0.00018452344,0.00011463131,0.000083591505,0.00023780832,0.00047785454,0.000008146479],"category_scores_gemma":[0.000056595403,0.00022224212,0.000082251885,0.00013955981,0.00047767392,0.000010991083,0.00033678045,0.00008531606,0.0000020529872],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003494964,0.000024706918,0.00009781865,0.0010767869,0.000046052937,0.000007756338,0.000015375077,1.3049016e-7,0.38128695,0.000073352574,0.00083183026,0.61650425],"study_design_scores_gemma":[0.0002948091,0.00022914856,0.000042369877,0.00095842377,0.000048876685,0.00004693527,0.000015605381,0.000015025253,0.026456082,0.00012379754,0.97139925,0.00036966708],"about_ca_topic_score_codex":0.000005155566,"about_ca_topic_score_gemma":0.00001784742,"teacher_disagreement_score":0.9705674,"about_ca_system_score_codex":0.000041468575,"about_ca_system_score_gemma":0.00005787082,"threshold_uncertainty_score":0.90627706},"labels":[],"label_agreement":null},{"id":"W2516409996","doi":"10.1101/073791","title":"High-throughput detection of RNA processing in bacteria","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Simon Fraser University","funders":"Genome Canada; Canadian Institutes of Health Research; Genome British Columbia; Cystic Fibrosis Foundation Therapeutics","keywords":"Throughput; Computer science; Bacteria; Computational biology; Biology; Operating system; Genetics","score_opus":0.0074945812697867886,"score_gpt":0.2066200327268926,"score_spread":0.19912545145710583,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2516409996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99503255,0.0009573127,0.0022979316,0.00012098027,0.0010272017,0.0003612729,0.00014514705,0.000053568565,0.000004013056],"genre_scores_gemma":[0.995692,0.00059270125,0.0029235675,0.000042803575,0.00058619253,0.00007314546,0.00000101405,0.000084967025,0.000003594502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979162,0.000085927364,0.0005604277,0.0008699326,0.00014761668,0.00041985855],"domain_scores_gemma":[0.998236,0.0000050720914,0.0004790465,0.0009213357,0.00027286177,0.00008565546],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002954748,0.00040443684,0.0004685977,0.00019933075,0.000047928457,0.000050123577,0.00045439936,0.0013014443,0.000011451532],"category_scores_gemma":[0.00009693668,0.00038478748,0.00010862277,0.00021111741,0.00017563599,0.000006884709,0.000621847,0.0003288415,0.000006950287],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080563936,0.00007372902,0.000542453,0.00019447894,0.00003634737,0.000004961386,0.0000014817158,0.000004623486,0.9989156,0.000040375617,0.000014182078,0.00009117034],"study_design_scores_gemma":[0.00051294424,0.00014764631,0.030426957,0.0002471109,0.000028804241,2.1798515e-8,7.4242206e-7,0.000012772985,0.9651032,0.0000074856084,0.0030763014,0.00043599145],"about_ca_topic_score_codex":0.0000421559,"about_ca_topic_score_gemma":0.000015048644,"teacher_disagreement_score":0.03381241,"about_ca_system_score_codex":0.00007344838,"about_ca_system_score_gemma":0.0003420276,"threshold_uncertainty_score":0.99999505},"labels":[],"label_agreement":null},{"id":"W2519154859","doi":"10.1128/mbio.01397-16","title":"Klebsiella pneumoniae Siderophores Induce Inflammation, Bacterial Dissemination, and HIF-1α Stabilization during Pneumonia","year":2016,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Klebsiella pneumoniae; Microbiology; Siderophore; Pneumonia; Klebsiella pneumonia; Bacterial pneumonia; Inflammation; Bacteria; Enterobacteriaceae; Biology; Pseudomonas aeruginosa; Medicine; Immunology; Antibiotics; Escherichia coli","score_opus":0.004121260932520255,"score_gpt":0.20992153333228203,"score_spread":0.20580027239976179,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2519154859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99774253,0.000117000825,0.00013384424,0.0014540022,0.0002522133,0.00016109848,0.000029075007,0.000028359033,0.00008184639],"genre_scores_gemma":[0.99820256,0.0005826944,0.00013030722,0.000013599198,0.00038355537,0.000016141508,0.00006634151,0.000022734757,0.00058208825],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906206,0.000040128143,0.00023445407,0.00036432515,0.00008506947,0.00021394056],"domain_scores_gemma":[0.9994415,0.000012706857,0.00010043943,0.0002812208,0.00010103971,0.000063083906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009003462,0.00015716361,0.00012095274,0.00005788214,0.00011017182,0.00004980666,0.000125867,0.00028621015,0.000046677134],"category_scores_gemma":[0.00013240609,0.00012182099,0.000030603584,0.000083988874,0.00011993547,0.000008171574,0.0001530041,0.00004499589,0.000011120849],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040847543,0.000014760492,0.003826861,0.000013591851,0.000014937579,0.0000012173524,0.000035772915,4.3579132e-7,0.98853195,0.00010058736,0.000089419154,0.0073296074],"study_design_scores_gemma":[0.0003739487,0.00012544125,0.055645183,0.000022945696,0.000008927665,0.000016266726,0.00001797887,0.0000023126029,0.9325149,0.00015678228,0.0109302085,0.00018509389],"about_ca_topic_score_codex":0.0000059779095,"about_ca_topic_score_gemma":0.00006706121,"teacher_disagreement_score":0.056017052,"about_ca_system_score_codex":0.000017939978,"about_ca_system_score_gemma":0.000029324612,"threshold_uncertainty_score":0.49677157},"labels":[],"label_agreement":null},{"id":"W2519749472","doi":"10.1074/jbc.m116.740381","title":"The C-terminal Helix of Pseudomonas aeruginosa Elongation Factor Ts Tunes EF-Tu Dynamics to Modulate Nucleotide Exchange","year":2016,"lang":"fr","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"Natural Sciences and Engineering Research Council of Canada; Compute Canada; Canada Foundation for Innovation; Alberta Innovates; Alberta Innovates - Technology Futures; Western Canada Research Grid","keywords":"Nucleotide; EF-Tu; Elongation factor; Biology; Pseudomonas aeruginosa; Escherichia coli; Nucleic acid sequence; Biochemistry; Genetics; Bacteria; DNA; RNA; Gene; Transfer RNA","score_opus":0.013529037594439285,"score_gpt":0.24029589333022508,"score_spread":0.22676685573578578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2519749472","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9842991,0.005511106,0.0007062624,0.008011712,0.0009384988,0.00014928065,0.00026487283,0.0000065950253,0.00011255249],"genre_scores_gemma":[0.98440653,0.011976505,0.0008150744,0.00010288115,0.0011548377,0.0000045578836,0.000019879411,0.00002161385,0.0014980957],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978733,0.00011760454,0.00090755144,0.00036908194,0.00021840796,0.0005140269],"domain_scores_gemma":[0.99795294,0.00010833937,0.00082609244,0.00041845965,0.0004472838,0.0002469053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003491092,0.00033912767,0.00047948377,0.000036053214,0.00011192517,0.00003891342,0.0007075892,0.0010157204,0.00013040609],"category_scores_gemma":[0.0005071345,0.00018764817,0.0003577003,0.00013275353,0.0006085124,0.000009534206,0.0003601494,0.00028961324,0.000009500284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004588114,0.00012663075,0.001542972,0.00006987303,0.00012257588,0.00003493713,0.000015031293,0.0000035894511,0.90144414,0.00004623999,0.00037473833,0.09576046],"study_design_scores_gemma":[0.00069126365,0.0012539648,0.005260742,0.00019692015,0.00004480867,0.00042354368,0.000059806804,0.000020564677,0.9466507,0.0003539965,0.044754513,0.00028918782],"about_ca_topic_score_codex":0.0000071406785,"about_ca_topic_score_gemma":0.00001450383,"teacher_disagreement_score":0.09547126,"about_ca_system_score_codex":0.00009800969,"about_ca_system_score_gemma":0.00012230915,"threshold_uncertainty_score":0.78341657},"labels":[],"label_agreement":null},{"id":"W2520135608","doi":"10.1074/jbc.m116.753327","title":"Structural Analysis and Inhibition of TraE from the pKM101 Type IV Secretion System","year":2016,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Plasmid; Complementation; Chemistry; Secretion; Agrobacterium tumefaciens; Heterologous; Agrobacterium; Cell biology; Molecular biology; Biology; Biochemistry; DNA; Phenotype; Transgene; Gene","score_opus":0.010667902866904513,"score_gpt":0.21507988113384574,"score_spread":0.20441197826694124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2520135608","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99869525,0.0006023637,0.0002572954,0.0002668915,0.00006660422,0.000027914411,0.000047903868,0.0000030928015,0.000032659034],"genre_scores_gemma":[0.9990159,0.00042794074,0.00019030515,0.00002278125,0.00029626448,4.565348e-7,0.000029766994,0.0000032830324,0.000013289533],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936134,0.000041341355,0.00029642595,0.00013709303,0.000070422146,0.00009336733],"domain_scores_gemma":[0.99935675,0.00002926848,0.0003042548,0.00014090723,0.00012661093,0.00004219332],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000149142,0.00009003242,0.00020197913,0.000014538642,0.00002762733,0.000008215767,0.00012495581,0.0003083809,0.000037994956],"category_scores_gemma":[0.00009909173,0.000040676954,0.00011877738,0.00009932206,0.00017142935,0.000002133219,0.00006350732,0.0000778474,3.3627367e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016220073,0.000007766477,0.008566338,0.000006295279,0.00016816198,0.000001636717,0.000003973527,8.719477e-7,0.98942924,0.000008265979,0.000030728672,0.0016145303],"study_design_scores_gemma":[0.0003275304,0.00027785404,0.03392839,0.0000252411,0.000110255845,0.00003333685,0.000059487684,0.000011527426,0.9646197,0.0000925272,0.00044366647,0.000070510796],"about_ca_topic_score_codex":0.000005659026,"about_ca_topic_score_gemma":0.0000022822794,"teacher_disagreement_score":0.025362054,"about_ca_system_score_codex":0.000010677751,"about_ca_system_score_gemma":0.000020195155,"threshold_uncertainty_score":0.23785158},"labels":[],"label_agreement":null},{"id":"W2520193862","doi":"10.1186/s12896-016-0298-1","title":"A novel set of vectors for Fur-controlled protein expression under iron deprivation in Escherichia coli","year":2016,"lang":"en","type":"article","venue":"BMC Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; Keio University","keywords":"Biology; Multiple cloning site; PBR322; Expression vector; Escherichia coli; Plasmid; Molecular biology; Gene; Open reading frame; Genetics; Peptide sequence; Recombinant DNA","score_opus":0.01573143647116063,"score_gpt":0.24119397795256892,"score_spread":0.2254625414814083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2520193862","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8967029,0.00013807857,0.10058685,0.0013218216,0.00011619767,0.0010367228,0.000046771842,0.0000367827,0.000013869374],"genre_scores_gemma":[0.9770696,0.00007288143,0.02227176,0.00004338155,0.000081932514,0.00028006305,0.000033983604,0.000028368704,0.00011803744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866253,0.000041099,0.0004163983,0.0004785874,0.000071416034,0.00032995868],"domain_scores_gemma":[0.9991357,0.000027917968,0.00024180644,0.00049721845,0.00006582788,0.00003157302],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00021283688,0.00019930086,0.0003475161,0.00018697447,0.000033658587,0.0000051687416,0.0003170972,0.0013218748,0.0000108743725],"category_scores_gemma":[0.00030576624,0.00014401255,0.000105390405,0.00017511078,0.0002221673,0.0000037374318,0.00019422676,0.00009823211,0.0000024266535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010492522,0.00009410994,0.00041389157,0.000029826513,0.00001697203,1.875333e-7,0.0000044608587,0.000007578887,0.9946317,0.0017736695,0.0000297176,0.001948636],"study_design_scores_gemma":[0.006280599,0.00069492596,0.0017341615,0.000047085898,0.000010798215,0.0000028848356,0.000030966617,0.000035169985,0.9870455,0.0006473412,0.0032727825,0.00019773799],"about_ca_topic_score_codex":0.000017843087,"about_ca_topic_score_gemma":0.0001815988,"teacher_disagreement_score":0.08036668,"about_ca_system_score_codex":0.000028288914,"about_ca_system_score_gemma":0.00009272496,"threshold_uncertainty_score":0.9999746},"labels":[],"label_agreement":null},{"id":"W2523177517","doi":"10.1128/aem.02479-16","title":"Two Outer Membrane Proteins Contribute to Caulobacter crescentus Cellular Fitness by Preventing Intracellular S-Layer Protein Accumulation","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Government of Canada; U.S. Department of Energy","keywords":"Caulobacter crescentus; Cell biology; S-layer; Bacterial outer membrane; Biology; Cytoplasm; Membrane protein; Transport protein; Protein subcellular localization prediction; Escherichia coli; Biochemistry; Gene; Membrane; Cell cycle","score_opus":0.0054547501203558255,"score_gpt":0.19626667680937093,"score_spread":0.19081192668901512,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2523177517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99556214,0.00025681886,0.0021796448,0.00057077,0.00009204714,0.0009784779,0.00030266953,0.000018574587,0.000038865794],"genre_scores_gemma":[0.997306,0.000118915006,0.0007061701,0.00028521588,0.0001534148,0.00012302531,0.0006964202,0.000033474866,0.0005774028],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985216,0.00005369374,0.00028426762,0.0006403726,0.00004338821,0.00045662565],"domain_scores_gemma":[0.9994614,0.00000654466,0.00010540347,0.00030945655,0.000007096739,0.000110091045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012866216,0.00027413847,0.0002351789,0.00003805679,0.00009584871,0.000019585164,0.00017736139,0.00037664233,0.00009197818],"category_scores_gemma":[0.000007319079,0.0002093216,0.00005197172,0.00003375401,0.00017930573,0.000005723686,0.00034258713,0.000090057016,0.00005373558],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013137698,0.00008336526,0.00045544456,0.00001013464,0.00005022427,0.0000024490416,0.000012810542,0.0000016920785,0.99482775,0.000050836345,0.00013496354,0.0042389478],"study_design_scores_gemma":[0.0013386855,0.0002192696,0.00023682934,0.000013948619,0.000017738557,0.000018691739,0.000013699429,0.0000017162948,0.9243744,0.00002890067,0.073433466,0.00030267355],"about_ca_topic_score_codex":0.00001090372,"about_ca_topic_score_gemma":0.000009100028,"teacher_disagreement_score":0.07329851,"about_ca_system_score_codex":0.00003080326,"about_ca_system_score_gemma":0.000009848236,"threshold_uncertainty_score":0.8535887},"labels":[],"label_agreement":null},{"id":"W2528884833","doi":"10.1007/5584_2016_52","title":"Controlling Autolysis During Flagella Insertion in Gram-Negative Bacteria","year":2016,"lang":"en","type":"review","venue":"Advances in experimental medicine and biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Flagellum; Peptidoglycan; Autolysis (biology); Lytic cycle; Lysis; Lysin; Bacteria; Microbiology; Biology; Protein filament; Flagellin; Bacterial cell structure; Cell wall; Lysozyme; Cell biology; Biochemistry; Enzyme; Bacteriophage; Virus; Genetics; Escherichia coli; Gene","score_opus":0.021009995239026295,"score_gpt":0.35145459965021675,"score_spread":0.33044460441119045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2528884833","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06725515,0.93164295,0.000010971923,0.000057508314,0.00046414678,0.00040826833,0.000019425446,0.0000100841735,0.00013148847],"genre_scores_gemma":[0.06657874,0.932493,0.00014860593,0.000049238377,0.0003967492,0.00012960877,0.00014337743,0.000025935999,0.00003476093],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99806106,0.00019026463,0.00064369483,0.00069202523,0.00004365839,0.00036931792],"domain_scores_gemma":[0.9993663,0.000053539738,0.000257082,0.00024717406,0.000017667635,0.000058280333],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015335954,0.0003983382,0.0011507358,0.00026336545,0.000040940788,0.0000060400307,0.00020579134,0.00069923117,0.00003190801],"category_scores_gemma":[0.000088349676,0.0002605244,0.00009441995,0.00016620348,0.0004488346,0.0000076307515,0.00019864259,0.00019170852,0.0000037267387],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000129555,0.00004978975,0.00008289847,0.00040633653,0.000044062173,0.000009998786,0.000040736544,1.222235e-7,0.594846,0.00008163923,0.0000033648646,0.40430546],"study_design_scores_gemma":[0.0026179026,0.0012893334,0.000051778083,0.004107513,0.00005056732,0.000073237396,0.00017707393,0.0000014135004,0.06896094,0.00022226034,0.92188805,0.00055994926],"about_ca_topic_score_codex":0.000029714247,"about_ca_topic_score_gemma":0.000079579026,"teacher_disagreement_score":0.92188466,"about_ca_system_score_codex":0.000054885502,"about_ca_system_score_gemma":0.00003656597,"threshold_uncertainty_score":0.9999847},"labels":[],"label_agreement":null},{"id":"W2532347595","doi":"10.1074/jbc.m116.760447","title":"Identification of Two Phosphate Starvation-induced Wall Teichoic Acid Hydrolases Provides First Insights into the Degradative Pathway of a Key Bacterial Cell Wall Component","year":2016,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; McMaster University","funders":"British Columbia Knowledge Development Fund; National Institutes of Health; National Institute of General Medical Sciences; Bundesinstitut für Sportwissenschaft; McMaster University","keywords":"Teichoic acid; Peptidoglycan; Bacillus subtilis; Biochemistry; Cell envelope; Cell wall; Biology; Mutant; Periplasmic space; Cell biology; Chemistry; Bacteria; Escherichia coli; Gene; Genetics","score_opus":0.014006772375814519,"score_gpt":0.22475258497507647,"score_spread":0.21074581259926195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2532347595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984,0.0006440171,0.00017392954,0.00046976758,0.00012195668,0.00014062475,0.000023111117,0.0000045124993,0.000022115362],"genre_scores_gemma":[0.99850947,0.0008659009,0.0003111341,0.000035836147,0.0001887551,0.0000076743145,0.000033279513,0.000009712203,0.00003825997],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847126,0.000107953776,0.0008479446,0.0002444353,0.00015852493,0.0001699048],"domain_scores_gemma":[0.9979954,0.00009137405,0.0011918956,0.0003029162,0.00035109592,0.00006737045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003768957,0.00018957218,0.0003215769,0.000028267797,0.00006036829,0.00001246483,0.0004937098,0.0003962041,0.000034516146],"category_scores_gemma":[0.00032570612,0.00009512802,0.0001794277,0.00009523032,0.00028416404,0.000009777809,0.00014302341,0.00016151236,0.0000013678136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000431403,0.00020538314,0.0008282132,0.000036514546,0.0000722078,0.0000018977559,0.00009309231,0.0000028053798,0.99702877,0.000011693999,0.00002648825,0.0012615029],"study_design_scores_gemma":[0.0009806197,0.00069516944,0.0019599975,0.00005146888,0.000025945565,0.000009743291,0.000054510532,0.000008536731,0.9926893,0.00038039387,0.0030098117,0.00013449341],"about_ca_topic_score_codex":0.000015268659,"about_ca_topic_score_gemma":0.000012168199,"teacher_disagreement_score":0.004339488,"about_ca_system_score_codex":0.000034350545,"about_ca_system_score_gemma":0.0001220856,"threshold_uncertainty_score":0.38792083},"labels":[],"label_agreement":null},{"id":"W2543257423","doi":"10.1016/j.bbalip.2016.10.008","title":"Glycolipid substrates for ABC transporters required for the assembly of bacterial cell-envelope and cell-surface glycoconjugates","year":2016,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Glycoconjugate; Glycolipid; Cell biology; Biology; Glycosyltransferase; Transporter; Biochemistry; Cell; Cell envelope; Chemistry; Gene; Escherichia coli","score_opus":0.014463781969372619,"score_gpt":0.26190860712857184,"score_spread":0.24744482515919922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2543257423","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5354334,0.45916253,0.00037441065,0.00023124382,0.0005668066,0.0020601796,0.0020854648,0.000018325516,0.0000676178],"genre_scores_gemma":[0.31975716,0.67731965,0.0010723451,0.0000654934,0.00031025126,0.00015180034,0.0011642425,0.00009521021,0.00006386982],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99681556,0.00021022758,0.0010816817,0.001152101,0.00010679981,0.00063364784],"domain_scores_gemma":[0.9976112,0.00024243939,0.0010394485,0.00079104357,0.00017590009,0.00013992017],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00037787284,0.0008600651,0.0017287169,0.00010750554,0.00014912106,0.000042615437,0.0007677204,0.0015788191,0.000006587679],"category_scores_gemma":[0.000030695195,0.00058270845,0.00080461684,0.00014616987,0.0011121708,0.000009061008,0.0002472851,0.00021079462,0.0000010479139],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044669534,0.00014723677,6.9362125e-7,0.0036109078,0.0003977655,4.8159654e-7,0.000030124716,1.951555e-7,0.9830395,0.00007371969,0.00021100219,0.012041692],"study_design_scores_gemma":[0.0012819594,0.0018643789,0.000005884438,0.00032551764,0.00083848234,0.000005207095,0.000026528272,0.0000025497652,0.8085598,0.000059668266,0.1864521,0.0005779274],"about_ca_topic_score_codex":0.000011377147,"about_ca_topic_score_gemma":0.0000037264065,"teacher_disagreement_score":0.2181571,"about_ca_system_score_codex":0.000011723349,"about_ca_system_score_gemma":0.0003190212,"threshold_uncertainty_score":0.99971735},"labels":[],"label_agreement":null},{"id":"W2543777082","doi":"10.1101/082750","title":"The molecular mechanism of the type IVa pilus motors","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McMaster University; University of Toronto","funders":"Canadian Institutes of Health Research; Hospital for Sick Children","keywords":"Pilus; Walker motifs; ATPase; Cell biology; Protein structure; Biofilm; Biophysics; Biology; Nucleotide; Chemistry; Virulence; Biochemistry; Bacteria; Gene; Genetics; ATP hydrolysis; Enzyme","score_opus":0.006241565802428471,"score_gpt":0.19645512970605356,"score_spread":0.1902135639036251,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2543777082","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99282867,0.0020526634,0.00076204824,0.00082702126,0.0027284222,0.0005880505,0.00014580287,0.000043491797,0.000023825136],"genre_scores_gemma":[0.9979573,0.0009370906,0.00043585658,0.00014818796,0.00036325786,0.000051554372,2.7388364e-7,0.00008413183,0.000022338576],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99810606,0.00014574511,0.00040760505,0.00066382077,0.00023756037,0.00043920573],"domain_scores_gemma":[0.9969124,0.00001592561,0.0004295021,0.0021338223,0.00041666222,0.00009167437],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035644817,0.00039259528,0.00030275545,0.000051337203,0.00017303845,0.00006274824,0.0013345128,0.0009741668,0.000007879603],"category_scores_gemma":[0.00023610561,0.00023819186,0.0002216222,0.0001944123,0.00034006473,0.000002034018,0.001616031,0.00036816296,0.000011015655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038032395,0.000029380977,0.00018540154,0.00003582979,0.00014897199,0.0000027247183,8.223244e-7,0.0000024493363,0.9922339,0.007140762,0.00017620208,0.000005533222],"study_design_scores_gemma":[0.00021741065,0.0001187394,0.002466262,0.00007581062,0.000058940062,2.9214467e-8,8.0277016e-7,0.000008837728,0.96726,0.000080376034,0.029393036,0.00031978101],"about_ca_topic_score_codex":0.000011676162,"about_ca_topic_score_gemma":0.0000025827642,"teacher_disagreement_score":0.029216833,"about_ca_system_score_codex":0.000040634528,"about_ca_system_score_gemma":0.0004061779,"threshold_uncertainty_score":0.97131824},"labels":[],"label_agreement":null},{"id":"W2548486833","doi":"10.1111/mmi.13569","title":"ProP‐ProP and ProP‐phospholipid interactions determine the subcellular distribution of osmosensing transporter ProP in <scp><i>E</i></scp><i>scherichia coli</i>","year":2016,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Subcellular localization; Cytoplasm; Biochemistry; Cell biology; Transmembrane domain; Transporter; Biophysics; Amino acid; Gene","score_opus":0.004872211245973774,"score_gpt":0.19185892522255046,"score_spread":0.18698671397657668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2548486833","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944965,0.0010059535,0.0026108997,0.0007676956,0.00021083788,0.00066674326,0.00015844857,0.000019130843,0.00006373812],"genre_scores_gemma":[0.9983947,0.00030602256,0.00045541793,0.00023749519,0.00007464762,0.00004412088,0.000256701,0.000037471393,0.00019339766],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998157,0.00018045768,0.00050175824,0.00061528094,0.000056133955,0.00048934255],"domain_scores_gemma":[0.99903077,0.00003545321,0.00022435765,0.0005131265,0.00013271884,0.00006354997],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023378455,0.00030994497,0.00035195035,0.000060000708,0.000078811376,0.000018105637,0.0002800907,0.00046068174,0.000005801694],"category_scores_gemma":[0.00012887844,0.00019947629,0.00012157667,0.00018549485,0.0006234262,0.000006867261,0.00017447399,0.0002147121,0.0000050368644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007872756,0.000106374646,0.001274619,0.000034548673,0.00006148056,0.000020396794,0.000048940132,0.0000019880629,0.9955379,0.00009110277,0.00018611058,0.0025578379],"study_design_scores_gemma":[0.0008576431,0.0004708495,0.0018283472,0.00006094321,0.00004235948,0.00020266896,0.00004209224,0.000007852359,0.92856234,0.00007381881,0.067703284,0.00014780261],"about_ca_topic_score_codex":0.000030225201,"about_ca_topic_score_gemma":0.00009031479,"teacher_disagreement_score":0.067517176,"about_ca_system_score_codex":0.000027194013,"about_ca_system_score_gemma":0.000085808126,"threshold_uncertainty_score":0.8134407},"labels":[],"label_agreement":null},{"id":"W2550274675","doi":"10.5539/jmbr.v6n1p111","title":"Architecture of Bacterial Promoters; The case of the Escherichia coli ogt Promoter","year":2016,"lang":"en","type":"article","venue":"Journal of Molecular Biology Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Promoter; Transcription (linguistics); RNA polymerase; Molecular biology; Activator (genetics); RNA polymerase II; Biology; Transcription factor; Sigma factor; Response element; Binding site; DNA; Escherichia coli; Gene; Gene expression; Genetics","score_opus":0.017246721177511016,"score_gpt":0.31239422055776384,"score_spread":0.2951474993802528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2550274675","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99381274,0.0005061594,0.0007877408,0.0041797278,0.00029758635,0.00031445737,0.000036764388,0.0000014627537,0.00006335909],"genre_scores_gemma":[0.9987285,0.00013522134,0.0007361489,0.000053471493,0.00024111946,0.000006214514,0.0000024960311,0.000017927354,0.000078875164],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99780583,0.00094477384,0.0005070746,0.00022077,0.00017797507,0.0003435442],"domain_scores_gemma":[0.99823326,0.000063234846,0.00040878978,0.0006320531,0.00059831195,0.00006432488],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015474075,0.00014485909,0.00027662737,0.00010804358,0.00008439864,0.000010568893,0.0008764412,0.00042299298,0.000037283156],"category_scores_gemma":[0.00059096015,0.00006150367,0.00023980845,0.00023028579,0.0012746974,0.0000024595386,0.0005329705,0.00039385745,0.0000010513162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039415338,0.000084384286,0.00025725507,0.000017787776,0.00015875028,0.000052205785,0.000044514545,0.0000011335853,0.988817,0.00023335002,0.00022252103,0.009716938],"study_design_scores_gemma":[0.00074091525,0.0018865766,0.00045951622,0.000043334247,0.00002506272,0.00097166526,0.00004050087,8.7989594e-7,0.98510736,0.0013111893,0.009333107,0.00007987432],"about_ca_topic_score_codex":0.000016850856,"about_ca_topic_score_gemma":0.000029673198,"teacher_disagreement_score":0.009637064,"about_ca_system_score_codex":0.000013984962,"about_ca_system_score_gemma":0.00029281917,"threshold_uncertainty_score":0.46966755},"labels":[],"label_agreement":null},{"id":"W2551087326","doi":"10.1139/cjm-2016-0576","title":"The essential activities of the bacterial sigma factor","year":2016,"lang":"en","type":"review","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; University of California, San Francisco","keywords":"Sigma factor; Promoter; RNA polymerase; Biology; Transcription (linguistics); General transcription factor; DNA; RNA polymerase II; Transcription factor II E; Transcription preinitiation complex; RNA polymerase II holoenzyme; Transcription factor; Transcription factor II D; Gene; Cell biology; Genetics; Bacterial transcription; RNA; Gene expression","score_opus":0.009693466570219541,"score_gpt":0.2295352608234205,"score_spread":0.21984179425320094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2551087326","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.016758503,0.977388,0.000009200635,0.00022729313,0.004497104,0.00021500837,0.0008598663,0.0000010545502,0.000043945107],"genre_scores_gemma":[0.008950698,0.9892689,0.000017459766,0.000029634137,0.0012425692,0.0000034123864,0.00003486385,0.000032960517,0.00041947575],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984106,0.00030991776,0.0006602417,0.0001963711,0.000034879668,0.00038802452],"domain_scores_gemma":[0.99822134,0.000059874994,0.0010038455,0.00046775225,0.00012333701,0.00012387968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020206344,0.00027181557,0.0007355926,0.00010341972,0.00015908976,0.000029569363,0.0011748542,0.00090353505,0.00008390847],"category_scores_gemma":[0.00014265887,0.00012602042,0.00061802263,0.00007581991,0.00088317186,0.000001947045,0.00013295149,0.00030850372,0.0000034339337],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034587727,0.000008511924,0.000006972989,0.0002344793,0.00051881716,0.0000066064617,0.000013601327,6.1418966e-8,0.6443082,0.00007345424,0.0050758165,0.34971887],"study_design_scores_gemma":[0.0001579725,0.00019205821,0.0000051450984,0.00053346716,0.00010380373,0.00055256684,0.0000075382463,3.6240866e-9,0.040592216,0.000014047085,0.9576965,0.00014466407],"about_ca_topic_score_codex":0.00007636511,"about_ca_topic_score_gemma":0.004371996,"teacher_disagreement_score":0.9526207,"about_ca_system_score_codex":0.000051909323,"about_ca_system_score_gemma":0.003117425,"threshold_uncertainty_score":0.696889},"labels":[],"label_agreement":null},{"id":"W2554420743","doi":"10.1101/087965","title":"The type IVa pilus machinery is pre-installed during cell division","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; McMaster University","funders":"","keywords":"Pilus; Cell envelope; Bacterial outer membrane; Periplasmic space; Cell biology; Sulfolobus acidocaldarius; Inner membrane; Biology; Peptidoglycan; MreB; Biochemistry; Cell; Cell wall; Escherichia coli; Cytoskeleton","score_opus":0.005509943721002496,"score_gpt":0.20266629442580125,"score_spread":0.19715635070479876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2554420743","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99307555,0.0032240232,0.0002641789,0.0006023674,0.0019370168,0.0005420411,0.00019894121,0.000114313334,0.000041543004],"genre_scores_gemma":[0.99435496,0.0038891926,0.00044984836,0.00014161962,0.00083596964,0.00006413338,0.0000012721154,0.00013498252,0.00012801714],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973634,0.00011552928,0.00048596054,0.0011118465,0.00025733284,0.0006659629],"domain_scores_gemma":[0.9970479,0.000019375022,0.00038579924,0.0020363347,0.0003322464,0.000178345],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00033077612,0.00057542796,0.000380453,0.00009453523,0.00034909355,0.00019094635,0.0010223744,0.0012180307,0.00002611194],"category_scores_gemma":[0.000119437595,0.00041891678,0.00020130511,0.00016681783,0.0002123056,0.000005098196,0.0019362605,0.0005259599,0.000054568278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001407047,0.00006337805,0.0010962934,0.00009690106,0.0001127138,0.00000966372,0.0000024657643,0.0000040420573,0.99787164,0.000046460715,0.0005439416,0.000011784086],"study_design_scores_gemma":[0.00057162857,0.00016123307,0.023860669,0.000094654126,0.00004370423,3.625517e-8,7.4543976e-7,0.00002026007,0.93051517,0.000007304844,0.04412779,0.0005968202],"about_ca_topic_score_codex":0.000014311051,"about_ca_topic_score_gemma":0.0000035507628,"teacher_disagreement_score":0.0673565,"about_ca_system_score_codex":0.000068516,"about_ca_system_score_gemma":0.0003034876,"threshold_uncertainty_score":0.99982625},"labels":[],"label_agreement":null},{"id":"W25565677","doi":"10.1002/pro.2636","title":"正常胎盤,卵膜,臍帯の組織所見 (特集 胎児死亡と胎盤病理)","year":2011,"lang":"en","type":"article","venue":"産科と婦人科","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Computer science","score_opus":0.015590000662283393,"score_gpt":0.20693933452785268,"score_spread":0.1913493338655693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W25565677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97833747,0.00043434094,0.00033867802,0.00018373392,0.00051755714,0.00013508307,0.00001542971,0.00004331897,0.019994382],"genre_scores_gemma":[0.99503875,0.00019857533,0.0024298115,0.0003604736,0.0003248531,0.000013380071,0.000049807906,0.000024545297,0.0015597976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991176,0.000026230251,0.00016301844,0.00033986833,0.00006533938,0.00028793098],"domain_scores_gemma":[0.99933803,0.0000024535982,0.000055440756,0.00047751205,0.00005024585,0.00007631026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009332148,0.00015094611,0.00012493084,0.00003894431,0.00005488455,0.000012893553,0.00028264758,0.00038031948,0.000282531],"category_scores_gemma":[0.00003258527,0.00013663621,0.00007755505,0.00007751316,0.00011004302,0.0000015933686,0.00018819004,0.00010399345,0.0001567288],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006219857,0.00006955949,0.0015670507,0.0000061730757,0.000038811955,0.000006806538,0.00003779705,2.2534115e-7,0.9837478,0.00077523343,0.0038232123,0.009865122],"study_design_scores_gemma":[0.0002805891,0.00033799902,0.0058228895,0.0000035305366,0.000012597183,0.00002110327,0.000026294236,0.0000032151634,0.7162917,0.00030490287,0.276702,0.00019318081],"about_ca_topic_score_codex":0.000035669655,"about_ca_topic_score_gemma":0.00004593167,"teacher_disagreement_score":0.2728788,"about_ca_system_score_codex":0.0000056191193,"about_ca_system_score_gemma":0.00003730469,"threshold_uncertainty_score":0.5571863},"labels":[],"label_agreement":null},{"id":"W2558281474","doi":"10.1107/s2053273314085003","title":"Biophysical characterization and crystallization of the membrane protein Etk","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section A Foundations and Advances","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Crystallization; Autophosphorylation; Membrane; Chemistry; Ultracentrifuge; Chromatography; Analytical Ultracentrifugation; Biochemistry; Crystallography; Protein kinase A; Kinase; Organic chemistry","score_opus":0.004417675334455389,"score_gpt":0.2108875930931631,"score_spread":0.2064699177587077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2558281474","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98867434,0.000045451092,0.010229628,0.00063407276,0.00011499501,0.00020664494,0.000012053783,0.000012306242,0.00007049943],"genre_scores_gemma":[0.99848115,0.00070313795,0.00044955814,0.000054086355,0.000108231325,0.000020770589,0.00009244543,0.000008610915,0.00008200486],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994243,0.000052501666,0.0001533398,0.00021567623,0.00006456356,0.000089620335],"domain_scores_gemma":[0.999601,0.0000068798763,0.00013098474,0.00016351572,0.00007043376,0.00002719042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000077616605,0.000093381735,0.00009235172,0.000058815567,0.00017199831,0.000032727676,0.00006941345,0.00011767247,0.000005406486],"category_scores_gemma":[0.00004788945,0.000071231196,0.000034757704,0.00021176336,0.0002653873,0.00001582504,0.000068001376,0.000055925462,2.5709133e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001839317,0.000029286895,0.00065749855,0.000023722967,0.000012345564,1.2601939e-8,0.000010501648,0.000002478001,0.9944395,0.0009294318,0.0000017167367,0.0038751394],"study_design_scores_gemma":[0.00065285864,0.0006064695,0.04870143,0.00004572963,0.000041900574,0.000018282748,0.0000598331,0.0004554756,0.27836967,0.0010852818,0.6696812,0.00028190747],"about_ca_topic_score_codex":0.0000055938385,"about_ca_topic_score_gemma":0.000049442642,"teacher_disagreement_score":0.7160698,"about_ca_system_score_codex":0.000002030383,"about_ca_system_score_gemma":0.000012444077,"threshold_uncertainty_score":0.2904724},"labels":[],"label_agreement":null},{"id":"W2559646620","doi":"10.1107/s2053273314095710","title":"Bacterial Effector Kinases","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section A Foundations and Advances","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of Regina; Western University; University of Saskatchewan","funders":"","keywords":"Kinase; Effector; Cell biology; Protein kinase domain; Biology; Ubiquitin; Phosphorylation; Protein-Serine-Threonine Kinases; Biochemistry; Chemistry; Protein kinase A; Gene","score_opus":0.005185134638420122,"score_gpt":0.230683822064981,"score_spread":0.22549868742656087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2559646620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99569064,0.00020781829,0.002401568,0.00039275567,0.0006366748,0.00013349247,0.00001536136,0.00004034911,0.00048133841],"genre_scores_gemma":[0.9967305,0.0013027373,0.0009805554,0.000104671926,0.00056662486,0.000029477285,0.000199231,0.000013127719,0.00007306025],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992639,0.000054923683,0.00014477695,0.00031565572,0.000057554058,0.00016319343],"domain_scores_gemma":[0.9995957,0.000019247074,0.00007509223,0.00019832495,0.00005331355,0.00005833821],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010206866,0.00013133645,0.00011297592,0.00009676202,0.0002201073,0.00007426533,0.00008695619,0.00015682248,0.00003874517],"category_scores_gemma":[0.000077619145,0.00011914785,0.000055699562,0.00015427895,0.00019113324,0.000012693967,0.000063200525,0.000067956746,5.2378635e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043971115,0.00003390269,0.00090944406,0.000010729,0.000020929476,1.2049618e-7,0.000004095785,0.0000019346014,0.98839295,0.00022019126,0.00011794407,0.010243764],"study_design_scores_gemma":[0.00039010946,0.0005742449,0.0065525346,0.0000067470605,0.000016199581,0.000019609986,0.00001875158,0.000019711659,0.00983231,0.0005057462,0.9818902,0.00017385578],"about_ca_topic_score_codex":0.000010531986,"about_ca_topic_score_gemma":0.0001803249,"teacher_disagreement_score":0.98177224,"about_ca_system_score_codex":0.0000032887701,"about_ca_system_score_gemma":0.0000134658185,"threshold_uncertainty_score":0.48587084},"labels":[],"label_agreement":null},{"id":"W2559752217","doi":"10.1016/bs.mie.2016.11.002","title":"Activity Assays for Rhomboid Proteases","year":2016,"lang":"en","type":"article","venue":"Methods in enzymology on CD-ROM/Methods in enzymology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Rhomboid; Proteases; Serine protease; Protease; Proteolysis; Subtilisin; Biochemistry; Chemistry; Serine; Catalytic triad; Enzyme; Biology","score_opus":0.04365965110632703,"score_gpt":0.40252733798136797,"score_spread":0.35886768687504095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2559752217","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6899849,0.00066861074,0.3022041,0.0020989808,0.0023416106,0.0016590887,0.000106593834,0.00009086356,0.0008452085],"genre_scores_gemma":[0.27505302,0.00038307198,0.7213124,0.000811052,0.00044546678,0.0010283719,0.00003169317,0.000115277406,0.00081963255],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98893195,0.0062824856,0.001073189,0.002001422,0.00015401833,0.0015569095],"domain_scores_gemma":[0.99537355,0.0022923928,0.00047599844,0.0015050517,0.00016296006,0.000190049],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.006606366,0.00077411113,0.001357527,0.0007320841,0.00013900438,0.000022449207,0.0010871916,0.0027568813,0.00014075568],"category_scores_gemma":[0.00640401,0.0006276904,0.00034116735,0.0005067011,0.0010983633,0.0000147742,0.0006356803,0.0007349679,0.000019186864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011490997,0.00047762427,0.0023325032,0.0000333106,0.00007680956,0.00002934313,0.000028758846,0.00001368017,0.7795564,0.002646801,0.0003979015,0.21325779],"study_design_scores_gemma":[0.0036481703,0.0036789426,0.046500273,0.000059080066,0.000040203806,0.00020786186,0.000029517754,0.00002597702,0.86199373,0.021821646,0.061111987,0.00088259927],"about_ca_topic_score_codex":0.00009378721,"about_ca_topic_score_gemma":0.0006664629,"teacher_disagreement_score":0.4191083,"about_ca_system_score_codex":0.00017278035,"about_ca_system_score_gemma":0.00024189604,"threshold_uncertainty_score":0.99961746},"labels":[],"label_agreement":null},{"id":"W2559814643","doi":"10.1016/j.pbiomolbio.2016.12.003","title":"FHA domains: Phosphopeptide binding and beyond","year":2016,"lang":"en","type":"review","venue":"Progress in Biophysics and Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; National Science Foundation","keywords":"Phosphopeptide; Phosphorylation; Biology; Conserved sequence; Computational biology; Transcription factor; Threonine; Transcription (linguistics); Function (biology); Cell biology; Peptide sequence; Genetics; Gene; Serine","score_opus":0.009551350540602235,"score_gpt":0.2964525867209561,"score_spread":0.28690123618035385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2559814643","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012142977,0.98650306,0.000099766374,0.000102298596,0.00025965006,0.00059068965,0.00017748562,0.00001808198,0.00010596549],"genre_scores_gemma":[0.0031347256,0.9947305,0.0011767228,0.00009463575,0.0001983185,0.00017576327,0.0003702263,0.000079652,0.000039466664],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99762905,0.000154048,0.00050099404,0.0010768299,0.000068326895,0.00057075405],"domain_scores_gemma":[0.9990162,0.000020305826,0.00028775074,0.0005164124,0.000041062984,0.0001182642],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019461452,0.0005945,0.0010615569,0.00019280265,0.00007310018,0.00005056829,0.00034354336,0.0012532462,0.0000035182904],"category_scores_gemma":[0.000024971909,0.00044312744,0.00019249276,0.00018964623,0.0007864698,0.0000032324904,0.00081350066,0.00025903073,0.0000076106053],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017279575,0.000046030116,0.000075638294,0.00076358364,0.00015384077,0.00002490229,0.0000039774727,4.323853e-9,0.033602122,0.0047025816,0.000020773765,0.9605893],"study_design_scores_gemma":[0.00052017806,0.0004785281,0.000005846803,0.0010621375,0.00011895522,0.00008593968,0.000004756531,4.798131e-7,0.008335474,0.0014363921,0.98725206,0.000699238],"about_ca_topic_score_codex":0.000003978364,"about_ca_topic_score_gemma":0.000004683135,"teacher_disagreement_score":0.9872313,"about_ca_system_score_codex":0.000022807148,"about_ca_system_score_gemma":0.000096435746,"threshold_uncertainty_score":0.99980205},"labels":[],"label_agreement":null},{"id":"W2560092812","doi":"10.1101/091496","title":"A Novel DNA-binding Protein Coordinates Asymmetric Chromosome Replication and Chromosome Partitioning","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; DNA replication; Genetics; Chromosome; Control of chromosome duplication; Origin recognition complex; Caulobacter crescentus; Origin of replication; Chromosome segregation; Locus (genetics); Circular bacterial chromosome; DNA; Pre-replication complex; Cell division; Cell cycle; Eukaryotic DNA replication; Cell biology; Gene; Cell","score_opus":0.010973887326245517,"score_gpt":0.21635665351344127,"score_spread":0.20538276618719575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560092812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99524325,0.00094763475,0.0013425441,0.0005758724,0.0004403962,0.00088357367,0.0004095529,0.00014537989,0.000011811124],"genre_scores_gemma":[0.994898,0.00046188684,0.003277699,0.00006567614,0.0007334003,0.00041298528,0.0000061839546,0.000116077535,0.000028074319],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971122,0.00006781042,0.0005000773,0.001558785,0.0001928941,0.00056820404],"domain_scores_gemma":[0.99739367,0.000014667344,0.00049549685,0.0015815282,0.00031575456,0.0001989044],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00047790637,0.0005214212,0.0004473606,0.00028035403,0.00020408555,0.00019167665,0.00047793845,0.0012248699,0.000012408163],"category_scores_gemma":[0.00037958947,0.00050713413,0.00011432652,0.0003534996,0.0002347396,0.000012468885,0.0009782147,0.00037668672,0.000021648817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026412832,0.00008203099,0.00075650314,0.00015026068,0.00011767362,0.0000048791762,0.0000010417265,6.052966e-7,0.99827594,0.0004867706,0.00007334329,0.00002454961],"study_design_scores_gemma":[0.0005852802,0.00019558425,0.006359404,0.0003085853,0.000054107877,2.1703858e-7,9.1054966e-7,0.000020541751,0.9833123,0.0000086562395,0.008481234,0.00067316834],"about_ca_topic_score_codex":0.000012066118,"about_ca_topic_score_gemma":0.0000018995544,"teacher_disagreement_score":0.0149636185,"about_ca_system_score_codex":0.00009885415,"about_ca_system_score_gemma":0.00026246294,"threshold_uncertainty_score":0.99973804},"labels":[],"label_agreement":null},{"id":"W2560317165","doi":"10.1515/hsz-2016-0265","title":"Guardians in a stressful world: the Opu family of compatible solute transporters from <i>Bacillus subtilis</i>","year":2016,"lang":"en","type":"review","venue":"Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto","keywords":"Bacillus subtilis; Turgor pressure; Osmolyte; Osmotic concentration; Osmotic shock; Efflux; Osmotic pressure; Cytoplasm; Biophysics; Chemistry; Osmosis; Osmoregulation; Mechanosensitive channels; Cell biology; Biology; Biochemistry; Bacteria; Membrane; Ion channel; Ecology; Genetics; Salinity","score_opus":0.03567511773680728,"score_gpt":0.27214919527394865,"score_spread":0.23647407753714136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560317165","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0510592,0.94551617,0.000023165,0.00006975716,0.00018311403,0.00040399542,0.001993468,0.000021063219,0.0007300488],"genre_scores_gemma":[0.02774186,0.96998405,0.00009721985,0.000069199334,0.00037921086,0.00008264911,0.0013614906,0.000035161203,0.00024913554],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99762344,0.000121681645,0.00084061926,0.0008123051,0.00012839178,0.0004735874],"domain_scores_gemma":[0.998518,0.000077142344,0.0004092261,0.0008615156,0.00004530811,0.000088833876],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00018582332,0.0005350188,0.0013001156,0.000044695094,0.000042566837,0.000016445816,0.0010420777,0.0014137361,0.00011183171],"category_scores_gemma":[0.000046315297,0.0002937485,0.0005822795,0.0002425165,0.00055452785,0.0000015662561,0.00026410996,0.00039981646,0.000010943847],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011478517,0.0001916552,0.00024012457,0.0012494611,0.00033251065,0.000024795689,0.00000991812,6.470682e-7,0.55546534,0.000010964116,0.001010841,0.44134897],"study_design_scores_gemma":[0.00035839053,0.000090504036,0.00013718552,0.0012123849,0.000090525864,0.000006742825,0.000017257778,3.4121598e-7,0.032282252,0.000038102473,0.9653358,0.00043053384],"about_ca_topic_score_codex":0.00006551445,"about_ca_topic_score_gemma":0.00006198105,"teacher_disagreement_score":0.96432495,"about_ca_system_score_codex":0.000032425403,"about_ca_system_score_gemma":0.00017214309,"threshold_uncertainty_score":0.9999515},"labels":[],"label_agreement":null},{"id":"W2560553054","doi":"10.1074/jbc.m116.754093","title":"A Complete Structural Inventory of the Mycobacterial Microcompartment Shell Proteins Constrains Models of Global Architecture and Transport","year":2016,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Shell (structure); Organelle; Chemistry; Biology; Biophysics; Cell biology; Materials science","score_opus":0.01569672069733331,"score_gpt":0.22036232872028758,"score_spread":0.20466560802295428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560553054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985424,0.00034899046,0.00022969166,0.00027011867,0.000087070155,0.000119889235,0.00033310786,0.0000020166112,0.00006667239],"genre_scores_gemma":[0.9989303,0.00013060712,0.00072917313,0.00002851589,0.00015877778,0.0000015313822,0.000008028191,0.0000041340954,0.000008950134],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990873,0.000038871793,0.00045455995,0.0001632233,0.00010024302,0.00015582965],"domain_scores_gemma":[0.999219,0.000007811787,0.0004317678,0.00017229344,0.00010089438,0.000068216184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010857221,0.00014421256,0.0002972677,0.000007219564,0.000023867895,0.0000032589048,0.00029937652,0.00029972286,0.000021671116],"category_scores_gemma":[0.000027129174,0.000069043825,0.00017856974,0.000045886303,0.0006787551,0.000002277341,0.00010939892,0.00010242759,5.5368893e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035345185,0.0000401693,0.008359959,0.0000329686,0.00007078874,0.0000016578803,0.0000075609223,0.0000054991146,0.99007624,0.000046473255,0.0000133637,0.0009918878],"study_design_scores_gemma":[0.00096231105,0.0004348201,0.012202513,0.000058763464,0.000024582381,0.00019796616,0.000014862304,0.0000018721614,0.9835202,0.0011829102,0.0012968201,0.000102373975],"about_ca_topic_score_codex":0.0000024330434,"about_ca_topic_score_gemma":0.000003127571,"teacher_disagreement_score":0.0065560145,"about_ca_system_score_codex":0.000015086437,"about_ca_system_score_gemma":0.00009317044,"threshold_uncertainty_score":0.28155255},"labels":[],"label_agreement":null},{"id":"W2560570740","doi":"10.1186/s12896-016-0320-7","title":"Modular assembly of synthetic proteins that span the plasma membrane in mammalian cells","year":2016,"lang":"en","type":"article","venue":"BMC Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Cancer Society Research Institute","keywords":"Biology; Endoplasmic reticulum; Extracellular; Cell biology; Membrane protein; Transmembrane protein; Intracellular; Membrane; STIM1; Biophysics; Biochemistry; Receptor","score_opus":0.011879347643007545,"score_gpt":0.2093564340569653,"score_spread":0.19747708641395775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560570740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99072826,0.00023188768,0.0033241024,0.0047520553,0.00024011916,0.0005260865,0.000038451737,0.000044624987,0.00011440591],"genre_scores_gemma":[0.99597746,0.0005357017,0.0029649432,0.0000567591,0.00006414224,0.00005982711,0.0000073549495,0.000034718272,0.00029911078],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99835956,0.00010743445,0.00035645097,0.0005656274,0.00012798759,0.00048293915],"domain_scores_gemma":[0.9986022,0.000028656008,0.00019503382,0.0010887306,0.00004192034,0.000043446984],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029458964,0.00025388933,0.0003076041,0.00020005535,0.000049058544,0.000010003712,0.0008127577,0.0012779542,0.000032162738],"category_scores_gemma":[0.00011382694,0.00015372389,0.00011635055,0.00025422583,0.0006615786,0.000003398159,0.00040157096,0.00019273077,0.000027300954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010079897,0.000079666686,0.0008823054,0.000025111394,0.000023373794,0.0000041946337,0.0000063941816,0.000008900914,0.9891316,0.0012714879,0.000039572948,0.008426546],"study_design_scores_gemma":[0.00073842943,0.0004536646,0.002380453,0.000035433146,0.000014196528,0.00003789708,0.00004486794,0.000035736884,0.97824824,0.00026193485,0.017526459,0.00022266313],"about_ca_topic_score_codex":0.00005713385,"about_ca_topic_score_gemma":0.00056768674,"teacher_disagreement_score":0.017486885,"about_ca_system_score_codex":0.000020927493,"about_ca_system_score_gemma":0.00008203553,"threshold_uncertainty_score":0.98567533},"labels":[],"label_agreement":null},{"id":"W2562058818","doi":"10.1002/pro.3109","title":"Structural investigation on WlaRG from <i>Campylobacter jejuni</i>: A sugar aminotransferase","year":2016,"lang":"en","type":"article","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Campylobacter jejuni; Amino sugar; Galactose; Bacteria; Biochemistry; Microbiology; Glycoconjugate; Enzyme; Chemistry; Biology; Stereochemistry; Genetics","score_opus":0.014662889506396664,"score_gpt":0.22409630495459215,"score_spread":0.2094334154481955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2562058818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772745,0.00004327881,0.00028472597,0.0012564184,0.0002088245,0.00025906105,0.000056130768,0.00002230642,0.00014177228],"genre_scores_gemma":[0.9978404,0.000020714146,0.0013665291,0.00035831842,0.00018141903,0.000024162995,0.000016710495,0.000010172666,0.00018154143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877024,0.000032364984,0.00015172806,0.0005395538,0.00020175506,0.00030436355],"domain_scores_gemma":[0.9993018,0.0000064867445,0.000051452247,0.0004415144,0.00008658573,0.00011218491],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017123834,0.00014162538,0.0000915465,0.00005631656,0.0001313128,0.00005050166,0.0004462877,0.00015480445,0.000054334636],"category_scores_gemma":[0.0001253632,0.0000922629,0.000036029534,0.00017490955,0.00069360493,0.000010330178,0.000120187666,0.00006328564,0.000039298546],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005598734,0.000009164563,0.00073906,0.000001524685,0.0000038029762,9.787161e-7,0.000012232774,4.3540513e-7,0.9863608,0.00047298352,0.000024100673,0.012318952],"study_design_scores_gemma":[0.00035483154,0.0004392957,0.0068892012,0.000023177903,0.0000030053902,0.0000023165242,0.0000039973534,0.000008684534,0.98645896,0.0014672204,0.004181447,0.00016786471],"about_ca_topic_score_codex":0.000029981718,"about_ca_topic_score_gemma":0.000035069887,"teacher_disagreement_score":0.012151088,"about_ca_system_score_codex":0.000019695204,"about_ca_system_score_gemma":0.000113786016,"threshold_uncertainty_score":0.37623715},"labels":[],"label_agreement":null},{"id":"W2562700014","doi":"10.1146/annurev-biophys-070816-034058","title":"Integration of Bacterial Small RNAs in Regulatory Networks","year":2017,"lang":"en","type":"review","venue":"Annual Review of Biophysics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":174,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Planning and Budgeting Committee of the Council for Higher Education of Israel; Israeli Centers for Research Excellence; Azrieli Foundation; Israel Science Foundation","keywords":"Biology; Computational biology; Gene regulatory network; Regulator; Regulation of gene expression; Gene; Transfer RNA; Systems biology; Gene expression; Genetics; RNA","score_opus":0.03231680484354694,"score_gpt":0.32019162254801614,"score_spread":0.2878748177044692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2562700014","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00031318612,0.9981783,0.000047914906,0.000011592783,0.0004516038,0.0005999315,0.00023174904,0.0000038046412,0.00016193307],"genre_scores_gemma":[0.00021080702,0.9976297,0.00023364999,0.000028972272,0.0004929034,0.00003220321,0.0012616864,0.000037945156,0.000072102666],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99813116,0.0001452658,0.0009988752,0.00040726777,0.00010177032,0.00021563884],"domain_scores_gemma":[0.9973465,0.000013858138,0.0013705437,0.0010421397,0.0001860019,0.000040930696],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003580042,0.00036300905,0.0017851923,0.00007157333,0.000022576603,0.0000090291605,0.000659329,0.0007790951,0.000008127182],"category_scores_gemma":[0.0001352761,0.00029413513,0.0005723727,0.0001431903,0.00022236368,0.0000038451494,0.00029345727,0.00023373237,0.0000029696132],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011496526,0.000058304886,2.9719018e-7,0.02388739,0.00006896877,0.0000011133394,0.000003730626,1.2848736e-7,0.005506154,0.00012461063,0.0002756525,0.97006214],"study_design_scores_gemma":[0.00011210968,0.00027029548,0.000010131126,0.04853316,0.0002382648,0.0000052835703,0.0000026069504,6.3284983e-7,0.0030740688,0.000017119197,0.9474754,0.000260953],"about_ca_topic_score_codex":0.000016073678,"about_ca_topic_score_gemma":0.00002266172,"teacher_disagreement_score":0.9698012,"about_ca_system_score_codex":0.000015259184,"about_ca_system_score_gemma":0.0002483495,"threshold_uncertainty_score":0.99995106},"labels":[],"label_agreement":null},{"id":"W2564579600","doi":"10.1016/j.jmb.2016.12.008","title":"The RavA-ViaA Chaperone-Like System Interacts with and Modulates the Activity of the Fumarate Reductase Respiratory Complex","year":2016,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Toronto","keywords":"Biology; Chaperone (clinical); Cell biology; Protein subunit; Fumarate reductase; Anaerobic respiration; Biochemistry; Escherichia coli; Gene; Genetics; Bacteria","score_opus":0.010188634309316002,"score_gpt":0.23874771339900333,"score_spread":0.22855907908968734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2564579600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99460655,0.0015582276,0.0005883527,0.0027188025,0.00031286132,0.00015622948,0.000015771957,0.000002726434,0.00004047645],"genre_scores_gemma":[0.9992289,0.00028840775,0.00010635422,0.0002121653,0.00011527692,0.0000038456997,0.0000010519756,0.000014067858,0.000029960549],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988098,0.00036938617,0.00031886998,0.0001899094,0.00009579308,0.00021620924],"domain_scores_gemma":[0.9986796,0.000046508772,0.0005528365,0.00047688762,0.00019552415,0.000048636055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047635028,0.00015722042,0.00022353335,0.00003281327,0.00013920889,0.000017817305,0.0004996528,0.00019754196,0.0000021412816],"category_scores_gemma":[0.00009175702,0.000055567478,0.00010343321,0.00007468229,0.00080549356,0.0000037686755,0.00025828843,0.00016042843,5.8291084e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039877606,0.000020594702,0.00032926904,0.000007882522,0.00017065197,0.0000037067557,0.000012761555,0.0000035731725,0.9921016,0.0004172084,0.00013754581,0.0063964003],"study_design_scores_gemma":[0.0006973336,0.001148865,0.004666115,0.000048455087,0.000049968832,0.00030297475,0.00005346685,0.0000068971717,0.97270685,0.00010116532,0.0201176,0.00010030967],"about_ca_topic_score_codex":0.0000070413284,"about_ca_topic_score_gemma":0.000019670786,"teacher_disagreement_score":0.019980054,"about_ca_system_score_codex":0.000015709325,"about_ca_system_score_gemma":0.00009486645,"threshold_uncertainty_score":0.29678744},"labels":[],"label_agreement":null},{"id":"W2567638643","doi":"10.1111/mmi.13596","title":"1,2‐Diacylglycerol choline phosphotransferase catalyzes the final step in the unique <i>Treponema denticola</i> phosphatidylcholine biosynthesis pathway","year":2016,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; Consejo Nacional de Ciencia y Tecnología; National Institutes of Health; Universidad Nacional Autónoma de México; U.S. Public Health Service; National Institute of Allergy and Infectious Diseases; McMaster University","keywords":"Diacylglycerol kinase; Biology; Treponema denticola; Phosphotransferase; Biochemistry; Phosphocholine; Phosphatidylcholine; PEP group translocation; Mutant; Phospholipid; Gene; Kinase; Genetics; Protein kinase C; Bacteria","score_opus":0.007449736497723156,"score_gpt":0.21008203576022225,"score_spread":0.2026322992624991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2567638643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98849636,0.0020639824,0.00277741,0.0053827884,0.00031427757,0.0005829461,0.000274911,0.00002328454,0.000084047584],"genre_scores_gemma":[0.9954036,0.00083548535,0.0003251815,0.0028002101,0.00013438595,0.00011256342,0.00018858632,0.000042906762,0.00015711552],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99766713,0.0004440847,0.00048650723,0.0006907421,0.00008539934,0.0006261385],"domain_scores_gemma":[0.9985579,0.00009836086,0.00013223544,0.0010645884,0.00008792294,0.0000589713],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058023125,0.00037490096,0.00031398732,0.00008348553,0.00013499736,0.000042346473,0.00102404,0.00055704865,0.0000528996],"category_scores_gemma":[0.0001786839,0.00019324395,0.00021039163,0.0002595317,0.0005223847,0.000005018639,0.00022985827,0.00023823387,0.00003890177],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020496608,0.00015405985,0.00038798762,0.000007704829,0.000066673936,0.000055047047,0.000036789635,0.0000029985054,0.9904243,0.00024499916,0.00058361416,0.007830879],"study_design_scores_gemma":[0.0010318384,0.0002699411,0.00049534277,0.000019486582,0.000030226562,0.00023604315,0.000028769944,0.000002280734,0.82590383,0.000049575527,0.17167196,0.0002607239],"about_ca_topic_score_codex":0.00008460416,"about_ca_topic_score_gemma":0.00046998519,"teacher_disagreement_score":0.17108834,"about_ca_system_score_codex":0.000025780038,"about_ca_system_score_gemma":0.000102977734,"threshold_uncertainty_score":0.788026},"labels":[],"label_agreement":null},{"id":"W2569383255","doi":"10.1016/j.molcel.2016.11.002","title":"In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways","year":2017,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":291,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"Deutsche Forschungsgemeinschaft; Wellcome Trust; Wellcome","keywords":"Endoribonuclease; Biology; RNase P; RNA; Exosome complex; RNase MRP; Ribonuclease III; Cell biology; Non-coding RNA; RNase H; Degradosome; Biogenesis; RNase PH; Cleavage (geology); Molecular biology; Biochemistry; Gene; RNA interference","score_opus":0.00496909293613587,"score_gpt":0.1987791751624202,"score_spread":0.19381008222628432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2569383255","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99710524,0.00062854623,0.00008802806,0.00026550112,0.0001114541,0.00016096156,0.000014449108,0.0000025521936,0.001623267],"genre_scores_gemma":[0.9991799,0.000414546,0.00019327605,0.00008308131,0.0000408445,0.0000070100964,0.0000058809323,0.000015855729,0.00005960864],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999156,0.00003423358,0.00019100156,0.00026826703,0.00006330793,0.000287211],"domain_scores_gemma":[0.99936074,0.0000053992167,0.00012083284,0.0004563462,0.00001692888,0.000039750226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015448082,0.0001326234,0.00015511985,0.00004725003,0.000074633215,0.000038475642,0.0003347008,0.00020961877,0.0000061390197],"category_scores_gemma":[0.000032417604,0.000112632675,0.000048326714,0.00003367756,0.00017983477,0.000004090899,0.0003094887,0.00011890321,0.000001108112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030928815,0.000039928345,0.002145059,0.000024587333,0.0000063431307,0.000033239136,0.000096426586,0.0000049001987,0.99646837,0.00014677185,0.000044050885,0.00095937646],"study_design_scores_gemma":[0.0005426006,0.00010520227,0.004162694,0.000023437864,0.000006609516,0.0000030847518,0.00015253591,0.00014599327,0.9917459,0.00018156103,0.002797187,0.00013321904],"about_ca_topic_score_codex":0.00016406005,"about_ca_topic_score_gemma":0.00013622404,"teacher_disagreement_score":0.0047225133,"about_ca_system_score_codex":0.000008646047,"about_ca_system_score_gemma":0.000024228266,"threshold_uncertainty_score":0.45930272},"labels":[],"label_agreement":null},{"id":"W2570563778","doi":"10.3791/54854","title":"Conjugative Mating Assays for Sequence-specific Analysis of Transfer Proteins Involved in Bacterial Conjugation","year":2017,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Bacterial conjugation; Plasmid; Biology; Gene; Genetics; DNA; Escherichia coli; Mating; Horizontal gene transfer; Exogenous DNA; Point mutation; Cell biology; Mutant; Computational biology; Genome","score_opus":0.059243208662671486,"score_gpt":0.4035464537033009,"score_spread":0.3443032450406294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2570563778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99551725,0.00015274817,0.0035533423,0.00006642762,0.00026461095,0.00032956022,0.000066908215,0.0000018432827,0.000047287733],"genre_scores_gemma":[0.99472696,0.0001683032,0.004817014,0.00001952391,0.00014524067,0.000021994081,0.000076754826,0.000013491154,0.000010703857],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987658,0.000078988385,0.00066259917,0.00018305008,0.00014176194,0.00016777443],"domain_scores_gemma":[0.99878687,0.000013741397,0.0006297133,0.00026233587,0.0002601209,0.000047205987],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042096243,0.00013653062,0.0004531475,0.00019916739,0.0000802622,0.000050278235,0.00031430187,0.0002274347,0.000030156405],"category_scores_gemma":[0.00012305503,0.00012119516,0.00022257182,0.00009033986,0.00013720569,0.000014689811,0.000050415136,0.0000772514,2.1604903e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010164564,0.00011882951,0.0012569608,0.00001170455,0.00048662993,0.0000017610907,0.00026287584,0.000010602964,0.9959843,0.00018933704,0.000020481302,0.0006400608],"study_design_scores_gemma":[0.0031142188,0.0008182856,0.0029915352,0.00004550975,0.00010536804,0.0000016894066,0.00020569337,0.00011924241,0.9910359,0.00008263634,0.00135214,0.00012778252],"about_ca_topic_score_codex":0.000020983265,"about_ca_topic_score_gemma":0.000028270695,"teacher_disagreement_score":0.0049484014,"about_ca_system_score_codex":0.000030455714,"about_ca_system_score_gemma":0.0000727406,"threshold_uncertainty_score":0.4942195},"labels":[],"label_agreement":null},{"id":"W2583357189","doi":"10.1128/mbio.02103-16","title":"The Type IVa Pilus Machinery Is Recruited to Sites of Future Cell Division","year":2017,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada; McMaster University","keywords":"Peptidoglycan; Bacterial outer membrane; Pilus; Cell envelope; Periplasmic space; Cell biology; Inner membrane; Pilin; Biology; Sulfolobus acidocaldarius; Chemistry; Biochemistry; Cell wall; Escherichia coli","score_opus":0.011737533781936087,"score_gpt":0.2592044715780047,"score_spread":0.2474669377960686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2583357189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99507874,0.00070323667,0.00001942787,0.0024540182,0.00052290206,0.000116125135,0.000027624328,0.000005999047,0.0010719373],"genre_scores_gemma":[0.9971562,0.00052520586,0.000317886,0.00024250973,0.00028644083,0.0000027388026,0.000027624346,0.000009935737,0.0014314661],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994397,0.000017070151,0.00011956862,0.00020120325,0.00006661843,0.00015579879],"domain_scores_gemma":[0.9990144,0.0000043256337,0.000097936376,0.000759608,0.00008271772,0.000041009902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000098499855,0.00009536595,0.00009399667,0.000016893695,0.00021520941,0.000045348184,0.00045883784,0.00023544834,0.00001734575],"category_scores_gemma":[0.000053530643,0.0000640217,0.000048708847,0.00003672959,0.00008027592,0.0000011280011,0.00035459007,0.00007513866,0.000020640411],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006092166,0.00001979723,0.002034254,0.0000052091095,0.0000119839415,5.644683e-7,0.000019730378,5.036661e-7,0.9804991,0.000038116224,0.0070538735,0.010255935],"study_design_scores_gemma":[0.00013038029,0.00030310475,0.013357071,0.0000036133315,0.000005444362,9.657621e-7,0.000013173876,0.0000062246872,0.7023954,0.00004803775,0.2836607,0.00007588888],"about_ca_topic_score_codex":0.000030208741,"about_ca_topic_score_gemma":0.000053875097,"teacher_disagreement_score":0.2781037,"about_ca_system_score_codex":0.00000341172,"about_ca_system_score_gemma":0.000019894076,"threshold_uncertainty_score":0.2610729},"labels":[],"label_agreement":null},{"id":"W2587716462","doi":"10.1021/acssynbio.6b00366","title":"An Engineered Survival-Selection Assay for Extracellular Protein Expression Uncovers Hypersecretory Phenotypes in <i>Escherichia coli</i>","year":2017,"lang":"en","type":"article","venue":"ACS Synthetic Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Division of Chemical, Bioengineering, Environmental, and Transport Systems; National Institute of Food and Agriculture; Division of Graduate Education; Petroleum Technology Research Centre; U.S. Department of Energy","keywords":"Escherichia coli; Extracellular; Secretion; Biology; Context (archaeology); Synthetic biology; Mutant; Secretory protein; Protein engineering; Phenotype; Cell biology; Computational biology; Gene; Biochemistry; Enzyme","score_opus":0.011604056471802602,"score_gpt":0.24343748283081373,"score_spread":0.23183342635901114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587716462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99178034,0.00039726714,0.0061155222,0.0002720794,0.0005351482,0.00059892,0.000050029957,0.000029535953,0.00022118418],"genre_scores_gemma":[0.99567306,0.00010945645,0.0033317525,0.000047977683,0.00027991444,0.00016456303,0.00014426668,0.00003943005,0.0002095822],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99848974,0.00016705577,0.0002620617,0.00060413766,0.000057719662,0.00041930526],"domain_scores_gemma":[0.99891424,0.000023908016,0.00018529422,0.00072872103,0.00007146744,0.00007638269],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050162565,0.00023948387,0.00027586505,0.000065405315,0.00020881604,0.000043229647,0.0005247066,0.00082712446,0.00001885353],"category_scores_gemma":[0.00031225645,0.00022129329,0.000078351855,0.000042611427,0.00023586987,0.000007580361,0.000113129856,0.0001630823,0.000004904414],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023741265,0.00009705328,0.0008541412,0.000017634993,0.000022838422,0.000001086624,0.000015076732,0.00002202418,0.9944377,0.00079686695,0.00003792595,0.0034602184],"study_design_scores_gemma":[0.0007515747,0.0007434533,0.00070494396,0.000019715846,0.000014475214,0.0000032366474,0.00003796017,0.00016322646,0.9530341,0.0005108214,0.0437251,0.00029141482],"about_ca_topic_score_codex":0.000089567846,"about_ca_topic_score_gemma":0.00018789904,"teacher_disagreement_score":0.043687172,"about_ca_system_score_codex":0.00002357508,"about_ca_system_score_gemma":0.000090895206,"threshold_uncertainty_score":0.9024079},"labels":[],"label_agreement":null},{"id":"W2588188834","doi":"10.1016/j.chembiol.2017.02.004","title":"Stimulating Central Carbon Metabolism to Re-sensitize Pseudomonas aeruginosa to Aminoglycosides","year":2017,"lang":"en","type":"letter","venue":"Cell chemical biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Pseudomonas aeruginosa; Potentiator; Tobramycin; Microbiology; Aminoglycoside; Bacteria; Multidrug tolerance; Antibiotics; Biology; Genetics; Biofilm","score_opus":0.01242704060229698,"score_gpt":0.24039506012496453,"score_spread":0.22796801952266754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588188834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8776198,0.0006744374,0.00008413813,0.116257764,0.0019695174,0.00073860027,0.00033416133,0.00007604871,0.0022455428],"genre_scores_gemma":[0.8210182,0.000103497434,0.003980103,0.16048276,0.011335375,0.000075807446,0.0016324099,0.00014074003,0.0012310713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99614024,0.00011898192,0.0005664191,0.001617649,0.00015557036,0.0014011164],"domain_scores_gemma":[0.997667,0.000059926766,0.00027715106,0.0015686245,0.0001588814,0.00026841063],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001374854,0.00075136055,0.0009101312,0.00014865023,0.00012123259,0.000075559656,0.001201024,0.0039606723,0.000033941036],"category_scores_gemma":[0.00044511972,0.00071339327,0.00029379668,0.0000995436,0.00030126327,0.0000017095124,0.0012349411,0.0011358546,0.00006348883],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008471111,0.00002335248,0.000052103882,0.000037634913,0.000066058274,0.000064692154,0.00001672531,0.000003863389,0.84130853,0.000007731862,0.15726744,0.0010671329],"study_design_scores_gemma":[0.00021497607,0.00020414908,0.000027437933,0.00002056736,0.000051492254,0.000020876087,0.000003317381,0.0000040794594,0.55041826,0.00006546094,0.4484499,0.0005194934],"about_ca_topic_score_codex":0.00013327127,"about_ca_topic_score_gemma":0.000016627684,"teacher_disagreement_score":0.2911825,"about_ca_system_score_codex":0.000053512762,"about_ca_system_score_gemma":0.00013634283,"threshold_uncertainty_score":0.99953175},"labels":[],"label_agreement":null},{"id":"W2590372244","doi":"10.71781/28137","title":"Étude des mécanismes de surenroulement de l'ADN induit par la transcription chez Escherichia coli","year":2003,"lang":"fr","type":"dissertation","venue":"Open MIND","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Université de Montréal","keywords":"Molecular biology; Biology; Escherichia coli; Chemistry; Genetics; Gene","score_opus":0.01762859502923297,"score_gpt":0.2748111899693862,"score_spread":0.2571825949401532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2590372244","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99109477,0.0022252144,0.00036323513,0.00023111748,0.00047999568,0.000721969,0.00016712937,0.000002402606,0.0047141416],"genre_scores_gemma":[0.9668217,0.003278148,0.020755835,0.0001397601,0.00018936583,0.00011598615,0.0019815697,0.00007590187,0.006641771],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99742067,0.00041682163,0.00051844894,0.00077959214,0.00014396885,0.00072052074],"domain_scores_gemma":[0.99892724,0.000013444753,0.00028283545,0.0004265369,0.0001409543,0.00020900916],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007900212,0.000515402,0.00045504785,0.000065654785,0.0002462323,0.00031238946,0.00077674916,0.0021319347,0.0010420026],"category_scores_gemma":[0.00006269275,0.0005662749,0.00018441975,0.00016975013,0.00028516553,0.000010167913,0.00009686367,0.00045407526,0.000046615776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022875029,0.00032348122,0.0012564257,0.00008026677,0.00027528065,0.000016144266,0.0013634985,0.00001862885,0.9384336,0.00010942643,0.00022749715,0.057667036],"study_design_scores_gemma":[0.00086560525,0.00058728573,0.0194811,0.00010620704,0.00024583394,0.000032525193,0.0010503498,0.000008992489,0.83658445,0.00011632596,0.14037499,0.0005463322],"about_ca_topic_score_codex":0.00069594855,"about_ca_topic_score_gemma":0.006488278,"teacher_disagreement_score":0.14014749,"about_ca_system_score_codex":0.00012862052,"about_ca_system_score_gemma":0.001005745,"threshold_uncertainty_score":0.9998712},"labels":[],"label_agreement":null},{"id":"W2592233961","doi":"10.1007/s12104-017-9738-7","title":"1H, 15N and 13C resonance assignments and secondary structure of PulG, the major pseudopilin from Klebsiella oxytoca type 2 secretion system","year":2017,"lang":"en","type":"article","venue":"Biomolecular NMR Assignments","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Agence Nationale de la Recherche; Institut Pasteur; Institut national de la recherche scientifique","keywords":"Periplasmic space; Secretion; Klebsiella oxytoca; Bacterial outer membrane; Biochemistry; Globular protein; Biology; Biophysics; Protein structure; Membrane transport protein; Chemistry; Cell biology; Escherichia coli; Transporter; Enterobacteriaceae; Gene","score_opus":0.006907823166878771,"score_gpt":0.2297265927295576,"score_spread":0.22281876956267882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2592233961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99466455,0.0033949728,0.00050819333,0.00022286363,0.00032516336,0.0003626612,0.0002684116,0.000011055804,0.00024215381],"genre_scores_gemma":[0.9982447,0.00045835896,0.00073656393,0.00012121965,0.0001378252,0.000007669079,0.00014287636,0.000028872375,0.000121926925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862117,0.00010217006,0.00027520544,0.0005343201,0.00020842276,0.00025872397],"domain_scores_gemma":[0.99867517,0.000008593639,0.00030828844,0.0008595125,0.000062944986,0.00008550196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013656382,0.00024628497,0.00024212136,0.000032911023,0.0002861524,0.00011507968,0.000456607,0.00042302703,0.000016438024],"category_scores_gemma":[0.00004881137,0.00019146959,0.000050993745,0.00004244885,0.00035820174,0.000008026647,0.0006447854,0.00013505602,0.000002541483],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013605179,0.000020740903,0.003389854,0.000033989127,0.0001186532,0.000008228425,0.000016461478,3.2135898e-7,0.98986,0.00010190842,0.00026673605,0.006047045],"study_design_scores_gemma":[0.0012294556,0.0004905536,0.050400037,0.00007488912,0.00008467975,0.000029225826,0.0000655441,0.00011243278,0.93517077,0.00020944892,0.011848156,0.0002847804],"about_ca_topic_score_codex":0.000113142785,"about_ca_topic_score_gemma":0.00003074856,"teacher_disagreement_score":0.054689217,"about_ca_system_score_codex":0.000019532343,"about_ca_system_score_gemma":0.00005541934,"threshold_uncertainty_score":0.7807903},"labels":[],"label_agreement":null},{"id":"W2593464858","doi":"10.1128/mbio.00097-17","title":"The Proximity of Ribosomal Protein Genes to <i>oriC</i> Enhances <i>Vibrio cholerae</i> Fitness in the Absence of Multifork Replication","year":2017,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Commission; Centre National de la Recherche Scientifique; Institut Pasteur; Institut national de la recherche scientifique; Agence Nationale de la Recherche; European Molecular Biology Organization","keywords":"Vibrio cholerae; Biology; Locus (genetics); Gene dosage; Genetics; Gene; Origin of replication; Bacterial artificial chromosome; Ribosome biogenesis; Ribosomal RNA; Replication timing; Genome; Computational biology; Gene expression; Ribosome; RNA; Bacteria","score_opus":0.012880991230241421,"score_gpt":0.26503016234234134,"score_spread":0.2521491711120999,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2593464858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997293,0.00030417633,0.00010628758,0.00143525,0.00009694086,0.0005273419,0.00002160293,0.0000031518916,0.00021224235],"genre_scores_gemma":[0.9989717,0.00018436564,0.000470647,0.000060739152,0.00008967116,0.000083338484,0.000010688914,0.000006262692,0.00012256659],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992043,0.000042987154,0.00023241158,0.0002649028,0.00009773045,0.00015769705],"domain_scores_gemma":[0.9984278,0.000009851186,0.00023762773,0.0012223203,0.000084049636,0.000018370041],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037712808,0.000092019465,0.00011576503,0.000013461404,0.00015845182,0.00003416373,0.0008475427,0.0001443619,9.620502e-7],"category_scores_gemma":[0.00017133977,0.000056265384,0.000045097797,0.00006117692,0.00024079614,0.000003983677,0.0002040267,0.000066111796,0.0000014361754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006398022,0.000044679422,0.0023609558,0.000012660285,0.000006865211,2.0949865e-7,0.00004212373,0.0000021832811,0.979411,0.00016232034,0.000052208212,0.017840803],"study_design_scores_gemma":[0.00017076236,0.0001628182,0.03582389,0.000018303008,0.0000026295183,0.0000017992251,0.000028188742,0.0000073005062,0.9449502,0.00009613141,0.018666359,0.00007158574],"about_ca_topic_score_codex":0.00015199845,"about_ca_topic_score_gemma":0.00039331167,"teacher_disagreement_score":0.03446078,"about_ca_system_score_codex":0.0000037031907,"about_ca_system_score_gemma":0.000036243306,"threshold_uncertainty_score":0.22944358},"labels":[],"label_agreement":null},{"id":"W2594902416","doi":"10.1128/mbio.01977-16","title":"Bacteria Getting into Shape: Genetic Determinants of <i>E. coli</i> Morphology","year":2017,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Keio University; Government of Canada","keywords":"Phenotype; Mutant; Biology; Genetic screen; Systems biology; Gene; Mutation; Model organism; Escherichia coli; Genetics; Computational biology","score_opus":0.010194189896499577,"score_gpt":0.2545922648876286,"score_spread":0.244398074991129,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2594902416","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864644,0.00021900181,0.00004781545,0.00019731569,0.0004737465,0.00013134554,0.00002174954,0.00001018522,0.0002524037],"genre_scores_gemma":[0.9954152,0.00021325197,0.003733151,0.0001586723,0.00023392598,0.000011748536,0.000021685122,0.000023369503,0.00018900102],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989804,0.00003116843,0.0002869348,0.00036109125,0.00006596771,0.0002744137],"domain_scores_gemma":[0.9987081,0.0000043496825,0.00028520307,0.00086868077,0.000073389376,0.000060256178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011270623,0.00015948417,0.00023077457,0.000035629313,0.00019178413,0.000038918926,0.0006095632,0.00038356008,0.00005649219],"category_scores_gemma":[0.0000956585,0.00015488316,0.000080118734,0.000024022254,0.00033325976,0.0000029197251,0.0004650952,0.00007618827,0.000017399014],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047945832,0.000033856013,0.017484516,0.000020701607,0.000018400428,0.00000876692,0.000013493466,4.2294417e-7,0.9543762,0.00001158485,0.00025745647,0.027726615],"study_design_scores_gemma":[0.0004077054,0.00032879578,0.13668394,0.000013347237,0.00001573708,0.000033261073,0.0000084349795,0.000036058198,0.8472992,0.00011611058,0.01487931,0.00017809632],"about_ca_topic_score_codex":0.00010841396,"about_ca_topic_score_gemma":0.000120753015,"teacher_disagreement_score":0.119199425,"about_ca_system_score_codex":0.000006426442,"about_ca_system_score_gemma":0.00005022061,"threshold_uncertainty_score":0.6315952},"labels":[],"label_agreement":null},{"id":"W2596539719","doi":"10.3389/fmicb.2017.00453","title":"Xer Site Specific Recombination: Double and Single Recombinase Systems","year":2017,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Recombinase; Biology; Site-specific recombination; Genetics; Circular bacterial chromosome; Homologous recombination; FLP-FRT recombination; Holliday junction; Recombination; Synapsis; Chromosome segregation; Genome; Chromosome; Genetic recombination; DNA; Gene","score_opus":0.03944740111820599,"score_gpt":0.2757834093226414,"score_spread":0.2363360082044354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2596539719","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015843539,0.991375,0.00005361602,0.00004093828,0.005584266,0.0007602661,0.00016877746,0.000015922295,0.00041685597],"genre_scores_gemma":[0.00014224746,0.9935373,0.00097306503,0.000017538705,0.0003169042,0.00007542971,0.001968877,0.000060806065,0.002907827],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997783,0.00019400303,0.00060341984,0.00093132985,0.000028694092,0.00045952716],"domain_scores_gemma":[0.998522,0.000009646493,0.0004829712,0.0008639083,0.000053943615,0.00006753022],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00030407705,0.0004691567,0.0013775594,0.0002642768,0.00011015844,0.00009603109,0.0005508716,0.0019108361,0.000011083427],"category_scores_gemma":[0.000022773746,0.00043101303,0.00019300188,0.0000846503,0.00036679095,0.0000031111215,0.00040446283,0.00037047543,0.000034501198],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013321471,0.00022184564,0.0001284983,0.0026861806,0.00028508765,0.000045793648,0.000015883974,4.631354e-7,0.049018484,0.000094306866,0.09612308,0.8512472],"study_design_scores_gemma":[0.00074970425,0.0002965701,0.0000025319405,0.00074311043,0.00007193157,0.00027676031,0.0000068847708,4.647061e-7,0.0007909461,0.000026539856,0.9965624,0.00047210633],"about_ca_topic_score_codex":0.000018865101,"about_ca_topic_score_gemma":0.000032736767,"teacher_disagreement_score":0.9004394,"about_ca_system_score_codex":0.00007576951,"about_ca_system_score_gemma":0.00009302464,"threshold_uncertainty_score":0.99981415},"labels":[],"label_agreement":null},{"id":"W2599827106","doi":"10.1128/mbio.00128-17","title":"RNA Sequencing Identifies New RNase III Cleavage Sites in <i>Escherichia coli</i> and Reveals Increased Regulation of mRNA","year":2017,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Andlinger Center for Energy and the Environment, Princeton University; National Institutes of Health; Canadian Association for the Study of the Liver; U.S. Department of Energy","keywords":"RNase P; Endoribonuclease; RNA; Biology; Degradosome; RNase MRP; RNase H; Ribonuclease III; Exosome complex; RNase PH; Biochemistry; Post-transcriptional modification; Messenger RNA; Non-coding RNA; Molecular biology; Cell biology; Gene; RNA interference","score_opus":0.014465392681176517,"score_gpt":0.2407708479153849,"score_spread":0.22630545523420836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2599827106","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985345,0.0003732757,0.000032203196,0.00024884078,0.00007987144,0.00012713233,0.000011995272,0.0000064797036,0.0005857283],"genre_scores_gemma":[0.9983241,0.00023231824,0.0006002975,0.00009171108,0.00011225405,0.0000028107393,0.000034488305,0.000010836291,0.00059116184],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993141,0.000029065233,0.00021645532,0.00023670247,0.000056633475,0.00014703422],"domain_scores_gemma":[0.999299,0.000005386207,0.0001909357,0.0004211929,0.000032594366,0.000050884413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016960267,0.00010537409,0.0001641808,0.00003898039,0.00008362015,0.000046108133,0.00018628099,0.00023100966,0.000008402575],"category_scores_gemma":[0.0000932447,0.00010537885,0.000033019318,0.000033903154,0.00013586732,0.000006623177,0.00017210894,0.000065384316,0.0000013957653],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000704155,0.000012887949,0.0048346217,0.000020701877,0.000012984193,0.0000020847654,0.00003219803,8.540875e-7,0.993266,0.000079705824,0.00036838747,0.0012991582],"study_design_scores_gemma":[0.00060146773,0.000099747376,0.07398599,0.000027747574,0.000011025147,0.0000028356349,0.000026198448,0.0000205787,0.9235224,0.000639762,0.0009501541,0.00011210879],"about_ca_topic_score_codex":0.0014165982,"about_ca_topic_score_gemma":0.00066584046,"teacher_disagreement_score":0.06974362,"about_ca_system_score_codex":0.000009927883,"about_ca_system_score_gemma":0.000052433003,"threshold_uncertainty_score":0.4297225},"labels":[],"label_agreement":null},{"id":"W2603153329","doi":"10.1038/srep44748","title":"A Novel Biocontainment Strategy Makes Bacterial Growth and Survival Dependent on Phosphite","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Advanced Low Carbon Technology Research and Development Program; Institute of Genetics; Japan Science and Technology Agency; Japan Society for the Promotion of Science; Keio University","keywords":"Pseudomonas stutzeri; Escherichia coli; Bacteria; Strain (injury); Mutant; Biochemistry; Biology; Chemistry; Microbiology; Gene; Genetics","score_opus":0.01403223701220535,"score_gpt":0.24320661968939508,"score_spread":0.22917438267718973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2603153329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919576,0.00007871431,0.00006787974,0.00024874453,0.0057598706,0.00022331125,0.000019210176,0.000013311563,0.0016313463],"genre_scores_gemma":[0.9984116,0.000046139005,0.00020800237,0.000021435664,0.0002709947,0.000014121444,0.00008782679,0.000015438001,0.0009244322],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983736,0.000016549242,0.00026708475,0.0008457202,0.00020304699,0.00029400096],"domain_scores_gemma":[0.9984428,0.000002952638,0.00027772153,0.0011035175,0.00006795233,0.00010502642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045508964,0.00017742004,0.00016056465,0.00004661908,0.00048180818,0.0005765426,0.00024117662,0.00021815405,0.000023640023],"category_scores_gemma":[0.00010849789,0.00015284159,0.000057296347,0.000028030392,0.00040971857,0.0000059625595,0.00031682043,0.00007666775,0.0000037931088],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006143143,0.00007325263,0.0016858929,0.000007587786,0.000025650199,0.000045191602,0.000008222399,0.0000012435183,0.99527085,0.00021261278,0.00022087168,0.0023872198],"study_design_scores_gemma":[0.00040076187,0.00031189038,0.01183429,0.0000112436255,0.000013206207,0.00012805473,0.000030034282,0.000003362961,0.9718627,0.00054115296,0.014642082,0.00022125633],"about_ca_topic_score_codex":0.00006746926,"about_ca_topic_score_gemma":0.0001329536,"teacher_disagreement_score":0.023408158,"about_ca_system_score_codex":0.000009147912,"about_ca_system_score_gemma":0.00008126777,"threshold_uncertainty_score":0.6232699},"labels":[],"label_agreement":null},{"id":"W2609563619","doi":"10.24870/cjb.2017-000104","title":"Plasmids containing the same origin of replication are useful tools to perform biotechnological studies in Pseudomonas putida U and in E. coli DH10B","year":2017,"lang":"en","type":"article","venue":"Canadian Journal of Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Junta de Castilla y León; Ministerio de Economía y Competitividad; Centro para el Desarrollo Tecnológico Industrial","keywords":"Pseudomonas putida; Plasmid; Replication (statistics); Pseudomonas; Biology; Microbiology; Bacteria; Genetics; Virology; Gene","score_opus":0.05903237407254848,"score_gpt":0.3025791565131901,"score_spread":0.24354678244064165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2609563619","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97882676,0.0014633748,0.000018983867,0.019201985,0.00020888931,0.00022843812,0.000024382683,0.0000048813013,0.00002227816],"genre_scores_gemma":[0.9977568,0.0014501783,0.00049362,0.0002044881,0.000054322427,0.000010466896,0.0000023985124,0.000011786428,0.000015960532],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99869066,0.00003856233,0.00051244575,0.00033078875,0.00006993094,0.00035758584],"domain_scores_gemma":[0.9984434,0.00002688362,0.00048158248,0.0008109146,0.00012848912,0.00010869122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061005884,0.00016621867,0.00041319738,0.0004636458,0.0001500938,0.000041917607,0.0008401226,0.0008956703,0.0000040646123],"category_scores_gemma":[0.0017798014,0.00012757775,0.000051874784,0.00019501342,0.0011317697,0.000010507348,0.00021880114,0.00047204114,9.665466e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024926433,0.00003302279,0.120169245,0.000027876484,0.00009023849,0.00012023366,0.0001426917,0.00002383146,0.84531885,0.0018586933,0.00028513317,0.031680938],"study_design_scores_gemma":[0.0010723101,0.0015919001,0.23598874,0.00019071567,0.000020155348,0.0003679734,0.0017645479,0.000020030493,0.7312947,0.0009350467,0.026487058,0.00026681408],"about_ca_topic_score_codex":0.00068663433,"about_ca_topic_score_gemma":0.04677054,"teacher_disagreement_score":0.11581949,"about_ca_system_score_codex":0.000086429805,"about_ca_system_score_gemma":0.0002895955,"threshold_uncertainty_score":0.97062343},"labels":[],"label_agreement":null},{"id":"W2610215778","doi":"10.1099/mic.0.000446","title":"Synthetic temperature-inducible lethal gene circuits in Escherichia coli","year":2017,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Biology; Escherichia coli; Gene; Mutant; Endonuclease; Molecular biology; Restriction enzyme; Lethal allele; Viability assay; SOS response; Genetics; Cell culture","score_opus":0.01044154085940978,"score_gpt":0.2317548499324759,"score_spread":0.2213133090730661,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2610215778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997014,0.0005505161,0.000013179995,0.00070374476,0.00071549334,0.00019716637,0.000056663277,0.000015277752,0.0007339534],"genre_scores_gemma":[0.9980998,0.0001903884,0.0003607856,0.0002964695,0.00026520176,0.000022720189,0.00013919733,0.000027349057,0.00059811096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985654,0.00007770061,0.00024340776,0.0006240158,0.000025538746,0.00046393627],"domain_scores_gemma":[0.99873966,0.0000060510874,0.00013767651,0.0010108236,0.000048762337,0.000057011443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021043008,0.00022066782,0.00027073285,0.00006761847,0.00019197975,0.000056887005,0.0006702555,0.00083431345,0.00004177582],"category_scores_gemma":[0.00011103729,0.00020922137,0.000078304096,0.00004804318,0.00033778753,0.0000030765823,0.0003739867,0.00023714577,0.000049453112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032057862,0.00006253578,0.0014579699,0.0000065657614,0.000027238579,0.00001900453,0.000011428936,0.0000028876211,0.9970163,0.00006491407,0.0004347282,0.00086435],"study_design_scores_gemma":[0.00062454987,0.00024388304,0.0067027896,0.000009863555,0.000008267759,0.000112485395,0.000010019842,0.0000017881838,0.9521915,0.00004645417,0.03979454,0.00025387085],"about_ca_topic_score_codex":0.000074517266,"about_ca_topic_score_gemma":0.00024324868,"teacher_disagreement_score":0.044824827,"about_ca_system_score_codex":0.00001921657,"about_ca_system_score_gemma":0.00009075511,"threshold_uncertainty_score":0.85318},"labels":[],"label_agreement":null},{"id":"W2611215450","doi":"","title":"Mechanistic Dissection of DNA Repair Pathways in Bacillus subtilis.","year":2014,"lang":"en","type":"dissertation","venue":"Deep Blue (University of Michigan)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Horace H. Rackham School of Graduate Studies, University of Michigan; National Science Foundation; National Institutes of Health; Newcastle University; University of Michigan; Massachusetts Institute of Technology","keywords":"Bacillus subtilis; DNA repair; Computational biology; DNA; Dissection (medical); Biology; Chemistry; Cell biology; Genetics; Anatomy; Bacteria","score_opus":0.004856566908387504,"score_gpt":0.17608400735661126,"score_spread":0.17122744044822374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2611215450","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982388,0.00026480816,0.0003555832,0.000010731251,0.0003539415,0.00016962978,0.00006532145,0.000017079858,0.00052412733],"genre_scores_gemma":[0.99673,0.0004079695,0.00054134056,0.0000076260935,0.000054431828,5.097926e-7,0.0015203676,0.00002134557,0.0007163646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990607,0.000054078202,0.00020759464,0.0003945778,0.00010651447,0.0001765296],"domain_scores_gemma":[0.9991551,0.000007783112,0.00029768454,0.0003759236,0.0001209169,0.000042559015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012670978,0.00019032505,0.00035356832,0.00018417275,0.000046589383,0.0000029863268,0.00029252376,0.0008303182,0.00003726124],"category_scores_gemma":[0.00003671167,0.0002442118,0.00019259995,0.00013997157,0.00008051957,0.00000259095,0.000077156335,0.00015962964,0.000004896931],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003635683,0.00008147482,0.000025125262,0.00020369215,0.00007280426,0.000007047335,0.0016903792,0.000012487758,0.995444,0.0003148355,0.000013334396,0.0017712287],"study_design_scores_gemma":[0.0014306102,0.0012196981,0.0066522043,0.00018305765,0.00021890018,0.000012018345,0.02266373,0.00036885697,0.95805067,0.00042982912,0.008117456,0.00065294176],"about_ca_topic_score_codex":0.00013997208,"about_ca_topic_score_gemma":0.07792366,"teacher_disagreement_score":0.0777837,"about_ca_system_score_codex":0.000012747424,"about_ca_system_score_gemma":0.00007496621,"threshold_uncertainty_score":0.9958669},"labels":[],"label_agreement":null},{"id":"W2613225199","doi":"10.1128/jb.00203-17","title":"Recent Advances and Future Prospects in Bacterial and Archaeal Locomotion and Signal Transduction","year":2017,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Ministerio de Economía y Competitividad; Canada Foundation for Innovation","keywords":"Biology; Chemotaxis; Flagellum; Archaea; Model organism; Bacteria; Motility; Signal transduction; Organism; Cell biology; Computational biology; Microbiology; Genetics; Receptor","score_opus":0.006900434857807671,"score_gpt":0.2360077434246423,"score_spread":0.22910730856683464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2613225199","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99181426,0.00486204,0.000029481755,0.002585449,0.0005900873,0.00009223304,0.000006242276,0.0000015534121,0.000018677434],"genre_scores_gemma":[0.9273973,0.07090066,0.0005815746,0.000029938934,0.001067626,0.0000018304961,0.000007458003,0.000007081866,0.000006531454],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99932754,0.00005718382,0.00024754938,0.0001881253,0.00003719858,0.00014240335],"domain_scores_gemma":[0.9994891,0.000004624586,0.00027445957,0.00011588625,0.000055737506,0.00006014683],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020689504,0.000111385954,0.00022197187,0.000063839034,0.00008416364,0.000041301028,0.00009490713,0.00026294187,0.000015265878],"category_scores_gemma":[0.00002526507,0.000091793736,0.000021806782,0.000014875362,0.00029039953,0.000017241555,0.000081111015,0.0001511202,1.0619345e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047750236,0.000022396165,0.006858842,0.000018060318,0.0000160263,0.0000074634304,0.000039933515,2.7983896e-7,0.79210925,0.000031707714,0.000007764891,0.20041077],"study_design_scores_gemma":[0.002886041,0.0035939952,0.585919,0.00003991254,0.000031033214,0.0016438314,0.00009821881,0.0000093036215,0.12654185,0.000913628,0.27807269,0.00025048453],"about_ca_topic_score_codex":0.0000032385215,"about_ca_topic_score_gemma":0.000075718526,"teacher_disagreement_score":0.6655674,"about_ca_system_score_codex":0.000007105955,"about_ca_system_score_gemma":0.000030165798,"threshold_uncertainty_score":0.374324},"labels":[],"label_agreement":null},{"id":"W2618467927","doi":"10.3389/fcimb.2017.00221","title":"Tracking Proteins Secreted by Bacteria: What's in the Toolbox?","year":2017,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Research Council; Centre National de la Recherche Scientifique; Agence Nationale de la Recherche; Institut Pasteur; Institut national de la recherche scientifique","keywords":"Secretion; Organism; Secretory protein; Computational biology; Biology; Toolbox; Cell biology; Computer science; Biochemistry; Genetics","score_opus":0.019928728171649795,"score_gpt":0.26354572068556864,"score_spread":0.24361699251391886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2618467927","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0116361845,0.98499733,0.00042390876,0.00006147641,0.001778542,0.00096664974,0.00007190649,0.000009203367,0.000054820397],"genre_scores_gemma":[0.0018153999,0.9955903,0.00020112432,0.00007319748,0.0002319607,0.00012544215,0.0018006124,0.000035415283,0.00012652218],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979398,0.00045442616,0.00051896553,0.00066031725,0.000030863932,0.0003955858],"domain_scores_gemma":[0.9990241,0.00001143136,0.00033836282,0.0005668024,0.000026925984,0.000032364263],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004978195,0.00040317897,0.0009055259,0.00020975414,0.0001244865,0.00018645693,0.0004202734,0.0016791428,0.000009324361],"category_scores_gemma":[0.000054996635,0.00030326526,0.00019565996,0.00012609453,0.0002985377,0.000015100847,0.00014174268,0.00055931654,0.0000035437397],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028355855,0.00010447485,0.00020630246,0.000932313,0.0001161283,0.000011956086,0.000038931237,1.826946e-7,0.19405031,0.0000068451895,0.003615788,0.8008884],"study_design_scores_gemma":[0.0003832417,0.0002399211,0.000021756805,0.00057386287,0.00007131736,0.00011675566,0.000030005389,9.235291e-7,0.0054139947,0.000016640644,0.9927901,0.00034148424],"about_ca_topic_score_codex":0.0000606294,"about_ca_topic_score_gemma":0.000093009075,"teacher_disagreement_score":0.9891743,"about_ca_system_score_codex":0.000039312014,"about_ca_system_score_gemma":0.00009164116,"threshold_uncertainty_score":0.99994195},"labels":[],"label_agreement":null},{"id":"W2619938970","doi":"10.1038/ismej.2017.83","title":"Co-evolution with <i>Staphylococcus aureus</i> leads to lipopolysaccharide alterations in <i>Pseudomonas aeruginosa</i>","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Royal Society; Cystic Fibrosis Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Pseudomonas aeruginosa; Staphylococcus aureus; Biology; Microbiology; Lipopolysaccharide; Staphylococcal infections; Bacteria; Immunology; Genetics","score_opus":0.009393115000083295,"score_gpt":0.2540178194872493,"score_spread":0.24462470448716597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2619938970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.989031,0.00015454022,0.0020604718,0.0076383664,0.00028688027,0.0001837999,0.000016504864,0.0000075369207,0.0006208928],"genre_scores_gemma":[0.99747455,0.00012829166,0.0006128906,0.00065614074,0.0007498233,0.000013484599,0.000007852976,0.000017774917,0.00033920966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990518,0.000054183092,0.00022013234,0.00021806425,0.00013870923,0.00031712165],"domain_scores_gemma":[0.99900067,0.000006050182,0.00018182493,0.0006311067,0.000081249884,0.00009910413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003126717,0.00015489638,0.00014303402,0.000065793734,0.00058923877,0.00021029156,0.0006618551,0.00016270606,0.000014181934],"category_scores_gemma":[0.000051310628,0.00010231802,0.000058850652,0.000044642922,0.00016776945,0.00000927472,0.00011063751,0.00030222043,0.000018186425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012705584,0.000036004476,0.00398094,0.000001668328,0.00002122429,0.000007994434,0.000041158113,0.00014252689,0.9920515,0.00025792792,0.0024473579,0.0008846825],"study_design_scores_gemma":[0.0008148243,0.00059650594,0.014585412,0.00002971497,0.000022214575,0.00017471827,0.000065911605,0.000018550927,0.95858186,0.00035004204,0.02452312,0.00023713284],"about_ca_topic_score_codex":0.00007461929,"about_ca_topic_score_gemma":0.00069218734,"teacher_disagreement_score":0.033469606,"about_ca_system_score_codex":0.000029143606,"about_ca_system_score_gemma":0.0001270086,"threshold_uncertainty_score":0.4532008},"labels":[],"label_agreement":null},{"id":"W2622492575","doi":"10.1016/j.biocel.2017.06.005","title":"The rhizoferrin biosynthetic gene in the fungal pathogen Rhizopus delemar is a novel member of the NIS gene family","year":2017,"lang":"en","type":"article","venue":"The International Journal of Biochemistry & Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Siderophore; Aerobactin; Biochemistry; Biology; Enterobactin; Biosynthesis; Rhizopus arrhizus; Gene; Escherichia coli; Bacteria; Microbiology; Enzyme; Enterobacteriaceae; Genetics","score_opus":0.013230448615394583,"score_gpt":0.25370470242625515,"score_spread":0.24047425381086057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2622492575","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886643,0.0018398548,0.000051082283,0.007712639,0.0009437688,0.00014099422,0.0001804047,0.0000019220552,0.0004649824],"genre_scores_gemma":[0.9965749,0.0016059437,0.00019806852,0.00070066674,0.0006645853,0.000007812914,0.00001769054,0.000015894992,0.00021447743],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984332,0.00011951127,0.0006148137,0.00026237758,0.00027923172,0.00029090082],"domain_scores_gemma":[0.99753165,0.00008271121,0.0009754354,0.0010356028,0.00033475953,0.000039821694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00095374347,0.00022082884,0.00022340253,0.000032925105,0.00028150209,0.00008582798,0.0042074635,0.00034686114,0.000014129375],"category_scores_gemma":[0.0002366506,0.00010186782,0.00029598016,0.000059215883,0.000784166,0.0000047851395,0.000732837,0.00037218045,0.0000027018539],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024121364,0.00009799056,0.0011487303,0.000004245252,0.0001517256,0.0000053521676,0.00004825849,0.0000071481395,0.99593574,0.00005151804,0.0005424101,0.0017656707],"study_design_scores_gemma":[0.00064757257,0.00014968732,0.003067632,0.000017298671,0.00004245843,0.00029070405,0.00013074443,0.000021010444,0.9710124,0.0002798809,0.024216795,0.00012377911],"about_ca_topic_score_codex":0.000071207796,"about_ca_topic_score_gemma":0.000036916743,"teacher_disagreement_score":0.024923299,"about_ca_system_score_codex":0.000031231575,"about_ca_system_score_gemma":0.00021816685,"threshold_uncertainty_score":0.7818584},"labels":[],"label_agreement":null},{"id":"W2626660250","doi":"","title":"Variability in Gene Expression","year":2008,"lang":"en","type":"dissertation","venue":"Library and Archives Canada (Government of Canada)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Gene expression; Computational biology; Biology; Genetics; Expression (computer science); Gene; Computer science; Programming language","score_opus":0.0020486829793634562,"score_gpt":0.14622229566605846,"score_spread":0.144173612686695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2626660250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95854896,0.00046493113,0.000008469561,0.00021578968,0.000315434,0.00014653237,0.00016041988,0.000002612428,0.04013683],"genre_scores_gemma":[0.98972756,0.0016567222,0.00075251097,0.00016174244,0.000082466715,0.000010169757,0.00034007363,0.000021766804,0.0072469935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99869865,0.00006154354,0.00026530965,0.00033818072,0.00043337533,0.00020295662],"domain_scores_gemma":[0.99949265,0.000023747616,0.00014344449,0.0002493049,5.7150373e-7,0.000090257694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000009966855,0.00019071683,0.00022702345,0.000018656568,0.000056313304,0.0000056365666,0.0001971242,0.00018008224,0.00001233392],"category_scores_gemma":[0.00000603041,0.00018838738,0.000026679809,0.00003891488,0.000042326865,0.000004790935,0.000098785094,0.00014185194,6.698594e-10],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004687058,0.000023001148,0.0039337687,0.00008300708,0.000019266785,0.000018190725,0.000012876546,0.0000051309526,0.99228305,0.0003775615,0.0002612146,0.0025142403],"study_design_scores_gemma":[0.00019384177,0.00006217122,0.026426574,0.000047717913,0.000005951278,0.000003988401,0.00019958135,0.000018620281,0.95785064,0.00014968777,0.014845908,0.00019535076],"about_ca_topic_score_codex":0.0008486282,"about_ca_topic_score_gemma":0.031792965,"teacher_disagreement_score":0.03443243,"about_ca_system_score_codex":0.0000026635528,"about_ca_system_score_gemma":0.0013328491,"threshold_uncertainty_score":0.9858743},"labels":[],"label_agreement":null},{"id":"W2650533887","doi":"10.3791/55187","title":"Inducible T7 RNA Polymerase-mediated Multigene Expression System, pMGX","year":2017,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; T7 RNA polymerase; Operon; Gene; Plasmid; Computational biology; Selectable marker; RNA polymerase; Escherichia coli; Synthetic biology; Genetics; RNA; Gene expression; Molecular biology; Bacteriophage","score_opus":0.024754739772440994,"score_gpt":0.3862084203359174,"score_spread":0.36145368056347643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2650533887","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960884,0.0019071321,0.00029814508,0.00008482263,0.0011081717,0.00013092748,0.000014593947,0.000010827013,0.00035699745],"genre_scores_gemma":[0.9967888,0.00039465041,0.0018793348,0.00008146894,0.0006083507,0.0000069524913,0.000021426844,0.00003145635,0.0001875621],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859583,0.000082426275,0.0005376429,0.00025743674,0.00024276378,0.0002838785],"domain_scores_gemma":[0.9981119,0.0000065627028,0.0009336854,0.0006286905,0.00014954594,0.00016962964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026562915,0.00020808664,0.0003406855,0.00010006989,0.00026462285,0.00010495972,0.00064683123,0.00038900622,0.00003980037],"category_scores_gemma":[0.00014592923,0.00016871381,0.0001616925,0.000035605553,0.00011206551,0.000013608153,0.00028179327,0.00015146054,0.000013440238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003890307,0.00016596592,0.0004048864,0.00001267679,0.000097860284,0.000023972369,0.00005208738,0.0000016371481,0.997001,0.000011283134,0.0009036449,0.00093594106],"study_design_scores_gemma":[0.0026040005,0.0005835376,0.0011087497,0.00009857121,0.000019911908,0.00005583858,0.0001755202,0.000021772114,0.983834,0.000003882859,0.011307423,0.0001867752],"about_ca_topic_score_codex":0.000028269886,"about_ca_topic_score_gemma":0.0000014690818,"teacher_disagreement_score":0.013166997,"about_ca_system_score_codex":0.000031613185,"about_ca_system_score_gemma":0.000084022184,"threshold_uncertainty_score":0.68799496},"labels":[],"label_agreement":null},{"id":"W2710170885","doi":"10.1074/jbc.m117.795294","title":"The phosphocarrier protein HPr of the bacterial phosphotransferase system globally regulates energy metabolism by directly interacting with multiple enzymes in Escherichia coli","year":2017,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Regina","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"PEP group translocation; Phosphoenolpyruvate carboxykinase; Allosteric regulation; Biochemistry; Glycolysis; Phosphofructokinase; Adenylate kinase; Phosphotransferase; Pyruvate kinase; Response regulator; Gluconeogenesis; Chemistry; Biology; Phosphofructokinase 1; Enzyme","score_opus":0.005525992882616797,"score_gpt":0.2004964974980599,"score_spread":0.1949705046154431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2710170885","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972577,0.0017174432,0.000018489915,0.00041997252,0.00028985346,0.000113881055,0.00004021615,0.000004592456,0.00013783517],"genre_scores_gemma":[0.99910486,0.00029841615,0.00018993834,0.00003342414,0.00022203477,0.000011280468,0.000008636383,0.000013025137,0.000118361764],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987057,0.000088369954,0.00053724996,0.00024003723,0.00015953748,0.00026912618],"domain_scores_gemma":[0.9984371,0.000039161212,0.00079445686,0.0004898773,0.00016714225,0.00007225143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036008138,0.0002180295,0.00035929098,0.000007783811,0.00021446073,0.00009426531,0.0010351497,0.00041506765,0.000009468993],"category_scores_gemma":[0.00044078717,0.000105517414,0.00017296342,0.000058712776,0.00045928315,0.00000766219,0.0002367805,0.00026903636,1.16928184e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013487965,0.00006387508,0.0011862133,0.00001850927,0.00009808067,0.0000061075843,0.000006794445,0.0000033605731,0.9964865,0.000036159283,0.000115496696,0.00063014386],"study_design_scores_gemma":[0.000977515,0.00020975315,0.0028896525,0.00012186053,0.000022076978,0.000043735174,0.00007161395,0.000011125677,0.9784419,0.000013359636,0.017051468,0.0001459645],"about_ca_topic_score_codex":0.00006618506,"about_ca_topic_score_gemma":0.000045415705,"teacher_disagreement_score":0.018044587,"about_ca_system_score_codex":0.000029252233,"about_ca_system_score_gemma":0.000114893795,"threshold_uncertainty_score":0.43028754},"labels":[],"label_agreement":null},{"id":"W2728560221","doi":"10.3103/s0891416817010037","title":"A Bacillus anthracis system for acquisition of heme-bound iron","year":2017,"lang":"en","type":"article","venue":"Molecular Genetics Microbiology and Virology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Innovation, Science and Economic Development Canada","keywords":"Bacillus anthracis; Siderophore; Heme; Biology; Intracellular; Transporter; Microbiology; Extracellular; Biochemistry; Cell biology; Bacteria; Gene; Genetics; Enzyme","score_opus":0.006547028197686915,"score_gpt":0.23257554820210832,"score_spread":0.22602852000442142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2728560221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897945,0.0034059621,0.005132599,0.00041153491,0.00047229024,0.0004033556,0.00022494463,0.000013483475,0.0001413519],"genre_scores_gemma":[0.99658465,0.00047784558,0.002271051,0.0001949579,0.00012913535,0.00003971831,0.0002097226,0.000031772073,0.00006114389],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99854106,0.00008722178,0.00034786412,0.0005934966,0.00003114224,0.00039921646],"domain_scores_gemma":[0.99863446,0.000013795276,0.00033599598,0.00082557247,0.00012370566,0.000066472],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022085721,0.00025364745,0.0003769172,0.00007288565,0.00030394996,0.000028756951,0.00044393187,0.000892834,0.000009963312],"category_scores_gemma":[0.000048028498,0.00025218268,0.0001271205,0.000023377084,0.00094440894,0.0000027317305,0.0004048397,0.0001011167,0.0000042664306],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033426034,0.000045997578,0.0006109906,0.000075904805,0.00009993466,0.0000059062613,0.000017355263,0.000010780737,0.9956163,0.0007858803,0.00009208303,0.0023045952],"study_design_scores_gemma":[0.0014233068,0.0015712492,0.0025049848,0.000012260503,0.00008309738,0.00018017013,0.0000182549,0.000040913495,0.9743558,0.00018265947,0.019363927,0.0002633697],"about_ca_topic_score_codex":0.0000114528575,"about_ca_topic_score_gemma":0.00003327797,"teacher_disagreement_score":0.021260504,"about_ca_system_score_codex":0.000009954066,"about_ca_system_score_gemma":0.000046187874,"threshold_uncertainty_score":0.999993},"labels":[],"label_agreement":null},{"id":"W2731121594","doi":"10.1371/journal.pone.0179181","title":"The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Institute for Fermentation, Osaka","keywords":"RNA polymerase; Escherichia coli; Sigma factor; Polymerase; Promoter; Molecular biology; Biology; Genetics; Gene; Gene expression","score_opus":0.029339907586109635,"score_gpt":0.2242635653351986,"score_spread":0.19492365774908896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2731121594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964538,0.00037107413,0.000008829385,0.0019801785,0.000104995655,0.000344958,0.000282927,0.0000041766302,0.00044901393],"genre_scores_gemma":[0.9984421,0.00025828733,0.0002771793,0.00006444494,0.00006488304,0.000016376973,0.000027447499,0.000011539759,0.0008377476],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992345,0.00006487558,0.00020852718,0.00019443447,0.000116374795,0.0001812762],"domain_scores_gemma":[0.9987211,0.000016470363,0.00034427037,0.0007418706,0.00013866945,0.000037596667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013935464,0.000118723336,0.00018956522,0.000010862879,0.00023515067,0.000025376488,0.00059456617,0.00020126275,0.0000070821548],"category_scores_gemma":[0.0002997964,0.00007612392,0.0000680632,0.00004196755,0.0007738819,0.0000024421615,0.0002784449,0.0001019126,0.0000017520779],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014018551,0.00015015711,0.0005978359,0.000020237036,0.00022177794,4.1594424e-7,0.000021242853,8.4577884e-8,0.99673593,0.000022643313,0.00038277433,0.0017067307],"study_design_scores_gemma":[0.0006039151,0.00026373373,0.0011918828,0.000043326374,0.00007892408,8.6734997e-7,0.000033215394,0.0000113508195,0.9944372,0.00005134142,0.0031855768,0.00009866741],"about_ca_topic_score_codex":0.00006506458,"about_ca_topic_score_gemma":0.00007244075,"teacher_disagreement_score":0.0028028025,"about_ca_system_score_codex":0.0000046909963,"about_ca_system_score_gemma":0.000097461336,"threshold_uncertainty_score":0.31042433},"labels":[],"label_agreement":null},{"id":"W2732372826","doi":"10.1007/978-1-4939-7033-9_10","title":"Defining Membrane Protein Topology Using pho-lac Reporter Fusions","year":2017,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Institut national de la recherche scientifique","keywords":"Periplasmic space; lac operon; Reporter gene; Cytoplasm; Fusion protein; Escherichia coli; Beta-galactosidase; Topology (electrical circuits); Biology; Molecular biology; Cell biology; Biochemistry; Gene; Gene expression","score_opus":0.028313689458862378,"score_gpt":0.38852352558201614,"score_spread":0.36020983612315377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2732372826","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78751147,0.0007513181,0.20859028,0.0007512108,0.0006827907,0.0003965081,0.00001576955,0.000023091023,0.0012775573],"genre_scores_gemma":[0.3817885,0.000084008054,0.61731565,0.00032659966,0.0001281744,0.000055589044,0.000056034834,0.00004355838,0.00020192306],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99730736,0.0006362458,0.0005287815,0.0008486384,0.000064149615,0.0006148092],"domain_scores_gemma":[0.99789196,0.000020847105,0.000392788,0.0015248662,0.000080258214,0.00008929468],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011411097,0.00030611546,0.00045389653,0.00015752982,0.00027817898,0.00004772909,0.0007449645,0.00102137,0.00005380643],"category_scores_gemma":[0.001114156,0.000292605,0.00015716498,0.000088377325,0.0006060855,0.0000039570264,0.00090479304,0.00028426942,0.00000502926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006570692,0.000048101476,0.0018079145,0.000010387487,0.000049153652,0.000056363708,0.000010549248,0.000011861125,0.9845753,0.0035585305,0.000010080731,0.009796097],"study_design_scores_gemma":[0.0006222313,0.00032422956,0.00050636736,0.000018194312,0.000023333445,0.00013805395,0.000019663115,0.00014039823,0.9749057,0.0035115934,0.01943433,0.00035587186],"about_ca_topic_score_codex":0.00022251646,"about_ca_topic_score_gemma":0.00012077914,"teacher_disagreement_score":0.40872532,"about_ca_system_score_codex":0.000023637424,"about_ca_system_score_gemma":0.000117927666,"threshold_uncertainty_score":0.9999526},"labels":[],"label_agreement":null},{"id":"W2734766965","doi":"10.3389/fmicb.2017.01329","title":"Bypassing the Need for the Transcriptional Activator EarA through a Spontaneous Deletion in the BRE Portion of the fla Operon Promoter in Methanococcus maripaludis","year":2017,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Operon; Promoter; Transcription (linguistics); Biology; Mutant; Methanococcus; Gene; Molecular biology; General transcription factor; Genetics; Gene expression; Escherichia coli","score_opus":0.012921021685351116,"score_gpt":0.24528596886589277,"score_spread":0.23236494718054165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2734766965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882395,0.00083679665,0.0018263092,0.0070995814,0.0009469938,0.00094872963,0.000059521924,0.000002275057,0.0000402758],"genre_scores_gemma":[0.9980817,0.00020660553,0.00092942925,0.00041758758,0.00011783454,0.000106036154,0.00005290237,0.000012192848,0.00007572906],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988307,0.00024634507,0.00030394076,0.0002830935,0.000041256124,0.00029466237],"domain_scores_gemma":[0.99913836,0.000028003944,0.00020357584,0.00058893196,0.000033132517,0.000007982436],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060541177,0.00014986715,0.00019717151,0.000036039473,0.00020283027,0.000031364612,0.00088520854,0.00040090262,0.0000050596623],"category_scores_gemma":[0.00010628806,0.00007313637,0.0001116596,0.00007895605,0.0005155028,0.000006846021,0.0001228214,0.00025983615,2.8847435e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003612188,0.00005390626,0.0033221035,0.000010247538,0.00003341958,0.000002476887,0.00030727554,0.000021258666,0.9901926,0.000077144876,0.0007026305,0.004915749],"study_design_scores_gemma":[0.0028867226,0.0005791855,0.14086528,0.000082168975,0.00007857016,0.00032881123,0.00153552,0.00028350498,0.739836,0.0019872515,0.11115657,0.00038041576],"about_ca_topic_score_codex":0.00017512814,"about_ca_topic_score_gemma":0.001090342,"teacher_disagreement_score":0.25035658,"about_ca_system_score_codex":0.00003640988,"about_ca_system_score_gemma":0.00007710598,"threshold_uncertainty_score":0.3092128},"labels":[],"label_agreement":null},{"id":"W2735481658","doi":"10.1093/nar/gkx596","title":"A novel nucleoid-associated protein coordinates chromosome replication and chromosome partition","year":2017,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Biology; Caulobacter crescentus; Genetics; DNA replication; Origin of replication; Chromosome; Control of chromosome duplication; Circular bacterial chromosome; Nucleoid; Origin recognition complex; Replication timing; Chromosome segregation; SeqA protein domain; Cell cycle; DNA; Gene; Eukaryotic DNA replication; Escherichia coli","score_opus":0.03945832663269889,"score_gpt":0.3278931529415173,"score_spread":0.2884348263088184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2735481658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955427,0.00015757115,0.000045345456,0.0026526665,0.00006517005,0.0005177611,0.000053322125,0.00003173767,0.0009336997],"genre_scores_gemma":[0.9977514,0.00024601427,0.0004333637,0.000042393756,0.0002276254,0.00010896086,0.00011092153,0.00003499671,0.0010442986],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99831444,0.0000828552,0.00020382284,0.00067408517,0.0002477908,0.00047700052],"domain_scores_gemma":[0.9981353,0.000009907574,0.00013427902,0.0013106044,0.00029163828,0.000118252894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085858774,0.00015268028,0.00017001535,0.00008077406,0.0007608598,0.0002421557,0.00055359775,0.0004908695,0.000044423752],"category_scores_gemma":[0.0009458339,0.00014684969,0.000046148503,0.000099621495,0.00065518933,0.0000135202545,0.0006663355,0.00028519475,0.00003454654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060716015,0.00011992752,0.0010905631,0.000017854498,0.000033522236,0.000002435683,0.000018130242,1.8055964e-7,0.9908525,0.0005290735,0.00055678183,0.0067183306],"study_design_scores_gemma":[0.0009846996,0.000888947,0.047683205,0.000049162616,0.000007932452,0.000018024775,0.000035099703,0.0001423037,0.9179723,0.00075967785,0.031218614,0.00023998499],"about_ca_topic_score_codex":0.000107241554,"about_ca_topic_score_gemma":0.00006971244,"teacher_disagreement_score":0.072880134,"about_ca_system_score_codex":0.000039451486,"about_ca_system_score_gemma":0.00007358251,"threshold_uncertainty_score":0.59883565},"labels":[],"label_agreement":null},{"id":"W2740773306","doi":"","title":"Evidence for a Dynamic Adaptor Complex between the P1 Plasmid and Bacterial Nucleoid Promoted by ParA and ParB Partition Proteins","year":2012,"lang":"en","type":"dissertation","venue":"TSpace","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto","keywords":"Nucleoid; Plasmid; Partition (number theory); Biology; Escherichia coli; Genetics; DNA; Mathematics; Gene; Combinatorics","score_opus":0.04569972072882648,"score_gpt":0.3337507423651693,"score_spread":0.2880510216363428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2740773306","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954134,0.0019627023,0.00010826292,0.00069040054,0.00017893537,0.001318725,0.00028572752,0.000019037625,0.00002276668],"genre_scores_gemma":[0.9924267,0.0010389554,0.00061271724,0.000028153052,0.00037464272,0.00024810244,0.004552629,0.000044712186,0.00067341945],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989086,0.00006154367,0.0002105422,0.0004331756,0.00008603028,0.00030012717],"domain_scores_gemma":[0.999335,0.000029403382,0.00021504425,0.00028054276,0.00006102776,0.00007896132],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016372022,0.00026957286,0.00025758488,0.000025852898,0.00015683677,0.000065102475,0.00016549128,0.0006486309,0.00001958567],"category_scores_gemma":[0.00007754919,0.00021301187,0.000052440355,0.00004158887,0.00012739992,0.0000048046318,0.00007257105,0.00014536642,0.0000016322501],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004708919,0.000022334283,0.00007254637,0.00012108783,0.00006652289,1.5467074e-7,0.00012758494,4.4967084e-8,0.9938059,0.0000076124206,0.00095342833,0.0043519177],"study_design_scores_gemma":[0.0011727399,0.0016026583,0.036891382,0.00022970137,0.0003368948,0.000013109173,0.00033646435,0.00008243957,0.8434347,0.00008794664,0.11505363,0.0007583196],"about_ca_topic_score_codex":0.000046553432,"about_ca_topic_score_gemma":0.00023235683,"teacher_disagreement_score":0.15037116,"about_ca_system_score_codex":0.0000121731855,"about_ca_system_score_gemma":0.00005401237,"threshold_uncertainty_score":0.86863714},"labels":[],"label_agreement":null},{"id":"W2740997657","doi":"10.1038/s41598-017-08213-5","title":"Characterization of C-terminal structure of MinC and its implication in evolution of bacterial cell division","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; National Synchrotron Radiation Research Center; National Natural Science Foundation of China","keywords":"Thermotoga maritima; Cell division; Division (mathematics); Cell; Cell biology; Biology; Cell growth; Computational biology; Asymmetric cell division; Helix (gastropod); Chemistry; Escherichia coli; Genetics; Gene","score_opus":0.005236908973407638,"score_gpt":0.2271776574439628,"score_spread":0.22194074847055514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2740997657","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99887997,0.000056921454,0.0000428578,0.000012143904,0.0008137231,0.0001438802,0.000031748616,0.0000011801028,0.000017563842],"genre_scores_gemma":[0.9996202,0.000018202445,0.000086554,4.17035e-7,0.000029647104,0.0000012482587,0.00019085479,0.0000042105203,0.00004869032],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992003,0.000015658808,0.00033766538,0.0002768909,0.000087522654,0.00008196514],"domain_scores_gemma":[0.99864846,0.0000012418757,0.00071373314,0.0004827887,0.00013492079,0.000018822497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018475976,0.000063553336,0.00012786336,0.0000724681,0.00005103816,0.000018932767,0.000110897265,0.00016007996,0.000008248786],"category_scores_gemma":[0.000055263194,0.000059000788,0.000025398545,0.000047678637,0.00016795228,0.000008077322,0.0001347147,0.000026487087,6.972249e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002528315,0.00003022793,0.010886225,0.000048132075,0.0000024963308,9.192997e-7,0.000020991993,6.984324e-7,0.9879514,0.000016278986,0.0000046785685,0.0010126509],"study_design_scores_gemma":[0.00010980267,0.00007514511,0.20617467,0.000016353182,0.0000048217535,0.000009350922,0.0000042191245,0.000014066866,0.7931434,0.00016593128,0.00024086959,0.00004136799],"about_ca_topic_score_codex":0.000015330135,"about_ca_topic_score_gemma":0.000025494877,"teacher_disagreement_score":0.19528845,"about_ca_system_score_codex":0.000005415751,"about_ca_system_score_gemma":0.000056020916,"threshold_uncertainty_score":0.24059822},"labels":[],"label_agreement":null},{"id":"W2743410431","doi":"10.1099/mgen.0.000127","title":"Broad-scale redistribution of mRNA abundance and transcriptional machinery in response to growth rate in Salmonella enterica serovar Typhimurium","year":2017,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada; Science Foundation Ireland","keywords":"Biology; Sigma factor; Transcription (linguistics); RNA polymerase; Salmonella enterica; rpoS; Exponential growth; Gene; Gene expression; Transcriptional regulation; Bacterial transcription; Cell biology; Genetics; RNA; Promoter; Escherichia coli","score_opus":0.0061772835491154515,"score_gpt":0.2186365147117336,"score_spread":0.21245923116261814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2743410431","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980212,0.00017073342,0.00023049412,0.00088734407,0.00018594626,0.00016872042,0.00028623975,0.0000032454043,0.000046116096],"genre_scores_gemma":[0.9985071,0.00025967395,0.00086222484,0.00009652233,0.0000819235,0.0000046969685,0.00009286287,0.000013402286,0.00008159332],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913394,0.0000665023,0.00025726843,0.00030962809,0.000030783507,0.0002018666],"domain_scores_gemma":[0.99952424,0.0000046579953,0.000098957324,0.00028768243,0.000039980925,0.000044482473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003139307,0.00012586408,0.00017770565,0.00007269041,0.000055720797,0.000029230763,0.00024784557,0.00021988424,0.0000033653691],"category_scores_gemma":[0.000048553095,0.00013898645,0.000038961072,0.00004869725,0.00013918408,0.0000039314928,0.00016325265,0.00009786619,0.0000020968173],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019321551,0.000055927685,0.0021265217,0.000012648445,0.0000072512316,0.0000028405761,0.00006223019,0.000014014246,0.99514246,0.00002966355,0.000096221724,0.00051809225],"study_design_scores_gemma":[0.0009036296,0.00022711112,0.18553934,0.000018194496,0.00000457071,0.000011780664,0.000010605556,0.000020220426,0.8057954,0.00007255054,0.007246625,0.00015001421],"about_ca_topic_score_codex":0.00014740431,"about_ca_topic_score_gemma":0.0005116766,"teacher_disagreement_score":0.18934706,"about_ca_system_score_codex":0.000034658755,"about_ca_system_score_gemma":0.00005723342,"threshold_uncertainty_score":0.5667703},"labels":[],"label_agreement":null},{"id":"W2744027325","doi":"10.1111/mmi.13765","title":"Functional redundancy of division specific penicillin‐binding proteins in <i>Bacillus subtilis</i>","year":2017,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Emergent BioSolutions (Canada)","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; European Commission","keywords":"Biology; Bacillus subtilis; Redundancy (engineering); Penicillin binding proteins; Penicillin; Microbiology; Division (mathematics); Cell division; Computational biology; Cell biology; Bacteria; Biochemistry; Genetics; Antibiotics; Cell; Computer science","score_opus":0.011967626142000705,"score_gpt":0.22105916406284118,"score_spread":0.20909153792084048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2744027325","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961925,0.0008731058,0.001107195,0.00028272546,0.00046916836,0.0003172855,0.000075915756,0.000008539949,0.0006735371],"genre_scores_gemma":[0.9979416,0.0002445107,0.0010423375,0.00006646056,0.00008177996,0.00001889178,0.00030987582,0.000025126415,0.0002694155],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99854606,0.00008122782,0.00037997292,0.0005625261,0.00005588603,0.00037433713],"domain_scores_gemma":[0.99867976,0.0000055978794,0.00027850582,0.00090199447,0.00008790415,0.000046213034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022692214,0.00021917453,0.00029962117,0.00010830334,0.00013765362,0.000028708268,0.000536321,0.00054495316,0.0000663444],"category_scores_gemma":[0.0000779338,0.00021401339,0.00013890659,0.000061468265,0.00042251704,0.000004273689,0.00048470715,0.00018582871,0.000025691308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011458774,0.000081851926,0.0022632016,0.00001192416,0.000024335595,0.000016128995,0.0000087212065,0.000013959301,0.99448305,0.00029464747,0.00027410433,0.002413471],"study_design_scores_gemma":[0.0009083918,0.0003450185,0.007276178,0.000024219355,0.0000065268,0.000043691653,0.000009732971,0.0000026268742,0.94932324,0.00010323133,0.04173727,0.00021986781],"about_ca_topic_score_codex":0.00002600923,"about_ca_topic_score_gemma":0.000049537208,"teacher_disagreement_score":0.045159824,"about_ca_system_score_codex":0.000021043925,"about_ca_system_score_gemma":0.000052130283,"threshold_uncertainty_score":0.87272125},"labels":[],"label_agreement":null},{"id":"W2754748029","doi":"10.1002/1873-3468.12840","title":"Phosphorylation of bacterial L9 and its functional implication in response to starvation stress","year":2017,"lang":"en","type":"letter","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Beijing Technology and Business University; Chinese Academy of Sciences; Institute of Biophysics, Chinese Academy of Sciences; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Phosphorylation; CTD; Cell biology; Biology; Escherichia coli; Chemistry; Biochemistry; Gene","score_opus":0.01194845302508117,"score_gpt":0.2302818021562845,"score_spread":0.21833334913120334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2754748029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8202732,0.00006967414,0.00008167722,0.1786134,0.00041875482,0.0003000795,0.0002282178,0.0000058930614,0.000009065249],"genre_scores_gemma":[0.9341856,0.000094093215,0.00030841,0.05855393,0.0024019596,0.00008200794,0.004025151,0.000051781615,0.00029702787],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988365,0.00008622088,0.0002823011,0.00045689702,0.00012944495,0.0002086445],"domain_scores_gemma":[0.9991955,0.000017108623,0.00025775176,0.00042090594,0.00008000148,0.000028688568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019504098,0.00019698445,0.0002082419,0.00016178799,0.000050555343,0.00003740022,0.0002043712,0.00078834366,0.000022307011],"category_scores_gemma":[0.00011545698,0.00021137533,0.00004674612,0.000053025127,0.000058900067,0.000005526566,0.00013538015,0.00025543556,0.0000050167114],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068405306,0.000010170762,0.00024074364,0.00003265173,0.000020848838,0.000004184213,0.000016242093,0.000010699069,0.89837635,0.000002717428,0.10004061,0.0005607592],"study_design_scores_gemma":[0.0006094661,0.000279052,0.0541679,0.00005531954,0.000020077894,0.000007938237,0.0000040183845,0.000008009229,0.4947038,0.000013546456,0.44982284,0.00030802083],"about_ca_topic_score_codex":0.000029218001,"about_ca_topic_score_gemma":0.000031073025,"teacher_disagreement_score":0.40367252,"about_ca_system_score_codex":0.000031428503,"about_ca_system_score_gemma":0.00006011467,"threshold_uncertainty_score":0.86196357},"labels":[],"label_agreement":null},{"id":"W2758265385","doi":"10.1016/j.mib.2017.09.005","title":"Chemical genomics reveals mechanistic hypotheses for uncharacterized bioactive molecules in bacteria","year":2017,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Institute for Journalism and Natural Resources","keywords":"Biology; Computational biology; Drug discovery; Bottleneck; Genomics; Chemical genetics; Transposable element; Functional genomics; Biotechnology; Biochemical engineering; Small molecule; Genetics; Bioinformatics; Genome; Gene; Computer science","score_opus":0.1109944140564655,"score_gpt":0.37605542022826177,"score_spread":0.2650610061717963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2758265385","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0041387044,0.98601305,0.0001897427,0.000039503673,0.005480805,0.001953589,0.0021589906,0.000015835347,0.0000097793545],"genre_scores_gemma":[0.0002522911,0.9892076,0.0010600688,0.000017574841,0.00082282926,0.00052790786,0.007999148,0.00008729131,0.000025292687],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968831,0.00024374256,0.0010134972,0.0011568976,0.000032836713,0.0006699048],"domain_scores_gemma":[0.99820495,0.00007090715,0.00076933287,0.00081155606,0.000071290415,0.000071958595],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00031764846,0.0006682391,0.001801475,0.00031901756,0.00006180497,0.00005181846,0.000956855,0.0017305213,0.000018087618],"category_scores_gemma":[0.00031348167,0.0006147584,0.00043419446,0.000100618796,0.00028550564,0.000003890504,0.00053448725,0.00045166028,0.000019199604],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001285711,0.00015434617,0.0000062270374,0.0034550973,0.00008682222,9.680138e-7,0.00000827763,9.4699494e-8,0.6793271,0.00010958268,0.0003323019,0.31639063],"study_design_scores_gemma":[0.00080482167,0.00018605111,0.000010253593,0.0020443434,0.000061251005,0.00005984984,0.00000398622,0.0000012973877,0.0077865645,0.00016529675,0.9882333,0.0006429277],"about_ca_topic_score_codex":0.000004416157,"about_ca_topic_score_gemma":0.000006976909,"teacher_disagreement_score":0.98790103,"about_ca_system_score_codex":0.00014124787,"about_ca_system_score_gemma":0.00036097513,"threshold_uncertainty_score":0.9996304},"labels":[],"label_agreement":null},{"id":"W2759107848","doi":"10.1016/j.ab.2017.09.012","title":"Streamlined purification of fluorescently labeled Escherichia coli phosphate-binding protein (PhoS) suitable for rapid-kinetics applications","year":2017,"lang":"en","type":"article","venue":"Analytical Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"","keywords":"Phos; Kinetics; Enzyme kinetics; Chemistry; Escherichia coli; Phosphate; Biochemistry; Periplasmic space; Fluorescence; Cytosol; Affinity chromatography; Chromatography; Enzyme; Active site","score_opus":0.012762541484669614,"score_gpt":0.2630833367802607,"score_spread":0.2503207952955911,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2759107848","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99590325,0.00027716102,0.0015421062,0.0005577845,0.000057120793,0.0009034772,0.00022892059,0.000020561867,0.00050961843],"genre_scores_gemma":[0.99161273,0.00012786951,0.0051618605,0.00002895409,0.00023808653,0.0002892602,0.00059593085,0.00003062768,0.0019146664],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99856424,0.000013926893,0.00040326023,0.00052649336,0.00012969453,0.00036238428],"domain_scores_gemma":[0.99812335,0.000014752694,0.00035097002,0.0011141968,0.0002705776,0.00012612705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018320173,0.00022208155,0.00027279163,0.000030025765,0.00021286281,0.00007469906,0.00065106025,0.0005636768,0.000029469042],"category_scores_gemma":[0.00033525768,0.0002222614,0.0001503578,0.00008662888,0.00033585163,0.000004854569,0.00019948809,0.00012344927,0.0000060346165],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013721046,0.00022949121,0.00025860718,0.000107639156,0.000092572445,3.6470587e-7,0.0000019942079,8.7252516e-7,0.9949463,0.00059065985,0.00038081987,0.0032534644],"study_design_scores_gemma":[0.0007889946,0.00025212785,0.0001932714,0.000023972594,0.000076730816,0.0000011210603,0.00002105591,0.00019771668,0.9791022,0.0001036733,0.01899529,0.00024385646],"about_ca_topic_score_codex":0.000011876767,"about_ca_topic_score_gemma":0.000004849606,"teacher_disagreement_score":0.018614471,"about_ca_system_score_codex":0.000022955432,"about_ca_system_score_gemma":0.000109615394,"threshold_uncertainty_score":0.9063557},"labels":[],"label_agreement":null},{"id":"W2760901615","doi":"10.24870/cjb.2017-a146","title":"Y-shaped morphology in E.coli may be linked to peptidoglycan synthesis Pathway","year":2017,"lang":"en","type":"article","venue":"Canadian Journal of Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Peptidoglycan; Morphology (biology); Chemistry; Cell biology; Microbiology; Biology; Cell wall; Zoology; Biochemistry","score_opus":0.016078914822602167,"score_gpt":0.2358855755249101,"score_spread":0.21980666070230792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2760901615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9675857,0.0003009352,0.00014937161,0.030748792,0.0007511734,0.00018432038,0.00005493295,0.000012128143,0.00021264936],"genre_scores_gemma":[0.99707866,0.00021578188,0.0013949076,0.00081730064,0.00026756412,0.000013094675,0.0000043786013,0.000043977776,0.00016434558],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982668,0.000062164196,0.00051693316,0.00039255703,0.00008418725,0.00067732023],"domain_scores_gemma":[0.9980627,0.000014311296,0.0004034642,0.00096115895,0.00012809879,0.00043029696],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00038657014,0.00024357732,0.00044861337,0.00075074635,0.00022007499,0.0000687194,0.0015173052,0.0014549021,0.00008187101],"category_scores_gemma":[0.0011288053,0.00024112072,0.00013258924,0.00014921176,0.00061345997,0.0000071652703,0.0001979048,0.0004897531,0.00002349308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007701307,0.000023504712,0.003336322,0.0000058469714,0.000048146387,0.00032821854,0.000026438229,0.0000045094935,0.9805356,0.0005897982,0.00086035253,0.0141642485],"study_design_scores_gemma":[0.0008400112,0.001285006,0.030228788,0.000058432317,0.000026293908,0.00069290766,0.00015027782,0.0000103452985,0.7016007,0.00030069795,0.2643557,0.00045085387],"about_ca_topic_score_codex":0.0033007984,"about_ca_topic_score_gemma":0.08155651,"teacher_disagreement_score":0.2789349,"about_ca_system_score_codex":0.00008842473,"about_ca_system_score_gemma":0.0009273987,"threshold_uncertainty_score":0.9998414},"labels":[],"label_agreement":null},{"id":"W2765748851","doi":"10.1016/j.chembiol.2017.09.006","title":"B. subtilis LytR-CpsA-Psr Enzymes Transfer Wall Teichoic Acids from Authentic Lipid-Linked Substrates to Mature Peptidoglycan In Vitro","year":2017,"lang":"en","type":"article","venue":"Cell chemical biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Peptidoglycan; Teichoic acid; Lipid II; In vitro; Bacillus subtilis; Enzyme; Chemistry; Biochemistry; Biology; Bacteria","score_opus":0.008782582299783886,"score_gpt":0.2306065068993161,"score_spread":0.22182392459953224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2765748851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99621034,0.0007042929,0.00004601545,0.0016144278,0.00043333773,0.0003002308,0.00025488483,0.000034270026,0.00040217402],"genre_scores_gemma":[0.99640787,0.00023033343,0.0009650078,0.0005491891,0.0006027916,0.00004871775,0.0008005858,0.000044445176,0.00035108507],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99774635,0.00008727349,0.0004264688,0.0009711101,0.000077674034,0.0006911188],"domain_scores_gemma":[0.99850506,0.000038342783,0.00009439215,0.0010824328,0.00006580525,0.00021395486],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00016629748,0.0004032276,0.0004780507,0.00008198492,0.0001164199,0.00005702825,0.0011201813,0.0017413476,0.00009839895],"category_scores_gemma":[0.00015246042,0.00035997012,0.00018071872,0.00008509194,0.00037817896,0.0000053317526,0.00034098647,0.00046306345,0.00006004778],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004886573,0.00012327054,0.002816195,0.00001581833,0.000037796217,0.000007055733,0.000063318315,5.124751e-7,0.9944183,0.000046786896,0.00025389955,0.0017283607],"study_design_scores_gemma":[0.0010363972,0.00022477796,0.0033424005,0.000012823227,0.000028510252,0.000005140988,0.000030004607,0.000010767647,0.9688819,0.0004955315,0.025500147,0.00043156734],"about_ca_topic_score_codex":0.00021206246,"about_ca_topic_score_gemma":0.00019308757,"teacher_disagreement_score":0.025536397,"about_ca_system_score_codex":0.000035455578,"about_ca_system_score_gemma":0.00007675597,"threshold_uncertainty_score":0.9998852},"labels":[],"label_agreement":null},{"id":"W2766165445","doi":"10.1073/pnas.1706849114","title":"Evolutionary and molecular foundations of multiple contemporary functions of the nitroreductase superfamily","year":2017,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":144,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Extant taxon; Computational biology; Biology; SUPERFAMILY; Function (biology); Evolutionary biology; Nitroreductase; Flavin group; Functional diversity; Enzyme; Genetics; Biochemistry; Ecology; Gene","score_opus":0.035861630254125934,"score_gpt":0.28335327456754184,"score_spread":0.24749164431341591,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2766165445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963328,0.00032993185,0.0000017838946,0.0021542113,0.000032367123,0.00012011161,0.00008297426,0.0000011549508,0.00094463734],"genre_scores_gemma":[0.9991949,0.000052131832,0.00062183663,0.00004647197,0.000028972996,0.0000042438373,9.1848847e-7,0.0000022739748,0.000048217396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993477,0.000005621546,0.00020191165,0.00014269893,0.00023883797,0.000063230815],"domain_scores_gemma":[0.99929535,0.000013285103,0.00039860947,0.000028462233,0.0002506058,0.000013677593],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026978398,0.000055749617,0.00008914315,0.000041639545,0.00023087829,0.000008458946,0.0005869895,0.00010249643,0.0000016851377],"category_scores_gemma":[0.00044536934,0.00003523476,0.000060475628,0.000103385166,0.002040406,0.000015542424,0.00025940698,0.000060174883,6.573811e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014646226,0.000029434794,0.021950345,0.000017803075,0.00001728331,9.1623703e-10,0.0000119430015,0.0000062914273,0.9743034,0.0032388372,0.00033521256,0.000074781514],"study_design_scores_gemma":[0.00014352557,0.00006038667,0.16644152,0.000021427626,0.000008965699,0.000003081094,0.000069496964,0.00006869689,0.82857984,0.004066451,0.0005023195,0.000034307144],"about_ca_topic_score_codex":0.00001827407,"about_ca_topic_score_gemma":2.7914467e-7,"teacher_disagreement_score":0.1457236,"about_ca_system_score_codex":0.0000035728297,"about_ca_system_score_gemma":0.000059674065,"threshold_uncertainty_score":0.7517961},"labels":[],"label_agreement":null},{"id":"W2766888512","doi":"10.1074/jbc.m117.805945","title":"Dissecting the role of conformational change and membrane binding by the bacterial cell division regulator MinE in the stimulation of MinD ATPase activity","year":2017,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; University of Ottawa","keywords":"ATP hydrolysis; Conformational change; Biophysics; Cell division; ATPase; Protein–lipid interaction; Membrane; Cell membrane; Cell biology; Stimulation; Biochemistry; Binding site; Biology; Chemistry; Cell; Membrane protein; Enzyme; Integral membrane protein; Neuroscience","score_opus":0.02263477099027372,"score_gpt":0.25304507601211185,"score_spread":0.23041030502183812,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2766888512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99913293,0.00028957732,0.000005205285,0.0003137596,0.000056531946,0.00008726616,0.000035444038,4.4067346e-7,0.000078820085],"genre_scores_gemma":[0.99956584,0.00014874402,0.00003148619,0.000009682963,0.00020917991,0.0000019105732,0.000019488645,0.0000026355256,0.000011032404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99940896,0.00004432658,0.00026492047,0.00008854086,0.00009800832,0.000095225136],"domain_scores_gemma":[0.99898636,0.00006043772,0.00065623526,0.00020042212,0.00007649811,0.000020037414],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045672248,0.000084475454,0.00014561185,0.000009080412,0.00010724104,0.000025459818,0.00034303084,0.00020667654,0.000014148709],"category_scores_gemma":[0.0002143573,0.00003803154,0.000061957835,0.000025556139,0.00024574017,0.000007981811,0.0001310433,0.00014332987,6.7214515e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001820376,0.000051676838,0.00651835,0.000012667203,0.000011605372,3.480051e-7,0.000042214535,0.000002103389,0.98986006,0.0000023011805,0.000008411921,0.0033082142],"study_design_scores_gemma":[0.00038227366,0.00018069519,0.045594707,0.000016441272,0.000010268987,0.000017341808,0.00015569317,0.00006137879,0.9527283,0.000026907179,0.00077946996,0.000046550813],"about_ca_topic_score_codex":0.000009366525,"about_ca_topic_score_gemma":0.00000232414,"teacher_disagreement_score":0.039076358,"about_ca_system_score_codex":0.000004791161,"about_ca_system_score_gemma":0.000014794839,"threshold_uncertainty_score":0.15940787},"labels":[],"label_agreement":null},{"id":"W2768421721","doi":"10.1038/nbt.4024","title":"Global landscape of cell envelope protein complexes in Escherichia coli","year":2017,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University; University of Saskatchewan; Armand Frappier Museum; Hospital for Sick Children; Institut National de la Recherche Scientifique; University of Toronto; University of Regina","funders":"National Institute of General Medical Sciences","keywords":"Periplasmic space; Bacterial outer membrane; Escherichia coli; Interactome; Cell envelope; Inner membrane; Membrane transport protein; Transport protein; Membrane protein; Biology; Biochemistry; Cell biology; Chemistry; Membrane; Gene","score_opus":0.005441096643477696,"score_gpt":0.23624589579844313,"score_spread":0.23080479915496543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2768421721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99441665,0.0011880066,0.00006626281,0.0018456357,0.00025477045,0.0003161647,0.00007258359,0.000031899755,0.0018079983],"genre_scores_gemma":[0.9954338,0.00025356424,0.003920693,0.00009720092,0.00008769995,0.000018465378,0.000041776344,0.000016357797,0.00013043928],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987607,0.000030770738,0.00027506662,0.0004901548,0.00009320723,0.00035010176],"domain_scores_gemma":[0.99856126,0.0000031463744,0.0002733123,0.0010556796,0.000066327564,0.0000402963],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00013820616,0.00021298917,0.00030699465,0.000094163544,0.00009789261,0.00002426642,0.0010140962,0.0028627664,0.000020120518],"category_scores_gemma":[0.00016881,0.00019875572,0.00007224057,0.00015041282,0.00046093285,0.0000035006117,0.0006204501,0.00044100714,0.000005950713],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011339293,0.0000975126,0.0066037183,0.000024634941,0.000018790886,0.000007473505,0.0000027185406,0.0000010674017,0.98819214,0.0026213613,0.00035433014,0.0019628792],"study_design_scores_gemma":[0.0008090222,0.00037330596,0.03651245,0.000016140899,0.000006876498,0.0000075376815,0.000019462148,0.000008376575,0.92357194,0.00055901014,0.037908614,0.00020726326],"about_ca_topic_score_codex":0.000060634695,"about_ca_topic_score_gemma":0.0004932215,"teacher_disagreement_score":0.06462018,"about_ca_system_score_codex":0.000016320937,"about_ca_system_score_gemma":0.0000936704,"threshold_uncertainty_score":0.99843174},"labels":[],"label_agreement":null},{"id":"W2769357315","doi":"10.1007/978-1-4939-7459-7_9","title":"Detection of oriC-Independent Replication in Escherichia coli Cells","year":2017,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"DnaA; Origin of replication; SeqA protein domain; Escherichia coli; DNA replication; Biology; Molecular biology; Cell division; Mutant; Chemistry; Cell biology; DNA; Cell; Genetics; Gene","score_opus":0.017376050168996855,"score_gpt":0.3509963497282101,"score_spread":0.33362029955921324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2769357315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7685341,0.00025824786,0.2302799,0.000105183,0.000331029,0.0002162649,0.0000060166335,0.0000054339935,0.00026378944],"genre_scores_gemma":[0.8243487,0.0002282963,0.17520694,0.000061191124,0.00004188193,0.000039498093,0.000018009157,0.00001597926,0.00003953548],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99836785,0.00040233613,0.00037208424,0.00055880676,0.000045630437,0.00025330024],"domain_scores_gemma":[0.998356,0.0000146747925,0.0002863858,0.0012538699,0.000056467088,0.000032623106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010391591,0.00015015049,0.00026353102,0.00012537748,0.000047023706,0.000013177889,0.00048758063,0.0006285737,0.000005082833],"category_scores_gemma":[0.00046271924,0.00015147965,0.00007233674,0.00010029237,0.00019143565,0.0000022530653,0.0003034447,0.00017861684,0.0000015971352],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007109597,0.00005896635,0.0020152042,0.000009368988,0.000014700238,0.0000030573206,0.000008624807,0.000014755916,0.9691495,0.0002952693,0.0000015677134,0.028357891],"study_design_scores_gemma":[0.00051195954,0.00031897,0.009153893,0.000006040965,0.0000069327134,0.0000034834318,0.0000113461,0.00009111753,0.98461956,0.0014176386,0.003707303,0.00015177633],"about_ca_topic_score_codex":0.00019167947,"about_ca_topic_score_gemma":0.0001879924,"teacher_disagreement_score":0.055814523,"about_ca_system_score_codex":0.000022968074,"about_ca_system_score_gemma":0.000042458843,"threshold_uncertainty_score":0.6177161},"labels":[],"label_agreement":null},{"id":"W2769646093","doi":"10.1186/s12896-017-0394-x","title":"AFEAP cloning: a precise and efficient method for large DNA sequence assembly","year":2017,"lang":"en","type":"article","venue":"BMC Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Illinois at Urbana-Champaign; Agricultural University of Hebei; NYU Langone Medical Center; Jiangnan University; York University; Hebei Agricultural University","keywords":"Biology; Cloning (programming); Computational biology; Sequence (biology); DNA; Genetics; DNA sequencing; Evolutionary biology; Computer science; Programming language","score_opus":0.026992949770977822,"score_gpt":0.31845932792567416,"score_spread":0.29146637815469634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2769646093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8193077,0.00061637553,0.17614678,0.0025394782,0.00041322425,0.00060753146,0.0001280522,0.00008748485,0.00015336215],"genre_scores_gemma":[0.8687431,0.0002643986,0.1302257,0.00012868017,0.00017313304,0.0001018142,0.000046712616,0.000037334543,0.00027910882],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983084,0.00004150861,0.00025005796,0.00077668554,0.0000720456,0.00055127614],"domain_scores_gemma":[0.9983518,0.000025733681,0.00024331706,0.0012203653,0.00008044246,0.000078320736],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00043619788,0.00025186865,0.00029241788,0.00010123358,0.00044480487,0.00008381669,0.0007275008,0.0013776344,0.000005225567],"category_scores_gemma":[0.00056679256,0.0002352765,0.00010251922,0.000053772605,0.00031085784,0.000003214845,0.0008116217,0.00018410604,0.000005922124],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011838807,0.00006210957,0.00042335712,0.000032251013,0.000028021053,0.0000031355075,0.000007633826,0.0000037530824,0.98105603,0.008066946,0.00022051547,0.00997785],"study_design_scores_gemma":[0.0010900112,0.000587999,0.0015316093,0.0000144250425,0.000031985866,0.00009697582,0.000030669904,0.001846551,0.90042746,0.0005275929,0.093514144,0.00030057164],"about_ca_topic_score_codex":0.000017669227,"about_ca_topic_score_gemma":0.00015377736,"teacher_disagreement_score":0.09329363,"about_ca_system_score_codex":0.0000141758,"about_ca_system_score_gemma":0.00008469188,"threshold_uncertainty_score":0.99991876},"labels":[],"label_agreement":null},{"id":"W2771042176","doi":"10.1016/j.mib.2017.10.017","title":"More than a Tad: spatiotemporal control of Caulobacter pili","year":2017,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; CPA Australia; Partenariat Canadien Contre Le Cancer; Royal College of Pathologists of Australasia","keywords":"Pilus; Caulobacter crescentus; Biology; Obligate; Microbiology; Flagellum; Secretion; Cell biology; Neisseria; Genetics; Bacteria; Gene; Bacterial protein; Virulence; Biochemistry","score_opus":0.07135607877365877,"score_gpt":0.37605767302515536,"score_spread":0.30470159425149657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2771042176","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009280754,0.99140394,0.00007212576,0.000060094506,0.0056196526,0.00077439036,0.0011133164,0.000009512937,0.000018888377],"genre_scores_gemma":[0.0021694242,0.99258184,0.00006271906,0.000009350717,0.00077817193,0.00007934587,0.0042198137,0.000044565626,0.00005479086],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976387,0.00024088875,0.00089413725,0.00074665644,0.000042529184,0.0004371139],"domain_scores_gemma":[0.99791974,0.000019482977,0.0009339806,0.0009794105,0.00008840082,0.000058981346],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00024613057,0.0005018806,0.0015575495,0.00022613312,0.000050754308,0.000018432753,0.00084289367,0.0014633893,0.000023559785],"category_scores_gemma":[0.00008527659,0.00042072398,0.00046388165,0.00008388531,0.00048534415,0.0000025159627,0.0003774881,0.00043706992,0.000019410034],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009426431,0.00028751016,0.00049365085,0.008711142,0.0002799751,0.0000016630352,0.000018061135,5.602102e-7,0.024362575,0.00007736432,0.0035793753,0.96209383],"study_design_scores_gemma":[0.00067032664,0.00026740038,0.00006081292,0.0025427355,0.00007010017,0.000058311765,0.0000028077202,6.372386e-7,0.0005209371,0.000009704301,0.9953988,0.00039742872],"about_ca_topic_score_codex":0.000021688675,"about_ca_topic_score_gemma":0.000022173752,"teacher_disagreement_score":0.99181944,"about_ca_system_score_codex":0.000032865533,"about_ca_system_score_gemma":0.0003434301,"threshold_uncertainty_score":0.9998329},"labels":[],"label_agreement":null},{"id":"W2773999015","doi":"10.7554/elife.33383","title":"Plasmid-powered evolutionary transitions","year":2017,"lang":"en","type":"letter","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Plasmid; Virulence; Pathogen; Biology; Rhodococcus equi; Genetics; Strain (injury); Bacteria; Microbiology; Computational biology; Gene","score_opus":0.011013490441664562,"score_gpt":0.23572186714981352,"score_spread":0.22470837670814897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2773999015","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.026633088,0.0021004435,0.00021043951,0.9606653,0.0030057116,0.0004541838,0.0011805177,0.00008875193,0.005661604],"genre_scores_gemma":[0.09846504,0.0026516647,0.0020720093,0.807363,0.03489281,0.00017827962,0.0259441,0.00027523914,0.02815786],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99859357,0.000042591786,0.00021899438,0.0005404715,0.00018315321,0.0004212199],"domain_scores_gemma":[0.9987682,0.0000037357734,0.00010334151,0.0009721699,0.000102867234,0.00004966669],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00006685741,0.00028896012,0.0002498427,0.000069303365,0.00023776043,0.00005327664,0.0005718735,0.0022429659,0.00013613966],"category_scores_gemma":[0.000034406403,0.00025261033,0.00019920734,0.000019510173,0.00023513811,0.0000017732816,0.00017513032,0.00067169516,0.00018035277],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013463892,0.00001418441,0.000004198222,0.000015295742,0.00006825661,0.00004861505,0.0000040910345,7.3151347e-7,0.24804193,0.000005150047,0.7516081,0.0001760399],"study_design_scores_gemma":[0.00023279595,0.00015357794,0.000060265356,0.000015660544,0.000035404166,0.00006845677,0.0000020152265,0.0000026251091,0.1145772,0.00004816859,0.8844883,0.0003155564],"about_ca_topic_score_codex":0.000011881052,"about_ca_topic_score_gemma":0.000010429355,"teacher_disagreement_score":0.15330227,"about_ca_system_score_codex":0.000015869691,"about_ca_system_score_gemma":0.0001321908,"threshold_uncertainty_score":0.9999926},"labels":[],"label_agreement":null},{"id":"W2775498852","doi":"10.1088/1361-6633/aaa628","title":"Fundamental principles in bacterial physiology—history, recent progress, and the future with focus on cell size control: a review","year":2018,"lang":"en","type":"article","venue":"Reports on Progress in Physics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Pew Charitable Trusts; National Science Foundation","keywords":"Section (typography); Focus (optics); Cell size; Field (mathematics); Bacterial cell structure; Work (physics)","score_opus":0.007459599433751659,"score_gpt":0.23069862169649047,"score_spread":0.2232390222627388,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2775498852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9724497,0.022864854,0.0000011572773,0.002010663,0.00065340527,0.0013644178,0.000011451739,0.000019033361,0.0006252743],"genre_scores_gemma":[0.9895817,0.008440151,0.00018968532,0.0005015544,0.0009490243,0.00022433152,0.000032423988,0.000029712906,0.000051430878],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984372,0.00013868388,0.00037582085,0.0005875568,0.00015129174,0.00030943216],"domain_scores_gemma":[0.9989228,0.000016172835,0.00035861804,0.00057587813,0.0000819762,0.000044511813],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031364206,0.00026317654,0.00038245262,0.000021197286,0.000048851794,0.000019378998,0.00015790256,0.00021796848,0.000015950562],"category_scores_gemma":[0.000025197169,0.00016403628,0.00005484643,0.00010183256,0.0009926425,0.0000040679583,0.00011184662,0.00021756273,0.0000018418441],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0307209,0.006035233,0.062843904,0.0016822601,0.00054580264,0.0006531984,0.00039550834,0.000008804011,0.26152804,0.006710573,0.004961096,0.62391466],"study_design_scores_gemma":[0.008284051,0.0057342406,0.033649277,0.0010534063,0.00009590809,0.00014721439,0.00003220368,0.000020956664,0.1346221,0.00093424396,0.8145843,0.00084210705],"about_ca_topic_score_codex":0.000003676392,"about_ca_topic_score_gemma":0.000049597864,"teacher_disagreement_score":0.8096232,"about_ca_system_score_codex":0.000052648385,"about_ca_system_score_gemma":0.00012717296,"threshold_uncertainty_score":0.6689205},"labels":[],"label_agreement":null},{"id":"W2780021300","doi":"10.1002/pmic.201700285","title":"Importance of the RpoE Regulon in Maintaining the Lipid Bilayer during Antimicrobial Treatment with the Polycationic Agent, Chlorhexidine","year":2017,"lang":"en","type":"article","venue":"PROTEOMICS","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada; McMaster University; Brockhouse Institute for Materials Research; Canadian Light Source (Canada); University of Saskatchewan","funders":"","keywords":"Regulon; Microbiology; Antimicrobial; Mutant; Escherichia coli; Sigma factor; Biology; Population; rpoS; SOS response; Multiple drug resistance; Biofilm; Wild type; Bacteria; Chemistry; Biochemistry; Drug resistance; Genetics; Gene","score_opus":0.00992873512766748,"score_gpt":0.22641740207208466,"score_spread":0.21648866694441718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2780021300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992751,0.00006964066,0.000028021766,0.0063750064,0.00010150129,0.00059000304,0.00001038885,0.0000035546889,0.0000708786],"genre_scores_gemma":[0.99889064,0.0002576489,0.0002478851,0.00008780039,0.00017442308,0.000058207956,0.0000058436954,0.00001445414,0.00026312034],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993651,0.00003212279,0.0001542367,0.0002094201,0.000053347405,0.0001857567],"domain_scores_gemma":[0.99876344,0.000003884146,0.00026647185,0.00092330563,0.000029183304,0.000013696429],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014813308,0.000120601195,0.00010637014,0.000013384995,0.0003122804,0.000041654162,0.00053625624,0.00010226951,0.0000023202379],"category_scores_gemma":[0.000025944495,0.00005433235,0.00005575839,0.000046362333,0.00027681564,0.0000028283891,0.0002263264,0.00009501799,6.848353e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013896453,0.000029308787,0.020404065,0.000005279328,0.000030156929,6.441153e-7,0.000057678193,0.000031722135,0.9787059,0.00005688462,0.00001597084,0.0005234173],"study_design_scores_gemma":[0.000528827,0.00015568457,0.07138823,0.000015473432,0.000012684753,0.000016421583,0.0000305102,0.000022324035,0.9258906,0.000022161814,0.0018378053,0.0000792368],"about_ca_topic_score_codex":0.00008345915,"about_ca_topic_score_gemma":0.0010259098,"teacher_disagreement_score":0.052815266,"about_ca_system_score_codex":0.000027426924,"about_ca_system_score_gemma":0.000079568825,"threshold_uncertainty_score":0.240184},"labels":[],"label_agreement":null},{"id":"W2780844801","doi":"10.1016/j.jsb.2017.12.009","title":"Structural characterization of SpoIIIAB sporulation-essential protein in Bacillus subtilis","year":2017,"lang":"en","type":"article","venue":"Journal of Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Institute of General Medical Sciences; Canada Research Chairs","keywords":"Bacillus subtilis; Flagellum; Biology; Cell biology; Secretion; Bacteria; Biochemistry; Genetics","score_opus":0.00815202670245554,"score_gpt":0.25031979299445895,"score_spread":0.2421677662920034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2780844801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99863124,0.00010917919,0.000032280674,0.00031327462,0.0006988844,0.00014155982,0.00004553904,0.0000020860543,0.000025962696],"genre_scores_gemma":[0.9988848,0.00006184653,0.00044343524,0.000017637247,0.00045982303,0.0000012644421,0.00008889893,0.000010196263,0.00003211771],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988951,0.00005570292,0.0005746394,0.00018854342,0.00008036671,0.00020564295],"domain_scores_gemma":[0.9983744,0.000003975236,0.0010496731,0.00031792335,0.00020761302,0.0000463882],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016032363,0.00015155051,0.0003246615,0.00011754651,0.00008320174,0.000025035433,0.00044963753,0.00037664856,0.0000492626],"category_scores_gemma":[0.00012923355,0.00011803805,0.00010770344,0.00004647436,0.000288605,0.00001592059,0.00014490989,0.00016469532,5.8284024e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030080383,0.0000068905892,0.034335468,0.000012682652,0.000032274424,0.000004503347,0.000017248754,0.0000052079204,0.9565744,0.00019294425,0.0000019269303,0.008515658],"study_design_scores_gemma":[0.0007139914,0.00043654197,0.4099784,0.00001666438,0.000009687511,0.0000675921,0.0000074483887,0.000040862094,0.58751196,0.00068002095,0.00042791732,0.000108935485],"about_ca_topic_score_codex":0.000029602072,"about_ca_topic_score_gemma":0.000050574054,"teacher_disagreement_score":0.37564293,"about_ca_system_score_codex":0.0000146044595,"about_ca_system_score_gemma":0.00007747497,"threshold_uncertainty_score":0.48134518},"labels":[],"label_agreement":null},{"id":"W2789279693","doi":"10.1007/s00294-018-0811-2","title":"Perspective: challenges and opportunities for the study of cardiolipin, a key player in bacterial cell structure and function","year":2018,"lang":"en","type":"review","venue":"Current Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Cardiolipin; Perspective (graphical); Key (lock); Function (biology); Proteomics; Computational biology; Cell function; Cell biology; Data science; Cell; Genetics; Computer science; Ecology","score_opus":0.0964208023771219,"score_gpt":0.3205231510030116,"score_spread":0.22410234862588968,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2789279693","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08232342,0.915402,0.000011739452,0.000015940324,0.00089279027,0.0011313637,0.0002060756,0.000003369841,0.000013308215],"genre_scores_gemma":[0.021940468,0.97697926,0.000028656475,0.0000033271886,0.00083111605,0.000080109014,0.000087349756,0.000033714336,0.000016024745],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987833,0.0001170062,0.00034357776,0.0004864353,0.00007695599,0.00019274291],"domain_scores_gemma":[0.9991957,0.000027128488,0.0002243543,0.00038723942,0.00012434924,0.000041262138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014116924,0.00031550252,0.0006175188,0.00008758311,0.00005322374,0.000023591723,0.0001975622,0.0004435818,0.0000024962576],"category_scores_gemma":[0.000020186282,0.00022245402,0.000095093055,0.000037705115,0.0001876885,0.0000013868253,0.00028118418,0.00015046245,1.0628489e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008629555,0.00012518762,0.0000111401705,0.0028938258,0.0002292317,4.4340436e-7,0.0003250958,5.8789965e-7,0.0013604976,0.000054766464,0.00019354647,0.9947194],"study_design_scores_gemma":[0.0006442929,0.0015963386,0.0001869298,0.00023657261,0.0005237139,0.000008766558,0.00086390134,0.0000030220976,0.00032497378,0.0000520102,0.9952952,0.00026423665],"about_ca_topic_score_codex":0.0000028467095,"about_ca_topic_score_gemma":0.00007144137,"teacher_disagreement_score":0.9951017,"about_ca_system_score_codex":0.000013601332,"about_ca_system_score_gemma":0.00010782173,"threshold_uncertainty_score":0.9071412},"labels":[],"label_agreement":null},{"id":"W2790315963","doi":"10.1016/j.str.2018.02.007","title":"Structural and Functional Insights into Bacillus subtilis Sigma Factor Inhibitor, CsfB","year":2018,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Biotechnology and Biological Sciences Research Council; Wellcome Trust; British Heart Foundation; Francis Crick Institute; Medical Research Council Canada; National Institutes of Health; Cancer Research UK","keywords":"Sigma factor; Bacillus subtilis; Dimer; Sigma; Chemistry; RNA polymerase; Zinc finger; Mutagenesis; Gene; Computational biology; Biology; Genetics; Biochemistry; RNA; Mutation; Bacteria; Physics","score_opus":0.006433236544349752,"score_gpt":0.20782648067977819,"score_spread":0.20139324413542845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2790315963","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977353,0.0006788571,0.00006241964,0.0001756134,0.001041823,0.00011069532,0.000059738948,0.000021947013,0.000113573115],"genre_scores_gemma":[0.9971672,0.000059370803,0.000547102,0.0002307584,0.0016511295,0.0000023922441,0.00016486013,0.000019841667,0.00015729512],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990501,0.000025853344,0.00015544432,0.00043949118,0.00010732596,0.00022178495],"domain_scores_gemma":[0.9994434,0.0000032071268,0.00006053848,0.0002873693,0.00011620196,0.00008928467],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000017227869,0.00020920187,0.0001427884,0.000048956183,0.0001754843,0.000040679122,0.00012456019,0.0004969719,0.0002117318],"category_scores_gemma":[0.000032447522,0.00016619211,0.000044547418,0.0000854785,0.00037808024,0.0000047230956,0.0001997409,0.00013914845,0.000004329491],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006574292,0.000003044229,0.00086804945,0.000008611574,0.00003340791,0.000001097539,0.000100423604,7.5917353e-7,0.99028546,0.00018643579,0.00065167097,0.0077952887],"study_design_scores_gemma":[0.0005315341,0.00051001884,0.04456158,0.00000448739,0.000012043844,0.00003719491,0.000044328994,0.000029184192,0.8747459,0.0020981592,0.077138945,0.0002865924],"about_ca_topic_score_codex":0.000018628827,"about_ca_topic_score_gemma":0.00028762626,"teacher_disagreement_score":0.115539536,"about_ca_system_score_codex":0.000011963321,"about_ca_system_score_gemma":0.000048937738,"threshold_uncertainty_score":0.6777117},"labels":[],"label_agreement":null},{"id":"W2791655484","doi":"10.1038/s41467-018-03547-8","title":"Crystal structure of an intramembranal phosphatase central to bacterial cell-wall peptidoglycan biosynthesis and lipid recycling","year":2018,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Research Council Canada; Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Saskatchewan; Canadian Light Source","keywords":"Lipid II; Peptidoglycan; Periplasmic space; Cell wall; Cytoplasm; Biosynthesis; Biochemistry; Chemistry; Biology; Cell biology; Escherichia coli; Enzyme; Gene","score_opus":0.007068419378141171,"score_gpt":0.24902898542232987,"score_spread":0.2419605660441887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791655484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99751496,0.00065659836,0.000041403404,0.00080555695,0.00024402999,0.0001712616,0.00045966337,0.000013750232,0.0000927506],"genre_scores_gemma":[0.9828939,0.00038146213,0.015211453,0.0002858905,0.00039062338,0.0000033372403,0.0008030415,0.000018313769,0.000011990367],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913526,0.00008202177,0.00021424553,0.00027951508,0.000069043475,0.00021990293],"domain_scores_gemma":[0.9984235,0.000017294515,0.000099779485,0.0012012193,0.00012929802,0.00012889133],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007537472,0.00014501542,0.00015699153,0.00006279953,0.00014749121,0.00003329502,0.00071839866,0.00056800403,0.000036966034],"category_scores_gemma":[0.00009275122,0.00013888256,0.000040844814,0.00013172012,0.0003000837,0.0000054011302,0.00043321346,0.00027037333,0.0000010948438],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012826938,0.000066185166,0.0002579689,0.000006656517,0.00002446008,1.3856555e-7,0.00006933318,9.936462e-7,0.9960934,0.00021969675,0.00025532857,0.002877593],"study_design_scores_gemma":[0.00025693624,0.00040964969,0.003950953,0.000009947029,0.00002774771,0.0000070825413,0.000047762212,0.00003912067,0.8928457,0.00003211991,0.10221417,0.00015883081],"about_ca_topic_score_codex":0.000047937836,"about_ca_topic_score_gemma":0.0015423261,"teacher_disagreement_score":0.103247695,"about_ca_system_score_codex":0.000009581418,"about_ca_system_score_gemma":0.00006123278,"threshold_uncertainty_score":0.56634665},"labels":[],"label_agreement":null},{"id":"W2791819078","doi":"10.1016/j.bpj.2017.11.2932","title":"Spatial Distribution of H-NS in E. coli under Environmental Stress","year":2018,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Osmotic shock; Nucleoid; Biophysics; DNA; DNA condensation; Osmotic pressure; Heat shock protein; Bacteria; Biology; Intracellular; Cold-shock domain; Bacillus subtilis; Cell biology; Shock (circulatory); Chemistry; Biochemistry; Escherichia coli; Genetics; Gene; RNA","score_opus":0.005933457484719892,"score_gpt":0.219166338457271,"score_spread":0.2132328809725511,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791819078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979342,0.00001955255,0.0015487511,0.00012498694,0.00020281396,0.000044949567,0.00009110053,0.0000018968151,0.00003173891],"genre_scores_gemma":[0.99892336,0.0000808879,0.00006599832,0.0000320781,0.00078726094,0.0000011290182,0.00008250144,0.000006643264,0.00002016323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99941397,0.00003087976,0.00017432235,0.00013414987,0.00008584314,0.00016084276],"domain_scores_gemma":[0.9997283,0.000002521436,0.00008205981,0.00011690801,0.000020235886,0.000049943483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047783396,0.000081768696,0.00010350542,0.000020044039,0.0000379817,0.000010435309,0.00012845713,0.00015530427,0.00003074206],"category_scores_gemma":[0.000008605435,0.00007127205,0.000058021207,0.0000431209,0.00024730613,0.0000018281403,0.00008448618,0.000101813195,0.000007571629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009399864,0.00016603983,0.0014247737,0.0000016627606,0.000014440459,0.0000018275663,0.0000062791737,0.0000031447912,0.9960623,0.00007939926,0.0000800178,0.0020661396],"study_design_scores_gemma":[0.0004039986,0.00068214344,0.10445869,0.00000763288,0.0000066502166,0.000014327732,0.000027381957,0.000048738846,0.89226586,0.00008238465,0.0019192013,0.00008300243],"about_ca_topic_score_codex":0.0000151222075,"about_ca_topic_score_gemma":0.00002306542,"teacher_disagreement_score":0.10379643,"about_ca_system_score_codex":0.000018448038,"about_ca_system_score_gemma":0.000025734307,"threshold_uncertainty_score":0.29063898},"labels":[],"label_agreement":null},{"id":"W2792198805","doi":"10.1016/j.sbi.2018.03.006","title":"Translocation of lipoproteins to the surface of gram negative bacteria","year":2018,"lang":"en","type":"review","venue":"Current Opinion in Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Ministère de l’Éducation, Gouvernement de l’Ontario; Canada Research Chairs","keywords":"Bacterial outer membrane; Chromosomal translocation; Bacteria; Biology; Microbiology; Immune system; Gram-negative bacteria; Cell biology; Escherichia coli; Biochemistry; Immunology; Gene; Genetics","score_opus":0.0520591152276264,"score_gpt":0.36917725343115304,"score_spread":0.31711813820352663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792198805","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.032343514,0.96108025,0.00007599684,0.00006888585,0.004747858,0.0011136606,0.0005584488,0.000005703957,0.000005679716],"genre_scores_gemma":[0.015929041,0.9819053,0.00048315548,0.0000042241754,0.00060213555,0.00004365821,0.0010065451,0.00002087226,0.0000051148336],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99813527,0.00027958714,0.00078444043,0.00048346192,0.000063658656,0.00025356794],"domain_scores_gemma":[0.9987528,0.000029477658,0.0005077033,0.0005336699,0.00013504692,0.000041336854],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019423325,0.00031936765,0.00085392245,0.00010339613,0.00003114803,0.000006168693,0.0006174622,0.0006568382,0.000020393005],"category_scores_gemma":[0.00010000862,0.00020315622,0.00022622604,0.00031131716,0.00036699037,0.0000017273389,0.00022321925,0.0002135713,0.0000047007966],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006828722,0.000026345286,0.000029406823,0.0026127158,0.00009232365,2.5179897e-8,0.00006582305,0.000002397657,0.03240364,0.00038042062,0.0002379628,0.96408063],"study_design_scores_gemma":[0.0002283612,0.00076212024,0.00013288551,0.0016213148,0.000036265366,0.000008208495,0.000010862317,0.000002675985,0.017410375,0.00017065839,0.9793428,0.00027347181],"about_ca_topic_score_codex":0.000043664288,"about_ca_topic_score_gemma":0.000035818553,"teacher_disagreement_score":0.9791048,"about_ca_system_score_codex":0.000018053457,"about_ca_system_score_gemma":0.00015565386,"threshold_uncertainty_score":0.828447},"labels":[],"label_agreement":null},{"id":"W2792434828","doi":"","title":"Minimization of Escherichia coli genome using a bidirectional deletion system","year":2004,"lang":"en","type":"article","venue":"Genome","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Biology; Escherichia coli; Genome; Genetics; Escherichia coli Proteins; Computational biology; Gene","score_opus":0.009850532530428523,"score_gpt":0.21185966961697492,"score_spread":0.2020091370865464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792434828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904133,0.0004261879,0.008566795,0.00004156511,0.0002050163,0.00010516074,0.000035857087,0.000017871831,0.0001882669],"genre_scores_gemma":[0.9920536,0.00008175885,0.0073818974,0.000031928572,0.00022967019,0.000006570353,0.0001442749,0.000016534643,0.000053724823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99933076,0.000021234262,0.00020520354,0.00021791177,0.00007366316,0.00015122618],"domain_scores_gemma":[0.99957085,0.0000011785247,0.00011396469,0.00018514587,0.00009271413,0.000036166897],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007221132,0.000100809215,0.00012333086,0.00005942694,0.000054475615,0.000009151479,0.00010418448,0.00022121836,0.0000104549],"category_scores_gemma":[0.00000950778,0.00010453945,0.00005461878,0.00013940549,0.000058399462,0.0000017650406,0.00006352671,0.000041976557,0.000005648191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035957248,0.00003087797,0.0000468224,0.000025688367,0.000030284262,8.273644e-7,0.000014626336,0.0030849427,0.9964227,0.00021338678,0.0000010502145,0.00009280811],"study_design_scores_gemma":[0.0009570652,0.00044268716,0.015279842,0.000021281867,0.000048276448,0.000056691308,0.00009650123,0.00014850072,0.9638494,0.000063860076,0.018724356,0.000311537],"about_ca_topic_score_codex":0.000036880283,"about_ca_topic_score_gemma":0.000007991443,"teacher_disagreement_score":0.032573327,"about_ca_system_score_codex":0.00004832878,"about_ca_system_score_gemma":0.00009517348,"threshold_uncertainty_score":0.4262995},"labels":[],"label_agreement":null},{"id":"W2792587268","doi":"10.1101/284836","title":"Finding reliable phenotypes and detecting artefacts among <i>in vivo</i> and <i>in vitro</i> assays to characterize the refractory transcriptional activator Sxy (TfoX) in <i>Escherichia coli</i>","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Promoter; cAMP receptor protein; Gene; Genetics; Escherichia coli; Phenotype; Protein–DNA interaction; Gene expression; Transcription factor; DNA-binding protein","score_opus":0.009988848419739614,"score_gpt":0.20095512258620082,"score_spread":0.1909662741664612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792587268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99736804,0.00069813535,0.000046971625,0.00031102897,0.00056076836,0.0008023856,0.0001662928,0.000036098092,0.000010295366],"genre_scores_gemma":[0.9965847,0.0007431546,0.0014734052,0.00052748516,0.0003804541,0.00019428783,0.0000015115625,0.00008946345,0.0000055159194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99721044,0.00015895622,0.00056924985,0.0011694967,0.00018269311,0.0007091604],"domain_scores_gemma":[0.9987186,0.000040065184,0.00026780975,0.00067584135,0.000116614014,0.00018106989],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008735897,0.0005223076,0.00053110206,0.00024206759,0.00012443059,0.00016351155,0.00040951095,0.0010405217,0.0000078670255],"category_scores_gemma":[0.00020481995,0.0005062361,0.000061146144,0.00043018677,0.00023289061,0.000021849046,0.0005218597,0.00084900577,0.0000024750068],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003129439,0.0000843785,0.009965273,0.00009585404,0.000032612166,0.000012467141,0.000021855876,0.000010685826,0.9894048,0.000008935422,0.00003773479,0.000012486746],"study_design_scores_gemma":[0.0006052745,0.000108241715,0.19581147,0.00020869735,0.000018528375,7.3080564e-8,0.000008018745,0.00006568711,0.79310596,0.0000021737983,0.009568821,0.00049706106],"about_ca_topic_score_codex":0.00017385956,"about_ca_topic_score_gemma":0.00017998723,"teacher_disagreement_score":0.19629881,"about_ca_system_score_codex":0.00011220185,"about_ca_system_score_gemma":0.0002728777,"threshold_uncertainty_score":0.99973893},"labels":[],"label_agreement":null},{"id":"W2793327475","doi":"10.1074/jbc.ra118.001875","title":"SbnI is a free serine kinase that generates -phospho-l-serine for staphyloferrin B biosynthesis in","year":2018,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Genome British Columbia; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Serine; Biosynthesis; Biochemistry; Biology; Protein-Serine-Threonine Kinases; Mutant; Thermococcus; Phosphoserine; Kinase; Transferase; Enzyme; Gene; Protein kinase A; Archaea","score_opus":0.022120804818357605,"score_gpt":0.24995021101223186,"score_spread":0.22782940619387426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793327475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972994,0.0009808509,0.00017334383,0.0010011692,0.00017635974,0.000111748064,0.00010902768,0.000007996935,0.00014012435],"genre_scores_gemma":[0.9935633,0.0010299498,0.0038726137,0.00035063087,0.0009694279,0.000010422931,0.0000280815,0.000018334873,0.00015723406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987197,0.00002609379,0.0004596772,0.00034054863,0.00010031661,0.00035367793],"domain_scores_gemma":[0.99898255,0.000024819012,0.00029143828,0.00037463382,0.00020679095,0.000119739714],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029570423,0.00023648386,0.0003607834,0.000041697993,0.000050612318,0.000026804611,0.00056926976,0.00060452597,0.00019167736],"category_scores_gemma":[0.00030138294,0.00017267023,0.00020832512,0.00012198443,0.00025958667,0.000003987117,0.00025957532,0.00017765135,0.0000023191596],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006573616,0.00013420166,0.0032533673,0.000025735457,0.000056251694,0.00001199054,0.000007785429,0.0000010045666,0.9918104,0.0000058629635,0.0016051399,0.0024308923],"study_design_scores_gemma":[0.0010075078,0.001127385,0.0025079176,0.000024228326,0.000013266788,0.00007013156,0.0000447101,0.0000140244165,0.9369225,0.0003170908,0.05773288,0.00021839047],"about_ca_topic_score_codex":0.0000075284756,"about_ca_topic_score_gemma":0.000012635504,"teacher_disagreement_score":0.056127742,"about_ca_system_score_codex":0.000025577274,"about_ca_system_score_gemma":0.00006802831,"threshold_uncertainty_score":0.70412874},"labels":[],"label_agreement":null},{"id":"W2793446791","doi":"10.3389/fmicb.2018.00044","title":"Exposure to Sub-lethal 2,4-Dichlorophenoxyacetic Acid Arrests Cell Division and Alters Cell Surface Properties in Escherichia coli","year":2018,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation","keywords":"FtsZ; SOS response; Escherichia coli; DNA damage; Cell division; Cell; Biology; Bacteria; Cell biology; Biophysics; DNA repair; Filamentation; Cell membrane; Microbiology; DNA; Biochemistry; Genetics; Gene","score_opus":0.0048792138340606455,"score_gpt":0.18769182150641228,"score_spread":0.18281260767235163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793446791","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99416596,0.0033211433,0.0005790411,0.00029077253,0.0011207596,0.00040770668,0.000029838353,0.000013710202,0.00007108926],"genre_scores_gemma":[0.9908869,0.00041625358,0.007997853,0.00033773936,0.000113522925,0.000016032121,0.0000574423,0.00003230041,0.00014193942],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982524,0.00015577268,0.00032372016,0.00068025227,0.000037133603,0.0005507242],"domain_scores_gemma":[0.99941295,0.000004580658,0.000081573475,0.00035857235,0.00005260679,0.00008973128],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002123179,0.00027455552,0.00033779044,0.00012730576,0.000061703526,0.000022730828,0.00032445687,0.0006023561,0.0000071396657],"category_scores_gemma":[0.000029871204,0.0002540618,0.00003979816,0.00019248687,0.0004219149,0.000004179986,0.0003672263,0.0002119187,0.000013673777],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021806631,0.000094592375,0.019705137,0.0000275978,0.0000101238475,0.000006595282,0.00019212144,0.000029383616,0.97676855,9.317691e-7,0.002368043,0.0005788237],"study_design_scores_gemma":[0.0009581823,0.0012581049,0.0054428102,0.00002356351,0.000006737934,0.000007896047,0.00017093815,0.000021684777,0.98092943,0.000018913093,0.010836013,0.00032570914],"about_ca_topic_score_codex":0.00004262081,"about_ca_topic_score_gemma":0.00017796477,"teacher_disagreement_score":0.014262328,"about_ca_system_score_codex":0.000035458106,"about_ca_system_score_gemma":0.00006432719,"threshold_uncertainty_score":0.9999912},"labels":[],"label_agreement":null},{"id":"W2793520355","doi":"10.3389/fmicb.2018.00307","title":"Analyzing AbrB-Knockout Effects through Genome and Transcriptome Sequencing of Bacillus licheniformis DW2","year":2018,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Simon Fraser University; Natural Science Foundation of Hubei Province; National Natural Science Foundation of China","keywords":"Transcriptome; Bacillus licheniformis; Biology; Genetics; Genome; Computational biology; Gene; Bacteria; Bacillus subtilis; Gene expression","score_opus":0.005708186962103321,"score_gpt":0.21090720438668942,"score_spread":0.2051990174245861,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793520355","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98849624,0.004244338,0.006038029,0.000085176034,0.00070369506,0.00021064712,0.000047415324,0.000011711314,0.00016273666],"genre_scores_gemma":[0.98260784,0.00088521856,0.01596455,0.0001626801,0.00017482272,0.0000085779,0.00009083167,0.000021319647,0.00008415258],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987002,0.00008130916,0.0003301289,0.00046613358,0.00002357639,0.000398625],"domain_scores_gemma":[0.999471,0.000007546679,0.00011421042,0.000304282,0.00006213099,0.000040802977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016693365,0.00020990966,0.00038447007,0.00012946215,0.00005580181,0.0000086019345,0.00024614643,0.00056080014,0.000009885892],"category_scores_gemma":[0.000037250207,0.00019946863,0.000074103285,0.00016485488,0.00063727895,0.0000047878657,0.00013611263,0.00014006646,0.0000026653618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010421035,0.000018833913,0.0038057624,0.000049127742,0.00008597681,0.0000033256558,0.00018697164,0.0000015875461,0.9934336,0.000034088967,0.0002682768,0.0020082362],"study_design_scores_gemma":[0.0008370335,0.00084563746,0.0018524721,0.000022427714,0.000029866756,0.00006109679,0.0000981642,0.000011992407,0.9670801,0.00025968353,0.028648986,0.0002525388],"about_ca_topic_score_codex":0.000040033567,"about_ca_topic_score_gemma":0.000057501315,"teacher_disagreement_score":0.028380709,"about_ca_system_score_codex":0.00003414761,"about_ca_system_score_gemma":0.000057603964,"threshold_uncertainty_score":0.8134095},"labels":[],"label_agreement":null},{"id":"W2794333460","doi":"10.1016/j.sbi.2018.02.008","title":"Secretins revealed: structural insights into the giant gated outer membrane portals of bacteria","year":2018,"lang":"en","type":"review","venue":"Current Opinion in Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Bacteria; Bacterial outer membrane; Chemistry; Biophysics; Biology; Computational biology; Cell biology; Microbiology; Biochemistry; Escherichia coli; Genetics; Gene","score_opus":0.0376574569622638,"score_gpt":0.34805870666616423,"score_spread":0.31040124970390043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794333460","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09202067,0.8965793,0.000005863733,0.00005690125,0.010131624,0.0008701449,0.00030010362,0.000018257553,0.000017115352],"genre_scores_gemma":[0.019390158,0.973282,0.0002245987,0.000016985161,0.001755011,0.00004602701,0.0052117337,0.000052818636,0.00002068483],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99639034,0.0005482602,0.00139714,0.0009987041,0.00012308189,0.0005424485],"domain_scores_gemma":[0.997712,0.00004603582,0.0009785601,0.0009976896,0.00016974121,0.00009595713],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002245074,0.0007325379,0.0015087362,0.00023516608,0.00010866358,0.000028698587,0.001107457,0.0014575293,0.00011180864],"category_scores_gemma":[0.00012240729,0.00043493282,0.00044961192,0.0003521663,0.00091450097,0.0000055622513,0.00071451376,0.00056320184,0.000012387109],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022404743,0.00004541465,0.00026543663,0.011295557,0.000663546,0.0000026253413,0.00035487005,8.3338153e-7,0.12207058,0.0014338284,0.0013767475,0.86226654],"study_design_scores_gemma":[0.00038201493,0.00042451583,0.0002528943,0.0014709875,0.00008704472,0.000060019407,0.000012981704,0.000007285648,0.004189971,0.000283094,0.99225366,0.0005755125],"about_ca_topic_score_codex":0.00003406459,"about_ca_topic_score_gemma":0.000037648017,"teacher_disagreement_score":0.9908769,"about_ca_system_score_codex":0.000042587333,"about_ca_system_score_gemma":0.00024080838,"threshold_uncertainty_score":0.99983877},"labels":[],"label_agreement":null},{"id":"W2795292973","doi":"10.1038/nature25985","title":"Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis","year":2018,"lang":"en","type":"article","venue":"Nature","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":140,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Thermus thermophilus; Biology; Peptidoglycan; Transmembrane domain; Genetics; Cell biology; Gene; Escherichia coli","score_opus":0.0024887002416239387,"score_gpt":0.21763831476075635,"score_spread":0.21514961451913242,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2795292973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996367,0.002292089,0.000054922075,0.0006147892,0.00023757326,0.00007812543,0.000278987,0.0000072963717,0.00006922299],"genre_scores_gemma":[0.9983522,0.000051541607,0.00037425844,0.00039546928,0.0003347444,0.0000010070136,0.00016582101,0.000010432218,0.00031449526],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992972,0.000018593912,0.00013849433,0.0002657945,0.00011880867,0.00016110938],"domain_scores_gemma":[0.9993317,0.0000035883477,0.00010025124,0.00040737947,0.00012463423,0.000032445],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000038055685,0.00011450257,0.00013054677,0.00004506382,0.00009439158,0.000007838942,0.00033350702,0.0014205583,0.00006219639],"category_scores_gemma":[0.000042753734,0.00007978653,0.00012584521,0.0003835277,0.00022117171,0.0000011155119,0.00015893878,0.00045415934,7.512418e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051157134,0.000015514435,0.003111486,0.0000030320434,0.00017468494,1.7767944e-7,0.000008456136,0.000013312194,0.98986477,0.0000446167,0.006471087,0.00024169576],"study_design_scores_gemma":[0.00017707096,0.00011207649,0.012395872,0.0000037839577,0.00011583668,0.000003819355,0.00001846485,0.00010763126,0.9474481,0.00004945844,0.03946008,0.00010785021],"about_ca_topic_score_codex":0.000027672719,"about_ca_topic_score_gemma":0.0001411765,"teacher_disagreement_score":0.042416725,"about_ca_system_score_codex":0.000008405528,"about_ca_system_score_gemma":0.00004905478,"threshold_uncertainty_score":0.9998758},"labels":[],"label_agreement":null},{"id":"W2795616778","doi":"10.1186/s13068-018-1095-y","title":"Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics","year":2018,"lang":"en","type":"article","venue":"Biotechnology for Biofuels","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Biological and Environmental Research; Office of Science; UT-Battelle; Oak Ridge National Laboratory; Joint Genome Institute; Battelle; U.S. Department of Energy","keywords":"Clostridium thermocellum; Biochemistry; Bioprocess; Clostridium; Thermophile; Zymomonas mobilis; Biology; Chemistry; Metabolic engineering; Fermentation; Ethanol fuel; Bacteria; Enzyme; Cellulase","score_opus":0.008800911395302166,"score_gpt":0.2292376206276599,"score_spread":0.22043670923235772,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2795616778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9763234,0.002939743,0.014609826,0.0034677328,0.0007542943,0.00076594367,0.00085003744,0.00015198195,0.0001370113],"genre_scores_gemma":[0.9800614,0.005700436,0.012424932,0.0007566916,0.00025308444,0.000083289284,0.00037239317,0.00007064472,0.00027711652],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99814343,0.000024180248,0.00038989715,0.0007156403,0.000085776875,0.0006410962],"domain_scores_gemma":[0.99898297,0.000015118535,0.00016786253,0.00061948685,0.000108136184,0.00010640539],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001975649,0.00037603948,0.00037212798,0.00018314194,0.00021710547,0.00004516132,0.0005201048,0.002016742,0.00002404188],"category_scores_gemma":[0.00010251277,0.00035128946,0.00013789856,0.0002362735,0.0010023274,0.000007122601,0.00024063667,0.00019735479,0.000012589151],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022344652,0.00005595351,0.000015218658,0.000023925262,0.00012077566,4.718379e-7,0.00001929568,2.6114986e-8,0.95151204,0.0027348169,0.001747438,0.043546602],"study_design_scores_gemma":[0.0008658984,0.001240597,0.000015678723,0.0000043727173,0.000048916896,0.00002415874,0.00005980827,0.0000147974915,0.68815905,0.002528278,0.30673376,0.00030469574],"about_ca_topic_score_codex":0.0000114974455,"about_ca_topic_score_gemma":0.000039401064,"teacher_disagreement_score":0.30498633,"about_ca_system_score_codex":0.000019611774,"about_ca_system_score_gemma":0.00009794526,"threshold_uncertainty_score":0.9998939},"labels":[],"label_agreement":null},{"id":"W2796092606","doi":"10.1128/aem.00275-18","title":"The Protease ClpXP and the PAS Domain Protein DivL Regulate CtrA and Gene Transfer Agent Production in Rhodobacter capsulatus","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Rhodobacter; Gene transfer; Biology; Protease; Gene; Bacterial protein; Horizontal gene transfer; Rhodobacter sphaeroides; Microbiology; Chemistry; Biochemistry; Bacteria; Genetics; Enzyme; Mutant; Phylogenetics","score_opus":0.003068284414099443,"score_gpt":0.15695956576168194,"score_spread":0.15389128134758248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2796092606","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965675,0.0010252992,0.000020702082,0.0013257762,0.00007520924,0.00092734944,0.000024035986,0.000005104809,0.000029021028],"genre_scores_gemma":[0.99775904,0.001386117,0.00019037613,0.00022221995,0.00014890144,0.00012059869,0.000068626156,0.000014326017,0.00008976499],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898034,0.00010117789,0.00018801873,0.00043926912,0.000023311008,0.00026787014],"domain_scores_gemma":[0.9996774,0.000007191943,0.00003736243,0.00023559,0.0000030668436,0.000039396607],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029175103,0.00017504212,0.0001484116,0.000018579114,0.00024620263,0.000022433687,0.000093134244,0.0002477099,0.0000052811965],"category_scores_gemma":[0.0000048639936,0.00010453762,0.00002249976,0.000027757898,0.0018201083,0.000001840431,0.00017432407,0.00013698806,0.0000021743922],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004326366,0.000027317823,0.00026293503,0.0000055233886,0.000028413671,6.9858515e-7,0.0001165882,2.1187633e-7,0.9871575,0.00026384453,0.00001405474,0.0116902655],"study_design_scores_gemma":[0.0016922343,0.00027431743,0.008598067,0.0000050745375,0.000016743928,0.00012259344,0.00016878583,0.0000025553359,0.96164316,0.0006507691,0.026636906,0.00018880209],"about_ca_topic_score_codex":0.00001754646,"about_ca_topic_score_gemma":0.00007959898,"teacher_disagreement_score":0.02662285,"about_ca_system_score_codex":0.00001014188,"about_ca_system_score_gemma":0.0000071671293,"threshold_uncertainty_score":0.67062646},"labels":[],"label_agreement":null},{"id":"W2799486369","doi":"10.1371/journal.ppat.1006998","title":"PgaB orthologues contain a glycoside hydrolase domain that cleaves deacetylated poly-β(1,6)-N-acetylglucosamine and can disrupt bacterial biofilms","year":2018,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; U.S. Department of Health and Human Services; National Institutes of Health; National Eye Institute; Hospital for Sick Children; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Canada; University of Toronto","keywords":"Biochemistry; Escherichia coli; Biofilm; Periplasmic space; Microbiology; Glycoside hydrolase; Staphylococcus epidermidis; Operon; Hydrolase; Biology; Chemistry; Bacteria; Enzyme; Staphylococcus aureus","score_opus":0.011198860356910959,"score_gpt":0.21730913159885556,"score_spread":0.20611027124194461,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2799486369","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970114,0.0006431918,0.00006794877,0.0007286607,0.00035390267,0.0003861121,0.0005729867,0.000075226795,0.00016056627],"genre_scores_gemma":[0.99509525,0.000462574,0.0023732677,0.00041425374,0.0007645196,0.00003712108,0.00062902155,0.00006450036,0.00015947144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979766,0.00014299003,0.00033252218,0.00077903265,0.00014249349,0.0006263875],"domain_scores_gemma":[0.99889123,0.000015949425,0.00016447173,0.00061603833,0.000095386844,0.00021689953],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018360275,0.0003964835,0.0003875897,0.00009682862,0.00021617419,0.000080605765,0.00028322602,0.00062748883,0.00006687432],"category_scores_gemma":[0.00009035431,0.0003568582,0.000106713094,0.00014291798,0.000608003,0.000006184394,0.00039767553,0.00015930364,0.000022728009],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004507991,0.00011652435,0.0056746295,0.000014039103,0.00012301425,0.0000340927,0.00010581163,7.0390875e-8,0.9909586,0.000043340675,0.00016103238,0.0023180533],"study_design_scores_gemma":[0.001365469,0.0017150565,0.009818176,0.000022000753,0.00007228815,0.00013047046,0.00015391003,0.000020550757,0.9728681,0.00007712137,0.013271286,0.0004855863],"about_ca_topic_score_codex":0.00005292675,"about_ca_topic_score_gemma":0.00063253206,"teacher_disagreement_score":0.018090509,"about_ca_system_score_codex":0.000019620156,"about_ca_system_score_gemma":0.000072583076,"threshold_uncertainty_score":0.99988836},"labels":[],"label_agreement":null},{"id":"W2800056691","doi":"10.1101/320069","title":"The Evolution and Sequence Diversity of FhuA in <i>Salmonella</i> and <i>Escherichia</i>","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Escherichia coli; Operon; Microbiology; Phylogenetic tree; Genetics; Sequence analysis; Pathogenicity island; Salmonella; Enterobacteriaceae; Gene; Peptide sequence; Phylogenetics; Horizontal gene transfer; Colicin; Bacteria","score_opus":0.009635153116804619,"score_gpt":0.19990058048530565,"score_spread":0.19026542736850102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2800056691","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953916,0.003678688,0.000119641234,0.00013917926,0.0003142593,0.00025387807,0.0000795923,0.000017541422,0.000005603491],"genre_scores_gemma":[0.995202,0.0036827233,0.0008783993,0.000050122704,0.00014546803,0.0000146124885,3.6326722e-7,0.000023553963,0.0000027649585],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987204,0.00007903335,0.0002564022,0.00057342084,0.00010542769,0.00026530834],"domain_scores_gemma":[0.9989249,0.000013149058,0.00021929141,0.00060272845,0.00016600698,0.00007389536],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038940544,0.0002400088,0.00023847345,0.00005569994,0.00016100603,0.000042522697,0.0003331921,0.0006323898,8.651287e-7],"category_scores_gemma":[0.000082414095,0.00021450348,0.00004066579,0.00013445961,0.0005633169,0.0000036871509,0.0020290324,0.00026075396,9.3735287e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050657192,0.000023460707,0.030015104,0.0000634148,0.00003454638,0.000002249824,0.0000032953353,0.0000012696141,0.9696297,0.00012047276,0.000049800223,0.000006026004],"study_design_scores_gemma":[0.00037439747,0.00018430476,0.14867102,0.000080088284,0.00003945488,5.1979377e-8,0.0000058621636,0.000060687285,0.84678113,0.000020122041,0.0034300059,0.0003528742],"about_ca_topic_score_codex":0.00015613214,"about_ca_topic_score_gemma":0.000036828034,"teacher_disagreement_score":0.12284856,"about_ca_system_score_codex":0.00003647405,"about_ca_system_score_gemma":0.00015914414,"threshold_uncertainty_score":0.8747198},"labels":[],"label_agreement":null},{"id":"W2800520032","doi":"10.1007/978-1-4939-7847-2_1","title":"Nutrient Stress Small-Molecule Screening Platform for Escherichia coli","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Escherichia coli; Antibiotics; Bacteria; Biology; Nutrient; Drug development; Nutrient sensing; Drug discovery; Small molecule; Biochemistry; Drug; Computational biology; Microbiology; Genetics; Gene; Pharmacology; Signal transduction","score_opus":0.028713704651928462,"score_gpt":0.35083337967617495,"score_spread":0.3221196750242465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2800520032","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.389848,0.00039405713,0.6085567,0.00014630654,0.00035354617,0.00039721755,0.000037028785,0.000019950794,0.00024723294],"genre_scores_gemma":[0.12776072,0.000091237576,0.870558,0.0006504713,0.00037941485,0.00017536402,0.0002270887,0.00005842794,0.000099243414],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977704,0.00028809696,0.0004353527,0.00078430976,0.000055246466,0.0006665815],"domain_scores_gemma":[0.99892306,0.000046536763,0.00015523349,0.0006132309,0.00016250493,0.00009940783],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008005475,0.00031018388,0.00036640101,0.0001534259,0.000105171435,0.000025993253,0.00051791075,0.00082492287,0.00002029586],"category_scores_gemma":[0.00040846682,0.00030218152,0.00016384406,0.00025983207,0.0004145767,0.0000019711442,0.00039003114,0.00019206156,0.0000037534528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023985012,0.00007869422,0.00039068918,0.000015704021,0.00006895848,0.000003570892,0.000021751954,0.000005556004,0.98259014,0.0031939866,0.0000503698,0.013340728],"study_design_scores_gemma":[0.0010657051,0.0012071258,0.00014234276,0.000015243378,0.000022213628,0.000007587717,0.000049181173,0.00027736838,0.9522757,0.0023337048,0.04224435,0.00035950777],"about_ca_topic_score_codex":0.000032759446,"about_ca_topic_score_gemma":0.000083080515,"teacher_disagreement_score":0.26208726,"about_ca_system_score_codex":0.000020068761,"about_ca_system_score_gemma":0.00007488839,"threshold_uncertainty_score":0.999943},"labels":[],"label_agreement":null},{"id":"W2801351362","doi":"10.1098/rsob.180023","title":"Bacterial transmembrane signalling systems and their engineering for biosensing","year":2018,"lang":"en","type":"review","venue":"Open Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Élisabeth Bruyère Hospital","funders":"Deutsche Forschungsgemeinschaft","keywords":"Biology; Signalling; Transmembrane protein; Cell biology; Signal transduction; Receptor; Adaptation (eye); Neuroscience; Signalling pathways; Computational biology; Biochemistry","score_opus":0.036203025780041566,"score_gpt":0.29068754068328884,"score_spread":0.25448451490324725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2801351362","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013150857,0.9931971,0.0015554123,0.00002303766,0.0017001689,0.0016538567,0.00047950124,0.000019105597,0.000056763987],"genre_scores_gemma":[0.001136808,0.9937554,0.0015162269,0.000019405128,0.0016430093,0.00014261807,0.0016040036,0.000086777436,0.00009573354],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99815387,0.000102639744,0.0005114408,0.0007907789,0.000020380889,0.00042087917],"domain_scores_gemma":[0.9991855,0.000055187276,0.00023020488,0.00038489638,0.00006613878,0.00007808579],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000361347,0.00047640078,0.0012370109,0.00009043873,0.00009893367,0.00015091285,0.00059855846,0.0014334851,0.0000068371146],"category_scores_gemma":[0.000049623584,0.00035291034,0.00020867363,0.00007743154,0.00014639039,0.0000027056562,0.000421247,0.00014158824,0.000004442759],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000094225434,0.000029859768,3.8290312e-7,0.0038731783,0.00057715294,0.0000012523819,0.000012136626,0.0000010686746,0.5453721,0.00037093725,0.00029048734,0.4493772],"study_design_scores_gemma":[0.00033517202,0.0006023205,1.258069e-7,0.00086788315,0.00012530471,0.000089143934,0.000005680495,0.00003073197,0.008746136,0.000013402719,0.9887402,0.000443914],"about_ca_topic_score_codex":0.000017783594,"about_ca_topic_score_gemma":0.000010841359,"teacher_disagreement_score":0.9884497,"about_ca_system_score_codex":0.000013259406,"about_ca_system_score_gemma":0.00012679555,"threshold_uncertainty_score":0.9998923},"labels":[],"label_agreement":null},{"id":"W2802781915","doi":"10.22215/etd/2018-12721","title":"Augmenting the Detection of Verotoxin-Producing Escherichia coli Through use of Fluorescently-labeled DNA Oligonucleotides","year":2018,"lang":"en","type":"dissertation","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Health Canada","keywords":"Aptamer; VTEC; Escherichia coli; Oligonucleotide; DNA; Fluorophore; Fluorescence; Biology; Oligomer restriction; Chemistry; Molecular biology; Computational biology; Biochemistry; Gene","score_opus":0.01467053569320552,"score_gpt":0.24584025740362597,"score_spread":0.23116972171042044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2802781915","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99768955,0.00036965418,0.0001376008,0.000022647351,0.0007921714,0.00065076805,0.000021794278,0.00001586866,0.00029996087],"genre_scores_gemma":[0.99472827,0.0005207276,0.0025510693,0.000044305518,0.0002882857,0.000036917383,0.00034150184,0.0000496419,0.0014393056],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99854577,0.00006553471,0.0005263486,0.00046172517,0.0001512286,0.0002493831],"domain_scores_gemma":[0.9984214,0.0000129694145,0.0005808261,0.00065039383,0.0003102894,0.000024139637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017480971,0.00026711522,0.00032664713,0.000051330164,0.000101778896,0.000028045262,0.00031453924,0.00064260035,0.000033275952],"category_scores_gemma":[0.00015774762,0.00020485856,0.0001555054,0.00017571734,0.00016059526,0.0000050747635,0.00011852089,0.00016217698,0.0000031781192],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025866527,0.00005946299,0.000066141656,0.0001352367,0.00017086568,1.9884833e-7,0.00010472605,0.0000019232343,0.9957051,0.000036117177,0.00018320054,0.0032783193],"study_design_scores_gemma":[0.0002599224,0.00042874762,0.0018440442,0.000076832315,0.0001012435,0.0000012001882,0.0002009765,0.000019870768,0.98346615,0.000033699005,0.013362548,0.00020473805],"about_ca_topic_score_codex":0.00022993083,"about_ca_topic_score_gemma":0.0011753066,"teacher_disagreement_score":0.013179348,"about_ca_system_score_codex":0.000011294248,"about_ca_system_score_gemma":0.000079042664,"threshold_uncertainty_score":0.83538896},"labels":[],"label_agreement":null},{"id":"W2804620091","doi":"10.1073/pnas.1802501115","title":"VirB8 homolog TraE from plasmid pKM101 forms a hexameric ring structure and interacts with the VirB6 homolog TraD","year":2018,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research; National Institute of General Medical Sciences; Government of Canada","keywords":"Periplasmic space; Small-angle X-ray scattering; Size-exclusion chromatography; Multiangle light scattering; Cell envelope; Chemistry; Plasmid; Biophysics; Membrane; Secretion; Crystallography; Light scattering; Scattering; Biology; Biochemistry; DNA; Physics; Escherichia coli; Gene","score_opus":0.01228955209278477,"score_gpt":0.24833617368994546,"score_spread":0.2360466215971607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2804620091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99678934,0.00016454603,0.0000025383513,0.002383683,0.00002349514,0.000114482755,0.00003658959,0.0000041477074,0.00048118338],"genre_scores_gemma":[0.9984091,0.00006864069,0.0009676405,0.00038009405,0.00014020636,0.0000040940968,7.735041e-7,0.0000045099155,0.000024972996],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991831,0.0000055415853,0.00015494818,0.0002642711,0.00024938537,0.00014272021],"domain_scores_gemma":[0.9995884,0.000023097655,0.0002384112,0.000016543216,0.00011086181,0.00002271364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023091964,0.00010415485,0.00011560392,0.000048261696,0.0001744863,0.000025703579,0.00059563626,0.00016440517,0.0000068256586],"category_scores_gemma":[0.000072684044,0.00005156081,0.00003186862,0.00022928286,0.002005425,0.000016264665,0.00015658978,0.00013665234,2.4729408e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052311727,0.000011523675,0.0013119772,0.0000063239295,0.00002589776,6.416555e-9,0.00011101106,0.0000026865976,0.9965552,0.0007171142,0.00011468966,0.0010912283],"study_design_scores_gemma":[0.00019001604,0.0003888587,0.048529085,0.000021499503,0.000013166864,0.000028432936,0.00015230151,0.000095421674,0.9442826,0.0054232883,0.0007950044,0.00008034181],"about_ca_topic_score_codex":0.000009985245,"about_ca_topic_score_gemma":0.0000024121987,"teacher_disagreement_score":0.052272648,"about_ca_system_score_codex":0.00000577645,"about_ca_system_score_gemma":0.00002168509,"threshold_uncertainty_score":0.7389072},"labels":[],"label_agreement":null},{"id":"W2806087678","doi":"10.1016/j.sbi.2018.05.002","title":"Enzyme structures of the bacterial peptidoglycan and wall teichoic acid biogenesis pathways","year":2018,"lang":"en","type":"review","venue":"Current Opinion in Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Peptidoglycan; Lipid II; Teichoic acid; Bacterial cell structure; Cell wall; Bacterial outer membrane; Biogenesis; Cell envelope; Flippase; Biochemistry; Biology; Enzyme; Cell biology; Cytoplasm; Bacteria; Membrane; Escherichia coli; Phospholipid","score_opus":0.045847752617186405,"score_gpt":0.32789799144437837,"score_spread":0.28205023882719193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806087678","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.081464484,0.9086558,0.000002817533,0.000022892333,0.008475321,0.0005951977,0.00076574826,0.000010274781,0.000007452081],"genre_scores_gemma":[0.017042078,0.97970206,0.00015720719,0.000009186854,0.0016546706,0.000040796655,0.001349177,0.000038653907,0.000006181937],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973787,0.00047406688,0.000816309,0.0008170847,0.00008414122,0.00042967717],"domain_scores_gemma":[0.99849385,0.000032216187,0.00061585044,0.0007099292,0.00007649218,0.00007168221],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00017870431,0.0005590821,0.0010375475,0.00016492572,0.00008273865,0.000017225082,0.0008076902,0.0014524432,0.000041338542],"category_scores_gemma":[0.00013225911,0.00034502993,0.00034484747,0.00025214814,0.00080489885,0.0000028689017,0.000831477,0.00038078756,0.0000023147313],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000921851,0.000024814128,0.00050506927,0.0044980613,0.00019071733,1.9131004e-7,0.000042674576,1.5708271e-7,0.08796284,0.0010681045,0.00055691047,0.90505826],"study_design_scores_gemma":[0.00039684118,0.00037145586,0.0006660694,0.0008927242,0.000077925295,0.000059276234,0.000006287757,0.0000010866586,0.009200695,0.0006400255,0.9872161,0.0004714985],"about_ca_topic_score_codex":0.000022937898,"about_ca_topic_score_gemma":0.000027595299,"teacher_disagreement_score":0.9866592,"about_ca_system_score_codex":0.00003454794,"about_ca_system_score_gemma":0.00023529267,"threshold_uncertainty_score":0.99990016},"labels":[],"label_agreement":null},{"id":"W2806177767","doi":"10.1016/j.jsb.2018.06.002","title":"Structural and biochemical characterization of SpoIIIAF, a component of a sporulation-essential channel in Bacillus subtilis","year":2018,"lang":"en","type":"article","venue":"Journal of Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Bacillus subtilis; Flagellum; Biology; Cell biology; Secretion; Biochemistry; Genetics; Bacteria","score_opus":0.0070627180468078934,"score_gpt":0.23519911603605556,"score_spread":0.22813639798924767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806177767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99899477,0.00023783807,0.00006848864,0.00013978122,0.00040770022,0.0000864854,0.000057982732,0.0000015085595,0.0000054225843],"genre_scores_gemma":[0.9989808,0.00013451207,0.00041002777,0.000021689333,0.00034932574,4.987246e-7,0.0000927275,0.000007319052,0.000003092706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895984,0.00005018787,0.0005903476,0.00016921361,0.00006841913,0.00016201235],"domain_scores_gemma":[0.99900997,0.000008164092,0.0005637685,0.00012621652,0.00024664687,0.000045223507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011934334,0.0001311613,0.0003387294,0.0001469961,0.00002157474,0.000004528716,0.00016140261,0.00031591425,0.000022897586],"category_scores_gemma":[0.000048140224,0.000102267935,0.00007061735,0.00010918507,0.00048428652,0.00000637585,0.0001088493,0.00010426291,1.4825471e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004913172,0.000010792376,0.011139439,0.000018560944,0.00003928608,0.0000011855984,0.00006391117,0.0000018316287,0.9866237,0.000092823895,0.0000032202333,0.00151395],"study_design_scores_gemma":[0.00074191444,0.00091444515,0.21454273,0.000018388875,0.000015011799,0.00012841057,0.000022935279,0.00013412334,0.7829388,0.0003465284,0.0001043922,0.00009233804],"about_ca_topic_score_codex":0.000024614821,"about_ca_topic_score_gemma":0.00001406175,"teacher_disagreement_score":0.2036849,"about_ca_system_score_codex":0.000009204431,"about_ca_system_score_gemma":0.000044148754,"threshold_uncertainty_score":0.41703653},"labels":[],"label_agreement":null},{"id":"W2806213267","doi":"10.1007/978-1-4939-7871-7_6","title":"A Bacterial Adenylate Cyclase-Based Two-Hybrid System Compatible with Gateway® Cloning","year":2018,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Institut national de la recherche scientifique; National Institute of General Medical Sciences; University of South Dakota; University of Nebraska Medical Center","keywords":"Adenylate kinase; Cyclase; Operon; Adenylate Cyclase Toxin; lac operon; Gene; Bordetella pertussis; Cloning (programming); Biology; Biochemistry; Cell biology; Gateway (web page); Chemistry; G protein; Escherichia coli; Genetics; Pertussis toxin; Bacteria; Enzyme; Signal transduction; Computer science","score_opus":0.012566491211831657,"score_gpt":0.3247195395860345,"score_spread":0.3121530483742028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806213267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5967682,0.00017227404,0.40163603,0.000101033445,0.0004905198,0.00026663925,0.000026444972,0.000044737415,0.0004941253],"genre_scores_gemma":[0.6119185,0.000008408274,0.38729304,0.0002253179,0.0002825552,0.00004558694,0.000161816,0.00004304873,0.000021739259],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997013,0.00095976103,0.00045042508,0.00084590033,0.00008365616,0.0006472749],"domain_scores_gemma":[0.9987777,0.000034448756,0.0001976721,0.00074305397,0.00013965051,0.000107462845],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00080023345,0.0003696479,0.00047602563,0.00020165986,0.00010339973,0.000038463604,0.00045915114,0.0004440138,0.00004252794],"category_scores_gemma":[0.000098368895,0.00031684048,0.00010450308,0.00027778622,0.00056450756,0.0000025156592,0.00023220225,0.00023527614,0.0000141362625],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000507428,0.000051346567,0.0009514813,0.000024254137,0.00006478938,0.000038153543,0.000010200976,0.000072049916,0.9938673,0.0006704741,0.000024321422,0.003718236],"study_design_scores_gemma":[0.0019726707,0.0018483412,0.0001691282,0.000046993224,0.000031849333,0.0001009149,0.000022188484,0.0009223081,0.9798833,0.00015735318,0.014426749,0.0004181829],"about_ca_topic_score_codex":0.00009336752,"about_ca_topic_score_gemma":0.00010256881,"teacher_disagreement_score":0.015150276,"about_ca_system_score_codex":0.000042499818,"about_ca_system_score_gemma":0.00015427054,"threshold_uncertainty_score":0.99992836},"labels":[],"label_agreement":null},{"id":"W2807023932","doi":"10.1186/s12864-018-4655-4","title":"Identification of two different chemosensory pathways in representatives of the genus Halomonas","year":2018,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Dalhousie University; Consejo Nacional de Investigaciones Científicas y Técnicas","keywords":"Biology; Halomonas; Genome; Gene cluster; Gene; Genetics; Locus (genetics); Mobile genetic elements; Microbiology; 16S ribosomal RNA","score_opus":0.020625870403850475,"score_gpt":0.2568192044024057,"score_spread":0.23619333399855522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2807023932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990502,0.00014934271,0.00026278873,0.000037286278,0.00018619404,0.000153222,0.000030586805,0.0000022812253,0.00012808868],"genre_scores_gemma":[0.99929243,0.00008306567,0.00039453484,0.000017211167,0.000100240904,0.0000052578603,0.000011954309,0.000009438468,0.00008583374],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993062,0.000048892518,0.000290258,0.00019569987,0.000052986667,0.00010596244],"domain_scores_gemma":[0.9992688,0.0000066019106,0.0001967825,0.00044935878,0.00006432767,0.000014144122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009881058,0.0000791992,0.0001160558,0.000028339338,0.0000216324,0.0000042334364,0.00024130312,0.000113068556,0.0000039995093],"category_scores_gemma":[0.000047324356,0.00006111025,0.00006186526,0.00006563183,0.0002575898,8.76089e-7,0.00018422437,0.000042361076,0.0000014929278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044990866,0.000050032075,0.008384751,0.000012257794,0.0000106926245,7.428889e-8,0.00012119154,0.000012859115,0.99003714,0.00023654764,0.000018472107,0.0010710165],"study_design_scores_gemma":[0.0003024702,0.00007891376,0.048999537,0.000004479151,0.0000070108367,0.000001405565,0.00009032528,0.00006988769,0.9494138,0.00066350313,0.00030761276,0.000061105966],"about_ca_topic_score_codex":0.000022708307,"about_ca_topic_score_gemma":0.0002579485,"teacher_disagreement_score":0.040623367,"about_ca_system_score_codex":0.000010079683,"about_ca_system_score_gemma":0.00004488743,"threshold_uncertainty_score":0.24920036},"labels":[],"label_agreement":null},{"id":"W2807255721","doi":"10.3389/fmicb.2018.01356","title":"Functional Characterization of Enzymatic Steps Involved in Pyruvylation of Bacterial Secondary Cell Wall Polymer Fragments","year":2018,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Austrian Science Fund","keywords":"Chemistry; Cell wall; Biochemistry; Transferase; Bacterial cell structure; Enzyme; Recombinant DNA; Bacteria; Biology; Gene; Genetics","score_opus":0.004834403175761055,"score_gpt":0.18358637810433362,"score_spread":0.17875197492857256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2807255721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969115,0.00023987667,0.0011968673,0.000046824745,0.0012526514,0.00019290452,0.000101866666,0.000003680624,0.000053781765],"genre_scores_gemma":[0.99683076,0.00011145664,0.0011166108,0.00007763235,0.0001313067,0.000008743391,0.0015950637,0.000013800242,0.000114640316],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989121,0.00010083556,0.00046834955,0.00028546405,0.000029130459,0.00020410705],"domain_scores_gemma":[0.9994497,0.000004372683,0.0002453098,0.0002119092,0.00006892409,0.00001982368],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014926514,0.0001355366,0.00027273266,0.00020035647,0.00001611347,0.000003287244,0.00015713341,0.00047260837,0.0001192792],"category_scores_gemma":[0.000014010336,0.00013945489,0.000046787656,0.0001401535,0.00026005952,0.0000052790256,0.00009379416,0.000094493735,0.0000029538353],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003765184,0.000110158675,0.01658794,0.000033379743,0.000023484194,3.258882e-7,0.00006325275,0.0000011990895,0.9813622,0.000009695708,0.0004703872,0.000961455],"study_design_scores_gemma":[0.0011986662,0.00042276486,0.024459139,0.000017538736,0.000007642376,0.000001999352,0.000040160758,0.000029947078,0.9709773,0.00004708789,0.0026745105,0.00012326184],"about_ca_topic_score_codex":0.000020061427,"about_ca_topic_score_gemma":0.00007398476,"teacher_disagreement_score":0.010384922,"about_ca_system_score_codex":0.000021617072,"about_ca_system_score_gemma":0.00008591378,"threshold_uncertainty_score":0.5686805},"labels":[],"label_agreement":null},{"id":"W2807655717","doi":"10.1016/j.str.2018.04.018","title":"Biophysical Characterization of the Tandem FHA Domain Regulatory Module from the Mycobacterium tuberculosis ABC Transporter Rv1747","year":2018,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Genome British Columbia; University of British Columbia","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Michael Smith Health Research BC; Canada Foundation for Innovation","keywords":"ATP-binding cassette transporter; Linker; Chemistry; Nuclear magnetic resonance spectroscopy; Biophysics; Transporter; Biochemistry; Stereochemistry; Biology; Gene","score_opus":0.0031187871123521576,"score_gpt":0.1859763882968086,"score_spread":0.18285760118445643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2807655717","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974431,0.000037331494,0.00011390058,0.0010244977,0.0006626937,0.00017470447,0.0004958734,0.00000970532,0.000038192105],"genre_scores_gemma":[0.99776924,0.00003613772,0.00015720283,0.00042196942,0.0012245508,0.0000041175076,0.00031936166,0.000019594218,0.00004782926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915236,0.00005710815,0.00019759081,0.00029675302,0.00011896469,0.00017722798],"domain_scores_gemma":[0.9991219,0.0000037419131,0.00012097334,0.0006466518,0.00007677397,0.000029955178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000043549528,0.0001618046,0.00014806096,0.00001171175,0.00011893177,0.000016722055,0.0003686772,0.00037027252,0.000092723254],"category_scores_gemma":[0.0000075392886,0.000091834896,0.00011135748,0.000112095586,0.00043042528,0.0000031676748,0.00009985711,0.000121951045,0.0000019979946],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004283418,0.000011805391,0.0031345817,0.0000039269194,0.00005480412,1.72771e-7,0.000080991886,3.3662508e-7,0.99549484,0.00011301407,0.00017402561,0.0008886662],"study_design_scores_gemma":[0.00015804506,0.00007214152,0.32931456,0.0000074106024,0.000024043016,0.0000023400337,0.000011258555,0.000005036286,0.6573794,0.00047415798,0.012464383,0.00008722456],"about_ca_topic_score_codex":0.000017916636,"about_ca_topic_score_gemma":0.000065719054,"teacher_disagreement_score":0.33811545,"about_ca_system_score_codex":0.0000073042074,"about_ca_system_score_gemma":0.000035780668,"threshold_uncertainty_score":0.37449184},"labels":[],"label_agreement":null},{"id":"W2809128197","doi":"10.1073/pnas.1804218115","title":"Timing of DNA damage responses impacts persistence to fluoroquinolones","year":2018,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Army Research Office; Institute of Genetics; Keio University; Princeton University; U.S. Army; Charles H. Revson Foundation","keywords":"Persistence (discontinuity); Antibiotics; DNA damage; Multidrug tolerance; Bacteria; Biology; DNA repair; SOS response; DNA; Phenotype; Microbiology; Genetics; Biofilm; Gene","score_opus":0.05171719727473181,"score_gpt":0.3122985845828926,"score_spread":0.26058138730816083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2809128197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99681187,0.00006735455,7.302281e-7,0.0018852539,0.000021741313,0.00008178011,0.000014973082,0.0000025476306,0.0011137545],"genre_scores_gemma":[0.99723625,0.000034053213,0.0023656997,0.00017913913,0.000090470785,0.000001914356,1.343661e-7,0.0000026129512,0.00008973521],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992153,0.000004893834,0.00018865334,0.00018420308,0.00028725402,0.00011967127],"domain_scores_gemma":[0.99943227,0.000013590377,0.00021210547,0.000013413143,0.00030335528,0.000025290408],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050826045,0.000063382024,0.00009503096,0.00009524851,0.00008384835,0.000007682205,0.00062690466,0.00011679474,0.0000055082073],"category_scores_gemma":[0.00051284314,0.000044009736,0.000047045287,0.00032528408,0.0010423166,0.000008530338,0.00020779815,0.000042385993,7.07204e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000561071,0.000014517276,0.0011929213,0.000015518573,0.000008256441,1.2730609e-9,0.00007292985,0.0000012926562,0.9973267,0.0007318973,0.00033302643,0.00024684513],"study_design_scores_gemma":[0.000061378356,0.00036070298,0.049233213,0.000036812664,0.0000050817157,0.000003928027,0.00009603152,0.000021312577,0.9487026,0.00073008705,0.00069897226,0.00004988725],"about_ca_topic_score_codex":0.000002425068,"about_ca_topic_score_gemma":2.571833e-7,"teacher_disagreement_score":0.048624095,"about_ca_system_score_codex":0.000005343801,"about_ca_system_score_gemma":0.00003157512,"threshold_uncertainty_score":0.38404587},"labels":[],"label_agreement":null},{"id":"W2810601223","doi":"10.1101/359208","title":"An activation pathway governs cell wall polymerization by a bacterial morphogenic machine","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"MreB; Cytoskeleton; Actin; Cell biology; ATP synthase; Cell division; Microtubule; Glycobiology; Biology; Cell; Chemistry; Biophysics; Enzyme; Biochemistry; Glycoprotein; Glycan","score_opus":0.0051787828748105875,"score_gpt":0.19069381609559916,"score_spread":0.18551503322078858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2810601223","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933776,0.00047823045,0.0027219579,0.00013597777,0.00116611,0.00053004915,0.001445871,0.00013603414,0.00000814817],"genre_scores_gemma":[0.9958547,0.00051027053,0.0016484157,0.00025193274,0.001359023,0.00008914828,0.00010419617,0.0001655259,0.000016808106],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973502,0.00015039937,0.00047642665,0.001264217,0.00023580389,0.0005229494],"domain_scores_gemma":[0.9974824,0.00000551707,0.00051703386,0.0014971768,0.0002752108,0.00022265576],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00023149131,0.0005983162,0.00039304752,0.00011011674,0.00014143423,0.0001878659,0.0007200516,0.0016354454,0.00009825831],"category_scores_gemma":[0.00005200675,0.0006528586,0.00014106289,0.00018791427,0.00015161547,0.0000136403,0.0005127672,0.00037290461,0.000027838993],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014708193,0.0002369435,0.00047871165,0.0000662507,0.00008019079,0.000002206388,0.000002194378,0.0000045369875,0.9983684,0.000014694859,0.0005901168,0.000008683572],"study_design_scores_gemma":[0.0005886104,0.0004722132,0.0031030104,0.000036069236,0.00005029192,2.4155929e-8,6.718852e-7,0.00015302029,0.95927435,8.15515e-7,0.035597526,0.00072337827],"about_ca_topic_score_codex":0.00010705519,"about_ca_topic_score_gemma":0.0000071294253,"teacher_disagreement_score":0.03909402,"about_ca_system_score_codex":0.00009094617,"about_ca_system_score_gemma":0.00041307445,"threshold_uncertainty_score":0.9996607},"labels":[],"label_agreement":null},{"id":"W2834968164","doi":"10.1016/j.bbrc.2018.06.166","title":"The interaction of TraW and TrbC is required to facilitate conjugation in F-like plasmids","year":2018,"lang":"en","type":"article","venue":"Biochemical and Biophysical Research Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Canada Foundation for Innovation; York University","keywords":"Plasmid; Chemistry; Bacterial conjugation; Pilus; Secretion; Cell biology; DNA; Escherichia coli; Gene; Biology; Biochemistry","score_opus":0.09464928663988163,"score_gpt":0.37036547054073127,"score_spread":0.2757161839008496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2834968164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99309134,0.00029643055,0.000019078521,0.0061057927,0.000025095922,0.00018628559,0.000027977932,0.000003879746,0.00024411133],"genre_scores_gemma":[0.9976513,0.001612361,0.00042768958,0.00008055404,0.000051833315,0.000032561176,0.000028192553,0.0000050373724,0.000110467656],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991796,0.00011160064,0.00018600485,0.00021974143,0.00011334221,0.00018968908],"domain_scores_gemma":[0.99903744,0.00011379357,0.00002925013,0.0005492078,0.00019407884,0.00007621696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030811428,0.00007293795,0.000092575145,0.000051973144,0.00017253477,0.00002933128,0.0003461577,0.00013351622,0.0000022196684],"category_scores_gemma":[0.0002246616,0.000053788524,0.000024008963,0.00022887305,0.0013978232,0.0000038643993,0.00051485933,0.00016344861,0.000005529311],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018693598,0.00006335464,0.000069406284,0.000006488857,0.000009450542,4.0495124e-8,0.000100826,1.8803547e-8,0.98885953,0.00071409147,0.00077246,0.00921742],"study_design_scores_gemma":[0.00022397586,0.00078171823,0.0018858718,0.000020563604,0.000003150394,0.0000014656332,0.00020150778,0.00018969229,0.93469006,0.0008190098,0.061105765,0.000077234945],"about_ca_topic_score_codex":0.00008766801,"about_ca_topic_score_gemma":0.00009552174,"teacher_disagreement_score":0.060333304,"about_ca_system_score_codex":0.000010720053,"about_ca_system_score_gemma":0.000031827538,"threshold_uncertainty_score":0.5150338},"labels":[],"label_agreement":null},{"id":"W2843647573","doi":"10.1128/jb.00245-18","title":"The Chaperone Activities of DsbG and Spy Restore Peptidoglycan Biosynthesis in the <i>elyC</i> Mutant by Preventing Envelope Protein Aggregation","year":2018,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Kempestiftelserna; Natural Sciences and Engineering Research Council of Canada; Knut och Alice Wallenbergs Stiftelse; Government of Canada","keywords":"Periplasmic space; Chaperone (clinical); Biology; Peptidoglycan; Mutant; Cell envelope; Protein folding; Biochemistry; Biosynthesis; Cell biology; Escherichia coli; Overproduction; Protein biosynthesis; Enzyme; Gene","score_opus":0.00726161625544955,"score_gpt":0.21887538685655902,"score_spread":0.21161377060110947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2843647573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973655,0.0006642673,0.000026389915,0.0015952033,0.00014376586,0.00015183675,0.00000960292,0.0000014662893,0.000042016523],"genre_scores_gemma":[0.99829197,0.00096435734,0.0003237232,0.000082557104,0.00027228575,0.000006189902,0.0000041141852,0.000009471666,0.000045338795],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896663,0.00022207065,0.00040057884,0.0001412819,0.000079344325,0.00019010708],"domain_scores_gemma":[0.999166,0.00004628722,0.0004929526,0.00019602061,0.000074063064,0.000024636456],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069386547,0.00011453097,0.00020233683,0.000051157796,0.000098224744,0.000022223043,0.000293844,0.00020752006,0.000005603131],"category_scores_gemma":[0.00017272204,0.0000661699,0.000052154246,0.00007451494,0.0005340209,0.0000066605376,0.00009580727,0.00015198349,3.55356e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002537421,0.00003218187,0.00091627624,0.000008403968,0.000034042012,0.0000017254421,0.00015321732,1.0261911e-7,0.98184687,0.000042166008,0.000110282854,0.016601017],"study_design_scores_gemma":[0.00033243495,0.0015462762,0.008259671,0.00004591901,0.000014545189,0.00015669766,0.00038020953,0.0000031492586,0.958527,0.00012329726,0.030524528,0.00008621592],"about_ca_topic_score_codex":0.00001589317,"about_ca_topic_score_gemma":0.00010462305,"teacher_disagreement_score":0.030414246,"about_ca_system_score_codex":0.000010030182,"about_ca_system_score_gemma":0.00006398232,"threshold_uncertainty_score":0.26983303},"labels":[],"label_agreement":null},{"id":"W2884266059","doi":"10.1111/mmi.14085","title":"<i>Escherichia coli</i> and <i>Pseudomonas aeruginosa</i> lipopolysaccharide O‐antigen ligases share similar membrane topology and biochemical properties","year":2018,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Pseudomonas aeruginosa; Escherichia coli; Lipopolysaccharide; Microbiology; Bacterial outer membrane; Antigen; Bacteria; Biochemistry; Gene; Genetics; Immunology","score_opus":0.0072118630852954,"score_gpt":0.20421197183952994,"score_spread":0.19700010875423454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884266059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99085176,0.0064906394,0.00016758511,0.0015563534,0.00027807045,0.00034245185,0.000107035725,0.00004947961,0.00015660144],"genre_scores_gemma":[0.99254715,0.0014626504,0.0017773961,0.0035370046,0.00029450047,0.00003174269,0.0001893201,0.00005125072,0.00010898413],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99793845,0.00012753533,0.00034891494,0.0009279593,0.000048918395,0.0006082137],"domain_scores_gemma":[0.99909234,0.0000113634405,0.00011617854,0.0004950118,0.00013586503,0.00014924575],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00014212639,0.0004054214,0.0004211615,0.000085819964,0.0001721126,0.000045706645,0.000328974,0.00084289594,0.00003973855],"category_scores_gemma":[0.00009310355,0.00036517862,0.00008559207,0.0000975727,0.0015752137,0.000005128873,0.0006869103,0.0002071231,0.00001676234],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001851825,0.00005272796,0.0003511672,0.00003119705,0.0001161303,0.000018063387,0.00003734097,2.8304646e-7,0.9974781,0.00019510201,0.0010607588,0.0004739049],"study_design_scores_gemma":[0.00062913797,0.0008272415,0.000095077616,0.000019657804,0.00004288014,0.00036226274,0.000039632254,0.000007040513,0.9231647,0.000065199165,0.07433119,0.0004159789],"about_ca_topic_score_codex":0.000050908802,"about_ca_topic_score_gemma":0.000043620978,"teacher_disagreement_score":0.07431344,"about_ca_system_score_codex":0.000009972391,"about_ca_system_score_gemma":0.000070784794,"threshold_uncertainty_score":0.99988},"labels":[],"label_agreement":null},{"id":"W2884785731","doi":"10.1038/s41467-018-05255-9","title":"How nanoscale protein interactions determine the mesoscale dynamic organisation of bacterial outer membrane proteins","year":2018,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Los Alamos National Laboratory; National Nuclear Security Administration; University of Oxford; Centre National de la Recherche Scientifique; Engineering and Physical Sciences Research Council; Canadian Institutes of Health Research; Leverhulme Trust; Wellcome Trust; Deutsche Forschungsgemeinschaft; Partnership for Advanced Computing in Europe AISBL; U.S. Department of Energy","keywords":"Mesoscale meteorology; Bacterial outer membrane; Cell envelope; Envelope (radar); Cluster (spacecraft); Membrane; Cluster analysis; Molecular dynamics; Diffusion; Biophysics; Physics; Chemistry; Chemical physics; Biological system; Biology; Escherichia coli; Computer science; Biochemistry; Computational chemistry; Artificial intelligence","score_opus":0.009345082545404554,"score_gpt":0.2576868505515256,"score_spread":0.24834176800612107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884785731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98418003,0.00042750404,0.0006732031,0.012969589,0.00039868485,0.00075325026,0.00009505445,0.000027151009,0.00047553476],"genre_scores_gemma":[0.99268335,0.00013400645,0.005536576,0.0001213653,0.00022658355,0.00009389381,0.00032489334,0.000020783946,0.00085854676],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923354,0.0001205057,0.0002013971,0.00020767303,0.00008677997,0.00015010384],"domain_scores_gemma":[0.9979096,0.000017373675,0.000172891,0.0016365197,0.00023287407,0.00003073369],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000120399585,0.00013201557,0.00012421608,0.000048351078,0.00023306865,0.00004634248,0.00092233426,0.0003924375,0.000036266247],"category_scores_gemma":[0.00013537846,0.00009852495,0.0000710977,0.0001438158,0.0004858611,0.000008155646,0.0004849115,0.00033388307,0.000006369578],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039047834,0.0000803415,0.0000390785,0.0000053874837,0.00003409243,7.594091e-8,0.00005869924,7.094066e-8,0.9964585,0.00031905595,0.0002957749,0.0026698895],"study_design_scores_gemma":[0.00020512493,0.0002046973,0.0007031312,0.000011276881,0.000020862899,0.000011825184,0.000046977948,0.000055790046,0.7984472,0.00008634403,0.20010659,0.00010017294],"about_ca_topic_score_codex":0.000009320038,"about_ca_topic_score_gemma":0.0015757814,"teacher_disagreement_score":0.19981082,"about_ca_system_score_codex":0.000016129827,"about_ca_system_score_gemma":0.00006102813,"threshold_uncertainty_score":0.4017731},"labels":[],"label_agreement":null},{"id":"W2885488593","doi":"10.1038/s41396-018-0254-2","title":"Extrachromosomal circular elements targeted by CRISPR-Cas in <i>Dehalococcoides mccartyi</i> are linked to mobilization of reductive dehalogenase genes","year":2018,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Strategic Environmental Research and Development Program; Ontario Genomics Institute; Government of Ontario; Canadian Institutes of Health Research; Ontario Genomics; Genome Canada; Government of Canada; U.S. Department of Defense","keywords":"Biology; Genome; Extrachromosomal DNA; Prophage; CRISPR; Dehalogenase; Genetics; Genomic island; Metagenomics; Horizontal gene transfer; Gene; Bacteriophage; Escherichia coli","score_opus":0.009534215766656716,"score_gpt":0.2539120589980622,"score_spread":0.24437784323140546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2885488593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99566185,0.0013174771,0.001748867,0.00061244896,0.0003129345,0.00026554533,0.000049450882,0.0000061469027,0.000025286621],"genre_scores_gemma":[0.9978417,0.0004065733,0.00085299433,0.00023104444,0.00054855715,0.000013346988,0.00003621315,0.000022776901,0.000046795703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987292,0.00013461422,0.0004306165,0.0002587142,0.000150164,0.00029667534],"domain_scores_gemma":[0.99906975,0.0000070809183,0.00027157567,0.00031431607,0.00025361724,0.000083670115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035398937,0.00016570935,0.00019409972,0.00007938044,0.00012686082,0.000028339491,0.0003570546,0.0002261814,0.000041243115],"category_scores_gemma":[0.00008876399,0.00012680521,0.000075230484,0.00020114548,0.00019015408,0.000005833194,0.00012858477,0.0001648665,0.000006250703],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010284822,0.000105458275,0.0026449265,0.0000060567895,0.000054141226,0.000003946156,0.00012518713,0.000040082494,0.9931731,0.000006605153,0.0014320166,0.002305632],"study_design_scores_gemma":[0.0005181372,0.0006742916,0.008123147,0.000022743734,0.000026538042,0.00008347661,0.00029715692,0.000039833543,0.9816553,0.00018270245,0.008219041,0.00015761933],"about_ca_topic_score_codex":0.000020087042,"about_ca_topic_score_gemma":0.000058703743,"teacher_disagreement_score":0.011517787,"about_ca_system_score_codex":0.000031662723,"about_ca_system_score_gemma":0.00007230047,"threshold_uncertainty_score":0.51709664},"labels":[],"label_agreement":null},{"id":"W2887389152","doi":"10.1002/pro.3447","title":"Characterization of the two conformations adopted by the T3SS inner‐membrane protein PrgK","year":2018,"lang":"en","type":"article","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Michael Smith Health Research BC; Howard Hughes Medical Institute","keywords":"Periplasmic space; Effector; Context (archaeology); Secretion; Biophysics; Chemistry; Linker; Crystallography; Inner membrane; Salmonella enterica; Membrane; Protein structure; Biochemistry; Biology; Escherichia coli","score_opus":0.006980075129223401,"score_gpt":0.230026853459627,"score_spread":0.2230467783304036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2887389152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966053,0.000017831693,0.00061644206,0.0013265304,0.000121874764,0.00083781744,0.000027674663,0.000009538733,0.00043698717],"genre_scores_gemma":[0.9990171,0.0000059869194,0.00026580988,0.00016826268,0.00009158805,0.0000738428,0.000018013528,0.0000057378297,0.00035362138],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915373,0.00004021484,0.00019631209,0.00021226156,0.00019212702,0.00020534049],"domain_scores_gemma":[0.99903715,0.0000018286808,0.00017836448,0.00049673737,0.00025556056,0.00003035376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037926764,0.00009015025,0.000070489376,0.000028935112,0.00030829594,0.000046119978,0.00075636664,0.000085511776,0.000014952603],"category_scores_gemma":[0.00013682683,0.00005171212,0.000028984115,0.00047373967,0.0015292582,0.000010426008,0.00028958538,0.000075434946,0.0000069602393],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016015361,0.000017771816,0.000056054803,0.0000051311977,0.0000030767078,1.7641241e-8,0.00003721734,3.2579823e-7,0.9970674,0.00055891194,0.00001771801,0.0022203838],"study_design_scores_gemma":[0.00015985072,0.00017728373,0.0011032445,0.0000146660705,0.000002969553,0.0000034109203,0.000013015356,0.00010448545,0.982143,0.000054230502,0.01614834,0.000075537806],"about_ca_topic_score_codex":0.000021871781,"about_ca_topic_score_gemma":0.000024446223,"teacher_disagreement_score":0.016130622,"about_ca_system_score_codex":0.000008000005,"about_ca_system_score_gemma":0.00016571725,"threshold_uncertainty_score":0.56346154},"labels":[],"label_agreement":null},{"id":"W2888069421","doi":"10.1038/s41598-018-30979-5","title":"Outer membrane lipoprotein RlpA is a novel periplasmic interaction partner of the cell division protein FtsK in Escherichia coli","year":2018,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; University of Guelph","keywords":"Periplasmic space; Cell biology; Cell division; Biology; Escherichia coli; Cell; Biochemistry; Gene","score_opus":0.010111441247311094,"score_gpt":0.23622235564952676,"score_spread":0.22611091440221567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2888069421","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960268,0.00004050177,0.00012308032,0.00024276049,0.0025586016,0.00053165766,0.0000058615838,0.000007130502,0.00046361046],"genre_scores_gemma":[0.9955949,0.0000038981,0.000635177,0.00005928384,0.00011215365,0.000034657623,0.000021963853,0.000015464964,0.003522475],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984733,0.000040541356,0.00042213692,0.00062050286,0.00020379573,0.00023974452],"domain_scores_gemma":[0.9985875,0.0000019070741,0.0003185165,0.00090024865,0.00015101807,0.00004080157],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049603207,0.00014414052,0.00014588288,0.000072218165,0.00011434454,0.000064605716,0.00022378264,0.00023759906,0.000062936124],"category_scores_gemma":[0.00006854978,0.0001049587,0.00009243905,0.00028680035,0.00039673585,0.0000054285942,0.00030968484,0.0001186234,0.000007572288],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036173773,0.00011726415,0.00054161315,0.000017772902,0.0000073245315,0.0000025820611,0.000095031806,0.00000499805,0.99783814,0.0000042066804,0.0007435549,0.00059133064],"study_design_scores_gemma":[0.00018892676,0.0001605655,0.0015110751,0.00003898884,0.000005560858,0.00001616186,0.000030190442,0.00007795303,0.91914415,0.00008517919,0.078620516,0.000120727724],"about_ca_topic_score_codex":0.00008503132,"about_ca_topic_score_gemma":0.00023073099,"teacher_disagreement_score":0.07869399,"about_ca_system_score_codex":0.000015165729,"about_ca_system_score_gemma":0.00011413478,"threshold_uncertainty_score":0.42800915},"labels":[],"label_agreement":null},{"id":"W2889986000","doi":"10.3390/ijms19092680","title":"Structural Basis for the Lipopolysaccharide Export Activity of the Bacterial Lipopolysaccharide Transport System","year":2018,"lang":"en","type":"review","venue":"International Journal of Molecular Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lipopolysaccharide; Chemistry; Microbiology; Biology; Immunology","score_opus":0.028397839183035806,"score_gpt":0.3050545494197957,"score_spread":0.2766567102367599,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2889986000","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.33706567,0.64768374,0.0015700416,0.00043914816,0.012002376,0.00080934964,0.00038001014,0.000007640793,0.000042006974],"genre_scores_gemma":[0.47749144,0.5196173,0.0006997667,0.00005168003,0.0020343203,0.000024362049,0.000012583345,0.000032723347,0.000035815578],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99793386,0.0001161942,0.0007981892,0.00033100406,0.000596805,0.00022395134],"domain_scores_gemma":[0.9973969,0.000060688813,0.0016127832,0.00037419947,0.0005049641,0.00005049923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008258763,0.00027926554,0.00060098333,0.0001339016,0.00014483492,0.000069060334,0.0028224576,0.00034025472,0.000013262335],"category_scores_gemma":[0.0001356357,0.00014425427,0.001019138,0.00011476969,0.00067441835,0.000011277525,0.00020016312,0.00020618743,6.054897e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003066435,0.00008021799,0.000048150192,0.00088577066,0.0022815398,0.000021682674,0.0000661724,0.000027271746,0.6641606,0.0011328604,0.00022750194,0.3307616],"study_design_scores_gemma":[0.0004784746,0.000834218,0.00006535532,0.0024213195,0.0010455175,0.00103662,0.000084063344,0.00003523072,0.60217595,0.00006379149,0.39132085,0.00043859927],"about_ca_topic_score_codex":0.000027368365,"about_ca_topic_score_gemma":0.00002129536,"teacher_disagreement_score":0.39109334,"about_ca_system_score_codex":0.000048636102,"about_ca_system_score_gemma":0.0007563376,"threshold_uncertainty_score":0.5882519},"labels":[],"label_agreement":null},{"id":"W2895954140","doi":"10.1371/journal.pgen.1007726","title":"A central role for PBP2 in the activation of peptidoglycan polymerization by the bacterial cell elongation machinery","year":2018,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Research Resources; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"MreB; Biology; Peptidoglycan; Cytoskeleton; Cell biology; Cytokinesis; Actin; Cell division; FtsZ; Cell wall; Biochemistry; Cell","score_opus":0.006637982255454015,"score_gpt":0.2084760883937798,"score_spread":0.20183810613832578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2895954140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975595,0.00013289247,0.0011145263,0.00039910866,0.00014571172,0.00043815267,0.00007470041,0.0000046493897,0.00013076546],"genre_scores_gemma":[0.99830264,0.00008051716,0.0003236481,0.00017806621,0.0005749357,0.000037430655,0.00044432556,0.000016871132,0.000041558676],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992237,0.0000715315,0.00021232269,0.00019279336,0.00009782022,0.00020185052],"domain_scores_gemma":[0.9994756,0.000016170867,0.00013301101,0.00028396008,0.000072641735,0.000018645758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000107222586,0.000111256304,0.00008984541,0.000027380256,0.000074992226,0.000023449556,0.00026949262,0.00018461516,0.0000099542185],"category_scores_gemma":[0.000035408066,0.000076200035,0.000042398624,0.00010650551,0.00012744594,0.0000024327624,0.000050530693,0.000057622703,6.8858435e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012828012,0.00009509056,0.0008547303,0.000009374286,0.000012083043,2.1747649e-8,0.00018068444,0.000012010692,0.9961712,0.000029446592,0.0003813237,0.0021258048],"study_design_scores_gemma":[0.00043006754,0.000567296,0.0019679624,0.0000046892155,0.000018690682,0.0000010096169,0.00011465381,0.0010994159,0.9871858,0.000083711595,0.008432925,0.00009382194],"about_ca_topic_score_codex":0.000015302187,"about_ca_topic_score_gemma":0.000059949904,"teacher_disagreement_score":0.008985394,"about_ca_system_score_codex":0.000008078195,"about_ca_system_score_gemma":0.00004605648,"threshold_uncertainty_score":0.31073472},"labels":[],"label_agreement":null},{"id":"W2896317193","doi":"10.1139/cjm-2018-0481","title":"Restoration of polar-flagellum motility and biofilm-forming capacity in the <i>mmsB1</i> mutant of the alphaproteobacterium <i>Azospirillum brasilense</i> Sp245 points to a new role for a homologue of 3-hydroxyisobutyrate dehydrogenase","year":2018,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Flagellum; Azospirillum brasilense; Mutant; Biofilm; Biology; Motility; Bacteria; Microbiology; Strain (injury); Cell biology; Gene; Genetics; Microbial inoculant; Anatomy","score_opus":0.012586285468912347,"score_gpt":0.20605410115763945,"score_spread":0.1934678156887271,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2896317193","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99747777,0.0003879715,0.00015863279,0.0007922133,0.00021924532,0.00040174788,0.00055143685,7.231465e-7,0.00001028734],"genre_scores_gemma":[0.99840194,0.000021637095,0.0010055234,0.00041374116,0.000120019526,0.0000027281721,0.000015446018,0.0000102573185,0.0000086984965],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987548,0.00015630886,0.000575566,0.00019296633,0.00003672211,0.00028364235],"domain_scores_gemma":[0.9987791,0.000021139045,0.0004945809,0.0003303855,0.00025481035,0.000119983844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060308154,0.00014442316,0.0003226772,0.00012208855,0.000059345697,0.0000069647667,0.00043423692,0.00031700954,0.0000054798206],"category_scores_gemma":[0.00023892589,0.00010004869,0.00011695813,0.00016622772,0.000597966,0.000004988281,0.000059430447,0.00013464357,2.8723278e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001568287,0.000022995328,0.0037999225,0.00002219697,0.0000348894,0.0000018440076,0.0003299055,0.0000028149489,0.9949848,0.00002638202,0.00019164989,0.0004257545],"study_design_scores_gemma":[0.0005713764,0.0014645023,0.0046711713,0.000038004386,0.000024594428,0.0002529008,0.00011183673,0.000005045488,0.98603356,0.00023430098,0.006504418,0.00008829825],"about_ca_topic_score_codex":0.002915432,"about_ca_topic_score_gemma":0.034920525,"teacher_disagreement_score":0.032005094,"about_ca_system_score_codex":0.00002477403,"about_ca_system_score_gemma":0.0006038694,"threshold_uncertainty_score":0.9826897},"labels":[],"label_agreement":null},{"id":"W2897596931","doi":"10.1101/442814","title":"Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Wellcome Trust; Nvidia","keywords":"DNA replication; Replication (statistics); Genome; Biology; Origin of replication; Fork (system call); Genetics; Saccharomyces cerevisiae; DNA; Computational biology; Autonomously replicating sequence; DNA sequencing; Gene; Computer science","score_opus":0.015534186549883615,"score_gpt":0.22827617620276885,"score_spread":0.21274198965288524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897596931","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965978,0.00045159212,0.0005385725,0.00044801293,0.0005895556,0.00056375423,0.0007321668,0.00006115802,0.000017376164],"genre_scores_gemma":[0.9973501,0.0005952786,0.0010957313,0.00016566887,0.0005954981,0.000084602536,0.000020488296,0.00008291501,0.000009730351],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976379,0.0001042866,0.0005015624,0.0010949377,0.00025859918,0.00040265944],"domain_scores_gemma":[0.9962345,0.000014604533,0.00059695326,0.0026648198,0.0003953824,0.00009376007],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006268624,0.00042073062,0.0003455587,0.00011501523,0.00013875155,0.00007876017,0.0011340852,0.0011135676,0.000009350345],"category_scores_gemma":[0.00019620165,0.0003633925,0.00013890282,0.00020817142,0.00043557363,0.0000038612807,0.00059612765,0.00048264553,0.000009401629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041294432,0.000058433958,0.001573078,0.00008975917,0.00013915128,0.0000039068377,0.000005470338,0.000032353088,0.99759597,0.00039562362,0.000053261945,0.000011721873],"study_design_scores_gemma":[0.00017957449,0.00024900626,0.043775775,0.000096906624,0.000078120014,9.7834224e-8,0.0000030130045,0.000059365924,0.95290864,0.000006193888,0.0022267534,0.00041655594],"about_ca_topic_score_codex":0.00003713154,"about_ca_topic_score_gemma":0.000015461192,"teacher_disagreement_score":0.04468731,"about_ca_system_score_codex":0.00009005373,"about_ca_system_score_gemma":0.00033125363,"threshold_uncertainty_score":0.9998818},"labels":[],"label_agreement":null},{"id":"W2898952097","doi":"10.1016/j.bbagen.2018.10.018","title":"Chemotaxis by Pseudomonas putida (ATCC 17453) towards camphor involves cytochrome P450cam (CYP101A1)","year":2018,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - General Subjects","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Simon Fraser University","keywords":"Pseudomonas putida; Camphor; Borneol; Chemistry; Cytochrome; Chemotaxis; Monooxygenase; Bacteria; Biochemistry; Pseudomonas; Stereochemistry; Microbiology; Cytochrome P450; Metabolism; Biology; Enzyme; Organic chemistry","score_opus":0.008616945590340862,"score_gpt":0.24216934185859487,"score_spread":0.233552396268254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898952097","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939587,0.0004418004,0.000090158,0.0026263343,0.0007890883,0.00060234714,0.0006168723,0.00015635615,0.00071831216],"genre_scores_gemma":[0.9890508,0.000988438,0.0022015995,0.0021721555,0.0026393337,0.00008126283,0.0011328284,0.00015132208,0.0015822828],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99603844,0.0001741281,0.00063383137,0.0015687073,0.0004165403,0.0011683436],"domain_scores_gemma":[0.9976189,0.000015160464,0.000346459,0.0013635785,0.00027494685,0.00038095133],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002455062,0.00085291977,0.00066097383,0.00014937614,0.00032365357,0.00015526867,0.0011226645,0.00104186,0.00008928862],"category_scores_gemma":[0.00008556503,0.0007853168,0.00039356644,0.0005239239,0.00092251983,0.000022163238,0.0008522982,0.00036473473,0.00013786006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028767274,0.0002985678,0.000009355517,0.0000299249,0.00022237215,0.000005366873,0.00009051292,4.5350987e-7,0.96642244,0.000071180424,0.030652424,0.0019097051],"study_design_scores_gemma":[0.0010763212,0.0018212183,0.0015692484,0.000024883451,0.000073276206,0.00003845955,0.000030618376,0.000048350466,0.958006,0.00017434626,0.03613609,0.0010011583],"about_ca_topic_score_codex":0.00033379774,"about_ca_topic_score_gemma":0.00011673175,"teacher_disagreement_score":0.008416437,"about_ca_system_score_codex":0.000076147175,"about_ca_system_score_gemma":0.00033314028,"threshold_uncertainty_score":0.9994598},"labels":[],"label_agreement":null},{"id":"W2899432151","doi":"","title":"Recombinase in Trio (RIT) Elements in Bacterial Genomes: Assessing the Distribution and Mobility of a Novel yet Widespread Set of Mobile Genes","year":2016,"lang":"en","type":"dissertation","venue":"TSpace","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mobile genetic elements; Recombinase; Genome; Bacterial genome size; Biology; Set (abstract data type); Gene; Genetics; Computational biology; Evolutionary biology; Computer science; Recombination","score_opus":0.015256533527640692,"score_gpt":0.3250247125375551,"score_spread":0.30976817900991443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2899432151","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978313,0.0009923314,0.00001943858,0.000041164978,0.00029830384,0.0004742887,0.00029428556,0.0000028298455,0.00004605561],"genre_scores_gemma":[0.99570423,0.0016757582,0.00013468604,0.0000034935426,0.000050154405,0.00006266158,0.0021788166,0.000015819094,0.00017436036],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884796,0.000079265534,0.00046620297,0.00033707713,0.00008178302,0.00018773164],"domain_scores_gemma":[0.99917233,0.000029690966,0.00036469806,0.00033000376,0.00007957211,0.00002369274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037328037,0.0001853959,0.00033032772,0.00006118424,0.000023506773,0.000013885232,0.00017966269,0.00050277234,0.000015517813],"category_scores_gemma":[0.00009829021,0.00013977084,0.00005530468,0.00010813745,0.000099711564,0.0000035703429,0.000085283325,0.000113146365,2.1734752e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024152672,0.00014710242,0.0024467479,0.00012027785,0.000023995146,5.1900463e-7,0.00016484463,0.0000013793094,0.98659027,0.000009871372,0.000017836797,0.010235631],"study_design_scores_gemma":[0.0015501833,0.00038573943,0.025274642,0.00020385673,0.000027570057,0.0000023310233,0.0010038237,0.000013535009,0.96787375,0.000052394284,0.003413615,0.00019858293],"about_ca_topic_score_codex":0.00027313756,"about_ca_topic_score_gemma":0.00069649174,"teacher_disagreement_score":0.022827893,"about_ca_system_score_codex":0.000030441694,"about_ca_system_score_gemma":0.00014368442,"threshold_uncertainty_score":0.569969},"labels":[],"label_agreement":null},{"id":"W2901580389","doi":"10.1038/s41598-018-35503-3","title":"The absence of SigX results in impaired carbon metabolism and membrane fluidity in Pseudomonas aeruginosa","year":2018,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Région Normandie; Campus France; European Commission","keywords":"Biochemistry; Membrane fluidity; Mutant; Biology; Chemistry; Membrane; Gene","score_opus":0.00853166814860937,"score_gpt":0.22922028008414375,"score_spread":0.22068861193553438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2901580389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996857,0.0006789911,0.0000016823327,0.00020464891,0.0017184698,0.0001749638,0.0000045279144,0.0000049691535,0.0003547483],"genre_scores_gemma":[0.9993471,0.00018907413,0.00011769004,0.000008964552,0.00008062668,0.0000067146457,0.000017224424,0.000005901596,0.0002267093],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985712,0.000056526835,0.0004605764,0.0005306343,0.0001373592,0.0002436933],"domain_scores_gemma":[0.99898934,0.000011885007,0.00018376284,0.00067563436,0.000099456105,0.000039907194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001411863,0.00010208445,0.00015013662,0.000080209,0.000076897,0.000040630133,0.00014974215,0.00016621444,0.0000014312812],"category_scores_gemma":[0.00028417888,0.00007511536,0.000030933646,0.00028089006,0.00081155496,0.000002668307,0.0001780935,0.00007095021,3.8841358e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006633178,0.000024764562,0.002262599,0.000004815359,0.0000047115004,0.000018336048,0.00006682221,0.0000014660342,0.99585867,0.000018870307,0.00016992696,0.0015026983],"study_design_scores_gemma":[0.0002474387,0.00007049355,0.020763973,0.000011838912,0.000002946947,0.000047606303,0.00003551979,0.000047796584,0.96147597,0.00059031113,0.016614087,0.000092036105],"about_ca_topic_score_codex":0.00022125899,"about_ca_topic_score_gemma":0.0020025366,"teacher_disagreement_score":0.034382705,"about_ca_system_score_codex":0.000006631054,"about_ca_system_score_gemma":0.000093359704,"threshold_uncertainty_score":0.30631152},"labels":[],"label_agreement":null},{"id":"W2907852965","doi":"10.1074/jbc.ra118.006447","title":"Investigating the stability of the SecA–SecYEG complex during protein translocation across the bacterial membrane","year":2019,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; ATP hydrolysis; Processivity; Biology; Transport protein; ATPase; Biophysics; Translocase; Membrane transport protein; Biochemistry; AAA proteins; Twin-arginine translocation pathway; Cell biology; Inner membrane; Escherichia coli; Membrane protein; Chromosomal translocation; Membrane; Enzyme","score_opus":0.022184331059489654,"score_gpt":0.24274731196596544,"score_spread":0.22056298090647578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2907852965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979774,0.00014295822,0.000007978911,0.0014038332,0.00013995195,0.00023574372,0.00002852861,0.000003408536,0.00006021965],"genre_scores_gemma":[0.9993861,0.000055234144,0.00008516947,0.00006891785,0.00035448364,0.0000047556186,0.000010917831,0.0000069968614,0.000027482127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988678,0.00011697476,0.000488457,0.00017786793,0.00014542749,0.0002034548],"domain_scores_gemma":[0.9988712,0.000029831433,0.00050226937,0.00041274852,0.00014487973,0.000039073424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061247655,0.00013846722,0.00021287291,0.00000381828,0.00012767526,0.000024747367,0.00071070506,0.00031474172,0.00010793027],"category_scores_gemma":[0.00021686796,0.00005857776,0.0001931411,0.000086838925,0.00051946094,0.0000032264963,0.00020974723,0.0003342676,8.729794e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011632551,0.00003765153,0.002452229,0.0000443383,0.00003607702,2.1035615e-7,0.00005772552,0.000010334939,0.99692154,0.0000042387646,0.000009154467,0.0003101982],"study_design_scores_gemma":[0.00046844294,0.00013645657,0.02103488,0.000027273123,0.000008301668,0.000049471877,0.00023173145,0.000006842382,0.9765149,0.000059382495,0.0013811014,0.00008124136],"about_ca_topic_score_codex":0.0000047207272,"about_ca_topic_score_gemma":0.0000042102415,"teacher_disagreement_score":0.020406641,"about_ca_system_score_codex":0.000014582804,"about_ca_system_score_gemma":0.000074424985,"threshold_uncertainty_score":0.24275763},"labels":[],"label_agreement":null},{"id":"W2908053593","doi":"10.1111/gtc.12667","title":"Relation between rotation of MreB actin and cell width of <i>Escherichia coli</i>","year":2018,"lang":"en","type":"article","venue":"Genes to Cells","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; National Institute of Genetics","keywords":"MreB; Peptidoglycan; Cell; Biology; Actin; Bacterial cell structure; Cell biology; Biophysics; Cytoskeleton; Cell wall; Bacteria; Genetics","score_opus":0.007775927562840651,"score_gpt":0.22050796163588568,"score_spread":0.21273203407304503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2908053593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981547,0.00016086252,0.00092176616,0.00006330303,0.00014627582,0.00015391287,0.000026456852,0.000004219748,0.00036848767],"genre_scores_gemma":[0.9932307,0.00015618482,0.006127152,0.00004895171,0.0001908509,0.0000029098178,0.000037329948,0.000010832241,0.00019511122],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994359,0.000025428668,0.00018985449,0.00018497852,0.000055436492,0.000108373744],"domain_scores_gemma":[0.9995532,0.00000644168,0.000119350094,0.00018604986,0.00009548387,0.000039468192],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008965001,0.00008197324,0.00012367625,0.00003448103,0.000023644272,0.0000047311755,0.00009020306,0.00019258699,0.000010356348],"category_scores_gemma":[0.000008275834,0.000080965736,0.000023819612,0.00008669639,0.000087681015,0.0000016883953,0.00008570683,0.000029532552,0.0000061007013],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004610454,0.00001675327,0.002183246,0.00001988055,0.0000120365285,5.3344063e-8,0.000039029783,0.0000059075487,0.9901761,0.0000065111803,0.00023996565,0.0072544217],"study_design_scores_gemma":[0.00020918749,0.0007912457,0.009394015,0.0000049905193,0.000018246752,2.6173552e-7,0.000018532248,0.00000712542,0.9666349,0.00002815231,0.022809956,0.000083357714],"about_ca_topic_score_codex":0.000024292362,"about_ca_topic_score_gemma":0.000013921092,"teacher_disagreement_score":0.023541162,"about_ca_system_score_codex":0.0000027475844,"about_ca_system_score_gemma":0.00002531539,"threshold_uncertainty_score":0.3301687},"labels":[],"label_agreement":null},{"id":"W2913051577","doi":"10.1016/j.bpj.2018.11.2705","title":"Cellular Distribution and Diffusivity of Hfq with Interacting RNAs","year":2019,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"RNA; Transfer RNA; RNase P; Cell biology; Biology; Cytoplasm; Messenger RNA; Genetics; Gene","score_opus":0.003947024882091864,"score_gpt":0.20385344584229836,"score_spread":0.1999064209602065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2913051577","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984841,0.00003183558,0.0011315591,0.00011430583,0.00012446722,0.00005017354,0.000012009428,0.0000026486823,0.000048948317],"genre_scores_gemma":[0.99944806,0.00005717202,0.00020781894,0.000016242444,0.0002045223,5.473516e-7,0.000022735125,0.00000680196,0.00003612249],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99953306,0.000022987919,0.000117789685,0.00013466812,0.00006983972,0.000121650344],"domain_scores_gemma":[0.9996572,0.000006155678,0.00011398891,0.000115227005,0.00005758458,0.00004984114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000056482928,0.000081105914,0.00011889961,0.000013054261,0.000033228014,0.00001975132,0.00007968557,0.0000971589,0.000009194116],"category_scores_gemma":[0.0000151220775,0.000058426496,0.00004145933,0.000040088435,0.00007593956,0.0000029514665,0.00007784399,0.0001278738,0.000002651712],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011330049,0.000054331686,0.0016884911,0.000008803923,0.000026458205,0.0000021162552,0.000005710703,0.0000017812091,0.9954998,0.00010235094,0.000024114532,0.0024727783],"study_design_scores_gemma":[0.0004034854,0.0007759021,0.008451362,0.000019888857,0.000013591722,0.00006486343,0.000026710464,0.000058126257,0.9865067,0.000020374324,0.0035695876,0.000089414774],"about_ca_topic_score_codex":0.0000035981088,"about_ca_topic_score_gemma":9.029959e-7,"teacher_disagreement_score":0.008993071,"about_ca_system_score_codex":0.0000053983827,"about_ca_system_score_gemma":0.000019075394,"threshold_uncertainty_score":0.23825634},"labels":[],"label_agreement":null},{"id":"W2913153017","doi":"10.1107/s010876731809815x","title":"Crystallisation and initial characterization of the periplasmic domain of TraG, the conjugative entry exclusion protein from the F-plasmid","year":2018,"lang":"en","type":"article","venue":"Acta Crystallographica Section A Foundations and Advances","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Periplasmic space; Secretion; Biology; Plasmid; Bacterial outer membrane; Bacterial conjugation; Inner membrane; Cell biology; DNA; Biochemistry; Escherichia coli; Gene","score_opus":0.006213073983390955,"score_gpt":0.22841246243653607,"score_spread":0.2221993884531451,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2913153017","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99617547,0.00012114567,0.0012747875,0.0016698842,0.00019542174,0.000387241,0.000087365974,0.000005803021,0.00008287156],"genre_scores_gemma":[0.9985538,0.0008011885,0.00020999835,0.000094662646,0.0001870949,0.000028122122,0.000101767364,0.0000070528463,0.000016320359],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992924,0.000114589864,0.00021586995,0.00019876494,0.00009043735,0.00008797316],"domain_scores_gemma":[0.9993666,0.00002931453,0.00025865,0.00020644182,0.00012242494,0.000016585493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013033085,0.00010204781,0.00009547792,0.000033339864,0.00039128217,0.000031788826,0.00013041099,0.00011849174,0.000018180439],"category_scores_gemma":[0.000048142472,0.000057005313,0.000042925774,0.00019795759,0.0010253219,0.000019170418,0.00011032335,0.0000832149,2.8960791e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008962198,0.000025917316,0.0008904847,0.0000072506305,0.0000310408,2.2201595e-8,0.00025967043,5.5863984e-7,0.9965539,0.00034775375,0.000006293772,0.00178751],"study_design_scores_gemma":[0.0012166902,0.0011294594,0.132077,0.00010863925,0.00008612666,0.000020453817,0.0018878757,0.00012344925,0.5126575,0.0060128463,0.34439433,0.0002855992],"about_ca_topic_score_codex":0.00003533693,"about_ca_topic_score_gemma":0.00040053864,"teacher_disagreement_score":0.48389634,"about_ca_system_score_codex":0.0000036367107,"about_ca_system_score_gemma":0.000032391876,"threshold_uncertainty_score":0.37778413},"labels":[],"label_agreement":null},{"id":"W2913592308","doi":"10.1101/536201","title":"<i>Escherichia coli</i> O157:H7 responds to phosphate starvation by modifying LPS involved in biofilm formation","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cegep de Saint Hyacinthe; Université Laval; University of Saskatchewan; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mutant; Regulon; Escherichia coli; Biofilm; Microbiology; Biology; Gene; Chemistry; Bacteria; Biochemistry; Genetics","score_opus":0.011229734345243112,"score_gpt":0.21269742368153327,"score_spread":0.20146768933629017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2913592308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928272,0.0011446512,0.00291742,0.00049178675,0.0009422487,0.0011578595,0.0004133729,0.00009705862,0.000008436896],"genre_scores_gemma":[0.99333197,0.00091663015,0.004242788,0.00089395745,0.00023363653,0.00022204139,0.000024270088,0.00011540268,0.000019290152],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971821,0.00014153922,0.00068985374,0.0010914969,0.00025251086,0.0006425054],"domain_scores_gemma":[0.9978458,0.000012132571,0.00040900748,0.0012301428,0.0003182106,0.00018465142],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005994169,0.0005586108,0.00050034624,0.00028777192,0.00008566827,0.0001691778,0.00065361115,0.001468787,0.000011071613],"category_scores_gemma":[0.00014258892,0.00063748716,0.000116402065,0.0005328499,0.000068682966,0.000019537172,0.0007726504,0.000546815,0.0000485309],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022675331,0.00008952435,0.001566372,0.00016558741,0.000048621456,0.0000035535784,0.000007755,0.00021014051,0.9960452,0.000050880415,0.0015768931,0.000008723139],"study_design_scores_gemma":[0.00071576383,0.00022807105,0.0071876035,0.00014591718,0.000027862194,7.784588e-9,0.000005026499,0.000543638,0.9406629,0.0000020659738,0.049756188,0.0007249487],"about_ca_topic_score_codex":0.00008461418,"about_ca_topic_score_gemma":0.0000255419,"teacher_disagreement_score":0.05538229,"about_ca_system_score_codex":0.00018765994,"about_ca_system_score_gemma":0.00037617906,"threshold_uncertainty_score":0.9998275},"labels":[],"label_agreement":null},{"id":"W2914152077","doi":"10.1073/pnas.1811589116","title":"SraL sRNA interaction regulates the terminator by preventing premature transcription termination of <i>rho</i> mRNA","year":2019,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Terminator (solar); Transcription (linguistics); Termination factor; Biology; Messenger RNA; RNA; Base pair; Cell biology; RNA polymerase; Molecular biology; Gene; Genetics; Physics","score_opus":0.010492101462934056,"score_gpt":0.25939001344445445,"score_spread":0.2488979119815204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914152077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977303,0.00013809362,5.0049596e-8,0.0012644217,0.000053457163,0.00019818745,0.000015254407,0.0000028353834,0.0005973924],"genre_scores_gemma":[0.99935496,0.000079147765,0.00019964325,0.00006346617,0.000053391308,0.0000034944667,0.0000014873755,0.0000031716556,0.00024122675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999171,0.000008585026,0.0002461161,0.00017658477,0.00030694812,0.00009074894],"domain_scores_gemma":[0.9993717,0.0000137539855,0.00044167964,0.000014493339,0.00014873159,0.000009644159],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051211246,0.00007245468,0.0000945107,0.000046543115,0.00006450075,0.00001314404,0.0004582552,0.00016337929,0.00000560035],"category_scores_gemma":[0.000065716195,0.000043627046,0.00007066285,0.00018873923,0.00031289837,0.000025944602,0.00006709805,0.000100277364,2.5138368e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022992152,0.000028741175,0.001043149,0.00005090738,0.00001047087,4.0081313e-10,0.000047175494,0.000009988227,0.9973506,0.00022158517,0.00036101352,0.0008533947],"study_design_scores_gemma":[0.000114465925,0.00012458613,0.0066949367,0.00006258266,0.0000102753565,0.000005745375,0.00008695943,0.0002226046,0.98968154,0.001659144,0.0012876079,0.000049535665],"about_ca_topic_score_codex":0.0000020042414,"about_ca_topic_score_gemma":6.4092035e-8,"teacher_disagreement_score":0.0076690256,"about_ca_system_score_codex":0.00000764136,"about_ca_system_score_gemma":0.000012993285,"threshold_uncertainty_score":0.17790593},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"agree"},{"id":"W2914275262","doi":"10.1107/s0108767318099002","title":"Characterization of <i>C</i>-terminal structure of MinC and its implication in evolution of bacterial cell division","year":2018,"lang":"en","type":"article","venue":"Acta Crystallographica Section A Foundations and Advances","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Division (mathematics); Terminal (telecommunication); Characterization (materials science); Cell division; Chemistry; Cell; Materials science; Biophysics; Biology; Nanotechnology; Biochemistry; Engineering; Mathematics; Telecommunications","score_opus":0.0037996302885286463,"score_gpt":0.22571405614528695,"score_spread":0.2219144258567583,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914275262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99858147,0.00017735468,0.000830693,0.000031503012,0.0001259527,0.00015267145,0.000079479076,0.0000033395881,0.000017567118],"genre_scores_gemma":[0.99841076,0.0009932593,0.00032359807,0.0000033051722,0.00006938317,0.000003849836,0.00018513252,0.0000057094035,0.0000050005656],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993694,0.000029985866,0.00027073073,0.00019722496,0.0000541529,0.00007853775],"domain_scores_gemma":[0.9994322,0.0000066016905,0.00027378098,0.000112341724,0.00015528487,0.00001977925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000056569883,0.00008365023,0.00012984604,0.00017136509,0.00004791875,0.0000073418614,0.000055286062,0.00015113145,0.000011771095],"category_scores_gemma":[0.000019133766,0.00008024781,0.000024064671,0.00023277932,0.0002064993,0.000023335178,0.00005036227,0.000038340517,9.848236e-9],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008499618,0.00004827772,0.0047638793,0.000054884495,0.0000072042067,2.414403e-8,0.00003367822,5.9191933e-7,0.9933872,0.000101248,5.5889257e-7,0.0015174136],"study_design_scores_gemma":[0.00047040323,0.00080672663,0.16392106,0.000027698208,0.000016334661,0.0000067138503,0.00006047709,0.000049871236,0.8287067,0.00030949735,0.005525252,0.00009928271],"about_ca_topic_score_codex":0.000014393273,"about_ca_topic_score_gemma":0.00016550142,"teacher_disagreement_score":0.16468057,"about_ca_system_score_codex":0.000004271093,"about_ca_system_score_gemma":0.000023903438,"threshold_uncertainty_score":0.3272411},"labels":[],"label_agreement":null},{"id":"W2915546597","doi":"10.1101/559138","title":"Growth Phase Dependent Chromosome Condensation and H-NS Protein Redistribution in <i>E. coli</i> Under Osmotic Stress","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Osmotic shock; rpoS; DNA gyrase; Nucleoid; Osmotic concentration; Sigma factor; Premature chromosome condensation; Sodium; Biophysics; Chemistry; Osmotic pressure; Bacillus subtilis; Biology; Cell biology; Biochemistry; Escherichia coli; Gene; Genetics; Bacteria; Chromosome; Gene expression; Promoter; RNA polymerase","score_opus":0.00841830214721157,"score_gpt":0.21687088605439464,"score_spread":0.20845258390718308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2915546597","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947242,0.00084909186,0.0014525745,0.00034550446,0.00054172205,0.0012119494,0.0008161372,0.000055271772,0.0000035307444],"genre_scores_gemma":[0.99854213,0.00042841164,0.00036578087,0.00012571414,0.00028679988,0.00015675656,0.000022439612,0.00006562549,0.00000632372],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977301,0.00012681322,0.00047531558,0.0010207013,0.00020270442,0.0004443648],"domain_scores_gemma":[0.9984946,0.000008380341,0.00032290537,0.0007707826,0.00027090762,0.00013238341],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00031707328,0.00043618484,0.00040810966,0.00015284886,0.000069310365,0.000118490854,0.00032509115,0.0012694974,0.000008630987],"category_scores_gemma":[0.000101260885,0.0004840633,0.0000740905,0.0001755782,0.00015247813,0.000008648481,0.000554727,0.00048820916,0.000009139009],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009523201,0.00021015095,0.00093327684,0.00024209138,0.000063766034,0.0000124919,0.0000017063435,0.00002939234,0.99785054,0.00052613707,0.000033199438,0.0000019940578],"study_design_scores_gemma":[0.0017383979,0.00029628052,0.011470932,0.00021143559,0.000048371618,7.55174e-8,0.0000035038383,0.00015448233,0.9849938,0.000019289164,0.00051443273,0.00054901175],"about_ca_topic_score_codex":0.000041672247,"about_ca_topic_score_gemma":0.00001485956,"teacher_disagreement_score":0.012856774,"about_ca_system_score_codex":0.00013610287,"about_ca_system_score_gemma":0.0003932271,"threshold_uncertainty_score":0.9997611},"labels":[],"label_agreement":null},{"id":"W2916725374","doi":"10.3389/fmicb.2019.00279","title":"Crosstalk Regulation Between Bacterial Chromosome Replication and Chromosome Partitioning","year":2019,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Caulobacter crescentus; Chromosome segregation; Biology; Crosstalk; Cell biology; Cell cycle; DNA replication; DnaA; Origin of replication; Genetics; Cell division; Chromosome; Cell; DNA; Gene","score_opus":0.018844051130234327,"score_gpt":0.2722581505660595,"score_spread":0.25341409943582516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916725374","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.028786391,0.9677226,0.00029270147,0.00004475106,0.0016418165,0.0009316195,0.0005099724,0.000024570878,0.00004559657],"genre_scores_gemma":[0.0020234704,0.9838041,0.0018286797,0.000026799084,0.0008393811,0.000082231665,0.0110196825,0.00006578964,0.00030983414],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99750614,0.0002193659,0.0006868395,0.0011258284,0.00003371147,0.00042810853],"domain_scores_gemma":[0.99859357,0.000015683096,0.00043397478,0.0008617208,0.000041598098,0.00005342863],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00028833695,0.0004194859,0.0012176889,0.00021993356,0.000072772345,0.00004671556,0.00033639837,0.0018923596,0.000026007965],"category_scores_gemma":[0.00006153673,0.00040505975,0.00017493231,0.00017577363,0.00030388727,0.0000057904845,0.0003163031,0.00030358668,0.000020833499],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004843316,0.00004402667,0.00070958,0.0022562912,0.00029639195,0.0000031694212,0.000017439423,9.034251e-7,0.4421402,0.000036619735,0.004681012,0.54976594],"study_design_scores_gemma":[0.0003940085,0.00024372528,0.00015584256,0.0005456336,0.00015707675,0.00007907947,0.0000040183963,0.0000010712672,0.006052315,0.00006403579,0.99186426,0.00043891277],"about_ca_topic_score_codex":0.0000068237237,"about_ca_topic_score_gemma":0.000009385495,"teacher_disagreement_score":0.9871833,"about_ca_system_score_codex":0.00007937513,"about_ca_system_score_gemma":0.00015719155,"threshold_uncertainty_score":0.99984014},"labels":[],"label_agreement":null},{"id":"W2917111620","doi":"10.1128/jb.184.8.2173-2180.2002","title":"Functional and Mutational Analysis of Conjugative Transfer Region 1 (Tra1) from the IncHI1 Plasmid R27","year":2002,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; ORFS; Genetics; Complementation; Plasmid; Open reading frame; Nucleic acid sequence; Gene; Leucine zipper; Mutant; Peptide sequence","score_opus":0.015599659827517352,"score_gpt":0.2100325106749489,"score_spread":0.19443285084743156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2917111620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961881,0.0006349477,0.0012895268,0.0015139717,0.00021330957,0.000046543202,0.00007154354,0.0000015068803,0.00004055647],"genre_scores_gemma":[0.9984078,0.00067958934,0.00024101173,0.00031925485,0.00023651941,0.0000015523196,0.00007505627,0.0000062561103,0.00003296959],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991561,0.00011404233,0.0003905078,0.00015185308,0.00007859642,0.00010889928],"domain_scores_gemma":[0.9993815,0.00007991044,0.00021252279,0.00012867515,0.00015705246,0.000040350773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012636426,0.000105803985,0.0002895339,0.00010082181,0.000045406206,0.000008953693,0.00013782499,0.00023551247,0.00018435379],"category_scores_gemma":[0.000059858663,0.00007145017,0.00015390718,0.0001326364,0.00031323612,0.0000045284537,0.000038295904,0.00014365176,0.0000010788825],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003478187,0.00006436365,0.010553134,0.0000024279752,0.001498293,0.000006441866,0.00015088546,0.00008452217,0.98412764,0.0001850024,0.00073637185,0.0022430802],"study_design_scores_gemma":[0.002002904,0.0019956003,0.80890846,0.000018155893,0.0011362089,0.00037762368,0.00020927738,0.0003556565,0.16163513,0.000565039,0.022538202,0.00025773264],"about_ca_topic_score_codex":0.000013126963,"about_ca_topic_score_gemma":0.000037097994,"teacher_disagreement_score":0.82249254,"about_ca_system_score_codex":0.0000068101645,"about_ca_system_score_gemma":0.00002753209,"threshold_uncertainty_score":0.29136536},"labels":[],"label_agreement":null},{"id":"W2918856668","doi":"10.1128/microbiolspec.psib-0006-2018","title":"The Dynamic Structures of the Type IV Pilus","year":2019,"lang":"en","type":"review","venue":"Microbiology Spectrum","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McMaster University; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Pilus; Flagellum; Biology; Secretion; Motility; Microbiology; Bacteria; Cell biology; Genetics; Biochemistry; Gene; Escherichia coli","score_opus":0.009460991613414649,"score_gpt":0.25651675074520447,"score_spread":0.24705575913178981,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2918856668","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034108395,0.9929399,0.0000031916131,0.00022777393,0.0024952595,0.0005801233,0.00018575673,0.000009006409,0.00014818939],"genre_scores_gemma":[0.0027885253,0.99504006,0.00003265493,0.00006418644,0.00017866743,0.0000095977475,0.00026104506,0.00004567914,0.0015795806],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99841815,0.00020716015,0.00045069132,0.00048505352,0.000035364345,0.00040358052],"domain_scores_gemma":[0.99823165,0.000031317773,0.00044706804,0.0012275807,0.00004001991,0.000022376164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014200067,0.00037162888,0.00074450596,0.000043230528,0.00013581787,0.000017380635,0.0012885962,0.0011779218,0.000023630264],"category_scores_gemma":[0.00004778954,0.0001840297,0.00043898032,0.00017794798,0.00058871147,5.2602445e-7,0.00071704865,0.00040846402,0.000038672133],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009528866,0.00005469784,0.00002249302,0.0019203178,0.0012585542,0.000002300792,0.000010443796,0.0000020109424,0.7129926,0.0017509973,0.006142861,0.27574745],"study_design_scores_gemma":[0.00010515236,0.00023681419,0.000016955375,0.00014950325,0.00020137952,0.0001559776,0.0000030136268,3.286155e-7,0.006936664,0.00017095072,0.99180335,0.00021992327],"about_ca_topic_score_codex":0.00000846319,"about_ca_topic_score_gemma":0.0001303799,"teacher_disagreement_score":0.9856605,"about_ca_system_score_codex":0.000028394987,"about_ca_system_score_gemma":0.00027252984,"threshold_uncertainty_score":0.9085212},"labels":[],"label_agreement":null},{"id":"W2921715879","doi":"10.1021/acschembio.8b01066","title":"A Chemical Inhibitor of Cell Growth Reduces Cell Size in <i>Bacillus subtilis</i>","year":2019,"lang":"en","type":"article","venue":"ACS Chemical Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Bacillus subtilis; FtsZ; Cell growth; Cell envelope; Cell biology; Cell division; Cell; Biology; Lipid II; Bacterial cell structure; Cell membrane; Biochemistry; Cell cycle; Small molecule; Bacteria; Chemistry; Biophysics; Escherichia coli; Gene; Genetics","score_opus":0.0038289373772874944,"score_gpt":0.19673738482000325,"score_spread":0.19290844744271576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2921715879","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969922,0.0005063435,0.0000028265117,0.00023460032,0.00025622503,0.00022882325,0.000052214677,0.000016154721,0.0017106266],"genre_scores_gemma":[0.9980946,0.00029894762,0.00080365455,0.00024171881,0.00019869769,0.000016986613,0.00016762168,0.000025906607,0.00015183477],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99828166,0.000053638636,0.00046672323,0.0006536093,0.000077541736,0.00046681403],"domain_scores_gemma":[0.9991828,0.000059145917,0.00016054996,0.0004234044,0.00008832383,0.00008577335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013819804,0.000259428,0.0004218291,0.000053053893,0.000011086606,0.0000067209585,0.00047901095,0.0010670454,0.00005646952],"category_scores_gemma":[0.00014089532,0.00023487066,0.00012202321,0.00018725256,0.0003058918,0.00000293942,0.00042505644,0.00026242028,0.00003342377],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022247309,0.00020740063,0.002141317,0.00004520568,0.0000123797845,0.000001436259,0.000016303818,2.0072478e-7,0.99660367,0.000053622523,0.00029595086,0.00040001582],"study_design_scores_gemma":[0.0012803779,0.00033355053,0.000099752055,0.00000963435,0.000009709152,0.000007662603,0.000026445183,0.0000019323497,0.9930115,0.00022065261,0.0047266018,0.00027219334],"about_ca_topic_score_codex":0.000024103028,"about_ca_topic_score_gemma":0.0000025355573,"teacher_disagreement_score":0.0044306507,"about_ca_system_score_codex":0.000019138799,"about_ca_system_score_gemma":0.000077086435,"threshold_uncertainty_score":0.9577748},"labels":[],"label_agreement":null},{"id":"W2936568025","doi":"10.1007/s10534-019-00188-2","title":"Staphylococcus aureus heme and siderophore-iron acquisition pathways","year":2019,"lang":"en","type":"article","venue":"BioMetals","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Siderophore; Staphylococcus aureus; Heme; Biochemistry; Microbiology; Chemistry; Bacteria; Hemoglobin; Biology; Enzyme; Gene","score_opus":0.007975424233463552,"score_gpt":0.21423727268545703,"score_spread":0.20626184845199347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2936568025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971372,0.0016673512,0.000053297194,0.00014211384,0.00027938705,0.00023214816,0.00005288808,0.000021289568,0.0004143236],"genre_scores_gemma":[0.9981741,0.00040045477,0.00052748644,0.00023599113,0.00017259191,0.000010373336,0.00012468468,0.000019103225,0.00033525052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991151,0.000029463494,0.00016151465,0.00038128445,0.00008186843,0.00023073664],"domain_scores_gemma":[0.99946606,0.0000046114337,0.000069003865,0.00035676718,0.0000390393,0.00006454567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000111246496,0.00015340895,0.00015994103,0.000085399355,0.000039359064,0.00003396858,0.0001281212,0.00030491187,0.000093573624],"category_scores_gemma":[0.000011945368,0.00013565458,0.00005849033,0.00011252499,0.00008526108,0.0000025920244,0.00017642239,0.00005118394,0.000072655435],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035145968,0.000028209277,0.0010729064,0.000018218641,0.000025561998,0.0000016676929,0.0000074735863,6.6581094e-7,0.99520653,0.00015909928,0.00028778563,0.0031567246],"study_design_scores_gemma":[0.00047204088,0.0006479598,0.010311663,0.000006306653,0.000013811223,0.000007978375,0.000028486293,0.000009471384,0.9462064,0.00017445331,0.041900318,0.00022110165],"about_ca_topic_score_codex":0.000008960648,"about_ca_topic_score_gemma":0.0000035952914,"teacher_disagreement_score":0.049000133,"about_ca_system_score_codex":0.0000065129625,"about_ca_system_score_gemma":0.000021657637,"threshold_uncertainty_score":0.5531833},"labels":[],"label_agreement":null},{"id":"W2948691694","doi":"10.1038/s41579-019-0212-7","title":"The bacterial cell cycle, chromosome inheritance and cell growth","year":2019,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Wellcome Trust","keywords":"Biology; Inheritance (genetic algorithm); Genetics; Chromosome; Cell cycle; Cell; Cell biology; Chromosome segregation; Cell division; Evolutionary biology; Gene","score_opus":0.009663151735700263,"score_gpt":0.2556176797342814,"score_spread":0.24595452799858114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2948691694","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005127133,0.99479073,0.000002887533,0.00006313343,0.0022525312,0.0016713787,0.0002877773,0.000017143388,0.0004016786],"genre_scores_gemma":[0.000096040465,0.9957412,0.00027252667,0.00023474307,0.0010745662,0.0001132517,0.0012488026,0.0000942067,0.0011246591],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966326,0.00058798597,0.00092119904,0.0011529356,0.00004582553,0.0006595067],"domain_scores_gemma":[0.99783057,0.000070361915,0.00082026375,0.0010988478,0.00008989916,0.00009006946],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004997589,0.0008205493,0.0020329417,0.00007208184,0.0001733971,0.000073615214,0.00104839,0.0043681,0.000024952165],"category_scores_gemma":[0.00008390265,0.0004997704,0.0005916461,0.0001975659,0.0003669469,0.000003030732,0.00072578766,0.0013940886,0.0001736582],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039065533,0.00007230634,0.0000019720358,0.012556101,0.00014374265,0.0000070508977,0.000004493072,1.321374e-8,0.4935306,0.00009421567,0.0171317,0.47641873],"study_design_scores_gemma":[0.00027431073,0.00028211862,7.6954746e-7,0.00077283615,0.0003006539,0.00025644468,0.0000012190037,3.8891105e-8,0.0048642815,0.000013631787,0.9926601,0.0005735964],"about_ca_topic_score_codex":0.0000022286608,"about_ca_topic_score_gemma":0.000015254655,"teacher_disagreement_score":0.9755284,"about_ca_system_score_codex":0.000035130735,"about_ca_system_score_gemma":0.0002173299,"threshold_uncertainty_score":0.99974537},"labels":[],"label_agreement":null},{"id":"W2949618019","doi":"10.1186/s12864-018-4538-8","title":"High-throughput detection of RNA processing in bacteria","year":2018,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Simon Fraser University","funders":"Genome Canada; Canadian Institutes of Health Research; Genome British Columbia; Cystic Fibrosis Foundation Therapeutics","keywords":"Biology; DNA microarray; Rna processing; Computational biology; Bacteria; Throughput; Proteomics; RNA; Genetics; Gene expression; Computer science; Gene","score_opus":0.010710763281288631,"score_gpt":0.2263924504877052,"score_spread":0.21568168720641656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949618019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960643,0.00015252293,0.0032660512,0.00002281319,0.000290407,0.00010096052,0.000008567153,0.0000074971385,0.00008685168],"genre_scores_gemma":[0.9898184,0.00008504759,0.0095983,0.00003389518,0.00038034117,0.0000050459284,0.000020118761,0.000016276857,0.000042570693],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993312,0.000021116437,0.00021389202,0.00023287714,0.000035387475,0.00016556721],"domain_scores_gemma":[0.99958616,0.000001562688,0.00010195957,0.00022567424,0.00006200218,0.000022627431],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009650012,0.000096398806,0.00012158392,0.000049102848,0.000030302215,0.0000114455515,0.0001387933,0.00024347365,0.000008749238],"category_scores_gemma":[0.000022651957,0.000097753546,0.000031749576,0.00008891317,0.00012213789,0.0000019052922,0.000106554,0.00004910328,0.0000065488885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095915835,0.000025172369,0.0003854993,0.00001613907,0.0000038235744,1.8898162e-7,0.000027148315,0.0000075282423,0.9862912,0.000017174674,0.000010117779,0.013120088],"study_design_scores_gemma":[0.00034474864,0.00032891193,0.0077988897,0.000006647497,0.0000054961465,0.0000045262673,0.000027805329,0.00006780338,0.9843273,0.0001302295,0.0068470687,0.00011056399],"about_ca_topic_score_codex":0.0000496774,"about_ca_topic_score_gemma":0.0008067124,"teacher_disagreement_score":0.013009524,"about_ca_system_score_codex":0.000017650711,"about_ca_system_score_gemma":0.00007809984,"threshold_uncertainty_score":0.39862737},"labels":[],"label_agreement":null},{"id":"W2949667160","doi":"10.5287/ora-wx6d7brke","title":"Structure and mode of action of the TolA-TolB complex from Pseudomonas aeruginosa","year":2016,"lang":"en","type":"dissertation","venue":"Oxford University Research Archive (ORA) (University of Oxford)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; University of Oxford","keywords":"Periplasmic space; Cell envelope; Bacterial outer membrane; Biology; Inner membrane; Cell biology; Genetics; Biophysics; Membrane; Escherichia coli; Gene","score_opus":0.018329517640356938,"score_gpt":0.25876897635351115,"score_spread":0.2404394587131542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949667160","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929791,0.00007488377,0.00030951144,0.00020932945,0.00011758604,0.00035942803,0.0031518107,0.0000066651023,0.0027916653],"genre_scores_gemma":[0.99133384,0.003485781,0.0015555853,0.00000398652,0.000047062793,9.0242594e-8,0.001340465,0.000017824812,0.002215363],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840343,0.00024902532,0.00016589771,0.0004945926,0.00036746243,0.00031958803],"domain_scores_gemma":[0.9984455,0.00006265402,0.00038238076,0.0006073528,0.00039821686,0.00010389591],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001114577,0.00022336912,0.00041345585,0.00031483712,0.00030603496,0.000007392276,0.0010555617,0.000562937,0.000108230706],"category_scores_gemma":[0.000039046896,0.000212626,0.00021297202,0.00022848634,0.0010035814,0.00001552261,0.00078012573,0.0004158679,4.1058018e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017940627,0.00006105882,0.0026154534,0.00015587309,0.00024435547,0.0000049945575,0.00039998264,0.000003883477,0.9857631,0.0006481005,0.0005365307,0.0077726245],"study_design_scores_gemma":[0.0030642361,0.0013097199,0.11133521,0.00035722548,0.0002684337,0.00000831953,0.00977827,0.00015241238,0.730445,0.004079776,0.13857731,0.000624082],"about_ca_topic_score_codex":0.0012921084,"about_ca_topic_score_gemma":0.006467586,"teacher_disagreement_score":0.25531808,"about_ca_system_score_codex":0.00004069756,"about_ca_system_score_gemma":0.0003206183,"threshold_uncertainty_score":0.86706364},"labels":[],"label_agreement":null},{"id":"W2949796511","doi":"10.1016/j.jmb.2018.11.003","title":"Structural Variability of EspG Chaperones from Mycobacterial ESX-1, ESX-3, and ESX-5 Type VII Secretion Systems","year":2018,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; Environment and Climate Change Canada; Bundesministerium für Bildung und Forschung","keywords":"Chaperone (clinical); Secretion; Cytoplasm; Chemistry; Lysozyme; Crystal structure; Secretory protein; Muramidase; Crystallography; Biology; Biochemistry; Medicine","score_opus":0.006768619649879312,"score_gpt":0.2427716482238041,"score_spread":0.23600302857392477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949796511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943439,0.0011968043,0.0019338359,0.0001459207,0.0021163383,0.000136584,0.000067185065,0.000005661969,0.000053806056],"genre_scores_gemma":[0.9966155,0.0003076103,0.0017745987,0.00006912435,0.0011158239,0.0000014960941,0.00008641139,0.000019044524,0.000010342805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984272,0.0002846843,0.0006050076,0.00033186146,0.00010358455,0.00024766568],"domain_scores_gemma":[0.99851763,0.000023591576,0.0005454861,0.00034792078,0.00046853686,0.000096849595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040419254,0.00021226278,0.00044182502,0.0000882041,0.000052586467,0.000023637187,0.0002928693,0.000646905,0.000042153795],"category_scores_gemma":[0.00023538584,0.00017120368,0.00010884834,0.00009735883,0.0004791663,0.0000060797697,0.00020555472,0.0001606533,0.0000018747302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006306111,0.000027926313,0.0038521579,0.00001559604,0.00016771999,0.0000043765986,0.000026648371,0.000003453337,0.9933564,0.00042027223,0.00003689125,0.0014579574],"study_design_scores_gemma":[0.0012991183,0.0045011546,0.012154167,0.000033787743,0.00011054166,0.00020994701,0.000046121873,0.00009681597,0.9715514,0.0016557019,0.008056841,0.00028440094],"about_ca_topic_score_codex":0.000051470495,"about_ca_topic_score_gemma":0.000011922391,"teacher_disagreement_score":0.021804987,"about_ca_system_score_codex":0.000015933501,"about_ca_system_score_gemma":0.00010720485,"threshold_uncertainty_score":0.6981483},"labels":[],"label_agreement":null},{"id":"W2949934346","doi":"10.1038/ncomms15091","title":"The molecular mechanism of the type IVa pilus motors","year":2017,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McMaster University; University of Toronto","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; Government of Ontario","keywords":"Pilus; Biophysics; Chemistry; ATPase; Nucleotide; Cell biology; Protein structure; Biology; Virulence; Biochemistry; Gene; Enzyme","score_opus":0.010511484716628177,"score_gpt":0.2759447276212474,"score_spread":0.2654332429046192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949934346","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95406383,0.010624571,0.00008713636,0.026513593,0.0012416163,0.00042060588,0.00003611117,0.000015070144,0.006997491],"genre_scores_gemma":[0.99712235,0.001672755,0.0007067384,0.00017660388,0.000036959067,0.0000087183835,0.00001245723,0.000009465784,0.00025398072],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99954975,0.00006081919,0.00011050359,0.00010735521,0.0000670754,0.00010452085],"domain_scores_gemma":[0.9956795,0.000013852611,0.00015637462,0.003995164,0.00013729565,0.000017803408],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012963751,0.00007145567,0.000062617604,0.000009114066,0.00070243754,0.000036246525,0.0028290958,0.0003493509,0.00000155072],"category_scores_gemma":[0.0003221498,0.000042657724,0.000067511006,0.000044863154,0.00038874202,0.0000012587675,0.0013398643,0.00031021106,0.0000020591945],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008333798,0.0000188991,0.00022745627,0.0000011415311,0.000031036016,6.822338e-8,0.000006146379,5.16901e-7,0.90287644,0.09532655,0.0005495815,0.0009538089],"study_design_scores_gemma":[0.00012867377,0.00006583304,0.006140536,0.0000062062677,0.000020408812,0.000003913753,0.000016404634,0.00002760651,0.6660933,0.002797306,0.32461995,0.000079842765],"about_ca_topic_score_codex":0.000014517729,"about_ca_topic_score_gemma":0.00022088522,"teacher_disagreement_score":0.3240704,"about_ca_system_score_codex":0.00000475041,"about_ca_system_score_gemma":0.00004645657,"threshold_uncertainty_score":0.54026526},"labels":[],"label_agreement":null},{"id":"W2950192057","doi":"10.1088/1478-3975/9/5/056003","title":"Stuttering Min oscillations within<i>E. coli</i>bacteria: a stochastic polymerization model","year":2012,"lang":"en","type":"article","venue":"Physical Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Processivity; Stuttering; Protein filament; Fragmentation (computing); Oscillation (cell signaling); Polymerization; Chemistry; Biophysics; Physics; Biology; Nuclear magnetic resonance; Biochemistry; Polymer; Medicine; Audiology; Ecology; Gene","score_opus":0.013297669982525151,"score_gpt":0.25739085382065174,"score_spread":0.2440931838381266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2950192057","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9711417,0.00010885745,0.027789483,0.00023264722,0.00031063662,0.00015834,0.00006532694,0.00003861495,0.00015439658],"genre_scores_gemma":[0.9970955,0.0000151294735,0.0012680385,0.00026934652,0.000869307,0.000036126647,0.00029198994,0.000023012359,0.00013152817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902576,0.000048809958,0.0001868814,0.00029820684,0.000048278573,0.00039204105],"domain_scores_gemma":[0.99947274,0.000010693595,0.00009155618,0.00027925073,0.00004094998,0.00010483166],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000070580936,0.00017974702,0.00019072708,0.00004350015,0.00009300847,0.000013498491,0.0001589359,0.00024539934,0.000010082295],"category_scores_gemma":[0.000044571676,0.00016145683,0.000071428905,0.00010239596,0.00016398606,0.000005939416,0.00017908053,0.0000959504,0.000024651683],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039767157,0.00011393313,0.00022886661,0.0000036879521,0.000030539224,6.6674346e-8,0.000071003094,0.00039257875,0.9955936,0.0028299647,0.000069635535,0.000626356],"study_design_scores_gemma":[0.0006303949,0.0005655428,0.0021601138,0.000008495539,0.00006172193,0.00001527731,0.00003628926,0.010600073,0.97942257,0.0015151744,0.004437538,0.0005468155],"about_ca_topic_score_codex":0.000007348305,"about_ca_topic_score_gemma":0.0000040882537,"teacher_disagreement_score":0.026521444,"about_ca_system_score_codex":0.000011454653,"about_ca_system_score_gemma":0.000037960617,"threshold_uncertainty_score":0.65840185},"labels":[],"label_agreement":null},{"id":"W2951276752","doi":"10.1074/jbc.ra119.007757","title":"The heme-sensitive regulator SbnI has a bifunctional role in staphyloferrin B production by Staphylococcus aureus","year":2019,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of British Columbia","funders":"SLAC National Accelerator Laboratory; Biological and Environmental Research; National Research Council Canada; National Institute of General Medical Sciences; Western Economic Diversification Canada; Basic Energy Sciences; Canadian Light Source; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Office of Science; Government of Canada; National Institutes of Health; University of Saskatchewan; U.S. Department of Energy","keywords":"Heme; Chemistry; Serine; Biochemistry; Gene cluster; Bifunctional; Stereochemistry; Biosynthesis; Gene product; Staphylococcus aureus; Phosphofructokinase 2; Gene; Biology; Enzyme; Gene expression; Bacteria; Genetics","score_opus":0.008373527939310527,"score_gpt":0.20764396483229577,"score_spread":0.19927043689298524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2951276752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99680203,0.001323356,0.000018596078,0.0011987743,0.00032057142,0.00012683713,0.000020228932,0.0000057928905,0.00018380657],"genre_scores_gemma":[0.9983112,0.00043826835,0.00011974163,0.00008152512,0.0005224502,0.0000048530915,0.000034038207,0.000010343038,0.00047755058],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987971,0.00005990781,0.00042032116,0.0002971724,0.00015334871,0.00027213147],"domain_scores_gemma":[0.99916005,0.000024810768,0.00030426975,0.00025858375,0.00017900536,0.00007326131],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000389197,0.00017214651,0.00022309537,0.000023722816,0.00007643716,0.000036636502,0.00027292492,0.0004495441,0.00003075154],"category_scores_gemma":[0.00019700397,0.00010733704,0.00013879461,0.00011889096,0.00023616414,0.000004159459,0.000118078504,0.00033982153,0.0000051524116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000530189,0.00009505534,0.0038726053,0.000006489873,0.000049689254,0.0000034161305,0.0000066807897,0.00002176867,0.992209,0.0000075786947,0.0020460342,0.0011514707],"study_design_scores_gemma":[0.00045364792,0.0004560126,0.005895923,0.0000134219335,0.0000059256577,0.000048237278,0.00016440138,0.000007626784,0.9085292,0.00016290374,0.08412027,0.00014238137],"about_ca_topic_score_codex":0.0000040051737,"about_ca_topic_score_gemma":0.000004487828,"teacher_disagreement_score":0.08367978,"about_ca_system_score_codex":0.000040696028,"about_ca_system_score_gemma":0.000105544765,"threshold_uncertainty_score":0.43770772},"labels":[],"label_agreement":null},{"id":"W2953010236","doi":"10.1128/ecosalplus.esp-0003-2019","title":"Plasmid Localization and Partition in <i>Enterobacteriaceae</i>","year":2019,"lang":"en","type":"review","venue":"EcoSal Plus","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Agence Nationale de la Recherche","keywords":"Plasmid; Replicon; Biology; Partition (number theory); Enterobacteriaceae; Nucleoid; Genetics; Computational biology; Escherichia coli; Gene; Mathematics","score_opus":0.023089477986064783,"score_gpt":0.2771583679101696,"score_spread":0.2540688899241048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953010236","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0052854507,0.9932804,0.00009413596,0.000025172421,0.00059287896,0.0004720568,0.000066018205,0.000012775636,0.00017108412],"genre_scores_gemma":[0.0012308572,0.99657637,0.000041477306,0.0000668224,0.00019322567,0.00003351577,0.0016609563,0.000035631776,0.00016112607],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989025,0.0000661237,0.0003207098,0.000429433,0.000047846675,0.00023336026],"domain_scores_gemma":[0.9995736,0.000004977122,0.000100651174,0.0002653858,0.000016020997,0.000039366074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010102045,0.00024177278,0.0005446421,0.00008827775,0.000022941818,0.000033592853,0.00013254443,0.00071452046,0.00002300455],"category_scores_gemma":[0.0000138694995,0.00019350945,0.00009003857,0.00006922887,0.000045939887,0.0000022913905,0.00020542962,0.0001374234,0.000066399996],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001308589,0.00014703277,0.000105400744,0.011803018,0.00022173235,0.000019832736,0.00003294077,0.00003779647,0.011651077,0.00020046889,0.004053342,0.9715965],"study_design_scores_gemma":[0.00027876705,0.000144627,0.000005721561,0.00059251906,0.000059064216,0.000029926308,0.000001850585,0.000020472537,0.0008666576,0.000016467771,0.9977499,0.00023397528],"about_ca_topic_score_codex":0.000006076653,"about_ca_topic_score_gemma":0.00007742055,"teacher_disagreement_score":0.99369663,"about_ca_system_score_codex":0.000029935865,"about_ca_system_score_gemma":0.00007546151,"threshold_uncertainty_score":0.78910863},"labels":[],"label_agreement":null},{"id":"W2953380509","doi":"10.1128/iai.00573-18","title":"Evolution and Sequence Diversity of FhuA in Salmonella and Escherichia","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Escherichia coli; Enterobacteriaceae; Microbiology; Phylogenetic tree; Salmonella; Genetics; Horizontal gene transfer; Pathogenicity island; Phylogenetics; Peptide sequence; Serotype; Gene; Sequence analysis; Colicin; Bacteria","score_opus":0.013161030611069787,"score_gpt":0.2347297465195096,"score_spread":0.2215687159084398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953380509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99937564,0.00022791344,0.00010586953,0.00002617727,0.000059904254,0.00004462368,0.0000032184284,0.000003937746,0.00015272608],"genre_scores_gemma":[0.99892485,0.0009193803,0.00009147038,0.000019808824,0.000023490493,6.603648e-7,0.000004111325,0.0000020097261,0.0000142457875],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99972284,0.000036272748,0.000065273176,0.00009810589,0.00001806199,0.000059438556],"domain_scores_gemma":[0.999834,0.0000028005988,0.000031472206,0.00008043676,0.000033032502,0.00001827237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009943063,0.00004774609,0.000059839083,0.00003139304,0.000085442174,0.000005444816,0.000023270268,0.00012412283,0.000003029532],"category_scores_gemma":[0.000023978215,0.000047006582,0.000007476158,0.000054134263,0.00025043756,0.0000030289239,0.0002300018,0.000055927485,2.86802e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003049191,0.000015466816,0.1920487,0.0000073598517,0.0000044291387,8.019163e-8,0.000040200273,1.3038402e-7,0.80519056,0.00006060776,0.0000050132,0.0025969585],"study_design_scores_gemma":[0.00027187722,0.00041049573,0.8176741,0.0000065155755,0.000004976005,0.0000107133,0.000031328284,0.000043820015,0.18037903,0.00024720177,0.0008587144,0.0000611927],"about_ca_topic_score_codex":0.0012121302,"about_ca_topic_score_gemma":0.00042166119,"teacher_disagreement_score":0.62562543,"about_ca_system_score_codex":0.000004532744,"about_ca_system_score_gemma":0.000008464297,"threshold_uncertainty_score":0.19168729},"labels":[],"label_agreement":null},{"id":"W2954362551","doi":"10.1128/mbio.01226-19","title":"The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes","year":2019,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Army Research Office; Institute of Genetics; National Institute of General Medical Sciences; Multidisciplinary University Research Initiative; U.S. Army; National Institutes of Health","keywords":"Chromosome; Genetics; Escherichia coli; Genome; Biology; Base (topology); Mutation rate; Base pair; Substitution (logic); Mutation; Circular bacterial chromosome; Computational biology; DNA; Gene; Computer science; Mathematics","score_opus":0.017523099039891327,"score_gpt":0.238459733366668,"score_spread":0.22093663432677668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2954362551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973957,0.00069940614,0.00011682852,0.00096971623,0.00045638476,0.00025711986,0.000061172104,0.000012329564,0.000031347085],"genre_scores_gemma":[0.9990958,0.00020215042,0.000056362176,0.00016784869,0.0001435492,0.000015646065,0.00005713983,0.000013601748,0.00024789976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991208,0.000062847714,0.00020111665,0.0002463478,0.00009802543,0.00027088835],"domain_scores_gemma":[0.99923927,0.00005149676,0.000105368505,0.00049038616,0.00008121954,0.00003226212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020800825,0.00013157316,0.00013574665,0.00001400984,0.00018945815,0.000054639982,0.00027999457,0.00024954023,0.000015109097],"category_scores_gemma":[0.00010232136,0.00007611935,0.000085261,0.00014829014,0.0003717104,0.0000021142234,0.00020005806,0.000120386045,0.000026359783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004806942,0.000044273645,0.01343124,0.000010376417,0.000044920405,8.601941e-7,0.000031261377,0.0000054478305,0.98376554,0.000051065585,0.00042409444,0.002142828],"study_design_scores_gemma":[0.0004036081,0.00026824538,0.027729876,0.000006673084,0.000010327491,0.000004967949,0.00009247142,0.00020456256,0.8999806,0.000017402923,0.07116779,0.00011348353],"about_ca_topic_score_codex":0.0001301257,"about_ca_topic_score_gemma":0.00023562333,"teacher_disagreement_score":0.083784975,"about_ca_system_score_codex":0.000011081544,"about_ca_system_score_gemma":0.000051635565,"threshold_uncertainty_score":0.3104057},"labels":[],"label_agreement":null},{"id":"W2963684100","doi":"10.1101/714758","title":"Teichoic acids anchor distinct cell wall lamellae in an apically growing bacterium","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; Universiteit Leiden; European Commission","keywords":"Cell wall; Teichoic acid; Peptidoglycan; Glycan; Secondary cell wall; Bacterial cell structure; Extracellular; Middle lamella; Biophysics; Bacteria; Lamella (surface anatomy); Biology; Biochemistry; Anatomy; Glycoprotein","score_opus":0.007744924924670362,"score_gpt":0.2075999296127816,"score_spread":0.19985500468811124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2963684100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996251,0.0007851382,0.00026964952,0.00024739452,0.0013873626,0.00072429795,0.00019873091,0.00011691674,0.00001953501],"genre_scores_gemma":[0.9953711,0.0003732831,0.0026704369,0.00040637897,0.0008495568,0.000110520814,0.000012497236,0.00018388026,0.000022353308],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99627614,0.00017687104,0.0007095499,0.001731274,0.00023938077,0.0008668096],"domain_scores_gemma":[0.9969675,0.000014504966,0.00036874716,0.0021044805,0.00027289343,0.00027187137],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00042701216,0.00076189823,0.0006935142,0.00023630192,0.00008022734,0.00016953376,0.0011538872,0.0020644797,0.000038654158],"category_scores_gemma":[0.000088873574,0.0008161865,0.00021188291,0.00027182206,0.00016262147,0.000017223321,0.0012095566,0.0009252212,0.000060815364],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000097993034,0.00022310916,0.029796394,0.00021538553,0.000048954666,0.000025791593,0.0000038848375,0.00004005909,0.9694615,0.000021375172,0.000059785492,0.000005776591],"study_design_scores_gemma":[0.00071672245,0.00035760284,0.1823504,0.00011370352,0.00004783025,3.7342616e-8,0.0000016797056,0.00011073194,0.7908434,0.0000012211859,0.024492923,0.00096370385],"about_ca_topic_score_codex":0.000044034357,"about_ca_topic_score_gemma":0.00002503655,"teacher_disagreement_score":0.17861804,"about_ca_system_score_codex":0.00011457852,"about_ca_system_score_gemma":0.00048718537,"threshold_uncertainty_score":0.9994289},"labels":[],"label_agreement":null},{"id":"W2964214702","doi":"10.1371/journal.pone.0218520","title":"DNA segregation under Par protein control","year":2019,"lang":"fr","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Compute Canada","keywords":"Nucleoid; Plasmid; DNA; Substrate (aquarium); Biophysics; Dynamics (music); Biology; Physics; Topology (electrical circuits); Genetics; Escherichia coli; Mathematics","score_opus":0.012596288979100846,"score_gpt":0.19030824811716257,"score_spread":0.17771195913806173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2964214702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98550993,0.0038394616,0.00017440964,0.007933424,0.00033056398,0.0009953752,0.00008934229,0.00002351754,0.0011040028],"genre_scores_gemma":[0.98156685,0.00045769493,0.0013917449,0.0005677787,0.00047752145,0.00004456252,0.00012584061,0.000039791714,0.015328245],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985903,0.00009633659,0.0002654154,0.00047048103,0.00016604055,0.00041143142],"domain_scores_gemma":[0.9990971,0.0000077276845,0.00013687614,0.00052621897,0.00014106663,0.00009099029],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013818855,0.00022805903,0.0002942986,0.0000406499,0.000052513733,0.00004194834,0.00021587918,0.00084878,0.00044516486],"category_scores_gemma":[0.000038673606,0.00024096336,0.00008761416,0.00009483161,0.00014938242,0.0000046558143,0.000106971806,0.00020040022,0.0005781357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012241112,0.0008477278,0.0009557021,0.0001668711,0.00044402265,0.0000016393477,0.000008152767,0.0000069837192,0.9932053,0.0019476891,0.00015298983,0.0021405274],"study_design_scores_gemma":[0.0014214108,0.0010824495,0.0011779763,0.00016758782,0.0001490742,0.0000037397729,0.000015779236,0.0002037492,0.98092955,0.00090730615,0.013620601,0.00032077968],"about_ca_topic_score_codex":0.00002217633,"about_ca_topic_score_gemma":0.000027640874,"teacher_disagreement_score":0.014224242,"about_ca_system_score_codex":0.000029511859,"about_ca_system_score_gemma":0.000103296974,"threshold_uncertainty_score":0.98262006},"labels":[],"label_agreement":null},{"id":"W2966837801","doi":"10.1016/j.bbagen.2019.07.014","title":"Streptomyces IHF uses multiple interfaces to bind DNA","year":2019,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - General Subjects","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; McMaster University","keywords":"Nucleoid; Streptomyces coelicolor; DNA; Biology; Escherichia coli; Binding site; DNA supercoil; DNA-binding protein; Biophysics; Bacillus subtilis; DNA binding site; Cell biology; Crystallography; DNA replication; Biochemistry; Chemistry; Genetics; Promoter; Streptomyces; Transcription factor; Bacteria; Gene","score_opus":0.008121015665376333,"score_gpt":0.2353464044608285,"score_spread":0.22722538879545218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966837801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99636567,0.00013739862,0.0000123522295,0.0013554759,0.00086274184,0.000629465,0.00014657743,0.00008794364,0.0004023928],"genre_scores_gemma":[0.995311,0.00024221615,0.0011219875,0.0010710412,0.000662373,0.00004364442,0.00029709056,0.000082284416,0.0011683598],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974576,0.00011356144,0.00040079522,0.00109698,0.00023757324,0.0006934677],"domain_scores_gemma":[0.9984944,0.000024818812,0.00019112226,0.0009500421,0.00011292989,0.00022669882],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012813056,0.00051850174,0.0004322266,0.00015881726,0.00010635213,0.00014292431,0.00077521947,0.00049243873,0.00006660039],"category_scores_gemma":[0.00006500711,0.0004642085,0.00021039537,0.00033063986,0.00014353973,0.000014304652,0.0006916729,0.00020904497,0.00027073314],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002637116,0.00016402737,0.00024683645,0.000029349772,0.0001331331,0.0000020781215,0.000077331024,0.000014799489,0.99628526,0.000045206223,0.0020582476,0.0006800093],"study_design_scores_gemma":[0.00072241295,0.001215336,0.0072375904,0.000031917963,0.000030971645,0.000008464614,0.000054924163,0.000044245007,0.9797231,0.000033320055,0.010245899,0.00065183686],"about_ca_topic_score_codex":0.0001023668,"about_ca_topic_score_gemma":0.000118405354,"teacher_disagreement_score":0.016562188,"about_ca_system_score_codex":0.000029231045,"about_ca_system_score_gemma":0.00012461939,"threshold_uncertainty_score":0.99978095},"labels":[],"label_agreement":null},{"id":"W2969376443","doi":"10.1107/s2059798319010866","title":"Structures of the substrate-binding protein YfeA in apo and zinc-reconstituted holo forms","year":2019,"lang":"en","type":"article","venue":"Acta Crystallographica Section D Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Light Source (Canada)","funders":"National Cancer Institute; National Research Council Canada; National Institute of General Medical Sciences; Western Economic Diversification Canada; Canadian Light Source; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Office of Science; National Institutes of Health; University of Saskatchewan; Argonne National Laboratory; U.S. Department of Energy","keywords":"Substrate (aquarium); Chemistry; Crystallography; Protein structure; Plasma protein binding; Binding site; Metal; Cluster (spacecraft); Biophysics; Stereochemistry; Biochemistry; Biology","score_opus":0.005714386898741253,"score_gpt":0.2136406370087794,"score_spread":0.20792625011003812,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969376443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983983,0.00011425135,0.0000043379123,0.00023070967,0.0005200973,0.00053439057,0.000044935263,0.000014749033,0.00013820348],"genre_scores_gemma":[0.9995176,0.00008125717,0.00015213307,0.00003735224,0.00006287515,0.000014119042,0.00008525785,0.0000124849375,0.000036912377],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998786,0.00009055605,0.00032607146,0.00043821405,0.000058395577,0.0003007906],"domain_scores_gemma":[0.9993421,0.000010779263,0.00020528876,0.00034951014,0.00005248022,0.00003988453],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011335348,0.00021064948,0.00025316377,0.00016343617,0.00008146358,0.000017631908,0.0002770428,0.0006440707,0.000032971475],"category_scores_gemma":[0.000039156334,0.00014142922,0.00009743016,0.00031495042,0.0004874263,0.000008422066,0.00019853207,0.00025765074,1.2664214e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010166934,0.0000060222715,0.09430903,0.00001899321,0.000040352,3.022294e-7,0.000010845455,0.0000033060567,0.904254,0.0008824535,0.000004717578,0.00036828095],"study_design_scores_gemma":[0.0015551839,0.0009612831,0.3745437,0.000029173398,0.000022163298,0.00015588226,0.0001382069,0.000020502117,0.6094326,0.0052419435,0.007440134,0.00045923676],"about_ca_topic_score_codex":0.00007816463,"about_ca_topic_score_gemma":0.0004420196,"teacher_disagreement_score":0.2948214,"about_ca_system_score_codex":0.0000104339315,"about_ca_system_score_gemma":0.000043315966,"threshold_uncertainty_score":0.5767316},"labels":[],"label_agreement":null},{"id":"W2969781215","doi":"10.1101/081455","title":"Phylogenetic Characterization of the Energy-taxis Receptor Aer in <i>Pseudomonas</i> and Phenotypic Characterization in <i>P. pseudoalcaligenes</i> KF707","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Chemotaxis; Pseudomonas putida; Phylogenetic tree; Genetics; Phylogenetics; Receptor; Bacteria; Gene","score_opus":0.005530983979523268,"score_gpt":0.18385930634185213,"score_spread":0.17832832236232887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969781215","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99640495,0.00044485458,0.00074072345,0.00035537666,0.0008436887,0.0005298975,0.000654256,0.000023435665,0.0000028489158],"genre_scores_gemma":[0.9960354,0.002874247,0.00022820976,0.00024748026,0.0003510507,0.00014852169,0.000014615526,0.00008820934,0.000012273409],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99749684,0.00022657034,0.0007070974,0.00094151957,0.00018940955,0.00043857982],"domain_scores_gemma":[0.99811625,0.000011165982,0.0005542203,0.0010410075,0.00018934831,0.000088015804],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00031630072,0.00046810205,0.000493736,0.0002156768,0.000055026885,0.000046716057,0.0005481551,0.0011608264,0.000011332102],"category_scores_gemma":[0.000074289164,0.00039566692,0.00010360748,0.0003883278,0.00023075382,0.000009738302,0.00079336565,0.00027580847,0.0000025553898],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007701942,0.00010419686,0.025355129,0.0001035074,0.000033589058,0.0000015957726,0.000004446623,0.0000019518352,0.9741414,0.00011058635,0.000007803038,0.00005874727],"study_design_scores_gemma":[0.00045660225,0.000055240882,0.24477617,0.00020328118,0.00001793189,3.5557523e-8,4.8838757e-7,0.000016340997,0.7501912,0.0000037125876,0.0039305342,0.0003484532],"about_ca_topic_score_codex":0.000027656179,"about_ca_topic_score_gemma":0.000020253647,"teacher_disagreement_score":0.22395022,"about_ca_system_score_codex":0.00006449836,"about_ca_system_score_gemma":0.00026720314,"threshold_uncertainty_score":0.9998495},"labels":[],"label_agreement":null},{"id":"W2969899249","doi":"10.1016/j.dnarep.2019.102693","title":"R-loop-dependent replication and genomic instability in bacteria","year":2019,"lang":"en","type":"review","venue":"DNA repair","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; DnaA; Pre-replication complex; Replication factor C; DNA replication; Control of chromosome duplication; Origin recognition complex; Genetics; Eukaryotic DNA replication; Semiconservative replication; Origin of replication; Genome instability; Ter protein; RNase H; Prokaryotic DNA replication; RNase P; Cell biology; DNA; RNA; Gene; DNA damage","score_opus":0.02524440409248118,"score_gpt":0.28629227507269894,"score_spread":0.26104787098021776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969899249","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.15367162,0.8450823,0.0000023031105,0.000025139396,0.00023736451,0.00075323123,0.00007077952,0.000031765965,0.00012552094],"genre_scores_gemma":[0.0015376745,0.9969986,0.00025928728,0.000038290083,0.0001194993,0.00008118539,0.00056037767,0.000041618343,0.00036343862],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99806947,0.0001281565,0.00050056446,0.0010036236,0.000059825295,0.00023834773],"domain_scores_gemma":[0.998294,0.000010303219,0.00021660005,0.0014023025,0.00002693533,0.000049879913],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00036978596,0.00029729013,0.0007124432,0.00008951131,0.000024250445,0.00002216671,0.00024707487,0.00095690624,0.000016959293],"category_scores_gemma":[0.00006631599,0.0002650044,0.0002053717,0.00008316656,0.00007751698,0.0000017612208,0.0003958442,0.00020612006,0.000027312937],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031267504,0.000091575545,0.00024942125,0.004396648,0.000111598645,0.0000042080246,0.0000075154403,1.5825157e-7,0.08897131,0.000050865234,0.0002000199,0.9058854],"study_design_scores_gemma":[0.00017968306,0.00014199382,0.00056588824,0.00030236645,0.00007738239,0.00003685885,0.0000033253398,0.0000020421598,0.0013396428,0.000011784704,0.99704343,0.00029558816],"about_ca_topic_score_codex":0.000022105945,"about_ca_topic_score_gemma":0.000059511327,"teacher_disagreement_score":0.9968434,"about_ca_system_score_codex":0.00005451279,"about_ca_system_score_gemma":0.00016764484,"threshold_uncertainty_score":0.9999802},"labels":[],"label_agreement":null},{"id":"W2971641477","doi":"10.1101/756429","title":"ArdC protein overpasses the recipient <i>hsdRMS</i> restriction system broadening conjugation host range","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centro Nacional de Biotecnología; Ministerio de Asuntos Económicos y Transformación Digital, Gobierno de España; University of British Columbia; Ministerio de Educación, Cultura y Deporte","keywords":"Plasmid; Pseudomonas putida; Bacterial conjugation; Escherichia coli; Biology; Function (biology); Cell biology; Chemistry; Genetics; Bacteria; DNA; Gene","score_opus":0.008267704289460116,"score_gpt":0.19748080168429336,"score_spread":0.18921309739483325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2971641477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99172485,0.0016326748,0.0014312984,0.00044664048,0.0024966015,0.0017754983,0.00028395848,0.00017831412,0.00003018435],"genre_scores_gemma":[0.9964096,0.00088537665,0.000858149,0.00013095289,0.0012148278,0.00036128896,0.0000051552897,0.00011383787,0.00002081463],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99723285,0.00023197246,0.0005720185,0.0011185193,0.00032599756,0.0005186455],"domain_scores_gemma":[0.99708635,0.00001787587,0.0006495884,0.0017023826,0.0004281087,0.00011567595],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005626438,0.00054273853,0.00044368734,0.00013673917,0.00022376141,0.0002468365,0.00071592175,0.0013969962,0.000006343493],"category_scores_gemma":[0.00016130198,0.0004678756,0.00019720882,0.00028362154,0.00014966176,0.0000089185,0.00078713545,0.00068112044,0.00004746835],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095404015,0.000047252703,0.0015054169,0.0002564881,0.00013045651,0.0000064789497,0.0000022129625,0.000045820074,0.996888,0.00048385578,0.0005356936,0.0000029100595],"study_design_scores_gemma":[0.00055901794,0.00022507958,0.023711989,0.00042025602,0.00010693142,1.00519316e-7,0.000009407673,0.00010897688,0.93712205,0.0000010601644,0.037087172,0.0006479809],"about_ca_topic_score_codex":0.0000778466,"about_ca_topic_score_gemma":0.000005578403,"teacher_disagreement_score":0.059765983,"about_ca_system_score_codex":0.00017731462,"about_ca_system_score_gemma":0.00042429185,"threshold_uncertainty_score":0.9998994},"labels":[],"label_agreement":null},{"id":"W2971889904","doi":"10.1128/jb.00469-19","title":"Growth Phase-Dependent Chromosome Condensation and Heat-Stable Nucleoid-Structuring Protein Redistribution in Escherichia coli under Osmotic Stress","year":2019,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Research, Innovation and Science; Government of Canada","keywords":"Nucleoid; Biology; Escherichia coli; Bacillus subtilis; Virulence; Chromosome; Gene; Bacteria; Cell biology; Premature chromosome condensation; Genetics; DNA condensation; Chromosome segregation; DNA; Circular bacterial chromosome","score_opus":0.006839803137179233,"score_gpt":0.2255532581807098,"score_spread":0.21871345504353054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2971889904","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841285,0.00031226102,0.00016445211,0.00040518556,0.00038733878,0.00024505708,0.000035331697,0.000005277699,0.00003224942],"genre_scores_gemma":[0.99915844,0.00014713267,0.0003040417,0.000087366636,0.00019247927,0.000003890766,0.00005415172,0.000016934226,0.000035545658],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988251,0.00011379493,0.00046574586,0.00024972815,0.00008657093,0.0002591139],"domain_scores_gemma":[0.9993625,0.000009830474,0.00026511564,0.00016664743,0.00012623351,0.000069661575],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020507161,0.0001621801,0.0003248069,0.00010347085,0.00003426279,0.000029912862,0.00016062771,0.00039990892,0.00004554949],"category_scores_gemma":[0.000050117585,0.00014645957,0.00005286757,0.000075987205,0.00009918033,0.000013611796,0.000109136025,0.00025063576,0.000002931811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003258155,0.00007672236,0.0020316388,0.000034748642,0.000044293516,0.000009191421,0.000019264302,0.000034558016,0.9969925,0.0002431309,0.000008809259,0.00017931263],"study_design_scores_gemma":[0.0030241811,0.0020373217,0.025415976,0.000059458962,0.000020663456,0.00019170684,0.00012517192,0.00008075357,0.96755356,0.0007090075,0.00057786185,0.00020436833],"about_ca_topic_score_codex":0.000021174805,"about_ca_topic_score_gemma":0.000019157353,"teacher_disagreement_score":0.029438986,"about_ca_system_score_codex":0.00005407876,"about_ca_system_score_gemma":0.00009891037,"threshold_uncertainty_score":0.59724474},"labels":[],"label_agreement":null},{"id":"W2973031262","doi":"10.1128/jb.00430-19","title":"Induction of <i>Rhodobacter capsulatus</i> Gene Transfer Agent Gene Expression Is a Bistable Stochastic Process Repressed by an Extracellular Calcium-Binding RTX Protein Homologue","year":2019,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland; University of British Columbia","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Rhodobacter; Biology; Horizontal gene transfer; Gene; Mutant; Extracellular; Genetics; Regulation of gene expression; Gene expression; Point mutation; Genome; Cell biology","score_opus":0.013630348587122912,"score_gpt":0.2421851577465942,"score_spread":0.22855480915947127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2973031262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917783,0.0007541996,0.0061522024,0.00012845834,0.00058484636,0.0004568012,0.00012661553,0.000009294157,0.000009280926],"genre_scores_gemma":[0.99771076,0.00011146961,0.0013335833,0.00006822534,0.0002822137,0.000017036438,0.0001997438,0.000046841767,0.00023012949],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997758,0.00021311604,0.0008981257,0.0005200576,0.00018598537,0.00042472582],"domain_scores_gemma":[0.9983897,0.000009891988,0.00058384845,0.00053261896,0.00032962146,0.00015430214],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004369345,0.000311367,0.0006195833,0.0001695921,0.00006386505,0.000025771584,0.00044256108,0.0008523685,0.00013210712],"category_scores_gemma":[0.00004277474,0.000264223,0.00018619341,0.00013797542,0.00016347776,0.000029240164,0.00009201667,0.0003763557,0.000005237343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008369342,0.00024512585,0.00036571996,0.000060590806,0.00010802504,0.000012266264,0.00013234907,0.00014348564,0.9975844,0.0000033431645,0.00009745191,0.00041032044],"study_design_scores_gemma":[0.0014167572,0.0024740265,0.0006968087,0.00006668394,0.000056482244,0.00033992674,0.00007591071,0.000027992535,0.9923152,0.000038889983,0.0022059716,0.00028538282],"about_ca_topic_score_codex":0.000020387024,"about_ca_topic_score_gemma":0.0000024811352,"teacher_disagreement_score":0.005932455,"about_ca_system_score_codex":0.000033497367,"about_ca_system_score_gemma":0.00016895734,"threshold_uncertainty_score":0.999981},"labels":[],"label_agreement":null},{"id":"W2974256862","doi":"10.1128/jb.00391-19","title":"Characterization of the Chromosome Dimer Resolution Site in Caulobacter crescentus","year":2019,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Caulobacter crescentus; Biology; Genetics; Cell division; Chromosome; Circular bacterial chromosome; Chromosome segregation; Resolution (logic); Population; Gene; Cell; Cell biology; Bacterial protein; DNA replication","score_opus":0.005029276426798211,"score_gpt":0.20625081207015064,"score_spread":0.20122153564335243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2974256862","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981845,0.00010487304,0.000021117428,0.00044466456,0.0010379985,0.00014035375,0.000018232968,0.0000015554688,0.000046684905],"genre_scores_gemma":[0.9991235,0.00027371707,0.00007864062,0.00014866074,0.00021096507,0.0000013425935,0.0000314931,0.000011564869,0.00012009211],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989448,0.00013813088,0.0005014893,0.00015179055,0.000080867794,0.00018291286],"domain_scores_gemma":[0.9990252,0.000007055445,0.0005319276,0.00028173238,0.00012380953,0.000030228635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002208717,0.00011307147,0.000266132,0.00009320164,0.000016572203,0.0000070968454,0.00025948134,0.00033030077,0.000056452147],"category_scores_gemma":[0.000044220407,0.000078947756,0.00012079344,0.00012195118,0.0000984225,0.0000072102407,0.00014183192,0.00018544433,0.0000069318958],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021627288,0.000050461673,0.05099873,0.000012125049,0.000025597732,0.000001358591,0.000025444937,0.000008888924,0.9483044,0.000021583879,0.000023407518,0.0003117094],"study_design_scores_gemma":[0.0006272238,0.0005303074,0.47652423,0.00003656616,0.000011817351,0.00008972971,0.0000074470045,0.000012304986,0.5069201,0.000017040986,0.015140454,0.000082770704],"about_ca_topic_score_codex":0.000010336731,"about_ca_topic_score_gemma":0.000024755731,"teacher_disagreement_score":0.44138432,"about_ca_system_score_codex":0.00002242211,"about_ca_system_score_gemma":0.00008413635,"threshold_uncertainty_score":0.32193962},"labels":[],"label_agreement":null},{"id":"W2975468766","doi":"10.2210/pdb2k8e/pdb","title":"Solution NMR Structure of protein of unknown function yegP from E. coli. Ontario Center for Structural Proteomics target EC0640_1_123 Northeast Structural Genomics Consortium Target ET102.","year":2008,"lang":"en","type":"paratext","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Structural genomics; Computational biology; Center (category theory); Proteomics; Function (biology); Genomics; Biology; Chemistry; Genetics; Protein structure; Crystallography; Genome; Gene; Biochemistry","score_opus":0.007628829354888926,"score_gpt":0.20810732494258022,"score_spread":0.2004784955876913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2975468766","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97565,0.0010921113,0.0030604827,0.000057444577,0.0022491126,0.0030841734,0.014522256,0.000016945292,0.000267471],"genre_scores_gemma":[0.9234887,0.00024019997,0.034091756,0.000073296746,0.0011784259,0.00008480499,0.0335461,0.00012998602,0.0071667293],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967484,0.000091045586,0.0011943472,0.0010616955,0.0002560289,0.00064851413],"domain_scores_gemma":[0.99714255,0.000010628145,0.0012544726,0.00084625004,0.0006139361,0.00013216173],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00007099109,0.0007940955,0.0010951253,0.0001597272,0.00016761654,0.000033362947,0.0005914593,0.0023660422,0.00090891484],"category_scores_gemma":[0.00002839665,0.00070891925,0.00043379705,0.00011284831,0.0004712847,0.000010981115,0.0003400729,0.0005427727,0.000009045569],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001906551,0.00004602166,0.0007030639,0.00020523666,0.0005306073,6.60804e-7,0.00006868693,0.00038783977,0.9896023,0.000052503125,0.006173523,0.00032297146],"study_design_scores_gemma":[0.002031994,0.00133826,0.0015236672,0.00005912225,0.000111499765,0.000019835512,0.000024486682,0.00027099563,0.8408998,0.00046011174,0.15250205,0.00075815304],"about_ca_topic_score_codex":0.004084469,"about_ca_topic_score_gemma":0.0129032545,"teacher_disagreement_score":0.1487025,"about_ca_system_score_codex":0.000172282,"about_ca_system_score_gemma":0.0010965953,"threshold_uncertainty_score":0.9995362},"labels":[],"label_agreement":null},{"id":"W2975822508","doi":"10.1101/780494","title":"A processive rotary mechanism couples substrate unfolding and proteolysis in the ClpXP degradation machinery","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"AAA proteins; Proteolysis; Protease; Biophysics; Serine protease; Biology; Proteases; Substrate (aquarium); Crystallography; Cell biology; Chemistry; Biochemistry; Enzyme; ATPase","score_opus":0.00856802812359616,"score_gpt":0.20460111260502714,"score_spread":0.19603308448143097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2975822508","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99527127,0.0019818565,0.00071363023,0.00038639526,0.00030051326,0.0011919611,0.00011113652,0.00003989067,0.0000033664312],"genre_scores_gemma":[0.996209,0.0013863995,0.0015871031,0.000200763,0.00024566113,0.0003008939,0.0000056194745,0.000060365383,0.0000041856233],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99800926,0.00013521337,0.00038945896,0.0008904656,0.00019029962,0.0003852921],"domain_scores_gemma":[0.9985718,0.000015858588,0.00033751977,0.0008438393,0.00016516686,0.0000658086],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005567964,0.00042851822,0.0003619513,0.00015976866,0.00009957289,0.00016919515,0.00054375204,0.00091379066,0.0000037481566],"category_scores_gemma":[0.00009544878,0.0003567048,0.000084460095,0.00024518988,0.00010651034,0.000006871793,0.00047922583,0.0005394044,0.000003988609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044499877,0.00005581705,0.0036087534,0.00020041912,0.000072445495,0.000012358503,0.0000071394907,0.000036373294,0.99562305,0.00030902828,0.000017500244,0.000012640002],"study_design_scores_gemma":[0.00046567337,0.00015505457,0.027726943,0.00015574106,0.00008389667,1.6669031e-7,0.000013981915,0.00056469766,0.9691801,0.000022201666,0.0010570524,0.00057446695],"about_ca_topic_score_codex":0.00006911245,"about_ca_topic_score_gemma":0.000035944657,"teacher_disagreement_score":0.026442902,"about_ca_system_score_codex":0.00003473606,"about_ca_system_score_gemma":0.00030204921,"threshold_uncertainty_score":0.9998885},"labels":[],"label_agreement":null},{"id":"W2977241828","doi":"10.1186/s13568-019-0881-7","title":"NfiS, a species-specific regulatory noncoding RNA of Pseudomonas stutzeri, enhances oxidative stress tolerance in Escherichia coli","year":2019,"lang":"en","type":"article","venue":"AMB Express","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Agricultural Science and Technology Innovation Program; National Key Research and Development Program of China; Jiangxi Normal University; National Natural Science Foundation of China","keywords":"Biology; Pseudomonas stutzeri; Escherichia coli; Oxidative stress; Gene; Gene expression; Regulation of gene expression; Cell biology; Genetics; Biochemistry; Bacteria","score_opus":0.009350542954402493,"score_gpt":0.22350853015027275,"score_spread":0.21415798719587026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2977241828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99574125,0.0012780883,0.00012674356,0.00005083338,0.00042124433,0.0003229157,0.000057513298,0.00001214514,0.0019892908],"genre_scores_gemma":[0.9967809,0.0009562278,0.0012155767,0.000051784198,0.00017946235,0.000025453623,0.00004544688,0.0000237091,0.00072144513],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862486,0.00006829784,0.0003517361,0.0004937988,0.00015024921,0.00031108476],"domain_scores_gemma":[0.99908715,0.000016452186,0.00019941264,0.0005685171,0.000080666025,0.000047825586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013624704,0.0002103279,0.00033440854,0.00006571278,0.00003054987,0.000020419566,0.00040401545,0.00029821898,0.00007738647],"category_scores_gemma":[0.000015255781,0.00020585292,0.00008002577,0.00015808381,0.00018263808,0.0000080411,0.0002137937,0.00014896103,0.000010514965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001785055,0.00010298537,0.002260153,0.000034968394,0.00002756694,0.0000026111873,0.000113025155,0.000069664195,0.9960008,0.00028942272,0.00029667132,0.0006235823],"study_design_scores_gemma":[0.0006591086,0.00023834792,0.015508539,0.0000777931,0.0000043511,0.0000012169976,0.00024265975,0.000019680147,0.96030456,0.000027678616,0.022677874,0.0002382025],"about_ca_topic_score_codex":0.000036676687,"about_ca_topic_score_gemma":0.000055632612,"teacher_disagreement_score":0.035696298,"about_ca_system_score_codex":0.00001960787,"about_ca_system_score_gemma":0.0000496658,"threshold_uncertainty_score":0.83944386},"labels":[],"label_agreement":null},{"id":"W2980768728","doi":"10.1101/807917","title":"(p)ppGpp directly regulates translation initiation during entry into quiescence","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Columbia College","funders":"National Institutes of Health","keywords":"Protein biosynthesis; GTP'; Translation (biology); Stringent response; Cell biology; Bacillus subtilis; Allosteric regulation; GTPase; Downregulation and upregulation; In vivo; Biology; Chemistry; Biochemistry; Bacteria; Enzyme; Messenger RNA; Gene; Escherichia coli; Genetics","score_opus":0.008092008340828481,"score_gpt":0.205506047038697,"score_spread":0.1974140386978685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980768728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943109,0.002483451,0.0005672063,0.000273144,0.0015056522,0.00059313123,0.00009798125,0.00015154395,0.000016977101],"genre_scores_gemma":[0.9936797,0.0019697433,0.003324502,0.00008172433,0.0007377266,0.0000761936,0.000007794147,0.00010531984,0.000017297823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99763894,0.00010698029,0.00048774708,0.001087656,0.00021790393,0.0004607648],"domain_scores_gemma":[0.9980347,0.000010471442,0.00036552173,0.0011958708,0.0002712146,0.00012222995],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00024814592,0.0004971981,0.0003994738,0.00017358361,0.00013392905,0.00013334691,0.00050851924,0.0014338105,0.000019440542],"category_scores_gemma":[0.00008845334,0.00055860635,0.00016386576,0.00020785739,0.00013070599,0.0000113568685,0.0004757651,0.00045128938,0.000036578414],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008687949,0.000060076614,0.0021699837,0.0002900769,0.00009693043,0.0000049780765,0.000007354046,0.000064522355,0.9970874,0.000035267014,0.00008167059,0.000014858667],"study_design_scores_gemma":[0.0004876647,0.00009993583,0.034386482,0.0001701513,0.000059522674,3.9017625e-8,0.000001797064,0.00010899566,0.9573714,0.0000035566425,0.006674721,0.000635745],"about_ca_topic_score_codex":0.000025891519,"about_ca_topic_score_gemma":0.000008387959,"teacher_disagreement_score":0.039716013,"about_ca_system_score_codex":0.00008577672,"about_ca_system_score_gemma":0.0003017066,"threshold_uncertainty_score":0.99986255},"labels":[],"label_agreement":null},{"id":"W2984890408","doi":"10.1016/j.jmb.2019.10.026","title":"A Potent Anti-SpuE Antibody Allosterically Inhibits Type III Secretion System and Attenuates Virulence of Pseudomonas Aeruginosa","year":2019,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Natural Science Foundation of China","keywords":"Pseudomonas aeruginosa; Microbiology; Virulence; Acinetobacter baumannii; Enterococcus faecium; Biology; Bacteria; Virulence factor; Type three secretion system; Spermidine; Chemistry; Antibiotics; Biochemistry; Gene","score_opus":0.004918109496655858,"score_gpt":0.2416729328764107,"score_spread":0.23675482337975484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2984890408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994724,0.0019288849,0.002421541,0.00021706252,0.00042719507,0.00016486013,0.0000122666515,0.0000053189833,0.000098871045],"genre_scores_gemma":[0.99710816,0.0009864602,0.0016084991,0.00012655955,0.00009851124,9.334255e-7,0.000037661917,0.000016884844,0.00001635758],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987203,0.00013035162,0.00053469586,0.00027755427,0.000108233566,0.00022889943],"domain_scores_gemma":[0.99878675,0.000011388569,0.0005258499,0.00026325823,0.00033402725,0.00007874879],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029815678,0.00018337212,0.00043274584,0.00011823832,0.000023939976,0.0000122037945,0.0002444868,0.00042461773,0.0000076160663],"category_scores_gemma":[0.000052482603,0.00014897865,0.000120562756,0.00011951359,0.00016039821,0.0000044598755,0.00020911633,0.00016475712,0.000004334533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025346447,0.000046173227,0.0048857,0.000054142693,0.00011819184,0.000018112478,0.000010709199,0.000017169748,0.9929862,0.000358944,0.000018894929,0.0012323209],"study_design_scores_gemma":[0.0010159987,0.0032361797,0.003006154,0.00009529829,0.000051543248,0.00068851316,0.00006153045,0.000049005215,0.98983425,0.00006845775,0.001705396,0.00018768977],"about_ca_topic_score_codex":0.0000105266445,"about_ca_topic_score_gemma":0.0000012378827,"teacher_disagreement_score":0.0031900064,"about_ca_system_score_codex":0.000012651157,"about_ca_system_score_gemma":0.000084131716,"threshold_uncertainty_score":0.6075173},"labels":[],"label_agreement":null},{"id":"W2985956355","doi":"10.1038/s41467-019-13127-z","title":"Multisite phosphorylation drives phenotypic variation in (p)ppGpp synthetase-dependent antibiotic tolerance","year":2019,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; U.S. Department of Health and Human Services; National Institutes of Health; Azrieli Foundation; National Institute of General Medical Sciences; Burroughs Wellcome Fund","keywords":"Sasa; Multidrug tolerance; Biology; Histidine kinase; Phenotype; Phosphorylation; Population; Gene; Transcription factor; Genetics; Cell biology; Bacteria; Biofilm; Medicine","score_opus":0.005975799242794776,"score_gpt":0.24401002426921967,"score_spread":0.23803422502642488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2985956355","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927305,0.004494424,0.00016386181,0.0009163771,0.00032397587,0.00037556034,0.000030620675,0.00002647215,0.00093822856],"genre_scores_gemma":[0.9939235,0.0013419086,0.0040283115,0.00019712996,0.000050844617,0.000011360154,0.000246426,0.000017713804,0.00018280973],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99915177,0.00009509029,0.00021356849,0.00028878325,0.000085060004,0.0001657176],"domain_scores_gemma":[0.99841833,0.000026758356,0.0001072446,0.0013408742,0.0000788689,0.000027894883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016091723,0.0001255531,0.00013221451,0.000076564065,0.00007231712,0.000025175528,0.0005957468,0.0005665186,0.000018774965],"category_scores_gemma":[0.00006911859,0.00012819054,0.000046265075,0.00017278876,0.000059459526,0.0000067430456,0.00027211205,0.00039470757,0.00005043972],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000334709,0.00011902046,0.019507477,0.000007244773,0.000019082385,2.376786e-7,0.000048316728,0.00012843094,0.9758632,0.001615704,0.00007022671,0.0025875857],"study_design_scores_gemma":[0.0014014703,0.00021193086,0.53660285,0.000068667956,0.000032765387,0.000010271363,0.00006949731,0.0033895168,0.40434813,0.0002879664,0.053055037,0.000521917],"about_ca_topic_score_codex":0.00003978427,"about_ca_topic_score_gemma":0.0008656019,"teacher_disagreement_score":0.5715151,"about_ca_system_score_codex":0.000026448057,"about_ca_system_score_gemma":0.00002871294,"threshold_uncertainty_score":0.52274585},"labels":[],"label_agreement":null},{"id":"W2987406620","doi":"10.7554/elife.23136.026","title":"Author response: Bacterial flagella grow through an injection-diffusion mechanism","year":2017,"lang":"en","type":"peer-review","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Flagellum; Mechanism (biology); Diffusion; Cell biology; Computational biology; Biology; Microbiology; Chemistry; Bacteria; Physics; Genetics; Thermodynamics","score_opus":0.03186097195037263,"score_gpt":0.3227522462358113,"score_spread":0.29089127428543865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2987406620","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.528037,0.03861655,0.005983153,0.2670775,0.119571924,0.008779471,0.0067169606,0.00094173785,0.0242757],"genre_scores_gemma":[0.0141163,0.02417078,0.005183617,0.003823591,0.008793363,0.00019124622,0.012993643,0.00030605693,0.9304214],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99686277,0.00036844987,0.000583176,0.0013086211,0.00031092073,0.0005660928],"domain_scores_gemma":[0.9966748,0.000014111355,0.0005343089,0.0023086993,0.00030371983,0.00016437421],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007781534,0.000681066,0.00076427194,0.00009353829,0.00042776047,0.00016706731,0.0012002125,0.0028104372,0.0010961884],"category_scores_gemma":[0.00040096746,0.0005969689,0.00032729557,0.000076575445,0.00020059163,0.000009648438,0.0008424597,0.00049310544,0.00009496683],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037035262,0.000063544496,4.966842e-7,0.00016958159,0.000058900616,0.0000073734914,0.000007109691,7.74171e-8,0.5847552,0.00012127219,0.41180095,0.0026451705],"study_design_scores_gemma":[0.00040849272,0.001324661,0.000022751798,0.00027290016,0.00011603233,0.00009265758,0.000007386602,0.0000026908315,0.18695621,0.0003949778,0.80977166,0.00062959566],"about_ca_topic_score_codex":0.00024475332,"about_ca_topic_score_gemma":0.00048633528,"teacher_disagreement_score":0.9061457,"about_ca_system_score_codex":0.000038646504,"about_ca_system_score_gemma":0.00043285557,"threshold_uncertainty_score":0.99981695},"labels":[],"label_agreement":null},{"id":"W2987417643","doi":"10.1101/832675","title":"Blocks in tricarboxylic acid cycle of <i>Salmonella enterica</i> cause global perturbation of carbon storage, motility and host-pathogen-interaction","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Deutsche Forschungsgemeinschaft","keywords":"Fumarase; Citric acid cycle; Salmonella enterica; Pentose phosphate pathway; Biology; Biochemistry; Glycolysis; Glycogen; Tricarboxylic acid; Fumarate reductase; Metabolic pathway; Metabolism; Microbiology; Cell biology; Mitochondrion; Succinate dehydrogenase; Enzyme","score_opus":0.007739765304544426,"score_gpt":0.21642807334879266,"score_spread":0.20868830804424823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2987417643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99639505,0.001869636,0.000101195015,0.0000477254,0.0006061141,0.00052571634,0.000417128,0.000023417704,0.000013991446],"genre_scores_gemma":[0.9984128,0.000911773,0.0004594454,0.000026641199,0.000115143106,0.00003112501,0.0000027894828,0.000038022823,0.000002301112],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979961,0.00013034728,0.0005992337,0.0008092045,0.00017289053,0.00029220682],"domain_scores_gemma":[0.998127,0.000010979684,0.00057851174,0.0009253134,0.00027207404,0.00008615374],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002724522,0.00036830973,0.00056177366,0.00014002051,0.000020176396,0.000023561426,0.0003049786,0.0009348912,0.0000034624582],"category_scores_gemma":[0.0001268482,0.00040116283,0.000114338756,0.00026049395,0.00014644007,0.0000043017803,0.0005541429,0.00030367676,6.042585e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015293568,0.00017710897,0.029159188,0.00020639184,0.00009064969,0.0000045214383,0.0000050590256,0.00007500094,0.9701051,0.000008958313,0.0000055343617,0.000009566853],"study_design_scores_gemma":[0.0005584537,0.000260464,0.14526409,0.00010574889,0.000070145245,9.5491785e-8,0.000004064501,0.00072554016,0.8525322,0.0000015317005,0.00019222511,0.0002854663],"about_ca_topic_score_codex":0.0001582304,"about_ca_topic_score_gemma":0.000013473844,"teacher_disagreement_score":0.1175729,"about_ca_system_score_codex":0.00009487765,"about_ca_system_score_gemma":0.00021637992,"threshold_uncertainty_score":0.999844},"labels":[],"label_agreement":null},{"id":"W2987970313","doi":"10.1038/s42003-019-0656-3","title":"ClpP protease activation results from the reorganization of the electrostatic interaction networks at the entrance pores","year":2019,"lang":"en","type":"article","venue":"Communications Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina; Hospital for Sick Children; Ontario Institute for Cancer Research; University of Toronto","funders":"National Research Council Canada; Canadian Institutes of Health Research; Western Economic Diversification Canada; Ontario Genomics Institute; Global Affairs Canada; Ministero dello Sviluppo Economico; Canada Research Chairs; GlaxoSmithKline; Conselho Nacional de Desenvolvimento Científico e Tecnológico; University of Toronto; Ontario Ministry of Economic Development and Innovation; Institute of Infection and Immunity; Canadian Light Source; Fundação de Amparo à Pesquisa do Estado de São Paulo; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Government of Canada; Wellcome Trust; Saskatchewan Health Research Foundation; Ontario Genomics; Eli Lilly and Company; Genome Canada; Natural Sciences and Engineering Research Council of Canada; Pfizer; University of Saskatchewan","keywords":"Biophysics; Chemistry; Proteases; Protease; Serine protease; Activator (genetics); Protein structure; Proteostasis; Cell biology; Enzyme; Biochemistry; Biology","score_opus":0.009174480536302064,"score_gpt":0.24392813041534245,"score_spread":0.23475364987904038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2987970313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98497134,0.00090359093,0.00066375575,0.012322801,0.00025308752,0.0006116724,0.00007134569,0.00000926602,0.00019315809],"genre_scores_gemma":[0.99663883,0.0012458571,0.00015203626,0.00046371334,0.000086268694,0.000031316056,0.0012336164,0.00000976487,0.00013856572],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990393,0.00036230832,0.00025270294,0.00018517349,0.000038391878,0.00012210319],"domain_scores_gemma":[0.9975985,0.00015217945,0.00029249486,0.0018392308,0.00010670366,0.000010843139],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019856365,0.00008956031,0.000085385065,0.000011644516,0.0002201177,0.00001185341,0.0009179036,0.00018816559,0.000018229071],"category_scores_gemma":[0.0002584875,0.000047301914,0.0000477827,0.00017039517,0.0003161088,0.0000030568713,0.00054477766,0.00018777573,0.000009998657],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014405446,0.000032267882,0.005188175,0.0000013760837,0.000041268864,6.1352914e-9,0.00007478614,0.000114981056,0.9906827,0.0008673015,0.0008377922,0.0020152438],"study_design_scores_gemma":[0.000605874,0.0002181131,0.030361123,0.00002669964,0.000037181064,0.000003524307,0.00013229423,0.0012771749,0.78147095,0.00068878115,0.1850419,0.00013635051],"about_ca_topic_score_codex":0.00010841187,"about_ca_topic_score_gemma":0.00026344587,"teacher_disagreement_score":0.20921178,"about_ca_system_score_codex":0.000021162097,"about_ca_system_score_gemma":0.000043864184,"threshold_uncertainty_score":0.19289161},"labels":[],"label_agreement":null},{"id":"W2988772870","doi":"10.1038/s41598-019-52964-2","title":"Structures of GapR reveal a central channel which could accommodate B-DNA","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; University of Ottawa; McGill University","funders":"National Research Council Canada; Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada; University of Saskatchewan; Canadian Light Source","keywords":"Tetramer; DNA; Nucleoid; Biophysics; Helix (gastropod); Binding site; Biology; DNA-binding protein; Crystallography; Chemistry; Cell biology; Genetics; Biochemistry; Escherichia coli; Transcription factor","score_opus":0.007625147396744523,"score_gpt":0.22727559122748323,"score_spread":0.2196504438307387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2988772870","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933378,0.00017381975,0.000024154546,0.000145274,0.0053080176,0.0002483368,0.000017261731,0.000013646393,0.0007316563],"genre_scores_gemma":[0.9977044,0.000017771323,0.0002484662,0.000034713885,0.00012520172,0.0000043206073,0.00023292823,0.000015064189,0.001617146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984023,0.000027231661,0.000368964,0.00064262754,0.00020383552,0.0003550314],"domain_scores_gemma":[0.9984444,0.000002568309,0.00026899343,0.0010213321,0.00018506579,0.00007765091],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034639542,0.00014459284,0.00019777364,0.00007170332,0.00006738664,0.000056960926,0.00023372409,0.0002805369,0.00007747861],"category_scores_gemma":[0.000060384515,0.00012487323,0.00008465562,0.00021813207,0.00016654137,0.0000038204757,0.00022785003,0.00009330383,0.0000071053855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026070375,0.000029949642,0.0025032784,0.000023422115,0.000024146886,0.000007515408,0.000023278035,0.00003403895,0.9923062,0.00005412,0.0044945367,0.0004734922],"study_design_scores_gemma":[0.00015243223,0.00012357839,0.0059754844,0.000011159201,0.00001100575,0.000095495765,0.00002508411,0.000018668186,0.9460321,0.00170043,0.045697305,0.00015726288],"about_ca_topic_score_codex":0.000016949334,"about_ca_topic_score_gemma":0.00003806277,"teacher_disagreement_score":0.046274055,"about_ca_system_score_codex":0.000008050743,"about_ca_system_score_gemma":0.00014062185,"threshold_uncertainty_score":0.5092183},"labels":[],"label_agreement":null},{"id":"W2988876512","doi":"10.1128/msphere.00660-19","title":"Loss of <i>O</i> -Linked Protein Glycosylation in Burkholderia cenocepacia Impairs Biofilm Formation and Siderophore Activity and Alters Transcriptional Regulators","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Health and Medical Research Council; Australian Research Council; Medical Research Council; Department of Education and Training; University of Melbourne; UK Research and Innovation","keywords":"Burkholderia cenocepacia; Glycosylation; Biology; Proteome; Glycoprotein; Quorum sensing; Campylobacter jejuni; Biofilm; Phenotype; Cell biology; N-linked glycosylation; Glycan; Microbiology; Gene; Genetics; Virulence; Bacteria","score_opus":0.0057405009981414505,"score_gpt":0.20113485020794403,"score_spread":0.1953943492098026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2988876512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99892485,0.00030527674,0.000084889194,0.00018392086,0.000053986965,0.00035053742,0.000025364843,0.0000066269668,0.00006452087],"genre_scores_gemma":[0.99928373,0.00013822362,0.0004240096,0.00001932768,0.000025749077,0.000008952792,0.00004658488,0.000010255438,0.000043158332],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939024,0.00003170501,0.00016050985,0.00021932945,0.00006406513,0.00013417419],"domain_scores_gemma":[0.9997117,0.0000028607249,0.00008300267,0.00014096817,0.0000292712,0.000032224103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000085040054,0.000110351895,0.00013576452,0.000031040876,0.000021561484,0.000012348469,0.000050855044,0.0002532799,0.000018731575],"category_scores_gemma":[0.000007703892,0.000105708794,0.000027948105,0.00007011911,0.000083014966,0.00001003037,0.00003891962,0.00006717097,9.618873e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018288888,0.000024648034,0.006247353,0.00007055686,0.000009933782,4.3527604e-7,0.00004297594,0.000009939264,0.98937154,0.00010761107,0.000008617004,0.003923521],"study_design_scores_gemma":[0.00094259053,0.00036816913,0.090104975,0.000031745054,0.000006215569,0.0000112999305,0.00006544799,0.00026080708,0.9066662,0.00020499514,0.0011943608,0.00014319998],"about_ca_topic_score_codex":0.00005267466,"about_ca_topic_score_gemma":0.00014954287,"teacher_disagreement_score":0.083857626,"about_ca_system_score_codex":0.000009750974,"about_ca_system_score_gemma":0.00002360077,"threshold_uncertainty_score":0.43106794},"labels":[],"label_agreement":null},{"id":"W2989992858","doi":"10.1101/847335","title":"A Division of Labor in the Recruitment and Topological Organization of a Bacterial Morphogenic Complex","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institutes of Health; Indiana University Bloomington; University of Missouri","keywords":"FtsZ; Stalk; Cell division; Peptidoglycan; Biology; Cell biology; Cytoskeleton; Cell; Cell wall; Biochemistry","score_opus":0.023519918456453,"score_gpt":0.23820111685328704,"score_spread":0.21468119839683403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2989992858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979113,0.0004463925,0.00015339136,0.0001830096,0.00029597429,0.00075201725,0.0002459943,0.000010240277,0.0000016947266],"genre_scores_gemma":[0.9978638,0.0008314485,0.0010570027,0.00007103723,0.00010754138,0.00003369412,0.000006749259,0.000027880524,8.227728e-7],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986328,0.00015509974,0.00041265084,0.0004722795,0.00013208104,0.00019512106],"domain_scores_gemma":[0.99868846,0.000016931346,0.00033104036,0.0007035727,0.00022481418,0.00003518109],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003398082,0.00023156448,0.00036817807,0.00008770001,0.000026374213,0.000025590569,0.00040136586,0.0006664279,0.000027547372],"category_scores_gemma":[0.00014049045,0.00018381602,0.000055543976,0.00022441919,0.00017281523,0.0000023396308,0.00063334376,0.00019313044,0.0000014472155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004229869,0.000115072195,0.015981406,0.00011051871,0.000042439387,0.000001740225,0.00000709842,0.000009230115,0.983449,0.0002004772,0.000034930632,0.0000058260157],"study_design_scores_gemma":[0.00041329436,0.000238568,0.30252674,0.000049802286,0.000028319599,3.1542516e-8,0.0000045097113,0.000017306173,0.6945105,0.0000018352506,0.0020402488,0.0001688082],"about_ca_topic_score_codex":0.000029295052,"about_ca_topic_score_gemma":0.000004530932,"teacher_disagreement_score":0.28893843,"about_ca_system_score_codex":0.000018389364,"about_ca_system_score_gemma":0.00018845289,"threshold_uncertainty_score":0.74957997},"labels":[],"label_agreement":null},{"id":"W2990366475","doi":"10.1074/jbc.ra119.010505","title":"Peptidoglycomics reveals compositional changes in peptidoglycan between biofilm- and planktonic-derived Pseudomonas aeruginosa","year":2019,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Peptidoglycan; Biofilm; Pseudomonas aeruginosa; Biochemistry; rpoS; Periplasmic space; Cell wall; Bacteria; Bacterial cell structure; Biology; Chemistry; Microbiology; Escherichia coli; Genetics","score_opus":0.014154611374833622,"score_gpt":0.23468132196219121,"score_spread":0.2205267105873576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2990366475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99822277,0.000546065,0.000013687979,0.00074841746,0.00009175175,0.00010109787,0.00006460995,0.0000057443904,0.00020587118],"genre_scores_gemma":[0.99703115,0.0009518955,0.0011828836,0.00016681942,0.0004808825,0.0000024628807,0.00010469408,0.000011001241,0.000068213565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988589,0.000048470574,0.00040998234,0.00029381446,0.000113059294,0.00027577137],"domain_scores_gemma":[0.999273,0.000037985057,0.00030592876,0.00018402292,0.00008048245,0.00011860241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027406667,0.00020127158,0.00039889687,0.00004680651,0.00003048648,0.000023441893,0.00028723874,0.0006025245,0.00007419993],"category_scores_gemma":[0.00005640221,0.00015775177,0.00009628842,0.000076518074,0.0001816963,0.0000035101577,0.0001936618,0.00032545958,0.000003502888],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001985773,0.00004818858,0.06424487,0.00002479906,0.00004179533,0.000011630465,0.000008176481,0.0000026863802,0.93470687,0.000009727692,0.00009316559,0.00060951855],"study_design_scores_gemma":[0.0010821325,0.0007712967,0.053858086,0.000050384224,0.000013315837,0.00027328523,0.00006434579,0.00000322359,0.93948466,0.00017789376,0.00399005,0.00023132845],"about_ca_topic_score_codex":0.0000025723616,"about_ca_topic_score_gemma":0.0000028236047,"teacher_disagreement_score":0.01038678,"about_ca_system_score_codex":0.000025453786,"about_ca_system_score_gemma":0.000052174535,"threshold_uncertainty_score":0.6432931},"labels":[],"label_agreement":null},{"id":"W2990538322","doi":"10.1016/j.bpj.2019.11.014","title":"Differential Local Stability Governs the Metamorphic Fold Switch of Bacterial Virulence Factor RfaH","year":2019,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fondo Nacional de Desarrollo Científico y Tecnológico; National Institute of General Medical Sciences; Comisión Nacional de Investigación Científica y Tecnológica; Deutsche Forschungsgemeinschaft; National Institutes of Health; International Union of Biochemistry and Molecular Biology; American Society for Biochemistry and Molecular Biology; Pontificia Universidad Católica de Chile; Nvidia","keywords":"Biophysics; RNA polymerase; Operon; Förster resonance energy transfer; Protein structure; Biology; Chemistry; RNA; Crystallography; Escherichia coli; Biochemistry; Physics; Gene","score_opus":0.010451676101421737,"score_gpt":0.21776016767373224,"score_spread":0.20730849157231052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2990538322","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997139,0.00003361905,0.0013196523,0.00024898458,0.00096429227,0.00015409674,0.00009328578,0.000006052603,0.00004106075],"genre_scores_gemma":[0.9988545,0.0000930863,0.00007440769,0.00004717052,0.0008475561,0.000002717188,0.000017700697,0.00001633543,0.00004648989],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874336,0.00010309298,0.000332199,0.0002882366,0.0002411761,0.00029191995],"domain_scores_gemma":[0.9991263,0.00001939959,0.00021612618,0.000438028,0.00010637781,0.000093760624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000098338845,0.00019038726,0.00027245286,0.000019627816,0.00007148565,0.000045395704,0.00049876375,0.00025456064,0.0005319981],"category_scores_gemma":[0.000032423486,0.00011929505,0.00025516003,0.000079162324,0.0002667964,0.00000556714,0.00025468238,0.00028937683,0.000026246194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028349654,0.0001423317,0.00058274023,0.000010446719,0.000084214385,0.0000010681944,0.000014959759,0.0000017879847,0.9961132,0.00013732133,0.00006300307,0.002565424],"study_design_scores_gemma":[0.00056712877,0.00072049606,0.013971723,0.000008083441,0.000033404976,0.00002357883,0.000036097736,0.000060697468,0.9800668,0.000063154475,0.0042888885,0.00015994719],"about_ca_topic_score_codex":0.000013812819,"about_ca_topic_score_gemma":0.000008311383,"teacher_disagreement_score":0.016046407,"about_ca_system_score_codex":0.000018858367,"about_ca_system_score_gemma":0.00008636379,"threshold_uncertainty_score":0.5825006},"labels":[],"label_agreement":null},{"id":"W2993021379","doi":"","title":"Reduced membrane fluidity of a SigX deficient strain results in altered carboncatabolic repression response in Pseudomonas aeruginosa","year":2017,"lang":"en","type":"preprint","venue":"HAL (Le Centre pour la Communication Scientifique Directe)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum","funders":"","keywords":"Psychological repression; Pseudomonas aeruginosa; Catabolism; Strain (injury); Membrane fluidity; Chemistry; Membrane; Microbiology; Biophysics; Cell biology; Bacteria; Biochemistry; Biology; Metabolism; Gene; Genetics; Gene expression; Anatomy","score_opus":0.016353418002803252,"score_gpt":0.25377032111382897,"score_spread":0.2374169031110257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2993021379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99189746,0.0010729366,0.0003403066,0.0035967245,0.0002635375,0.0005346646,0.0004464113,0.00002465199,0.0018232855],"genre_scores_gemma":[0.9923355,0.0017821188,0.0040829903,0.000019397863,0.000033019667,0.000052921714,0.0010824408,0.00003223362,0.0005793506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9933515,0.0040305434,0.0008845989,0.0010981591,0.0002482331,0.00038693307],"domain_scores_gemma":[0.9948588,0.00021589079,0.00080083223,0.003413504,0.00060895126,0.0001020407],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.006498232,0.00033026305,0.00049887225,0.00027664375,0.00009855948,0.0000886332,0.001379346,0.00087019807,0.000009182301],"category_scores_gemma":[0.003936495,0.00035186115,0.00015940946,0.00018422448,0.00034819747,0.000006032777,0.001958628,0.0005664193,0.0000019086765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081005576,0.00038245087,0.00030203344,0.00006893694,0.000019686477,0.00000620567,0.000947375,0.00011676038,0.9912947,0.00023526394,0.00008054584,0.005736012],"study_design_scores_gemma":[0.0013930349,0.000004352206,0.02214802,0.0010357882,0.000013857528,0.000007663082,0.000045050616,0.00080154254,0.9714289,0.0002411026,0.0025473917,0.0003333207],"about_ca_topic_score_codex":0.0018111832,"about_ca_topic_score_gemma":0.0026637078,"teacher_disagreement_score":0.021845987,"about_ca_system_score_codex":0.00006145416,"about_ca_system_score_gemma":0.00049768976,"threshold_uncertainty_score":0.99989337},"labels":[],"label_agreement":null},{"id":"W2995750067","doi":"10.1128/msphere.00796-19","title":"Blocks in Tricarboxylic Acid Cycle of Salmonella enterica Cause Global Perturbation of Carbon Storage, Motility, and Host-Pathogen Interaction","year":2019,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Deutsche Forschungsgemeinschaft","keywords":"Fumarase; Citric acid cycle; Salmonella enterica; Pentose phosphate pathway; Biochemistry; Biology; Glycolysis; Glycogen; Tricarboxylic acid; Metabolic pathway; Metabolism; Fumarate reductase; Metabolome; Microbiology; Mitochondrion; Enzyme; Succinate dehydrogenase; Metabolite; Escherichia coli","score_opus":0.0056492230176201155,"score_gpt":0.22742223108117765,"score_spread":0.22177300806355754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2995750067","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99816275,0.0006398385,0.000012193072,0.000045841578,0.00013547186,0.00017165078,0.000036113484,0.0000048081106,0.00079132465],"genre_scores_gemma":[0.99956065,0.00016188019,0.00012715188,0.00001491742,0.00002803672,0.0000038513426,0.000022617396,0.000007650617,0.00007326254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932116,0.000041498217,0.0002179155,0.00023724532,0.000064689855,0.00011746536],"domain_scores_gemma":[0.9995622,0.000004279924,0.00012293151,0.00023674789,0.000047854774,0.000025953459],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065161235,0.000102144506,0.00017739739,0.000024526948,0.0000069126286,0.000004918973,0.000094982235,0.00022112066,0.000019120318],"category_scores_gemma":[0.00002524049,0.000098786964,0.00003814084,0.00011005595,0.000049061393,0.0000017828355,0.0001172281,0.00005987752,6.553393e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012093391,0.00007282726,0.049985126,0.000029264482,0.00002199243,9.5040394e-7,0.000031112777,0.00002466665,0.94703996,0.000006600362,0.000007144413,0.002659427],"study_design_scores_gemma":[0.0009911053,0.0009553549,0.14790753,0.000035996683,0.00002790462,0.000016936396,0.00017556442,0.0011367555,0.8478456,0.00007558233,0.0006643891,0.00016728592],"about_ca_topic_score_codex":0.00015650496,"about_ca_topic_score_gemma":0.00011505188,"teacher_disagreement_score":0.099194355,"about_ca_system_score_codex":0.00001923775,"about_ca_system_score_gemma":0.00002463508,"threshold_uncertainty_score":0.40284154},"labels":[],"label_agreement":null},{"id":"W2997383690","doi":"10.1038/s41598-019-56886-x","title":"Regulatory Role of PlaR (YiaJ) for Plant Utilization in Escherichia coli K-12","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Escherichia coli; Biology; Operon; Effector; Nutrient; Gene; Regulator; Transcriptome; Function (biology); Transcription factor; Microbiology; rpoS; Genetics; Computational biology; Biochemistry; Gene expression; Promoter","score_opus":0.009755932525052833,"score_gpt":0.2208125697062368,"score_spread":0.21105663718118398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2997383690","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99671674,0.00026710037,0.000050459705,0.000019452555,0.0022068108,0.0003866167,0.000012668883,0.0000069895846,0.0003331715],"genre_scores_gemma":[0.9982557,0.000014574966,0.00051396707,0.0000133587855,0.000050982275,0.000015559404,0.00029882608,0.000010938024,0.00082607544],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989502,0.000015817499,0.00031130767,0.00043934872,0.00010610799,0.00017721849],"domain_scores_gemma":[0.99917614,0.0000038406506,0.00018956317,0.0005280564,0.00007193238,0.000030481251],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004447249,0.000085021464,0.00013444714,0.00007480003,0.000032206248,0.000020890197,0.00010194471,0.0002093389,0.000017519906],"category_scores_gemma":[0.00004951958,0.00008118489,0.000052886386,0.00011536624,0.000106072584,0.0000027780638,0.00006973557,0.00003656255,0.0000020094726],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038768634,0.00004451294,0.0057912692,0.000020411846,0.000007921641,0.0000018060582,0.000019557541,0.000029475072,0.99258626,0.0001234189,0.0006776618,0.0006589603],"study_design_scores_gemma":[0.0001570764,0.00010914297,0.0038813765,0.000011313749,0.000004295871,0.000009494213,0.00003206153,0.00012562666,0.8409394,0.0008440482,0.15379927,0.00008689768],"about_ca_topic_score_codex":0.000008800048,"about_ca_topic_score_gemma":0.00004812978,"teacher_disagreement_score":0.1531216,"about_ca_system_score_codex":0.000009037971,"about_ca_system_score_gemma":0.00010987593,"threshold_uncertainty_score":0.33106238},"labels":[],"label_agreement":null},{"id":"W2997963046","doi":"10.1096/fj.201901989r","title":"Crystal structure of proteolyzed VapBC and DNA‐bound VapBC from <i>Salmonella enterica</i> Typhimurium LT2 and VapC as a putative Ca <sup>2+</sup> ‐dependent ribonuclease","year":2019,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; University Health Network","funders":"National Research Foundation of Korea","keywords":"Ribonuclease; DNA; Antitoxin; Biology; Salmonella enterica; Salmonella; DNA-binding domain; Biophysics; Genetics; RNA; Bacteria; Gene; Toxin","score_opus":0.004064075807606043,"score_gpt":0.20191417602023964,"score_spread":0.1978501002126336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2997963046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99774796,0.0008756713,0.000071496084,0.00038475383,0.00015207623,0.00033985058,0.0003357963,0.000006239151,0.00008614369],"genre_scores_gemma":[0.99851537,0.0003865749,0.0003577606,0.0002326507,0.00025540392,0.0000027844276,0.000056832712,0.000027056343,0.00016554826],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987574,0.00013707823,0.0003076056,0.00033988568,0.00017703485,0.0002809505],"domain_scores_gemma":[0.9991741,0.000022493647,0.00025357312,0.0003101797,0.00010222499,0.00013740113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015122547,0.000239379,0.00028443997,0.000049796487,0.00012952795,0.00009014957,0.00026952886,0.00028001462,0.0001406425],"category_scores_gemma":[0.00003964645,0.000166902,0.00007890078,0.000062680614,0.00027137288,0.00000819295,0.0003084813,0.00032808087,0.000006658726],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00055057905,0.000039873983,0.0006791464,0.000015986983,0.00017655823,0.000012328955,0.0003824697,0.00006789185,0.9974375,0.000013280504,0.00009406144,0.0005303263],"study_design_scores_gemma":[0.0017543647,0.0009881409,0.0011480773,0.000029785444,0.0000916846,0.0005384429,0.00072819594,0.00024701387,0.99153596,0.0013764444,0.0013192303,0.0002426596],"about_ca_topic_score_codex":0.00009243104,"about_ca_topic_score_gemma":0.00001243189,"teacher_disagreement_score":0.0059015364,"about_ca_system_score_codex":0.000013253037,"about_ca_system_score_gemma":0.000091387265,"threshold_uncertainty_score":0.6806066},"labels":[],"label_agreement":null},{"id":"W2998071115","doi":"10.3390/microorganisms8010059","title":"Novel Sequence Feature of SecA Translocase Protein Unique to the Thermophilic Bacteria: Bioinformatics Analyses to Investigate Their Potential Roles","year":2019,"lang":"en","type":"article","venue":"Microorganisms","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Thermotoga maritima; Thermophile; Thermostability; Biology; Translocase; ATPase; Phylogenetic tree; Biochemistry; Bacteria; Gene; Conserved sequence; Multiple sequence alignment; Function (biology); Biophysics; Sequence alignment; Escherichia coli; Computational biology; Genetics; Peptide sequence; Enzyme","score_opus":0.014201994053768773,"score_gpt":0.2362337373929749,"score_spread":0.22203174333920614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998071115","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920602,0.00009457664,0.003600649,0.0029936482,0.00012335813,0.0007927298,0.00028159836,0.000018544193,0.000034725203],"genre_scores_gemma":[0.98655653,0.000023741311,0.011814208,0.0010876607,0.00009773243,0.000018439601,0.00009734526,0.000032289558,0.00027207937],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989958,0.000042553456,0.0002682626,0.0003088868,0.00009451415,0.0002899964],"domain_scores_gemma":[0.99902546,0.000003777344,0.00010715416,0.0006465621,0.00011261976,0.00010442566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015080132,0.00024244537,0.00023803789,0.0000717417,0.00006311697,0.000043336782,0.000573216,0.0003324043,0.000030291618],"category_scores_gemma":[0.0000198442,0.00016147694,0.0000958881,0.0002586627,0.00010246823,0.000004620381,0.00023386236,0.00014302827,0.00003241163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000069965005,0.000032309243,0.000014821279,0.00002737568,0.000059712696,0.0000010027303,0.00023890556,0.00009085908,0.9979134,0.000029021096,0.00013427308,0.001388357],"study_design_scores_gemma":[0.00026387622,0.0005228019,0.0004097765,0.0000296065,0.000020335901,0.000045660374,0.00016838149,0.000032303207,0.9892614,0.000031700834,0.008994541,0.00021962609],"about_ca_topic_score_codex":0.000031355565,"about_ca_topic_score_gemma":0.00006512735,"teacher_disagreement_score":0.008860269,"about_ca_system_score_codex":0.000012130761,"about_ca_system_score_gemma":0.00010966158,"threshold_uncertainty_score":0.65848386},"labels":[],"label_agreement":null},{"id":"W2998110188","doi":"10.1002/pro.3819","title":"Molecular mechanisms of vancomycin resistance","year":2020,"lang":"en","type":"review","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":367,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Toronto","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Vancomycin; Resistance (ecology); Computational biology; Genetics; Microbiology; Chemistry; Biology; Bacteria; Staphylococcus aureus; Ecology","score_opus":0.015640348191237458,"score_gpt":0.28028572114962996,"score_spread":0.2646453729583925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998110188","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000111357236,0.995269,0.0029795186,0.000062825005,0.0001537512,0.0008142109,0.000043083543,0.000014748093,0.00055151776],"genre_scores_gemma":[0.0019303481,0.986597,0.011040375,0.000033074222,0.0000698119,0.000101452664,0.00002213669,0.000034116434,0.000171709],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981547,0.000059984628,0.00041850779,0.0007682142,0.0002783488,0.00032026882],"domain_scores_gemma":[0.99869287,0.0000037990255,0.0003677594,0.0007144749,0.00011710755,0.00010398293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033713126,0.00028005525,0.00068837946,0.00010743505,0.00006406226,0.000028934946,0.0012607226,0.00037923793,0.0000077370205],"category_scores_gemma":[0.00021219063,0.00023659958,0.00020806555,0.00068683154,0.00054008106,0.000002396662,0.00061071035,0.00017720161,0.000012338445],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008364268,0.000021152619,2.4076067e-8,0.0015637991,0.000020257687,0.000007054574,0.0000020539906,1.383357e-7,0.72849137,0.00448692,0.000025343734,0.2653735],"study_design_scores_gemma":[0.00004201383,0.0001479215,7.783742e-8,0.000625472,0.000028471482,0.0000049203827,0.0000012724823,4.676412e-7,0.37461954,0.00057304103,0.6237853,0.00017150029],"about_ca_topic_score_codex":0.000001831914,"about_ca_topic_score_gemma":0.0000041394887,"teacher_disagreement_score":0.6237599,"about_ca_system_score_codex":0.000021934451,"about_ca_system_score_gemma":0.00070090586,"threshold_uncertainty_score":0.96482503},"labels":[],"label_agreement":null},{"id":"W2998781879","doi":"10.7554/elife.52158","title":"A processive rotary mechanism couples substrate unfolding and proteolysis in the ClpXP degradation machinery","year":2020,"lang":"en","type":"article","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"AAA proteins; Proteolysis; Biophysics; Protease; Biology; Serine protease; Structural biology; ATP hydrolysis; Proteases; Protein structure; Protein subunit; Cell biology; Crystallography; Biochemistry; Chemistry; Enzyme; ATPase","score_opus":0.012360236986006653,"score_gpt":0.22020995392778722,"score_spread":0.20784971694178056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998781879","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99554527,0.0006542468,0.00050299364,0.0029444103,0.00002674066,0.0002687136,0.000010076233,0.000010381086,0.00003714625],"genre_scores_gemma":[0.9975367,0.00045785564,0.0005828315,0.0011604795,0.00013684249,0.00004201902,0.00006241034,0.000009117784,0.000011736359],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993762,0.000037256923,0.000136668,0.00023603813,0.00008218456,0.00013166212],"domain_scores_gemma":[0.99976,0.0000050164085,0.000059003985,0.000114314775,0.000027756227,0.00003395871],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012262672,0.00010076651,0.00009431029,0.000021441036,0.000050954375,0.000030782794,0.00014637526,0.00013867297,0.0000033557703],"category_scores_gemma":[0.00005635842,0.000072776085,0.000023923993,0.00011565439,0.000038859936,0.000002277886,0.00007097873,0.00009918209,0.000001682008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004220118,0.000014570687,0.0012877402,0.000017343411,0.000013427706,0.000004674438,0.00010861482,0.00000853187,0.9957953,0.00025979505,0.00005632204,0.002391493],"study_design_scores_gemma":[0.00038753913,0.00028118287,0.0037139526,0.000010147055,0.000017302025,0.000015138329,0.00029270732,0.0008417847,0.9911925,0.00019725843,0.0028895738,0.00016089855],"about_ca_topic_score_codex":0.000021174546,"about_ca_topic_score_gemma":0.00007684861,"teacher_disagreement_score":0.0046027703,"about_ca_system_score_codex":0.000002737943,"about_ca_system_score_gemma":0.000032285523,"threshold_uncertainty_score":0.29677224},"labels":[],"label_agreement":null},{"id":"W2999954718","doi":"10.1101/2020.01.13.903641","title":"Dynamic interactions between the RNA chaperone Hfq, small regulatory RNAs and mRNAs in live bacterial cells","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Division of Materials Research; Canadian Institutes of Health Research; Materials Research Science and Engineering Center, Harvard University; Searle Scholars Program; National Science Foundation; National Institutes of Health; Université de Sherbrooke; University of Chicago","keywords":"RNase P; Biology; Cell biology; RNA; RNA-binding protein; Messenger RNA; Gene expression; Gene; Genetics","score_opus":0.011473843416807008,"score_gpt":0.20955702251061697,"score_spread":0.19808317909380996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2999954718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99543786,0.0008391202,0.00023273865,0.0012021349,0.0013436982,0.00061367464,0.00023280445,0.00009444781,0.0000035178482],"genre_scores_gemma":[0.99601114,0.0012895707,0.0013978624,0.00018925407,0.0008758869,0.000092164926,0.0000044966932,0.00013247416,0.000007133729],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99758476,0.00016648867,0.00053545524,0.0010980733,0.00013820744,0.0004770169],"domain_scores_gemma":[0.9982255,0.00002657492,0.00035288243,0.0010691487,0.00013831872,0.00018753941],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000300116,0.0005259151,0.00050657056,0.00013236015,0.0001105776,0.00015706895,0.0006715825,0.0009486264,0.000016727023],"category_scores_gemma":[0.00008785348,0.00048684631,0.00013219705,0.00018113703,0.0002998015,0.0000066540397,0.001384082,0.00089522195,0.000016483036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006348647,0.000044977995,0.0008225378,0.00006654806,0.00014660164,0.00000960563,0.000012969442,0.000006290161,0.99867606,0.000037760834,0.000086470696,0.000026660551],"study_design_scores_gemma":[0.0005335794,0.00017831463,0.07523243,0.00011391645,0.00010216199,7.109519e-8,0.000009469951,0.0000866397,0.901752,0.000004575002,0.021370616,0.00061625027],"about_ca_topic_score_codex":0.00006177554,"about_ca_topic_score_gemma":0.000072825,"teacher_disagreement_score":0.09692412,"about_ca_system_score_codex":0.000084465275,"about_ca_system_score_gemma":0.0002940779,"threshold_uncertainty_score":0.9997583},"labels":[],"label_agreement":null},{"id":"W3001509417","doi":"10.1139/cjm-2019-0493","title":"FtsA G50E mutant suppresses the essential requirement for FtsK during bacterial cell division in <i>Escherichia coli</i>","year":2020,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Escherichia coli; Mutant; Cell division; Biology; Microbiology; Bacteria; Escherichia coli Proteins; Division (mathematics); Cell biology; Cell; Genetics; Gene","score_opus":0.00778638361828908,"score_gpt":0.19856661924089813,"score_spread":0.19078023562260907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3001509417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947489,0.0006824109,0.00016282458,0.003115371,0.0008597248,0.00023761539,0.00016784358,0.0000020792577,0.000023222668],"genre_scores_gemma":[0.99816835,0.00014195176,0.00026043467,0.00067666796,0.0006365723,0.00000533929,0.00007016241,0.000019562325,0.000020966081],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99882585,0.00009100076,0.0004248183,0.00023451017,0.00002781487,0.0003960075],"domain_scores_gemma":[0.99930274,0.00001493108,0.0002180115,0.00016368588,0.000104951665,0.00019565628],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001832629,0.00015887695,0.00024433332,0.000063835454,0.00010203349,0.000033914603,0.00045559296,0.00029939626,0.000061006867],"category_scores_gemma":[0.0000908756,0.00012260172,0.000118643766,0.000086806605,0.00017080251,0.0000041148655,0.00007434096,0.0001842676,0.0000027036713],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002475773,0.000015806232,0.0003536805,0.000021109843,0.000032316686,0.000020211475,0.00008180837,0.000028983159,0.9972721,0.000010372629,0.0018051451,0.000110932655],"study_design_scores_gemma":[0.0011572045,0.0006350351,0.0006413193,0.0000120386285,0.000019068078,0.000045767785,0.00006603005,0.0000033363228,0.85131866,0.000013399882,0.14595811,0.00013002721],"about_ca_topic_score_codex":0.0001718327,"about_ca_topic_score_gemma":0.004002153,"teacher_disagreement_score":0.1459534,"about_ca_system_score_codex":0.000031511066,"about_ca_system_score_gemma":0.0005277003,"threshold_uncertainty_score":0.4999553},"labels":[],"label_agreement":null},{"id":"W3002786686","doi":"10.1099/jmm.0.001139","title":"Metabolic manipulation by Pseudomonas fluorescens: a powerful stratagem against oxidative and metal stress","year":2020,"lang":"en","type":"review","venue":"Journal of Medical Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Laurentian University","funders":"Laurentian University","keywords":"Pseudomonas fluorescens; Organism; Metabolic pathway; Biology; Oxidative stress; Microbial metabolism; Metabolism; Oxidative phosphorylation; Reactive oxygen species; Intracellular; Biochemistry; Microbiology; Bacteria; Genetics","score_opus":0.014982791325079516,"score_gpt":0.28122038999510623,"score_spread":0.2662375986700267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3002786686","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005885984,0.99201024,0.00018055331,0.00059945387,0.0005992045,0.00026093278,0.00044092032,0.0000063374464,0.000016362077],"genre_scores_gemma":[0.00089267077,0.9966044,0.0004174471,0.00026679414,0.0008339368,0.0000037425993,0.00090318115,0.000044004566,0.000033856966],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997461,0.000428268,0.0011068329,0.00048183085,0.0001800217,0.00034201998],"domain_scores_gemma":[0.9982837,0.00004836113,0.0010195075,0.00024188143,0.000121173216,0.0002854097],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000499485,0.00046127941,0.0017678926,0.0001410559,0.000041695286,0.000032330187,0.00071875495,0.0019918056,0.000059661434],"category_scores_gemma":[0.00035420767,0.00033037673,0.0004200664,0.00014068095,0.00039263704,0.000004784002,0.00043852773,0.0009447821,0.000010208035],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006789154,0.00012918755,0.0000036786448,0.0008046404,0.0012408932,0.00014032952,0.000014218815,1.1541138e-7,0.32394978,0.00007507467,0.0065606437,0.6670135],"study_design_scores_gemma":[0.0005925308,0.00064315496,0.0000017113118,0.00077719975,0.0005111934,0.0015348137,0.00002154256,0.0000016069356,0.0109594995,0.000009201746,0.9846482,0.00029933636],"about_ca_topic_score_codex":0.000004335736,"about_ca_topic_score_gemma":0.0000071128698,"teacher_disagreement_score":0.97808754,"about_ca_system_score_codex":0.000019846688,"about_ca_system_score_gemma":0.0004407836,"threshold_uncertainty_score":0.9999148},"labels":[],"label_agreement":null},{"id":"W3004514707","doi":"10.1073/pnas.1914741117","title":"Loss of phenotypic inheritance associated with <i>ydcI</i> mutation leads to increased frequency of small, slow persisters in <i>Escherichia coli</i>","year":2020,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Environment Research Council; Medical Research Council; Directorate for Biological Sciences; Keio University; National Institutes of Health; Biotechnology and Biological Sciences Research Council; University of Surrey; National Institute of Allergy and Infectious Diseases; University of Edinburgh; Institute of Genetics; Research Councils UK","keywords":"Biology; Phenotype; Genetics; Escherichia coli; Population; Mutant; Gene; Mutation; Medicine","score_opus":0.021441666325613135,"score_gpt":0.24081344538111402,"score_spread":0.21937177905550087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3004514707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976375,0.000088646644,0.000004040748,0.0017696111,0.000007247901,0.0001600773,0.000041557447,0.0000025076024,0.0002888261],"genre_scores_gemma":[0.99703884,0.000019086552,0.0024067971,0.000499422,0.000019110212,0.000005711854,0.0000013799981,0.000004176575,0.000005473658],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910295,0.000009552148,0.0002806165,0.00020715379,0.00029246445,0.00010728899],"domain_scores_gemma":[0.9993016,0.000015935135,0.00038561586,0.000010901284,0.00025740004,0.000028544573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034281905,0.00008082182,0.00016653918,0.00005379276,0.00002861457,0.0000046263117,0.00046612552,0.00013702216,0.0000014523456],"category_scores_gemma":[0.00035316896,0.0000607323,0.00004112269,0.000692951,0.000502434,0.000010898215,0.00006953623,0.000080226695,9.268513e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000074201045,0.00004074525,0.02400794,0.00004349592,0.000016201813,8.68905e-9,0.00012159225,0.00008327067,0.97506803,0.0004733215,0.00002887994,0.000042322994],"study_design_scores_gemma":[0.0002902687,0.000355461,0.08325927,0.000062631836,0.00001040667,6.5398797e-7,0.00010143509,0.00006161713,0.9153529,0.00042025134,0.000019509696,0.00006564371],"about_ca_topic_score_codex":0.00001197577,"about_ca_topic_score_gemma":0.0000026319437,"teacher_disagreement_score":0.059715163,"about_ca_system_score_codex":0.000011509268,"about_ca_system_score_gemma":0.000055199314,"threshold_uncertainty_score":0.24765915},"labels":[],"label_agreement":null},{"id":"W3005718707","doi":"10.1016/j.jmb.2020.01.041","title":"Carbohydrate-Binding Capability and Functional Conformational Changes of AbnE, an Arabino-oligosaccharide Binding Protein","year":2020,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"H2020 European Research Council; Israeli Centers for Research Excellence; European Research Council; Russell Berrie Nanotechnology Institute, Technion-Israel Institute of Technology; Technion-Israel Institute of Technology; Ministry of Science and Technology, Israel; Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion-Israel Institute of Technology; Azrieli Foundation; Horizon 2020 Framework Programme; Leona M. and Harry B. Helmsley Charitable Trust; Ministry of Science and Technology; Israel Science Foundation; Seventh Framework Programme; Weizmann Institute of Science; Ministry of Environmental Protection; Nancy and Stephen Grand Technion Energy Program; European Synchrotron Radiation Facility","keywords":"Isothermal titration calorimetry; ATP-binding cassette transporter; Chemistry; Oligosaccharide; Geobacillus stearothermophilus; Biochemistry; Thermophile; Transmembrane protein; Mutagenesis; Nucleotide sugar; Crystallography; Biophysics; Biology; Enzyme; Biosynthesis; Transporter; Mutant","score_opus":0.015694663879751353,"score_gpt":0.2413653843985289,"score_spread":0.22567072051877754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3005718707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99619615,0.0003176093,0.0017258998,0.0013727145,0.00015028381,0.0001456853,0.000058296002,0.0000045987495,0.000028748227],"genre_scores_gemma":[0.9976381,0.000090718124,0.0017499443,0.00020482141,0.00020936065,0.0000043782006,0.00008537212,0.0000118591215,0.000005431596],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893624,0.00010911255,0.00043059513,0.00022185914,0.00010740019,0.00019481954],"domain_scores_gemma":[0.99906135,0.000008606716,0.0004363862,0.0001415966,0.00021629638,0.00013575135],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029712333,0.00015380973,0.00028727998,0.00010396608,0.00004559588,0.000014060528,0.00018047339,0.00032563545,0.000021992566],"category_scores_gemma":[0.00015346777,0.00013339391,0.00008343922,0.000102340426,0.00020961485,0.000007748069,0.00011883189,0.00018113325,0.0000011537217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002193696,0.000034737037,0.00094334554,0.000030554475,0.000074257805,0.000004980455,0.0000348992,0.000017618839,0.9970188,0.00053109863,0.000018431443,0.0010718904],"study_design_scores_gemma":[0.00060061977,0.0018825954,0.00077194587,0.000013546013,0.000027127377,0.00008076402,0.00007587639,0.00004531633,0.9946348,0.00022365304,0.001503303,0.0001404539],"about_ca_topic_score_codex":0.000006082889,"about_ca_topic_score_gemma":0.0000069214584,"teacher_disagreement_score":0.0023840177,"about_ca_system_score_codex":0.000011059557,"about_ca_system_score_gemma":0.00011978931,"threshold_uncertainty_score":0.5439646},"labels":[],"label_agreement":null},{"id":"W3007270540","doi":"10.1101/2020.02.28.965145","title":"Conserved regulation of omptin proteases by the PhoPQ two-component regulatory system in Enterobacteriaceae","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Proteases; Citrobacter rodentium; Escherichia coli; Biology; Bacteria; Citrobacter; Protease; Microbiology; Mutant; Enterobacteriaceae; Gene; Two-component regulatory system; Cell biology; Genetics; Biochemistry; Enzyme","score_opus":0.010101035127506845,"score_gpt":0.20116792500222597,"score_spread":0.19106688987471912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007270540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99573874,0.0012459113,0.00021471271,0.00046197872,0.00060692884,0.0012134638,0.00043783846,0.00007650521,0.0000039361676],"genre_scores_gemma":[0.9983978,0.00011702025,0.00081424316,0.00009354338,0.0002984913,0.00018441296,0.000010656499,0.00008004352,0.000003749754],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997469,0.0002903201,0.0007452805,0.00090178294,0.00022363792,0.0003699926],"domain_scores_gemma":[0.9976827,0.000013633367,0.00067037705,0.0013018671,0.00021806602,0.000113385606],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044483365,0.00046279375,0.00055122323,0.00010011071,0.000073003655,0.00006855443,0.000690857,0.00074747956,0.000009139268],"category_scores_gemma":[0.00008160547,0.00041710993,0.00016489383,0.00020386535,0.0002491976,0.000004717195,0.00076819875,0.0003993824,0.0000061942837],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018361477,0.000093141854,0.0027273907,0.00035443125,0.00011215426,0.0000035687933,0.0000037652792,0.000027908056,0.9958486,0.00017678867,0.0004652231,0.0000033979506],"study_design_scores_gemma":[0.00079319905,0.00012037076,0.05543805,0.00032448926,0.000046691464,6.509953e-8,0.000005391741,0.00015101953,0.93662196,0.0000011645668,0.0061023305,0.00039529047],"about_ca_topic_score_codex":0.00008674253,"about_ca_topic_score_gemma":0.000010138033,"teacher_disagreement_score":0.059226677,"about_ca_system_score_codex":0.00010073076,"about_ca_system_score_gemma":0.0002962599,"threshold_uncertainty_score":0.9998281},"labels":[],"label_agreement":null},{"id":"W3008506689","doi":"10.1101/2020.02.20.958512","title":"Bound2Learn: A Machine Learning Approach for Classification of DNA-Bound Proteins from Single-Molecule Tracking Experiments","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Cancer Institute; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Tracking (education); DNA; Biological system; Saccharomyces cerevisiae; In silico; Stability (learning theory); Genome; Computational biology; Visualization; Computer science; Kinetics; Data mining; Chemistry; Biology; Machine learning; Physics; Gene; Biochemistry","score_opus":0.031070718098608036,"score_gpt":0.24030561068390188,"score_spread":0.20923489258529385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3008506689","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.950111,0.0017042692,0.04576191,0.00015402588,0.00034614824,0.0013174991,0.0004897499,0.00010345663,0.0000119775605],"genre_scores_gemma":[0.96828794,0.00014298213,0.030373825,0.00006511414,0.0005586262,0.00036636888,0.000053135023,0.00014699994,0.000004999125],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99739915,0.0001316539,0.0005898321,0.0012454964,0.00021834542,0.00041549845],"domain_scores_gemma":[0.99793977,0.00001296292,0.00068363646,0.00087720936,0.00033923355,0.00014716378],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023464228,0.0004966717,0.000551009,0.0001077622,0.00014376457,0.00015682285,0.0006099841,0.0011219681,0.000008796338],"category_scores_gemma":[0.00026212062,0.0005542212,0.0002278331,0.00017907178,0.00017925851,0.0000070231863,0.0005610129,0.0004964022,0.00000279485],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018078537,0.00026247665,0.00045909587,0.00021450286,0.0002396021,0.0000023642694,0.0000108307195,0.000028745955,0.99848425,0.000068021654,0.00003237205,0.000016919614],"study_design_scores_gemma":[0.00069110584,0.0004462686,0.0020705978,0.00007563687,0.00009803461,2.2266937e-8,0.0000072754005,0.001974817,0.98683435,0.0000035844794,0.0072463728,0.00055191363],"about_ca_topic_score_codex":0.000048566973,"about_ca_topic_score_gemma":0.0000027594792,"teacher_disagreement_score":0.018176988,"about_ca_system_score_codex":0.00007157931,"about_ca_system_score_gemma":0.00028832475,"threshold_uncertainty_score":0.99969095},"labels":[],"label_agreement":null},{"id":"W3010209973","doi":"10.1186/s12866-019-1668-3","title":"In vitro synergy between sodium deoxycholate and furazolidone against enterobacteria","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Business, Innovation and Employment; Keio University; Institute of Genetics; New Zealand Vice-Chancellors' Committee; Massey University; Callaghan Innovation","keywords":"Furazolidone; Escherichia coli; Biology; Nitrofuran; Efflux; Salmonella enterica; Microbiology; Klebsiella pneumoniae; Enterobacteriaceae; Colistin; Antimicrobial; Salmonella; Bacteria; Biochemistry; Antibiotics; Gene","score_opus":0.011132918362841093,"score_gpt":0.21591546246718354,"score_spread":0.20478254410434246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010209973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99761075,0.00046156446,0.00021503802,0.0011382309,0.00020473913,0.00015769438,0.0001243829,0.000019711051,0.00006788791],"genre_scores_gemma":[0.99546516,0.00034048784,0.0011924462,0.002026142,0.00040308724,0.0000100867655,0.00048483466,0.000025324436,0.00005242512],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99861467,0.00009931354,0.0003087863,0.0005735243,0.000019068306,0.00038463806],"domain_scores_gemma":[0.99953234,0.000011708561,0.00009067634,0.0002332091,0.000026012447,0.0001060667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000913602,0.00022393954,0.00031544795,0.000056929304,0.000037596288,0.000021283275,0.00024798387,0.00053416943,0.00001618584],"category_scores_gemma":[0.000033779586,0.00021607662,0.000061719606,0.00009232669,0.00016708641,0.0000034942316,0.00036954123,0.00016403476,0.000024356144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002681559,0.000019497862,0.0023935398,0.0000188129,0.000029933459,0.000004994448,0.000035933186,0.0000010147655,0.9958802,0.000011639203,0.00035762097,0.00097867],"study_design_scores_gemma":[0.0010080286,0.00027228563,0.0027694835,0.00000493993,0.000010435247,0.000028959646,0.00002254161,0.0000067420387,0.9081465,0.00001748564,0.087467544,0.00024506828],"about_ca_topic_score_codex":0.000013020059,"about_ca_topic_score_gemma":0.00004362786,"teacher_disagreement_score":0.0877337,"about_ca_system_score_codex":0.000009450407,"about_ca_system_score_gemma":0.000038887887,"threshold_uncertainty_score":0.88113487},"labels":[],"label_agreement":null},{"id":"W3010760226","doi":"10.1038/s41467-020-15083-5","title":"The lipoprotein Pal stabilises the bacterial outer membrane during constriction by a mobilisation-and-capture mechanism","year":2020,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Medical Research Council; Francis Crick Institute; Wellcome Trust; Wellcome","keywords":"Mechanism (biology); Bacterial outer membrane; Biophysics; Chemistry; Constriction; Membrane; Cell biology; Biology; Medicine; Biochemistry; Physics; Escherichia coli; Cardiology","score_opus":0.008390212184905491,"score_gpt":0.22408188179745386,"score_spread":0.21569166961254838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010760226","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93192095,0.0064604315,0.000136484,0.06017209,0.00029253663,0.0006287534,0.00014109434,0.00004291945,0.00020472272],"genre_scores_gemma":[0.9945187,0.0038560329,0.00044666097,0.00062758743,0.00020028844,0.00008147978,0.00019816504,0.000014208693,0.000056898658],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992218,0.00014999093,0.00017923077,0.0002182715,0.00008345937,0.00014724021],"domain_scores_gemma":[0.9988217,0.00005550746,0.00009339051,0.00089338823,0.00008653314,0.00004949842],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001378068,0.0001261362,0.00009077796,0.000011072574,0.00058159785,0.000086417094,0.0007160303,0.00043835174,0.000009584595],"category_scores_gemma":[0.0002106496,0.000078966834,0.000050955914,0.00010644022,0.00030546443,0.000004410804,0.0005050005,0.000497298,0.0000025430415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051592015,0.000017894907,0.000036578167,0.0000040153836,0.00003666083,1.2519621e-7,0.00009870334,6.7118236e-7,0.9959091,0.0018012543,0.001019725,0.0010237078],"study_design_scores_gemma":[0.00051907013,0.00012575001,0.00048720374,0.000005212952,0.000039607847,0.000021670925,0.00040761364,0.00011183336,0.62169874,0.00018373142,0.37620935,0.00019024841],"about_ca_topic_score_codex":0.0000170852,"about_ca_topic_score_gemma":0.00021836344,"teacher_disagreement_score":0.37518963,"about_ca_system_score_codex":0.000008204222,"about_ca_system_score_gemma":0.000036501406,"threshold_uncertainty_score":0.44732395},"labels":[],"label_agreement":null},{"id":"W3011797173","doi":"10.1128/mbio.00161-20","title":"Genetic and Chemical-Genetic Interactions Map Biogenesis and Permeability Determinants of the Outer Membrane of Escherichia coli","year":2020,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada; Ontario Research Foundation","keywords":"Bacterial outer membrane; Bacteria; Mutant; Antibiotics; Escherichia coli; Biology; Membrane permeability; Biogenesis; Gene; Antibiotic resistance; Genetics; Microbiology; Genome; Computational biology; Membrane","score_opus":0.010357802398018479,"score_gpt":0.22330932639042742,"score_spread":0.21295152399240894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3011797173","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985738,0.00051842025,0.000024781315,0.0005435291,0.00009550534,0.00016375481,0.000061271734,0.0000043135938,0.000014652888],"genre_scores_gemma":[0.9981049,0.00021379904,0.0014288411,0.0001490569,0.000058579408,0.000006813528,0.000004015245,0.000011531562,0.000022490938],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925804,0.00003802078,0.00024668247,0.00027725418,0.00005578698,0.00012419686],"domain_scores_gemma":[0.9995007,0.000008315099,0.000109833294,0.00027252032,0.000049402035,0.000059224574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036786878,0.00011879292,0.00018629603,0.000013980555,0.000030486586,0.000007733848,0.00016327084,0.0001566608,0.000015384147],"category_scores_gemma":[0.00004838785,0.00009142067,0.000059487375,0.00007265477,0.00032817753,0.0000013985554,0.00029499707,0.000057040757,7.4480056e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000455429,0.000029832328,0.0365235,0.00008204424,0.000023416269,4.3461108e-7,0.00004870713,7.8608514e-7,0.96030855,0.0000018396286,0.000035783443,0.0028995795],"study_design_scores_gemma":[0.00022837058,0.00014786581,0.10259768,0.000009663778,0.000036671187,0.000008569294,0.000025267886,0.00008936273,0.89451814,0.000017223902,0.0022293888,0.00009178365],"about_ca_topic_score_codex":0.00003546601,"about_ca_topic_score_gemma":0.000035261368,"teacher_disagreement_score":0.066074185,"about_ca_system_score_codex":0.0000029723274,"about_ca_system_score_gemma":0.00002707241,"threshold_uncertainty_score":0.37280264},"labels":[],"label_agreement":null},{"id":"W3012560802","doi":"10.1371/journal.pgen.1008275","title":"The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis","year":2020,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Max-Planck-Gesellschaft; Centre National de la Recherche Scientifique; Grantová Agentura České Republiky; Deutsche Forschungsgemeinschaft","keywords":"Stringent response; Bacillus subtilis; Biology; Heat shock; Cell biology; Protein biosynthesis; Ribosome; Translation (biology); Translational regulation; Heat shock protein; Transcription (linguistics); Intracellular; Messenger RNA; Gene; Genetics; Bacteria; RNA; Escherichia coli","score_opus":0.01928728099913578,"score_gpt":0.21077414938445824,"score_spread":0.19148686838532245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3012560802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99208426,0.003076694,0.000013675979,0.004218213,0.00019169081,0.00023292436,0.000115578456,0.000008222321,0.000058761365],"genre_scores_gemma":[0.99780977,0.001434827,0.00012284095,0.00031869413,0.0001711036,0.000009636927,0.000009188788,0.000022978711,0.00010097193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988088,0.00016379038,0.00035080596,0.00026493927,0.00018316381,0.00022851056],"domain_scores_gemma":[0.9988948,0.000039268558,0.00016202664,0.00067826366,0.00015994009,0.000065719694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001509349,0.00015895913,0.00020217549,0.000013793365,0.000095316915,0.000012469514,0.00061065075,0.00024857125,0.000011127874],"category_scores_gemma":[0.00028841384,0.00009996714,0.00013863355,0.00016046329,0.00037455306,8.3589805e-7,0.0004244988,0.00011087091,0.0000031297284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047654368,0.000045820678,0.0027037207,0.000023411041,0.00007470959,6.103897e-7,0.000057043748,0.000049572824,0.99492276,0.000014984297,0.0012084364,0.0004223856],"study_design_scores_gemma":[0.00025359925,0.00047116366,0.0031949345,0.000012825108,0.000041260475,0.0000029131827,0.00011017563,0.00019463881,0.9220267,0.000023801242,0.073558204,0.00010980709],"about_ca_topic_score_codex":0.0000021721962,"about_ca_topic_score_gemma":0.000024204786,"teacher_disagreement_score":0.072896086,"about_ca_system_score_codex":0.0000051575835,"about_ca_system_score_gemma":0.000085963824,"threshold_uncertainty_score":0.40765417},"labels":[],"label_agreement":null},{"id":"W3015272365","doi":"10.3389/fmicb.2020.00546","title":"Iron Limitation in Klebsiella pneumoniae Defines New Roles for Lon Protease in Homeostasis and Degradation by Quantitative Proteomics","year":2020,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Scheme for Promotion of Academic and Research Collaboration; University of Guelph","keywords":"Siderophore; Proteome; Biology; Proteomics; Proteases; Protease; Secretion; Cell biology; Virulence; Quantitative proteomics; Extracellular; Microbiology; Biochemistry; Enzyme; Gene","score_opus":0.011527827924007476,"score_gpt":0.22345316145000216,"score_spread":0.21192533352599469,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3015272365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9826313,0.0036722734,0.009525937,0.0030029537,0.00010247353,0.0009417886,0.00011307137,0.0000067550213,0.0000034094548],"genre_scores_gemma":[0.92326534,0.002128445,0.07267333,0.00044504085,0.000055333654,0.00013178057,0.001230723,0.00002790364,0.00004213705],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891627,0.000085000625,0.000284696,0.00044408106,0.000017144612,0.00025282294],"domain_scores_gemma":[0.99972034,0.000012474933,0.00009966523,0.00009963849,0.000024436387,0.00004346593],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001239404,0.000162397,0.00024326568,0.00011961533,0.000020104486,0.00001343217,0.00012378565,0.00040553568,8.360282e-7],"category_scores_gemma":[0.00016048842,0.00016860572,0.000029091967,0.00014890857,0.000097748045,0.0000056963,0.00006525591,0.00012069749,8.6597055e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044388536,0.00004213123,0.017710567,0.000036496247,0.000009327098,0.0000011128353,0.00014350856,0.000034391076,0.97100544,0.000032990065,0.0028197013,0.0077204574],"study_design_scores_gemma":[0.003404677,0.0016871586,0.0037089712,0.00003906138,0.000014920525,0.0000082246,0.00056540075,0.00069418096,0.9666315,0.0007669352,0.022016807,0.00046216222],"about_ca_topic_score_codex":0.000048684986,"about_ca_topic_score_gemma":0.00044911145,"teacher_disagreement_score":0.06314739,"about_ca_system_score_codex":0.000027441843,"about_ca_system_score_gemma":0.00006305951,"threshold_uncertainty_score":0.6875542},"labels":[],"label_agreement":null},{"id":"W3015664414","doi":"10.1007/s00203-020-01873-4","title":"Effect of changes at the conserved + 3 position of mature archaellins on in vitro cleavage by the pre-archaellin peptidase FlaK of Methanococcus maripaludis","year":2020,"lang":"en","type":"article","venue":"Archives of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Signal peptidase; Signal peptide; Cleavage (geology); Pilin; Biology; Pilus; Biochemistry; Peptide; Amino acid; Conserved sequence; Methanococcus; Peptide sequence; Cell biology; Archaea; Gene; Escherichia coli","score_opus":0.00505928647911438,"score_gpt":0.2162021424195317,"score_spread":0.21114285594041732,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3015664414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945433,0.0013709144,0.000049847025,0.0025095614,0.00004398187,0.00046834076,0.0009439213,0.000002912276,0.000067210996],"genre_scores_gemma":[0.99838084,0.00075802323,0.00014867776,0.00019977383,0.000028864519,0.0000146621105,0.0004114995,0.0000132459,0.000044393997],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998591,0.0005522486,0.00033991793,0.00027936712,0.000038526363,0.00019891578],"domain_scores_gemma":[0.99899155,0.00027122805,0.00031781814,0.00036971245,0.000022290076,0.00002737536],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022936778,0.00017082802,0.00039136296,0.00005264892,0.000024921694,0.0000011290613,0.00043455616,0.00023345432,0.000010082061],"category_scores_gemma":[0.00007606293,0.000102800055,0.00014186332,0.00009079309,0.0011580557,7.827389e-7,0.0003604672,0.00017504628,7.538841e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0046115415,0.00006386631,0.00020195812,0.00016210489,0.00009729471,7.8560157e-7,0.00037412354,0.000013253831,0.9901879,0.00002889255,0.00022092399,0.0040373984],"study_design_scores_gemma":[0.00080501585,0.0036106536,0.0008120467,0.00003403974,0.000034851677,0.000008427226,0.000037930466,0.00001725626,0.99313456,0.000044160013,0.0013752917,0.00008576945],"about_ca_topic_score_codex":0.000065530025,"about_ca_topic_score_gemma":0.00013972278,"teacher_disagreement_score":0.0039516287,"about_ca_system_score_codex":0.0000032992918,"about_ca_system_score_gemma":0.000022958062,"threshold_uncertainty_score":0.4266905},"labels":[],"label_agreement":null},{"id":"W3016540495","doi":"10.1096/fasebj.2020.34.s1.00499","title":"Functional cooperativity between the trigger factor chaperone and the ClpXP proteolytic complex","year":2020,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Chaperone (clinical); Biology; Cell biology; Protein degradation; Proteolysis; Signal transducing adaptor protein; Gene; Biochemistry; Enzyme","score_opus":0.03754574339786598,"score_gpt":0.2349990256290206,"score_spread":0.19745328223115463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016540495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95079374,0.00044171544,0.0012199229,0.047047105,0.00010414192,0.00029134704,0.000032791835,0.000006311617,0.0000629097],"genre_scores_gemma":[0.9964692,0.00024620967,0.00004257411,0.0018485481,0.0012391765,0.000008850894,0.0000142563595,0.000010470793,0.00012070487],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991408,0.00021315328,0.00018223884,0.00015487759,0.00012571379,0.00018322348],"domain_scores_gemma":[0.99953455,0.000043080123,0.000103455146,0.0001892798,0.000058614696,0.00007101314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033608498,0.00012758926,0.0001470407,0.000008705091,0.0004896395,0.00009824124,0.0003044066,0.0001070734,0.00009311555],"category_scores_gemma":[0.00007736502,0.000051731266,0.00007578158,0.000068934,0.0005453191,0.000002327097,0.00018686532,0.00036289648,0.00000982921],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027723284,0.000009948889,0.0006444135,0.0000027481458,0.00010685473,9.805968e-7,0.00010434367,0.000008334835,0.99280304,0.00014471858,0.0012700964,0.0046272734],"study_design_scores_gemma":[0.0050531654,0.001061867,0.073038965,0.000010315107,0.00016269929,0.00038973102,0.0002525844,0.000532124,0.834988,0.00044738353,0.08369548,0.0003676753],"about_ca_topic_score_codex":0.0000039146516,"about_ca_topic_score_gemma":0.000004493982,"teacher_disagreement_score":0.15781504,"about_ca_system_score_codex":0.000005120242,"about_ca_system_score_gemma":0.00005901421,"threshold_uncertainty_score":0.3765961},"labels":[],"label_agreement":null},{"id":"W3017078513","doi":"10.1371/journal.pone.0231085","title":"Expansion of the Transporter-Opsin-G protein-coupled receptor superfamily with five new protein families","year":2020,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Protein family; Endoplasmic reticulum; Protein superfamily; Transport protein; Membrane protein; Biochemistry; Conserved sequence; Genetics; Ras superfamily; Cell biology; Peptide sequence; Gene","score_opus":0.01681402772988469,"score_gpt":0.17933220452181284,"score_spread":0.16251817679192815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3017078513","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99614286,0.00019790886,0.000121556455,0.0024588034,0.00001833346,0.0009474758,0.00003637682,0.000020854042,0.000055856617],"genre_scores_gemma":[0.9941554,0.00007432774,0.004671846,0.00022571307,0.00016974725,0.00004526087,0.000045470537,0.000027945123,0.0005842638],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903923,0.000030463518,0.00021508025,0.00033266874,0.00018852964,0.00019401734],"domain_scores_gemma":[0.9993716,0.0000020897216,0.00009765585,0.00035770467,0.00009104407,0.0000799151],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003965867,0.0001694516,0.00023005629,0.000017092716,0.00004631421,0.000009747886,0.0003011522,0.00022921285,0.000037638514],"category_scores_gemma":[0.00003476763,0.00011373899,0.000064354565,0.00015106171,0.00014165144,0.0000027551714,0.00008060232,0.00013258497,0.000005652295],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041074224,0.00016206907,0.000309923,0.00007170766,0.00011511382,7.312706e-7,0.00012967209,0.000002416923,0.99812233,0.000017672604,0.000056549172,0.00060105266],"study_design_scores_gemma":[0.0007012942,0.0014289584,0.00079903536,0.00012054691,0.000049866303,7.526926e-7,0.000097065575,0.000027761283,0.9955816,0.000013696692,0.0010149139,0.00016447448],"about_ca_topic_score_codex":0.00006477635,"about_ca_topic_score_gemma":0.000041476378,"teacher_disagreement_score":0.00455029,"about_ca_system_score_codex":0.0000051626484,"about_ca_system_score_gemma":0.00015279124,"threshold_uncertainty_score":0.46381417},"labels":[],"label_agreement":null},{"id":"W3019934757","doi":"10.1371/journal.pgen.1008750","title":"ArdC, a ssDNA-binding protein with a metalloprotease domain, overpasses the recipient hsdRMS restriction system broadening conjugation host range","year":2020,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministerio de Asuntos Económicos y Transformación Digital, Gobierno de España; University of British Columbia; Ministerio de Educación, Cultura y Deporte","keywords":"Plasmid; Pseudomonas putida; Biology; Escherichia coli; Bacterial conjugation; Metalloproteinase; Cell biology; Function (biology); DNA; Genetics; Bacteria; Gene; Matrix metalloproteinase","score_opus":0.015114335603426236,"score_gpt":0.20196944567389047,"score_spread":0.18685511007046424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3019934757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943111,0.00045519014,0.0016274516,0.0019199238,0.00011412065,0.0012443679,0.00005721946,0.00007111643,0.00019953682],"genre_scores_gemma":[0.9956693,0.00019283024,0.0030164109,0.00024733777,0.00048513015,0.00020365414,0.000081889986,0.000052720377,0.000050715826],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983404,0.00012955889,0.00033446442,0.00054909557,0.00029403565,0.0003523916],"domain_scores_gemma":[0.99900556,0.000009372412,0.00025075075,0.00045330054,0.00014576102,0.00013527929],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014199702,0.0002783658,0.00023761543,0.00004848184,0.00021898559,0.00010256292,0.00032977815,0.0003030779,0.0000078243265],"category_scores_gemma":[0.00007022978,0.00019995545,0.00008529297,0.00028335172,0.00013271412,0.000005260916,0.0001939564,0.00022026656,0.000017280687],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029319068,0.000046600497,0.00054138195,0.00008039687,0.0001424829,0.000010920075,0.00009181282,0.00003957683,0.9983168,0.00018616793,0.00011728099,0.00013333718],"study_design_scores_gemma":[0.0009199054,0.0012670994,0.00036694983,0.00008827098,0.00012357683,0.000025187152,0.000411102,0.00039064232,0.9821706,0.000016830583,0.013879019,0.00034083976],"about_ca_topic_score_codex":0.0000060820803,"about_ca_topic_score_gemma":0.000017595401,"teacher_disagreement_score":0.016146274,"about_ca_system_score_codex":0.00004158388,"about_ca_system_score_gemma":0.00009783046,"threshold_uncertainty_score":0.81539464},"labels":[],"label_agreement":null},{"id":"W3021368626","doi":"10.1186/s12866-020-01796-6","title":"Low phosphatase activity of LiaS and strong LiaR-DNA affinity explain the unusual LiaS to LiaR in vivo stoichiometry","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dello Sviluppo Economico; Deutsche Forschungsgemeinschaft; York University","keywords":"Phosphorylation; Biology; Phosphatase; In vivo; Biophysics; Cell biology; Biochemistry; Genetics","score_opus":0.01526984025883614,"score_gpt":0.23537988478040142,"score_spread":0.2201100445215653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021368626","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969922,0.00062420295,0.00035283237,0.0009784838,0.00018593839,0.00034938022,0.00046553643,0.000012813122,0.000038624283],"genre_scores_gemma":[0.9981707,0.00018138725,0.0006864335,0.00065925636,0.000152513,0.000016325652,0.00007096381,0.000020103622,0.000042314274],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99855494,0.00019148884,0.00029120993,0.00055156456,0.00003795029,0.000372851],"domain_scores_gemma":[0.9992778,0.000052594325,0.00013181983,0.00038430278,0.000043164713,0.00011031863],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024043686,0.00023577372,0.0003387285,0.0000813084,0.00005708477,0.000014529656,0.000389806,0.00046240105,0.000037216687],"category_scores_gemma":[0.00023214263,0.0001896444,0.000075707474,0.0002887392,0.0002768339,0.0000035596445,0.0005940172,0.00021323076,0.00000925718],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046184086,0.0001024174,0.0020119855,0.00003813733,0.000031209787,0.0000026021453,0.000088966844,0.000016433849,0.99465674,0.0000919896,0.0010749425,0.0014227411],"study_design_scores_gemma":[0.00067883765,0.0008867948,0.0030037896,0.000012020159,0.000013674578,0.000016168098,0.00010978059,0.000016532726,0.9763843,0.0000090807,0.01865878,0.00021025121],"about_ca_topic_score_codex":0.000055918976,"about_ca_topic_score_gemma":0.00057856145,"teacher_disagreement_score":0.018272443,"about_ca_system_score_codex":0.000012499543,"about_ca_system_score_gemma":0.000099666955,"threshold_uncertainty_score":0.7733474},"labels":[],"label_agreement":null},{"id":"W3021555428","doi":"10.1111/j.1574-6968.2002.tb11251.x","title":"Role of the<i>Pseudomonas aeruginosa las</i>and<i>rhl</i>quorum-sensing systems in<i>rhlI</i>regulation","year":2002,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Federation of European Microbiological Societies; National Institute for Health and Care Research; National Institutes of Health; Cystic Fibrosis Foundation","keywords":"Quorum sensing; Pseudomonas aeruginosa; Biology; Regulator; Population; Regulation of gene expression; Gene; Virulence; Cell biology; Genetics; Bacteria; Medicine","score_opus":0.00466159880881487,"score_gpt":0.16855996042474497,"score_spread":0.1638983616159301,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021555428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947817,0.0025640004,0.000037461385,0.0016985504,0.00049238413,0.00026209062,0.00003190926,0.000013257149,0.00011869199],"genre_scores_gemma":[0.998257,0.00024022853,0.00023730265,0.0009729702,0.00014989713,0.000005357748,0.000042490607,0.000020085734,0.00007467415],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874955,0.00013398893,0.0003443663,0.0003947363,0.000040004565,0.00033737684],"domain_scores_gemma":[0.99932253,0.000015663032,0.00018047681,0.00041457204,0.000035065295,0.00003171276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013547232,0.00020001829,0.00025264962,0.00007773128,0.00006838699,0.0000150858,0.00023501301,0.00039043667,0.000007756343],"category_scores_gemma":[0.00002500698,0.00016421726,0.00008291398,0.00013570744,0.00038301453,0.0000033499705,0.00021060919,0.00016629155,0.00000769283],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018624007,0.000023895025,0.0029683209,0.000011875262,0.000029125082,0.0000012109653,0.00004742216,0.000069841684,0.99411535,0.000045750552,0.0010785417,0.0015900556],"study_design_scores_gemma":[0.0006660447,0.00010698374,0.007719917,0.000045561996,0.000020522015,0.00017072799,0.000047731206,0.00015251496,0.91186476,0.000025860427,0.07890855,0.0002708318],"about_ca_topic_score_codex":0.000067008994,"about_ca_topic_score_gemma":0.00006532972,"teacher_disagreement_score":0.08225058,"about_ca_system_score_codex":0.000016243543,"about_ca_system_score_gemma":0.000010917073,"threshold_uncertainty_score":0.66965854},"labels":[],"label_agreement":null},{"id":"W3021852814","doi":"10.1101/2020.05.01.072959","title":"<i>Actinobacillus</i> utilizes a binding-protein dependent ABC transporter to acquire Vitamin B <sub>6</sub>","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Hospital for Sick Children; Keio University","keywords":"Operon; Periplasmic space; ATP-binding cassette transporter; Biochemistry; Chemistry; Permease; Isothermal titration calorimetry; Transport protein; Bacterial outer membrane; Biology; Escherichia coli; Transporter; Gene","score_opus":0.010465170732705534,"score_gpt":0.20224682144331702,"score_spread":0.19178165071061148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021852814","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932138,0.00042174506,0.0014412496,0.0011312007,0.0011190668,0.0013513004,0.0010752501,0.00023811853,0.0000082769],"genre_scores_gemma":[0.99493545,0.00044834605,0.0024338134,0.000671906,0.0009028524,0.00035934817,0.000010933322,0.00022715908,0.000010182492],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99569494,0.00012157088,0.0007558903,0.0020841488,0.00040595295,0.00093751063],"domain_scores_gemma":[0.99701166,0.000008831711,0.00039232388,0.001703105,0.00031453738,0.0005695279],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00033261694,0.00095608697,0.00078702904,0.00023266663,0.00017868425,0.00020237475,0.0011220989,0.0019026629,0.000019847064],"category_scores_gemma":[0.00012548368,0.001041831,0.00034213002,0.00040593054,0.00018636479,0.000009149805,0.001107183,0.0007843637,0.00015028022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019566095,0.00012741945,0.00033479612,0.0002104193,0.0002432982,0.00008098016,0.0000060346288,0.000008742932,0.9982778,0.000045151966,0.000432193,0.00003750335],"study_design_scores_gemma":[0.000631398,0.00039000178,0.0028320567,0.00017793576,0.00012083432,1.1377962e-7,0.0000041490443,0.000010158342,0.97704643,0.0000015623219,0.017617509,0.0011678253],"about_ca_topic_score_codex":0.00001795349,"about_ca_topic_score_gemma":0.000020745256,"teacher_disagreement_score":0.021231344,"about_ca_system_score_codex":0.00010975467,"about_ca_system_score_gemma":0.00050452864,"threshold_uncertainty_score":0.9993931},"labels":[],"label_agreement":null},{"id":"W3025162606","doi":"10.1101/2020.05.12.089201","title":"Structures of the stator complex that drives rotation of the bacterial flagellum","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University","funders":"Biotechnology and Biological Sciences Research Council; Engineering and Physical Sciences Research Council; Canadian Institutes of Health Research; Medical Research Council; Wolfson Foundation; Wellcome Trust","keywords":"Flagellum; Stator; Rotor (electric); Propeller; Rotation (mathematics); Protein subunit; Torque; Membrane; Physics; Chemistry; Biophysics; Biology; Engineering; Computer science; Biochemistry","score_opus":0.014920140596016675,"score_gpt":0.21218779237711186,"score_spread":0.19726765178109518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3025162606","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962265,0.00020640816,0.00016671258,0.000553156,0.0015458631,0.0005992284,0.0006778783,0.000020815876,0.0000034448885],"genre_scores_gemma":[0.99794465,0.00014299095,0.0013265905,0.00011019433,0.0003963671,0.000022808343,0.0000024233905,0.000051386538,0.000002607871],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99838877,0.00017622688,0.00041990555,0.0005413384,0.00023363356,0.00024015168],"domain_scores_gemma":[0.99771535,0.000010563885,0.0007265312,0.0012491869,0.00023545373,0.0000628978],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013138355,0.00032730517,0.00037992204,0.00004038948,0.00008790428,0.00004047839,0.0010545027,0.0006505705,0.000026727746],"category_scores_gemma":[0.0001424004,0.00022777935,0.00023887903,0.0001787014,0.00042302377,0.000002985697,0.0013682508,0.00032408448,0.0000010589561],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006029668,0.000029430706,0.0024112174,0.00015174848,0.00012519087,4.2904333e-7,0.000007689525,0.000018307039,0.9967015,0.00023428084,0.00025666395,0.0000032710434],"study_design_scores_gemma":[0.00027213726,0.00005680253,0.16313796,0.00005046727,0.00006334876,1.171068e-8,0.000003938428,0.00001820319,0.8301155,0.000011263371,0.0060678227,0.0002025325],"about_ca_topic_score_codex":0.000023057553,"about_ca_topic_score_gemma":0.000009379075,"teacher_disagreement_score":0.16658595,"about_ca_system_score_codex":0.000021907344,"about_ca_system_score_gemma":0.0003804686,"threshold_uncertainty_score":0.92885727},"labels":[],"label_agreement":null},{"id":"W3028499637","doi":"10.1128/msystems.00204-20","title":"Overexpression of the Small RNA PA0805.1 in Pseudomonas aeruginosa Modulates the Expression of a Large Set of Genes and Proteins, Resulting in Altered Motility, Cytotoxicity, and Tobramycin Resistance","year":2020,"lang":"en","type":"article","venue":"mSystems","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Pseudomonas aeruginosa; Biology; Tobramycin; Transcriptome; Gene; Virulence; Efflux; Microbiology; Small RNA; Swarming motility; Multiple drug resistance; Genetics; Gene expression; Quorum sensing; Drug resistance; Bacteria","score_opus":0.01582258569981156,"score_gpt":0.22878580668294046,"score_spread":0.2129632209831289,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3028499637","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99725044,0.0017061129,0.000020772977,0.00032811903,0.00002748515,0.0005448024,0.00009661547,0.000002701754,0.000022975937],"genre_scores_gemma":[0.999513,0.00018775156,0.00019765903,0.000020847103,0.00004353899,0.000011193995,0.0000079278125,0.000008635411,0.000009461746],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988685,0.00019911639,0.00042737502,0.00026633573,0.000094781666,0.00014386603],"domain_scores_gemma":[0.9993344,0.00002214507,0.00027499892,0.0003067858,0.00003632307,0.00002535985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032633622,0.00011566213,0.0002500928,0.00002679077,0.000028752685,0.0000072030925,0.00021822505,0.0001989324,6.369217e-7],"category_scores_gemma":[0.00012270093,0.00007182536,0.000035517038,0.00011692188,0.00011819212,0.0000026402518,0.00046046556,0.00009879411,2.7620768e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017360195,0.000028154502,0.023612503,0.00035075855,0.000006045635,3.8526605e-7,0.00032300194,0.000023128056,0.9753129,0.000029966306,0.000013351857,0.00012621003],"study_design_scores_gemma":[0.0006944547,0.00010497356,0.024670841,0.00044017713,0.000003449934,0.0000015415401,0.00022863083,0.0002795983,0.97329354,0.000043592976,0.00017435118,0.0000648667],"about_ca_topic_score_codex":0.00015247978,"about_ca_topic_score_gemma":0.00036742105,"teacher_disagreement_score":0.00226257,"about_ca_system_score_codex":0.000004278038,"about_ca_system_score_gemma":0.00002217623,"threshold_uncertainty_score":0.29289532},"labels":[],"label_agreement":null},{"id":"W3033047317","doi":"10.1016/b978-0-12-818322-9.00021-6","title":"The secretomes of extremophiles","year":2020,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Laurentian University","funders":"","keywords":"Archaea; Bacteria; Extremophile; Biology; Biochemistry; Thermophile; Genetics","score_opus":0.010211471551448192,"score_gpt":0.21280518445268481,"score_spread":0.20259371290123662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033047317","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015605409,0.0062154653,0.0000026659611,0.0004354867,0.00037037305,0.0002975989,0.0000918332,0.000016550179,0.9910095],"genre_scores_gemma":[0.031823892,0.0029351355,0.00019248245,0.00022452319,0.0007596554,0.000011593187,0.00010072386,0.00007703722,0.96387494],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99899775,0.0000160744,0.00032914506,0.00035534397,0.00012621864,0.00017545935],"domain_scores_gemma":[0.9990168,0.000012752883,0.0002457362,0.00058294897,0.000080840065,0.000060909555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000085828404,0.00026796508,0.0002936305,0.000028103274,0.00007698346,0.000018928462,0.00044976623,0.0006119691,0.000024960418],"category_scores_gemma":[0.000023874098,0.0001924513,0.00021863807,0.0000073794263,0.00036827743,3.2364701e-7,0.0003367167,0.00021071233,0.000019564748],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004878692,0.000002599398,0.000001989534,0.000030512327,0.0001534102,0.000003687141,0.000009535559,9.503579e-8,0.1651124,0.0046625086,0.00046578117,0.8295087],"study_design_scores_gemma":[0.00011482003,0.00021916909,0.000008973595,0.000035936147,0.00004545667,0.000009142052,0.000003903377,7.2530037e-7,0.0540299,0.0041019116,0.9412259,0.00020418137],"about_ca_topic_score_codex":1.427406e-7,"about_ca_topic_score_gemma":0.000010178243,"teacher_disagreement_score":0.9407601,"about_ca_system_score_codex":0.0000061178116,"about_ca_system_score_gemma":0.000097881326,"threshold_uncertainty_score":0.7847936},"labels":[],"label_agreement":null},{"id":"W3033751668","doi":"10.1002/cbic.202000280","title":"An Effective Method for Quantifying RNA Expression of IbsC‐SibC, a Type I Toxin‐Antitoxin System in <i>Escherichia coli</i>","year":2020,"lang":"en","type":"article","venue":"ChemBioChem","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Antitoxin; RNA; Escherichia coli; Biology; Toxin; Transcription (linguistics); Gene; Gene expression; Small RNA; Messenger RNA; Non-coding RNA; Molecular biology; Genetics","score_opus":0.0196618277897212,"score_gpt":0.2901046766921916,"score_spread":0.2704428489024704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033751668","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902181,0.00052526646,0.008152785,0.00010434306,0.00017912635,0.0005996693,0.000035997477,0.00003089823,0.00015379525],"genre_scores_gemma":[0.97792244,0.00004415226,0.02141986,0.00016692413,0.0002327886,0.00006299098,0.000101340855,0.00003682204,0.000012664584],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874467,0.00007486704,0.00031032448,0.0005221322,0.000083553656,0.0002644433],"domain_scores_gemma":[0.9992604,0.000023462295,0.00015651167,0.0003414965,0.000115921895,0.000102207676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023652302,0.00020366897,0.0003436301,0.00003807031,0.00003737634,0.000016084861,0.0003036195,0.0004542592,0.00000391084],"category_scores_gemma":[0.00012664137,0.00019687078,0.000099017896,0.00022240408,0.00005351201,0.000004245842,0.00012583214,0.00011981235,0.0000023196255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005140922,0.00007948986,0.00012905127,0.00029737325,0.000024918701,0.0000014848104,0.00008973483,0.000015232022,0.9969188,0.00009931175,0.00020907371,0.0016214357],"study_design_scores_gemma":[0.0009830425,0.0009539117,0.00021461995,0.00006697861,0.000021856462,0.0000022773515,0.00022782444,0.00074981694,0.9940536,0.000009681646,0.0024899144,0.00022649905],"about_ca_topic_score_codex":0.000015369475,"about_ca_topic_score_gemma":0.0000077986215,"teacher_disagreement_score":0.013267076,"about_ca_system_score_codex":0.00001737918,"about_ca_system_score_gemma":0.000053880452,"threshold_uncertainty_score":0.80281574},"labels":[],"label_agreement":null},{"id":"W3036081194","doi":"10.1139/w01-088","title":"Molecular analysis of the<i>Pseudomonas aeruginosa</i>regulatory genes<i>ptxR</i>and<i>ptxS</i>","year":2001,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pseudomonas putida; Pseudomonas fluorescens; Operon; Biology; Southern blot; Microbiology; Pseudomonas aeruginosa; Plasmid; Hybridization probe; Molecular biology; Gene; Genetics; Bacteria; Escherichia coli","score_opus":0.004166261677425876,"score_gpt":0.1830189487669316,"score_spread":0.17885268708950572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3036081194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901862,0.008268862,0.000114148184,0.0007251898,0.00044930633,0.00007775762,0.00006939339,0.000001675855,0.000107442465],"genre_scores_gemma":[0.9983139,0.000561726,0.00018347843,0.00072243356,0.000109065186,0.0000010747983,0.00002346009,0.000014808892,0.0000700245],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883723,0.00011661816,0.00044360163,0.00022361208,0.00004372289,0.0003352241],"domain_scores_gemma":[0.99883306,0.000008344801,0.00034315855,0.00040387062,0.00020266681,0.00020888739],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023583899,0.00017196398,0.00038870345,0.00031755125,0.00007665171,0.00001223682,0.0004815976,0.00038631307,0.000035916946],"category_scores_gemma":[0.000048001093,0.00013491052,0.00030816832,0.00041259665,0.0005284827,0.000002669565,0.000083139515,0.000169103,0.0000011205229],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002847802,0.000011777338,0.018073445,0.0000042607207,0.0005983592,0.000025363348,0.000020376601,0.000115685056,0.97915584,0.00010317991,0.00048862543,0.0013745996],"study_design_scores_gemma":[0.00046607447,0.00026573704,0.013092071,0.000013858816,0.0005144618,0.0009052332,0.00003496219,0.000004994182,0.79027003,0.000055592565,0.19418292,0.00019405065],"about_ca_topic_score_codex":0.0003556672,"about_ca_topic_score_gemma":0.007722603,"teacher_disagreement_score":0.1936943,"about_ca_system_score_codex":0.000024656285,"about_ca_system_score_gemma":0.0005139561,"threshold_uncertainty_score":0.5501491},"labels":[],"label_agreement":null},{"id":"W3041989173","doi":"10.1103/physrevlett.125.028103","title":"Ribosome Composition Maximizes Cellular Growth Rates in <i>E. coli</i>","year":2020,"lang":"en","type":"article","venue":"Physical Review Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Tel Aviv University; Azrieli Foundation; Israel Science Foundation","keywords":"Composition (language); Ribosome; Physics; Computer science; Biology; RNA; Genetics; Gene","score_opus":0.010642926051022253,"score_gpt":0.24091052492701334,"score_spread":0.23026759887599108,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3041989173","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95440745,0.0043148883,0.00020623702,0.040695444,0.000050381557,0.00025517103,0.000012550609,0.000014684845,0.00004321014],"genre_scores_gemma":[0.95017016,0.0071939016,0.00018454832,0.041981705,0.0002982238,0.000025966714,0.00012913626,0.000014732453,0.000001628165],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991859,0.00006839391,0.00017806247,0.0003028588,0.000077357574,0.00018742024],"domain_scores_gemma":[0.99969053,0.0000072951702,0.00005836217,0.0001527513,0.000022395754,0.000068675035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004950712,0.00014179204,0.00025568792,0.0000131538345,0.000022173343,0.000012204837,0.00018292495,0.000032916647,0.000008567147],"category_scores_gemma":[0.000024616182,0.00012694624,0.00010517356,0.00014465477,0.000069935755,0.0000027356743,0.00009259538,0.00011189791,0.00003865887],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024168252,0.000045270306,0.00012347256,0.0002076438,0.000011622961,0.0000050573126,0.000006758098,0.000006759766,0.9965058,0.00009423746,0.0027650096,0.00020421846],"study_design_scores_gemma":[0.00042911436,0.00017076303,0.0006921951,0.00017337015,0.000032067608,0.0000020441155,0.0000021541443,0.00010697263,0.96739846,0.000081695944,0.030655582,0.00025556807],"about_ca_topic_score_codex":0.000004407086,"about_ca_topic_score_gemma":9.171967e-7,"teacher_disagreement_score":0.029107308,"about_ca_system_score_codex":0.0000068411396,"about_ca_system_score_gemma":0.0000105301215,"threshold_uncertainty_score":0.51767176},"labels":[],"label_agreement":null},{"id":"W3042509581","doi":"10.1101/2020.07.15.203992","title":"An experimentally evolved variant of RsmA confirms its central role in the control of <i>Pseudomonas aeruginosa</i> social motility","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Swarming motility; Swarming (honey bee); Mutant; Biology; Virulence; Gene; Pseudomonas aeruginosa; Repressor; Regulator; Cell biology; Phenotype; Motility; Genetics; Gene expression; Bacteria; Microbiology; Quorum sensing","score_opus":0.01014875190744835,"score_gpt":0.2194960586178276,"score_spread":0.20934730671037924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3042509581","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961636,0.0010125376,0.000508824,0.00035284448,0.00034238573,0.00079664344,0.0007872334,0.00002786511,0.000008071959],"genre_scores_gemma":[0.9985407,0.00014610538,0.0005756379,0.00022470225,0.00038213082,0.00007538459,0.0000056170784,0.00004940985,2.8801725e-7],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975139,0.00030311043,0.0006738492,0.00079667335,0.0002579392,0.00045452642],"domain_scores_gemma":[0.9982098,0.000014049197,0.00050778256,0.0008964641,0.0002563105,0.00011562056],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004178921,0.00041553477,0.000633542,0.00007021272,0.00005978839,0.000044060886,0.0010238363,0.00094580837,0.000016103277],"category_scores_gemma":[0.00007447452,0.0003768335,0.00020518426,0.0001908638,0.0002688098,0.000005983901,0.0003391049,0.0004339802,0.0000014997586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023333037,0.00038974526,0.002462576,0.000117842246,0.00013466463,0.000012615891,0.000046896064,0.00001842458,0.99610865,0.00044299068,0.000028058334,0.000004225597],"study_design_scores_gemma":[0.0010597407,0.00033070034,0.073814265,0.000032847805,0.00006748594,4.1994245e-8,0.000029181776,0.00024442232,0.9232717,0.000003726523,0.0008396147,0.00030625638],"about_ca_topic_score_codex":0.0000855449,"about_ca_topic_score_gemma":0.000010201899,"teacher_disagreement_score":0.07283691,"about_ca_system_score_codex":0.000037047485,"about_ca_system_score_gemma":0.00044240788,"threshold_uncertainty_score":0.99986833},"labels":[],"label_agreement":null},{"id":"W3043072124","doi":"10.1128/jb.00347-20","title":"Identification of the Pseudomonas aeruginosa O17 and O15 O-Specific Antigen Biosynthesis Loci Reveals an ABC Transporter-Dependent Synthesis Pathway and Mechanisms of Genetic Diversity","year":2020,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Biology; Pseudomonas aeruginosa; Biosynthesis; ATP-binding cassette transporter; Genetics; Identification (biology); Gene; Transporter; Computational biology; Microbiology; Bacteria","score_opus":0.013193084696218793,"score_gpt":0.20131142715789524,"score_spread":0.18811834246167644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3043072124","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967844,0.0006226421,0.0016120991,0.0006180811,0.00014120711,0.0001317734,0.00008404986,0.0000035343771,0.000002203968],"genre_scores_gemma":[0.9969836,0.002087646,0.00074062264,0.00007547343,0.00009140627,0.0000012945605,0.0000031661489,0.00001441261,0.000002365575],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986437,0.00018582847,0.0006389668,0.00026448045,0.000117356445,0.000149671],"domain_scores_gemma":[0.998704,0.000028418981,0.0007642518,0.00026419945,0.00014423906,0.00009486724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032182373,0.00015303594,0.00040830913,0.000048665395,0.00008266097,0.000011318248,0.00036440822,0.000307446,0.0000147298115],"category_scores_gemma":[0.0000766835,0.000115931376,0.00011626134,0.00007158965,0.00030422842,0.000008577915,0.00021823477,0.000114246584,3.4429564e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025994465,0.000049202787,0.0121472,0.000033935943,0.00009473712,0.000005042993,0.00012830672,0.000004020096,0.9819834,0.00005512921,0.00000845715,0.0052306177],"study_design_scores_gemma":[0.0002597727,0.0006797155,0.22741537,0.000014730174,0.000060126513,0.00007966369,0.00011757463,0.0000063365533,0.7708086,0.00023384285,0.00022730553,0.0000969898],"about_ca_topic_score_codex":0.000012812327,"about_ca_topic_score_gemma":0.000012588177,"teacher_disagreement_score":0.21526816,"about_ca_system_score_codex":0.0000066459806,"about_ca_system_score_gemma":0.000035665154,"threshold_uncertainty_score":0.47275442},"labels":[],"label_agreement":null},{"id":"W3045476890","doi":"10.1128/iai.00303-20","title":"The <i>Salmonella</i> LysR Family Regulator RipR Activates the SPI-13-Encoded Itaconate Degradation Cluster","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Operon; Biology; Isocitrate lyase; Glyoxylate cycle; Escherichia coli; Phagosome; Bacteria; Salmonella; Microbiology; lac operon; Biochemistry; Metabolite; Enterobacteriaceae; Gene; Enzyme; Phagocytosis; Genetics","score_opus":0.011921384360604817,"score_gpt":0.21836023601617863,"score_spread":0.2064388516555738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3045476890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99412835,0.00049681944,0.00031927816,0.0040726536,0.00026392238,0.00017763281,0.000006002451,0.00002608609,0.00050925306],"genre_scores_gemma":[0.99618846,0.0020249945,0.00002840888,0.0013538225,0.00016394311,0.000012773772,0.000035309557,0.000011393398,0.00018086594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993191,0.00013676743,0.00015733464,0.00017735563,0.000059940114,0.00014952531],"domain_scores_gemma":[0.99951094,0.000024711595,0.00008537322,0.00026784954,0.00006670035,0.00004443339],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019590417,0.00012229919,0.00008649073,0.000012689078,0.00046079315,0.00008525616,0.00014441772,0.00018402406,0.0000052707574],"category_scores_gemma":[0.000099538236,0.00007402029,0.000053205138,0.00010450596,0.00018209778,0.0000061905853,0.00018072172,0.0001955996,0.000007657207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000101567886,0.000016239259,0.0009894092,0.000004799699,0.000037086804,1.0796934e-7,0.00003730017,0.000009821785,0.98691756,0.000074400195,0.0012849264,0.0105267605],"study_design_scores_gemma":[0.00043685813,0.00032417232,0.03142999,0.0000040247055,0.000020303583,0.000010770015,0.00011246359,0.00027584654,0.71299803,0.00015364005,0.25408766,0.00014623482],"about_ca_topic_score_codex":0.00015931763,"about_ca_topic_score_gemma":0.0000782834,"teacher_disagreement_score":0.27391955,"about_ca_system_score_codex":0.0000066104903,"about_ca_system_score_gemma":0.00002466146,"threshold_uncertainty_score":0.3544095},"labels":[],"label_agreement":null},{"id":"W3048012543","doi":"10.1139/cjm-2020-0022","title":"CcpN: a moonlighting protein regulating catabolite repression of gluconeogenic genes in <i>Bacillus subtilis</i> also affects cell length and interacts with DivIVA","year":2020,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Regina; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; University of Regina","keywords":"Bacillus subtilis; Catabolite repression; Repressor; Biology; Psychological repression; Transcription (linguistics); Gene; Promoter; Cell biology; Regulation of gene expression; Gene expression; Biochemistry; Molecular biology; Genetics; Bacteria; Mutant","score_opus":0.005705125732856539,"score_gpt":0.18131140465587026,"score_spread":0.17560627892301373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048012543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935821,0.0053987866,0.000031298674,0.0006515308,0.000081523576,0.0001696206,0.000043776592,0.000001969481,0.000039382],"genre_scores_gemma":[0.9983684,0.00015679045,0.0010888011,0.00019717346,0.00012229427,0.0000018620796,0.000030025456,0.000018047735,0.00001661201],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890786,0.00011432096,0.00037003442,0.000273248,0.000028157778,0.00030634744],"domain_scores_gemma":[0.9990949,0.000013910752,0.00037869613,0.00016546827,0.00012642374,0.00022059087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018053484,0.00016396183,0.00033304328,0.00011866628,0.000041833704,0.000013723403,0.00021692779,0.0002784418,0.000008013554],"category_scores_gemma":[0.000116667994,0.00013463628,0.00005167303,0.00011477332,0.00018960942,0.0000060376415,0.00007725682,0.00021149806,4.6057562e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015780044,0.000010571078,0.0041532908,0.000050075276,0.00002853515,0.00004407152,0.0001850847,0.000028925417,0.9926746,0.0000053402496,0.000055086704,0.0026066394],"study_design_scores_gemma":[0.0009054541,0.00086932455,0.0011501131,0.000111914516,0.000016604787,0.00036584618,0.00013328188,0.000009767995,0.98817414,0.0000057333887,0.008106918,0.0001509233],"about_ca_topic_score_codex":0.00038517345,"about_ca_topic_score_gemma":0.0041966774,"teacher_disagreement_score":0.008051831,"about_ca_system_score_codex":0.000016996513,"about_ca_system_score_gemma":0.00037637312,"threshold_uncertainty_score":0.54903084},"labels":[],"label_agreement":null},{"id":"W3048402996","doi":"10.1016/j.cub.2020.07.063","title":"A Division of Labor in the Recruitment and Topological Organization of a Bacterial Morphogenic Complex","year":2020,"lang":"en","type":"article","venue":"Current Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; FtsZ; Stalk; Cell division; Peptidoglycan; Cell biology; Cytoskeleton; Morphogen; Cell wall; Cell; Biochemistry; Gene","score_opus":0.07295374705966894,"score_gpt":0.31057713654731983,"score_spread":0.23762338948765088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048402996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99783355,0.00063822843,0.00018334373,0.0009268858,0.00011641395,0.00022520864,0.00006456181,0.0000029083067,0.000008898765],"genre_scores_gemma":[0.99854475,0.00082625553,0.00014648358,0.000111473506,0.00007718733,0.000006936734,0.0002824797,0.0000039516976,5.0475853e-7],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936825,0.00010772146,0.00020887802,0.00018717855,0.000028922424,0.00009905206],"domain_scores_gemma":[0.9997105,0.000011325572,0.000092890965,0.00011930292,0.00004511285,0.000020857864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000086208966,0.00007697598,0.00015356488,0.000020421867,0.000014072225,0.0000028382713,0.00015994684,0.00015055334,0.000040092567],"category_scores_gemma":[0.000107564534,0.00005108299,0.000023031027,0.00012895164,0.00017509432,7.563211e-7,0.0001633911,0.000055886692,7.1789054e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046768542,0.00005946875,0.016945923,0.000015605463,0.000008169998,1.8028827e-7,0.00006977577,5.465835e-7,0.97423077,0.0007287666,0.00007242735,0.007821603],"study_design_scores_gemma":[0.0015287098,0.0026283006,0.18497121,0.000014676267,0.000025747597,0.0000090164995,0.00014206443,0.00004228182,0.73542994,0.0002991448,0.074707046,0.00020185577],"about_ca_topic_score_codex":0.000005469681,"about_ca_topic_score_gemma":0.000005780449,"teacher_disagreement_score":0.23880082,"about_ca_system_score_codex":0.0000021841079,"about_ca_system_score_gemma":0.000024477553,"threshold_uncertainty_score":0.2083104},"labels":[],"label_agreement":null},{"id":"W3049666843","doi":"10.1101/2020.08.17.254201","title":"Structure of the extracellular region of the bacterial type VIIb secretion system subunit EsaA","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Argonne National Laboratory; Natural Sciences and Engineering Research Council of Canada; Office of Science; McMaster University; U.S. Department of Energy","keywords":"Peptidoglycan; Biology; Secretion; Firmicutes; Effector; Bacteria; Protein subunit; Extracellular; Cell envelope; Microbiology; Bacterial cell structure; Cell biology; Genetics; Biochemistry; Escherichia coli; Gene","score_opus":0.0096621218903114,"score_gpt":0.18744911466245842,"score_spread":0.17778699277214702,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3049666843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99522537,0.0008225316,0.00015577562,0.00025555983,0.0026501273,0.00058584893,0.0002716147,0.00003029403,0.000002904392],"genre_scores_gemma":[0.9988003,0.00016924781,0.00029979995,0.00003195256,0.0006220459,0.000008881375,0.0000022091128,0.000060759907,0.0000048266425],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982736,0.00021125855,0.0004861047,0.0005733292,0.00021561829,0.00024009657],"domain_scores_gemma":[0.9971945,0.000006591019,0.00076820626,0.0015691068,0.00039580517,0.00006574523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013446638,0.0003409523,0.00039495697,0.00004414188,0.00008572798,0.000032729473,0.0009981439,0.001159984,0.000009633497],"category_scores_gemma":[0.00012469121,0.00024214954,0.00021600079,0.00030943376,0.00025848649,0.0000027273547,0.0010803865,0.00045168868,0.0000013062494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000101515136,0.000022646103,0.0009926613,0.00039423033,0.00010685012,0.0000019889944,0.000003763866,0.000018221053,0.99790865,0.00036067056,0.00008677554,0.0000020204784],"study_design_scores_gemma":[0.00025432016,0.00011548007,0.013434922,0.00024587996,0.000116701645,1.2441642e-7,0.0000036012527,0.000045747478,0.9797922,0.000002462376,0.005741269,0.00024733518],"about_ca_topic_score_codex":0.000027735934,"about_ca_topic_score_gemma":0.000005430683,"teacher_disagreement_score":0.0181165,"about_ca_system_score_codex":0.000044458964,"about_ca_system_score_gemma":0.00043416937,"threshold_uncertainty_score":0.9874572},"labels":[],"label_agreement":null},{"id":"W3080254111","doi":"10.1021/acs.jpcb.0c03935","title":"Salt-Dependent Interactions between the C-Terminal Domain of Osmoregulatory Transporter ProP of <i>Escherichia coli</i> and the Lipid Membrane","year":2020,"lang":"en","type":"article","venue":"The Journal of Physical Chemistry B","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Concordia University","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada","keywords":"CTD; Transmembrane domain; Membrane; Aquaporin; Biophysics; Transmembrane protein; Chemistry; Biochemistry; Helix (gastropod); Cytoplasm; Biology","score_opus":0.0074583152203049055,"score_gpt":0.22071723615759384,"score_spread":0.21325892093728893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3080254111","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99637115,0.00015038835,0.0001305219,0.0031098528,0.000026009564,0.00010292442,0.00002189999,0.0000017427373,0.000085538784],"genre_scores_gemma":[0.99892557,0.000078132805,0.00004308073,0.00013117184,0.000784671,0.0000018487431,0.000003927997,0.000010169037,0.000021433894],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99921495,0.00007900934,0.00034466354,0.000097473974,0.00015414019,0.00010978373],"domain_scores_gemma":[0.9991963,0.000055655793,0.00038629505,0.00021900242,0.00008821617,0.000054519507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025242587,0.00011915906,0.00027456827,0.0000050934736,0.00004900192,0.000007167275,0.00041566681,0.00008101544,0.000008833401],"category_scores_gemma":[0.000026644975,0.000056052795,0.00015757723,0.00006403725,0.00064461713,0.0000034198802,0.00008919073,0.0002960189,2.352535e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006295296,0.00004888284,0.00005293813,0.000058033707,0.0001418987,0.0000010747314,0.00031891983,0.000014721817,0.99829143,0.000017136836,0.000069586975,0.00035586834],"study_design_scores_gemma":[0.000836079,0.0002466882,0.0005772036,0.000022358689,0.00017189964,0.000039221002,0.00017831514,0.000025821402,0.99597484,0.00012421497,0.0017386905,0.000064693195],"about_ca_topic_score_codex":0.0000039715173,"about_ca_topic_score_gemma":8.961171e-7,"teacher_disagreement_score":0.002978681,"about_ca_system_score_codex":0.000003863755,"about_ca_system_score_gemma":0.000055053584,"threshold_uncertainty_score":0.23751187},"labels":[],"label_agreement":null},{"id":"W3081370688","doi":"10.1007/978-1-0716-0826-5_4","title":"Computational Methods for Elucidating Gene Expression Regulation in Bacteria","year":2020,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Gene; Promoter; Biology; Computational biology; Regulation of gene expression; Gene expression; Genetics; Bacteria; Transcription (linguistics)","score_opus":0.028066326305872826,"score_gpt":0.39399566942301634,"score_spread":0.36592934311714354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3081370688","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11777884,0.00038535355,0.8805887,0.00062057906,0.00018090384,0.0003758133,0.000016044789,0.00001514171,0.00003860574],"genre_scores_gemma":[0.05554753,0.000034516772,0.94304776,0.00069373014,0.00012374613,0.00008758358,0.00042662313,0.000029787141,0.00000871053],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99746644,0.0010404133,0.00047476412,0.0006546811,0.00003735076,0.0003263504],"domain_scores_gemma":[0.9993855,0.00009212165,0.0001462013,0.0002471371,0.00006471517,0.00006437345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010695325,0.00020158051,0.00031778982,0.000113785296,0.00003637003,0.000014716831,0.00026295707,0.000550235,0.000021588829],"category_scores_gemma":[0.0007861839,0.00020352892,0.00009282464,0.00022533479,0.00009287504,0.000002939184,0.0002352857,0.00015264162,0.0000011624919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001439924,0.000027586946,0.00039454005,0.000016068754,0.000013304219,0.0000012039399,0.00003404179,0.00094397675,0.95651865,0.000497378,0.000016057073,0.041393213],"study_design_scores_gemma":[0.000880537,0.00036006188,0.0009291933,0.000009156795,0.0000065149716,0.0000056882445,0.000015122072,0.0056823916,0.9778315,0.006548981,0.0075040194,0.00022685039],"about_ca_topic_score_codex":0.000006433898,"about_ca_topic_score_gemma":0.0000031064696,"teacher_disagreement_score":0.06245905,"about_ca_system_score_codex":0.000018629753,"about_ca_system_score_gemma":0.000053984233,"threshold_uncertainty_score":0.82996684},"labels":[],"label_agreement":null},{"id":"W3081934582","doi":"10.1016/j.str.2020.08.006","title":"Characterization of the Pilotin-Secretin Complex from the Salmonella enterica Type III Secretion System Using Hybrid Structural Methods","year":2020,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Secretin; Salmonella enterica; Secretion; Type three secretion system; Pilus; Effector; Cytoplasm; Flagellum; Biophysics; Crystallography; Membrane; Chemistry; Bacteria; Salmonella; Biology; Biochemistry; Escherichia coli; Gene; Genetics; Virulence","score_opus":0.022093380388879577,"score_gpt":0.26503891295287485,"score_spread":0.24294553256399526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3081934582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953275,0.00009269018,0.002778439,0.000510947,0.00059867423,0.0002475626,0.00041149772,0.000015572463,0.000017135337],"genre_scores_gemma":[0.9955944,0.000015868805,0.0027672793,0.00037675118,0.0005436958,0.0000010653378,0.00067607244,0.000020124566,0.0000047842323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900043,0.00021362405,0.00024827363,0.00028542714,0.00010149267,0.0001507755],"domain_scores_gemma":[0.9992529,0.000008633955,0.00025447155,0.00035780593,0.00008805139,0.000038121834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005780878,0.00016351542,0.00018846888,0.000009248665,0.00011956593,0.00002580545,0.00039308507,0.00016969102,0.000063845786],"category_scores_gemma":[0.000035923207,0.000098115335,0.00007612469,0.00012415026,0.00013358105,0.0000022484487,0.00026351423,0.00014137961,6.6950514e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011058425,0.0000014987683,0.00062067696,0.00001649073,0.000041607116,3.0588632e-7,0.00007353865,0.000017344797,0.9981237,0.000055882167,0.00004050857,0.00089785503],"study_design_scores_gemma":[0.0002659257,0.00012925628,0.0200179,0.000014782564,0.000048138238,0.000018412025,0.00009174512,0.0026603874,0.971295,0.000048766527,0.0052761254,0.00013358184],"about_ca_topic_score_codex":0.000050239596,"about_ca_topic_score_gemma":0.0000061076194,"teacher_disagreement_score":0.026828727,"about_ca_system_score_codex":0.000012240459,"about_ca_system_score_gemma":0.000040191633,"threshold_uncertainty_score":0.40010273},"labels":[],"label_agreement":null},{"id":"W3083884062","doi":"10.3389/fmicb.2020.02071","title":"Editorial: Mechanisms of Prokaryotic Predation","year":2020,"lang":"en","type":"editorial","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Predation; Biology; Computational biology; Evolutionary biology; Ecology","score_opus":0.002901711119025839,"score_gpt":0.2001454141167499,"score_spread":0.19724370299772406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3083884062","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010045256,0.000774768,0.0036181805,0.000102269536,0.9932722,0.0004437965,0.0007184109,0.000018029923,0.00004782579],"genre_scores_gemma":[0.0019547893,0.00086253555,0.009144453,0.000042767515,0.980236,0.000041476163,0.0074405614,0.000070699185,0.00020670067],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979966,0.000161641,0.00058302324,0.00077554677,0.00010632051,0.000376811],"domain_scores_gemma":[0.998866,0.000020325768,0.00039847454,0.00047085993,0.00019267286,0.00005166408],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00025079807,0.00035823692,0.0006887808,0.00017513541,0.000025061127,0.000011554227,0.0006600896,0.0039827563,0.000009551378],"category_scores_gemma":[0.00048618874,0.00036596044,0.00014304291,0.00016063149,0.00022917755,0.0000020759999,0.0003567745,0.0006128421,0.0000067893984],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021082305,0.000029357852,0.000017275011,0.000056359757,0.000058805563,8.954539e-7,0.0000065982304,0.0000017930909,0.46104988,0.000008136294,0.53836256,0.00019752888],"study_design_scores_gemma":[0.0005753671,0.0007151999,0.0000028812392,0.000029325858,0.000035329693,0.0000016150035,0.000014474146,0.0000027494902,0.23510098,0.00046925317,0.76279145,0.00026135732],"about_ca_topic_score_codex":0.000016876249,"about_ca_topic_score_gemma":0.000026066466,"teacher_disagreement_score":0.22594891,"about_ca_system_score_codex":0.000044770586,"about_ca_system_score_gemma":0.00038447056,"threshold_uncertainty_score":0.99987924},"labels":[],"label_agreement":null},{"id":"W3084307332","doi":"10.1073/pnas.2004598117","title":"A conserved subcomplex within the bacterial cytokinetic ring activates cell wall synthesis by the FtsW-FtsI synthase","year":2020,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Howard Hughes Medical Institute","keywords":"Cell division; Peptidoglycan; Cell biology; Biology; FtsZ; Bacterial cell structure; Activator (genetics); Cell; Asymmetric cell division; Lipid II; Cell wall; Bacteria; Biochemistry; Genetics; Gene","score_opus":0.030747858381872297,"score_gpt":0.25164910665723317,"score_spread":0.22090124827536087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3084307332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9772239,0.0001509032,8.509417e-7,0.021954801,0.000027256281,0.00019601187,0.000038700335,0.0000085938,0.00039899716],"genre_scores_gemma":[0.99857247,0.00006096025,0.00027506755,0.00089590705,0.00014215989,0.000016925713,5.6923767e-7,0.000008221254,0.000027706747],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988522,0.000021257578,0.0002868671,0.00028944234,0.00038579383,0.00016442449],"domain_scores_gemma":[0.9993326,0.00009239175,0.00039313396,0.000022352528,0.00012416778,0.00003533654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000611789,0.00012810153,0.0001414805,0.000024029228,0.00024334935,0.00004668605,0.0012969656,0.0001521961,0.000014346344],"category_scores_gemma":[0.00056228513,0.00006426934,0.00008559498,0.00028759384,0.0011433503,0.000011224877,0.0002771141,0.00015899121,0.0000011881059],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006367218,0.000022837274,0.00031968614,0.000022649434,0.000019929576,3.9282027e-9,0.00006921824,0.000013340373,0.99759763,0.000669197,0.0011141221,0.00008771668],"study_design_scores_gemma":[0.0001453007,0.00010470678,0.0019888184,0.000017304279,0.000020229481,0.0000050085387,0.00014141589,0.00033493157,0.9936982,0.0007118792,0.0027442551,0.000087983084],"about_ca_topic_score_codex":0.000010898455,"about_ca_topic_score_gemma":2.984304e-7,"teacher_disagreement_score":0.021348597,"about_ca_system_score_codex":0.0000071576123,"about_ca_system_score_gemma":0.00003815624,"threshold_uncertainty_score":0.42127216},"labels":[],"label_agreement":null},{"id":"W3087050519","doi":"10.3389/fmicb.2020.560099","title":"Function, Evolution, and Composition of the RpoS Regulon in Escherichia coli","year":2020,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"rpoS; Regulon; Sigma factor; Biology; Escherichia coli; Genetics; Gene; Transcriptome; Adaptation (eye); Microbiology; Gene expression; Promoter; RNA polymerase","score_opus":0.005972873445213264,"score_gpt":0.2109305114590895,"score_spread":0.20495763801387623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3087050519","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011386073,0.9863183,0.00041113654,0.000115445364,0.001078134,0.000562581,0.00010192563,0.000004899394,0.00002151385],"genre_scores_gemma":[0.0053820377,0.9930603,0.00094148796,0.00007510619,0.00010541034,0.00003530132,0.00032892835,0.000024638775,0.000046781493],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99855876,0.00028466704,0.0004825403,0.0004426203,0.000021776797,0.00020963834],"domain_scores_gemma":[0.99936134,0.0000066174716,0.00027377647,0.00030374035,0.000030593885,0.00002391876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012614726,0.00024173656,0.00077810057,0.00011906313,0.000029786968,0.000005366917,0.00029909413,0.0010151432,0.0000029813632],"category_scores_gemma":[0.00002766461,0.00018729697,0.00013210405,0.0002942884,0.0003386377,0.0000012880611,0.00027022362,0.00030501597,0.0000012095343],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015951217,0.00010585348,0.0012101678,0.0019067277,0.00021887371,0.00000313232,0.000024427643,0.0000025791705,0.85796607,0.00016441171,0.008805029,0.1294332],"study_design_scores_gemma":[0.00032160376,0.00020494238,0.00027557265,0.00048607078,0.000091976064,0.00002982066,0.000013979589,0.0000022893366,0.0037276053,0.000097189244,0.994545,0.00020394426],"about_ca_topic_score_codex":0.000016385568,"about_ca_topic_score_gemma":0.00005268352,"teacher_disagreement_score":0.98574,"about_ca_system_score_codex":0.000058106885,"about_ca_system_score_gemma":0.00016422367,"threshold_uncertainty_score":0.7829715},"labels":[],"label_agreement":null},{"id":"W3088860978","doi":"10.1038/s41598-020-72389-6","title":"Correlated chromosomal periodicities according to the growth rate and gene expression","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Keio University","keywords":"Biology; Gene; Transcriptome; Genetics; Gene expression; Phenotype; Strain (injury); Genetic variation; Genome; Population","score_opus":0.009272638049898778,"score_gpt":0.20672077344296513,"score_spread":0.19744813539306635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3088860978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955599,0.00031936384,0.00029930464,0.0017806331,0.001729989,0.00018999974,0.0000049695245,0.000021651464,0.00009421432],"genre_scores_gemma":[0.9986926,0.000024315364,0.00036387518,0.00037454875,0.00021656367,0.000011300856,0.000056953373,0.000011294213,0.00024855032],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989085,0.00003490411,0.0002015934,0.00055887713,0.000100511905,0.00019560773],"domain_scores_gemma":[0.99937797,0.0000034864154,0.00009005014,0.00034248136,0.0000769072,0.00010913007],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028009745,0.00011013374,0.00010297469,0.000026753498,0.00029142085,0.00017964953,0.00014063212,0.00012222037,0.000017706718],"category_scores_gemma":[0.00016468484,0.000076436394,0.00003614322,0.0001644068,0.00019293548,0.0000033401848,0.00034513886,0.00007372586,0.000007530293],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021377375,0.0000053601434,0.0014423567,0.000004960921,0.000007099227,0.000026500607,0.0001283354,0.000011275119,0.99266434,0.0000057852135,0.0052353526,0.00044724968],"study_design_scores_gemma":[0.0000723256,0.000115913856,0.00063510344,0.000007379956,0.0000073075025,0.00009674349,0.00014281394,0.000032979162,0.94065577,0.00007112899,0.058053166,0.00010934059],"about_ca_topic_score_codex":0.0000057583115,"about_ca_topic_score_gemma":0.0000057355364,"teacher_disagreement_score":0.052817814,"about_ca_system_score_codex":0.0000037125528,"about_ca_system_score_gemma":0.000050238785,"threshold_uncertainty_score":0.3116986},"labels":[],"label_agreement":null},{"id":"W3091964957","doi":"10.1128/jb.00313-20","title":"Characterization of the TyrR Regulon in the Rhizobacterium Enterobacter ludwigii UW5 Reveals Overlap with the CpxR Envelope Stress Response","year":2020,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Regulon; Biology; Gene; Enterobacter; Bacteria; Transcription factor; Genome; Genetics; Escherichia coli","score_opus":0.008044963244477525,"score_gpt":0.20881641875390478,"score_spread":0.20077145550942724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3091964957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9787649,0.00007437052,0.000069151574,0.020450026,0.00027824938,0.000277584,0.000059100992,0.000003091946,0.000023523859],"genre_scores_gemma":[0.99707234,0.000150322,0.00008091749,0.002174158,0.0003964688,0.000008254235,0.000029611241,0.000021553176,0.00006637565],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978093,0.0008739196,0.0006288261,0.00024297289,0.0001750727,0.00026992676],"domain_scores_gemma":[0.99834883,0.000052756703,0.00086886674,0.00048870186,0.00018752218,0.000053324176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069508224,0.00022080551,0.0003691323,0.000056330016,0.000074316755,0.000037885235,0.0009854286,0.00030579348,0.000022459852],"category_scores_gemma":[0.00017111414,0.00010200828,0.00015450291,0.00023705386,0.00032577338,0.000013187579,0.00022647466,0.00039389517,0.0000019145589],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031104293,0.000057482182,0.010985234,0.000018222168,0.0000703475,0.000009275658,0.00039329904,0.00000404209,0.9848286,0.000029813344,0.00015683731,0.00033639977],"study_design_scores_gemma":[0.0008363619,0.0019804758,0.53845596,0.00006866138,0.000040951578,0.00019129706,0.00022975248,0.0000023604498,0.42578134,0.000012957756,0.032250974,0.00014890493],"about_ca_topic_score_codex":0.000004932833,"about_ca_topic_score_gemma":0.000028024517,"teacher_disagreement_score":0.5590473,"about_ca_system_score_codex":0.000020095576,"about_ca_system_score_gemma":0.00014912988,"threshold_uncertainty_score":0.4159777},"labels":[],"label_agreement":null},{"id":"W3092579827","doi":"10.1534/genetics.120.303643","title":"Identification of <i>Escherichia coli</i> Host Genes That Influence the Bacteriophage Lambda (λ) T4<i>rII</i> Exclusion (Rex) Phenotype","year":2020,"lang":"en","type":"article","venue":"Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Biology; Regulon; Bacteriophage; Lysogenic cycle; Genetics; Prophage; Escherichia coli; Lysogen; Phenotype; rpoS; Gene; Mutant; Gene expression","score_opus":0.009972275540223874,"score_gpt":0.22009762466850744,"score_spread":0.21012534912828357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3092579827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99447453,0.0024269822,0.00092355657,0.0014229569,0.00024784528,0.00032830308,0.000080847225,0.000023621391,0.000071370305],"genre_scores_gemma":[0.99431914,0.0029628845,0.00078619417,0.0014878468,0.0002604858,0.000017087528,0.000064650754,0.0000358881,0.00006584559],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986118,0.00008070918,0.00040339035,0.000433983,0.00019249391,0.00027760267],"domain_scores_gemma":[0.99884516,0.000011962415,0.00028038558,0.0006219904,0.0001468539,0.00009362803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015250173,0.00022485625,0.00020646346,0.000023207282,0.00012425997,0.000044841152,0.00063371507,0.00031078875,0.000018170316],"category_scores_gemma":[0.000053089745,0.00018385772,0.00009674705,0.00020290952,0.00024643514,0.000004380011,0.0004482583,0.0001364557,0.000023462653],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007335982,0.000032452746,0.0012070396,0.000034333156,0.0000347663,0.0000011572429,0.0000885167,0.00009289008,0.9960952,0.000042093474,0.00029412826,0.002004071],"study_design_scores_gemma":[0.0002832111,0.00029848464,0.018398115,0.0000064275355,0.000039862713,0.0000030319811,0.00006236641,0.00013804769,0.92076033,0.00003138395,0.059775896,0.00020286243],"about_ca_topic_score_codex":0.000010483176,"about_ca_topic_score_gemma":0.000025692207,"teacher_disagreement_score":0.075334884,"about_ca_system_score_codex":0.0000075190706,"about_ca_system_score_gemma":0.00008073591,"threshold_uncertainty_score":0.74975},"labels":[],"label_agreement":null},{"id":"W3093251791","doi":"10.1074/jbc.ra120.015642","title":"Nonspecific DNA binding by P1 ParA determines the distribution of plasmid partition and repressor activities","year":2020,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Repressor; Plasmid; DNA; Chemistry; Lac repressor; Partition (number theory); Biology; Molecular biology; Genetics; Biochemistry; Gene; lac operon; Mathematics; Combinatorics; Transcription factor","score_opus":0.023697340045622708,"score_gpt":0.2356545127222431,"score_spread":0.2119571726766204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093251791","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979879,0.0006249105,0.00012806145,0.0010345959,0.00004057517,0.000040627136,0.0001111259,0.0000037363338,0.000028425047],"genre_scores_gemma":[0.99833167,0.0011959459,0.00006452509,0.00006224272,0.00024785826,0.00000206413,0.00007752909,0.0000042162574,0.000013927194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993443,0.000031517142,0.00028535488,0.00015161467,0.00006889849,0.000118319],"domain_scores_gemma":[0.9994677,0.00002724726,0.0003001316,0.000099965204,0.000044765377,0.000060229202],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011798552,0.00010214306,0.00017898697,0.0000046579244,0.00004588014,0.000016022523,0.00016184477,0.00025620952,0.000015478743],"category_scores_gemma":[0.00016235138,0.00006213465,0.00008016379,0.000046783633,0.00025511067,0.0000034205466,0.00009554184,0.00013866634,2.7677916e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019594455,0.000028407085,0.0011107256,0.00001749926,0.000028857985,0.0000021982585,0.000008161072,0.0000012630938,0.99674684,0.000002745263,0.0010662785,0.0007910867],"study_design_scores_gemma":[0.0002394401,0.00037892474,0.00086242973,0.000012160643,0.0000152486155,0.000058748723,0.000086883,0.000010176068,0.9846614,0.000023253231,0.013574049,0.00007726181],"about_ca_topic_score_codex":4.0979907e-7,"about_ca_topic_score_gemma":1.1904879e-7,"teacher_disagreement_score":0.01250777,"about_ca_system_score_codex":0.000005546806,"about_ca_system_score_gemma":0.000017033737,"threshold_uncertainty_score":0.25337774},"labels":[],"label_agreement":null},{"id":"W3093382990","doi":"10.1016/j.tig.2020.09.014","title":"Keeping Up with RNA-Based Regulation in Bacteria: New Roles for RNA Binding Proteins","year":2020,"lang":"en","type":"review","venue":"Trends in Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Biology; Riboswitch; RNA-binding protein; CRISPR; RNA; Regulation of gene expression; Computational biology; Genetics; Effector; Gene expression; Gene; Transcriptome; Cell biology; Non-coding RNA","score_opus":0.03817757011400207,"score_gpt":0.304762829852653,"score_spread":0.26658525973865094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093382990","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0071162554,0.9877876,0.0023806086,0.00028782,0.00045494508,0.001609068,0.00020253687,0.000039931554,0.00012120256],"genre_scores_gemma":[0.0035146298,0.96870786,0.02363961,0.00005853148,0.00077567436,0.00028900235,0.0023338257,0.00018022223,0.0005006182],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977593,0.000096603544,0.00070277613,0.0008303692,0.00013000864,0.00048097366],"domain_scores_gemma":[0.9989051,0.000017665432,0.00039047626,0.00053768826,0.000041067437,0.000107980515],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015424735,0.0005315803,0.0010313969,0.00046118765,0.000043572614,0.000056372606,0.00044267756,0.0010930793,0.000019444633],"category_scores_gemma":[0.00003684908,0.00048074443,0.00022343558,0.000607137,0.00007619797,0.0000025686356,0.00014936221,0.00029843702,0.0000034550637],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009879296,0.00003883063,0.000018751629,0.00089200615,0.000061424944,0.0000055297874,0.000016166277,0.00006275702,0.035478156,0.000015204861,0.00013424805,0.96317816],"study_design_scores_gemma":[0.0013519983,0.00087640196,0.00006539955,0.0018799603,0.00018074959,0.000010200134,0.000007237018,0.00015818354,0.036992155,0.000022947812,0.9577604,0.0006943842],"about_ca_topic_score_codex":0.000012314187,"about_ca_topic_score_gemma":0.00046578143,"teacher_disagreement_score":0.96248376,"about_ca_system_score_codex":0.00008083493,"about_ca_system_score_gemma":0.0004492383,"threshold_uncertainty_score":0.99976444},"labels":[],"label_agreement":null},{"id":"W3094997234","doi":"10.1128/mbio.02796-20","title":"SPOR Proteins Are Required for Functionality of Class A Penicillin-Binding Proteins in Escherichia coli","year":2020,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"British Columbia Knowledge Development Fund; Fonds pour la Formation à la Recherche dans l’Industrie et dans l’Agriculture; Medical Research Council; Canadian Institutes of Health Research; French Infrastructure for Integrated Structural Biology; Howard Hughes Medical Institute; Agence Nationale de la Recherche; UK Research and Innovation; Wellcome Trust; Fonds De La Recherche Scientifique - FNRS","keywords":"Escherichia coli; Penicillin binding proteins; Microbiology; Escherichia coli Proteins; Chemistry; Computational biology; Biology; Biochemistry; Gene","score_opus":0.027029273168472735,"score_gpt":0.24458408298154075,"score_spread":0.21755480981306802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3094997234","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99545836,0.000114161594,0.0009542123,0.0021300856,0.000100110796,0.00097596535,0.00015704136,0.000014234248,0.00009585261],"genre_scores_gemma":[0.996236,0.000022645649,0.0028536129,0.00026122248,0.00020188715,0.0001460955,0.00013053797,0.000018876097,0.00012911078],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902874,0.000030188405,0.00028824972,0.00035597946,0.00008014904,0.00021669213],"domain_scores_gemma":[0.9994692,0.0000052296245,0.0001717243,0.00021278083,0.00008283984,0.000058178997],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014235202,0.00013235802,0.00021747804,0.000028542498,0.000036741414,0.0000103467855,0.00017874285,0.00031624414,0.000018347648],"category_scores_gemma":[0.00015208058,0.00012917731,0.00009156887,0.00014808193,0.00008390517,0.0000022175718,0.00010885637,0.000094888586,0.0000037052273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042036845,0.00008078823,0.0018026788,0.00008293878,0.000026104612,0.000001241612,0.00002437533,0.000007391245,0.9967353,0.00015832363,0.0002392618,0.00042125015],"study_design_scores_gemma":[0.00096260407,0.00078478974,0.0043860283,0.000020393254,0.000011510103,9.4352544e-7,0.00007057337,0.00009862937,0.9419802,0.00008612641,0.05143158,0.00016661368],"about_ca_topic_score_codex":0.000027390704,"about_ca_topic_score_gemma":0.00010966353,"teacher_disagreement_score":0.05475507,"about_ca_system_score_codex":0.000015543252,"about_ca_system_score_gemma":0.00009313323,"threshold_uncertainty_score":0.52676976},"labels":[],"label_agreement":null},{"id":"W3097176330","doi":"10.1128/aem.02182-20","title":"The Small RNAs PA2952.1 and PrrH as Regulators of Virulence, Motility, and Iron Metabolism in Pseudomonas aeruginosa","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; University of British Columbia","funders":"Canadian Institutes of Health Research; Killam Trusts; Government of Canada","keywords":"Pseudomonas aeruginosa; Virulence; Motility; Microbiology; Biology; Pseudomonadales; Metabolism; Quorum sensing; Bacteria; Cell biology; Biochemistry; Genetics; Gene","score_opus":0.0035820885572179478,"score_gpt":0.16251563905920738,"score_spread":0.15893355050198943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3097176330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960681,0.0030388397,0.000006446595,0.0005245102,0.000034775894,0.00020118055,0.000044465156,0.0000040012997,0.00007767478],"genre_scores_gemma":[0.99471897,0.0046256315,0.00018957039,0.00033379966,0.000039838134,0.000009876806,0.000054314372,0.000010752808,0.000017228109],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915195,0.00003536598,0.00020251537,0.0003883327,0.000019866948,0.00020195176],"domain_scores_gemma":[0.99970084,0.000013634635,0.0000709398,0.00014972995,0.0000019343158,0.00006290903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008816243,0.00015848406,0.00019817505,0.000018317955,0.0000631305,0.000009115067,0.000112981485,0.00026476505,0.0000052460723],"category_scores_gemma":[0.0000065434124,0.00012223152,0.0000219502,0.000030270972,0.0007553743,0.0000011973318,0.0003974162,0.00010331506,0.0000015422858],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009175631,0.000022873337,0.0035734316,0.000011899684,0.000018632725,8.3182334e-7,0.00005994597,0.0000011169504,0.98815393,0.0003711605,0.000015152921,0.007679265],"study_design_scores_gemma":[0.0009188844,0.00031850787,0.042396277,0.0000034433829,0.000023652487,0.00005668645,0.00028225663,0.000008593114,0.92714953,0.0003595387,0.028294932,0.00018769478],"about_ca_topic_score_codex":0.000019365401,"about_ca_topic_score_gemma":0.00002090315,"teacher_disagreement_score":0.061004397,"about_ca_system_score_codex":0.0000037305238,"about_ca_system_score_gemma":0.000007742536,"threshold_uncertainty_score":0.49844566},"labels":[],"label_agreement":null},{"id":"W3097572597","doi":"10.1016/j.jsb.2020.107660","title":"Cryo-EM analysis of the SctV cytosolic domain from the enteropathogenic E. coli T3SS injectisome","year":2020,"lang":"en","type":"article","venue":"Journal of Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Flagellum; Secretion; Biology; Effector; Cryo-electron microscopy; Type three secretion system; Cell biology; Cytosol; Biophysics; Biochemistry; Microbiology; Virulence; Gene; Enzyme","score_opus":0.008426130325432678,"score_gpt":0.22829901560509705,"score_spread":0.21987288527966437,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3097572597","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952188,0.0012916941,0.000114268456,0.0025584158,0.00050598226,0.00009374111,0.00020343222,0.00000273279,0.000010905632],"genre_scores_gemma":[0.9976088,0.00021611518,0.000355541,0.001194373,0.0005772143,0.0000010301186,0.00003281923,0.000009201695,0.0000049072837],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874794,0.0002187138,0.00052090327,0.00021336746,0.00009803683,0.00020102748],"domain_scores_gemma":[0.9988432,0.00003110929,0.0006069691,0.0003168493,0.00013465172,0.00006725603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013772689,0.00016005216,0.00041928043,0.000054079937,0.00007822742,0.000016755694,0.00080617605,0.00029521476,0.000056411078],"category_scores_gemma":[0.00012248353,0.00008154139,0.00041742664,0.0003944439,0.00028715457,0.0000029994067,0.00031730643,0.00025549182,0.0000010363045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018988308,0.000006372413,0.02511484,0.0000024605465,0.0007211684,0.0000017220996,0.00016325837,0.000031119667,0.9722824,0.000072897616,0.00014730047,0.001266548],"study_design_scores_gemma":[0.0010627753,0.0015453835,0.4169202,0.000010608796,0.0008642009,0.000082956576,0.00052249455,0.000050381812,0.568909,0.0012255743,0.008567669,0.00023874112],"about_ca_topic_score_codex":0.000034129003,"about_ca_topic_score_gemma":0.00008823695,"teacher_disagreement_score":0.40337342,"about_ca_system_score_codex":0.000011885657,"about_ca_system_score_gemma":0.00006918669,"threshold_uncertainty_score":0.33251613},"labels":[],"label_agreement":null},{"id":"W3097742030","doi":"10.1007/978-1-0716-0775-6_22","title":"Expression and Purification of Recombinant Proteins in Escherichia coli Tagged with the Metal-Binding Proteins SmbP and CusF3H+","year":2020,"lang":"en","type":"book-chapter","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Genetics","funders":"","keywords":"Escherichia coli; Periplasmic space; Recombinant DNA; Fusion protein; Inclusion bodies; Affinity chromatography; FLAG-tag; Biochemistry; Protein purification; Lysis; Myc-tag; Chemistry; Target protein; Biology; Gene; Enzyme","score_opus":0.017877145793378527,"score_gpt":0.2893443634893717,"score_spread":0.2714672176959932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3097742030","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78486186,0.015131034,0.18104321,0.004497472,0.00052024884,0.007813519,0.00011243414,0.000048441252,0.005971798],"genre_scores_gemma":[0.11416563,0.0039584455,0.87650347,0.00036584563,0.00013178917,0.0005679072,0.00034421048,0.00019279432,0.0037699128],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980279,0.0004594379,0.0004372074,0.0007537691,0.00007320052,0.00024846196],"domain_scores_gemma":[0.9990137,0.00003204282,0.00037601285,0.00047027314,0.000054728942,0.000053242748],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007266908,0.000356673,0.0005690809,0.00014993086,0.000045111454,0.000014168504,0.00027675042,0.0010277914,0.000006362065],"category_scores_gemma":[0.000134567,0.00025183323,0.00006199262,0.0000927529,0.00050144305,0.0000022759505,0.0003811751,0.00048260012,4.432993e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018111282,0.000025761052,0.00006495308,0.00006706789,0.000056747685,0.000008684687,0.00003724536,0.0000011797686,0.98823035,0.004786311,0.0000065339223,0.0065340353],"study_design_scores_gemma":[0.0007048195,0.0011189581,0.00011702328,0.000116986506,0.00004510058,0.000015364993,0.0000266205,0.000015564498,0.9675614,0.0035741094,0.026371794,0.00033224234],"about_ca_topic_score_codex":0.000022928456,"about_ca_topic_score_gemma":0.000052218948,"teacher_disagreement_score":0.69546026,"about_ca_system_score_codex":0.000015729353,"about_ca_system_score_gemma":0.00008312442,"threshold_uncertainty_score":0.9999934},"labels":[],"label_agreement":null},{"id":"W3100992234","doi":"10.1186/s40168-020-00935-5","title":"Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities","year":2020,"lang":"en","type":"article","venue":"Microbiome","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Food and Agriculture; National Institutes of Health; Foundation for Food and Agriculture Research; National Institute of Allergy and Infectious Diseases; University of Texas Southwestern Medical Center; North Carolina State University; U.S. Department of Agriculture; Howard Hughes Medical Institute","keywords":"Biology; Microbial ecology; Medical microbiology; DNA sequencing; Computational biology; DNA; Genetics; Metagenomics; Evolutionary biology; Microbiology; Gene; Bacteria","score_opus":0.010515859086221819,"score_gpt":0.21431539244354159,"score_spread":0.20379953335731976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3100992234","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984991,0.00046887776,0.0003068992,0.00041195462,0.000024240539,0.000107364285,0.00016875411,0.000008029863,0.0000047937833],"genre_scores_gemma":[0.9990315,0.00019447273,0.00028586472,0.00025988603,0.00002145329,0.0000029761723,0.00019177387,0.000009338422,0.000002730459],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994212,0.000047764515,0.00018876925,0.00019418864,0.000023128852,0.00012496085],"domain_scores_gemma":[0.9997587,0.000004509157,0.000050126266,0.00012294593,0.0000278056,0.000035885405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000062118714,0.00012112622,0.00023108715,0.00013949396,0.000032549262,0.00001596794,0.000098225224,0.00023386872,0.0000074240415],"category_scores_gemma":[0.0000049074633,0.0001172687,0.000063328494,0.0002848133,0.0001837242,0.000002161778,0.000032128966,0.00008370799,1.5185948e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015120608,0.000015759282,0.00035907445,0.000042536354,0.00013022171,9.578939e-7,0.0005499362,0.000042110885,0.9979988,0.0000018823166,0.000005221194,0.00070229016],"study_design_scores_gemma":[0.0006280936,0.00022730375,0.0028087301,0.0000073029714,0.00013901475,0.0000047792064,0.00026769255,0.00033013927,0.9943467,0.0000034583486,0.0011035496,0.00013327546],"about_ca_topic_score_codex":0.00009691515,"about_ca_topic_score_gemma":0.0012820279,"teacher_disagreement_score":0.003652143,"about_ca_system_score_codex":0.0000078222665,"about_ca_system_score_gemma":0.000026515938,"threshold_uncertainty_score":0.47820786},"labels":[],"label_agreement":null},{"id":"W3101606943","doi":"10.1016/j.jmb.2021.167188","title":"Structural Dynamics of the Functional Nonameric Type III Translocase Export Gate","year":2020,"lang":"en","type":"preprint","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"KU Leuven; Deutsches Elektronen-Synchrotron; Fonds Wetenschappelijk Onderzoek; Fonds De La Recherche Scientifique - FNRS; Austrian Science Fund","keywords":"Translocase; Biophysics; Protein subunit; Protein structure; Chaperone (clinical); Biology; Crystallography; Chemistry; Biochemistry; Chromosomal translocation","score_opus":0.012473847392281995,"score_gpt":0.24655867415769708,"score_spread":0.2340848267654151,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3101606943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98671335,0.0018107299,0.0068494296,0.0017921006,0.0024692193,0.00018460632,0.0001031317,0.0000045033157,0.00007290338],"genre_scores_gemma":[0.99717796,0.00037689952,0.0013728936,0.00036624385,0.00042012986,0.0000025397842,0.00022066718,0.000031912037,0.00003073832],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833304,0.00016821238,0.0007449208,0.0003547382,0.00016406288,0.0002350423],"domain_scores_gemma":[0.9979861,0.0000084800995,0.0010217803,0.00048799638,0.00040520527,0.0000904668],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017968075,0.00030017146,0.00054546556,0.00008424265,0.000041687555,0.000011855844,0.0007279641,0.0009127086,0.000040304014],"category_scores_gemma":[0.00010077989,0.00021318594,0.0005106985,0.00014526912,0.0003737983,0.0000014345526,0.0006393711,0.0007172698,9.584636e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046366797,0.000031179556,0.00067467405,0.000040626946,0.00040913915,0.000025313677,0.000012456712,0.0005534715,0.9944777,0.00035182628,0.00023468144,0.002725257],"study_design_scores_gemma":[0.0020610231,0.003125965,0.00793417,0.00010218326,0.0005017941,0.0011437042,0.00007702896,0.00069053087,0.9676481,0.007860207,0.008116596,0.0007387328],"about_ca_topic_score_codex":0.000013541024,"about_ca_topic_score_gemma":0.000013431167,"teacher_disagreement_score":0.026829641,"about_ca_system_score_codex":0.000029585239,"about_ca_system_score_gemma":0.0005264695,"threshold_uncertainty_score":0.86934704},"labels":[],"label_agreement":null},{"id":"W3109770164","doi":"10.1038/s41598-020-76178-z","title":"Bioengineering of non-pathogenic Escherichia coli to enrich for accumulation of environmental copper","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Umeå Universitet; York University","keywords":"Copper; Escherichia coli; Peptide; Bioaccumulation; Chemistry; Peptide library; In silico; Environmental pollution; Docking (animal); Biochemistry; Environmental chemistry; Combinatorial chemistry; Peptide sequence; Environmental science; Gene; Organic chemistry","score_opus":0.016993843643729398,"score_gpt":0.25131212893324023,"score_spread":0.23431828528951082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3109770164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942199,0.000085278305,0.004515788,0.00008641682,0.00071812095,0.00031802448,0.000032211137,0.0000049490172,0.00001929697],"genre_scores_gemma":[0.99368185,0.0000064162614,0.006019211,0.00003099715,0.00006092969,0.000012217691,0.00011020059,0.000011068702,0.00006713134],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991327,0.000005909887,0.000291989,0.0003466297,0.00009431477,0.00012848299],"domain_scores_gemma":[0.9994683,0.0000025612435,0.00014177561,0.00028656813,0.00003746694,0.00006330572],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016659332,0.00008013419,0.00012738649,0.000036970643,0.000030260788,0.000011009272,0.0000951239,0.00010857192,0.000011396163],"category_scores_gemma":[0.000057869267,0.00007929611,0.00007129785,0.0001304874,0.00006945493,0.0000019519498,0.00010299059,0.0000236355,0.0000012803526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027621301,0.000025361525,0.00065175176,0.000022836311,0.000014651513,0.0000010538591,0.00004228655,0.0004082101,0.9973255,0.0000026655478,0.00061856786,0.0008595341],"study_design_scores_gemma":[0.000109066495,0.0002870627,0.0021879198,0.000004148081,0.00001137971,0.0000033025374,0.000020876989,0.00045402197,0.97990245,0.000017336364,0.01691871,0.000083741594],"about_ca_topic_score_codex":0.0000014138187,"about_ca_topic_score_gemma":0.0000011519604,"teacher_disagreement_score":0.017423024,"about_ca_system_score_codex":0.0000051490847,"about_ca_system_score_gemma":0.000036139256,"threshold_uncertainty_score":0.32336015},"labels":[],"label_agreement":null},{"id":"W3109972097","doi":"10.1016/j.ejmech.2020.113062","title":"Undecaprenol kinase: Function, mechanism and substrate specificity of a potential antibiotic target","year":2020,"lang":"en","type":"review","venue":"European Journal of Medicinal Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Medical Research Council; Engineering and Physical Sciences Research Council; Science Foundation Ireland","keywords":"Biochemistry; Kinase; Diacylglycerol kinase; Chemistry; Escherichia coli; Phosphatase; MAP3K7; Bacteria; Biology; Protein kinase A; Enzyme; Gene; Protein kinase C; MAP kinase kinase kinase; Genetics","score_opus":0.015268900523603135,"score_gpt":0.23451306448477535,"score_spread":0.21924416396117222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3109972097","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009650197,0.988041,0.0011076641,0.000074979835,0.00043335248,0.0001197281,0.00006147704,0.0000066066386,0.0005049892],"genre_scores_gemma":[0.056536455,0.9410039,0.00050657557,0.000022720753,0.0017109935,3.006682e-7,0.00007906445,0.000058726357,0.00008122169],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99795306,0.00020554966,0.0010028565,0.00036736258,0.00024989233,0.00022127182],"domain_scores_gemma":[0.99807465,0.000010512506,0.0012427488,0.0002929069,0.00016194394,0.00021722673],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005471135,0.00037922594,0.0010787925,0.0000620411,0.000040001913,0.00002162877,0.00047978648,0.0003189692,0.00006232648],"category_scores_gemma":[0.000101729456,0.00030192133,0.00034405765,0.0001296498,0.00024210106,0.0000028133875,0.00021229287,0.0006107548,0.0000037173825],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026093124,0.00011789918,0.0000029732014,0.007039363,0.00081281265,0.00088334724,0.000017454935,0.0000014484187,0.7508389,0.000028925204,0.0009309933,0.23906496],"study_design_scores_gemma":[0.0008329277,0.0015042778,0.00001535485,0.0029913343,0.0011300794,0.002561524,0.00007545174,0.0000017446997,0.108595766,0.00006634988,0.8818255,0.00039968576],"about_ca_topic_score_codex":5.5580375e-7,"about_ca_topic_score_gemma":1.2451977e-7,"teacher_disagreement_score":0.8808945,"about_ca_system_score_codex":0.00001590142,"about_ca_system_score_gemma":0.0002575833,"threshold_uncertainty_score":0.9999433},"labels":[],"label_agreement":null},{"id":"W3110157031","doi":"10.3389/fmolb.2020.582660","title":"Alteration of Membrane Fluidity or Phospholipid Composition Perturbs Rotation of MreB Complexes in Escherichia coli","year":2020,"lang":"en","type":"article","venue":"Frontiers in Molecular Biosciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"MreB; Peptidoglycan; Lipid II; Cardiolipin; Transmembrane protein; Biophysics; Cell biology; Membrane; Phospholipid; Biology; Cell wall; Membrane fluidity; Escherichia coli; Cell envelope; Cytoplasm; Biochemistry; Cell membrane; Chemistry; Cell; Cytoskeleton","score_opus":0.010917536025542272,"score_gpt":0.2310826140009744,"score_spread":0.22016507797543214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3110157031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9846965,0.000442781,0.013831444,0.00047609792,0.00026590124,0.00023278472,0.000019026098,0.000004717362,0.000030758427],"genre_scores_gemma":[0.98100805,0.00025229814,0.018383224,0.00024986197,0.000029579933,0.000007742034,0.000059766342,0.0000065849813,0.00000290138],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896497,0.000090208356,0.0003346781,0.0003075681,0.00014738903,0.00015517272],"domain_scores_gemma":[0.9996155,0.000004615276,0.0001458283,0.00013848123,0.00005645216,0.000039161172],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016064248,0.00011387063,0.00022458048,0.000090076304,0.000023619772,0.000012470708,0.0002483249,0.00015856879,0.0000053366043],"category_scores_gemma":[0.00007571685,0.000101756734,0.000046207962,0.0004432616,0.00027359114,0.000007542434,0.00007090143,0.000066856606,2.547205e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020235259,0.000067779634,0.0045157066,0.000042169937,0.000007960514,0.000001967026,0.00010315584,0.00036544804,0.9940194,0.000048051723,0.00009447383,0.0005315705],"study_design_scores_gemma":[0.0004723303,0.00056188257,0.0058499943,0.000023325892,0.000006277035,9.0609046e-7,0.00014869278,0.0036682922,0.98878765,0.000047848098,0.0003159154,0.00011687089],"about_ca_topic_score_codex":0.00006033719,"about_ca_topic_score_gemma":0.000031474203,"teacher_disagreement_score":0.005231699,"about_ca_system_score_codex":0.000011121512,"about_ca_system_score_gemma":0.00007821012,"threshold_uncertainty_score":0.4149519},"labels":[],"label_agreement":null},{"id":"W3110324227","doi":"10.1016/j.str.2020.11.002","title":"Structure of the Extracellular Region of the Bacterial Type VIIb Secretion System Subunit EsaA","year":2020,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Protein subunit; Secretion; Extracellular; Type (biology); Chemistry; Cell biology; Biology; Biochemistry; Gene; Ecology","score_opus":0.00668009934898362,"score_gpt":0.18624917280504563,"score_spread":0.17956907345606202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3110324227","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99781096,0.00031343696,0.000036701073,0.000508368,0.0009230199,0.00022664641,0.00013729569,0.000007854858,0.000035744328],"genre_scores_gemma":[0.99928415,0.000023082082,0.00009315492,0.00006413707,0.0004271253,5.1786384e-7,0.000053084736,0.000016183547,0.00003857314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99921566,0.00008875815,0.00022141018,0.00022311612,0.00012005971,0.00013099665],"domain_scores_gemma":[0.9991253,0.0000028266747,0.00024356249,0.0004883251,0.00010791991,0.000032057076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000024114506,0.00014137641,0.00016660782,0.000011450996,0.00005973917,0.000008800798,0.00045924148,0.0004436841,0.000034197095],"category_scores_gemma":[0.000047276626,0.00008117839,0.000101117665,0.00018828313,0.0001663747,0.0000016561186,0.0002215574,0.00016537949,2.9168294e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012398789,0.0000029465816,0.0006242002,0.00008016974,0.000031114065,4.4389998e-7,0.00005565664,0.00002720521,0.9981265,0.000399102,0.00019363793,0.00033501195],"study_design_scores_gemma":[0.0002611635,0.00017663346,0.0036499654,0.000026482963,0.00003817256,0.000028194841,0.000069229776,0.000029677458,0.9856792,0.000098588636,0.009848643,0.000094051575],"about_ca_topic_score_codex":0.000010764697,"about_ca_topic_score_gemma":0.000023905592,"teacher_disagreement_score":0.012447326,"about_ca_system_score_codex":0.000007876451,"about_ca_system_score_gemma":0.00007150362,"threshold_uncertainty_score":0.34220982},"labels":[],"label_agreement":null},{"id":"W3111178647","doi":"10.1111/mmi.14660","title":"MltG activity antagonizes cell wall synthesis by both types of peptidoglycan polymerases in <i>Escherichia coli</i>","year":2020,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Danone Institute of Canada; Howard Hughes Medical Institute","keywords":"Peptidoglycan; Biology; Escherichia coli; Cell wall; Microbiology; Polymerase; Biochemistry; Cell biology; Enzyme; Gene","score_opus":0.0047150187648163635,"score_gpt":0.19026218431355096,"score_spread":0.1855471655487346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3111178647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953403,0.0023260124,0.00038602747,0.0011932702,0.00007644442,0.00019941878,0.0002353024,0.000017470924,0.00022577663],"genre_scores_gemma":[0.99733645,0.0003779816,0.0005567677,0.0014463565,0.00004118948,0.000017436392,0.0001395728,0.00003630717,0.00004795069],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985855,0.00016826937,0.00028376485,0.0005469882,0.000039671024,0.0003757851],"domain_scores_gemma":[0.999395,0.000017482398,0.00015414642,0.0003142129,0.000035636385,0.00008348113],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007800592,0.000258743,0.00039736385,0.000050589802,0.000028729834,0.0000098864875,0.00036311155,0.000499349,0.000042869124],"category_scores_gemma":[0.000055644447,0.0002578155,0.000120373676,0.00017626463,0.00023126128,0.0000024772646,0.00021411022,0.00016372687,0.000009179651],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002597623,0.00014917029,0.00049498456,0.000039401377,0.000052412284,0.000010069915,0.000024464405,0.000009885079,0.9971257,0.000010555436,0.0011851324,0.00063845224],"study_design_scores_gemma":[0.00048659596,0.0005463301,0.0001442881,0.000008348068,0.00002646995,0.000007235627,0.000017997878,0.000012392881,0.96708804,0.000004139136,0.0313945,0.00026363463],"about_ca_topic_score_codex":0.00012921878,"about_ca_topic_score_gemma":0.000032359894,"teacher_disagreement_score":0.030209368,"about_ca_system_score_codex":0.00001180283,"about_ca_system_score_gemma":0.00008126098,"threshold_uncertainty_score":0.9999874},"labels":[],"label_agreement":null},{"id":"W3111377715","doi":"10.1111/mmi.14663","title":"The <i>Escherichia coli</i> FadR transcription factor: Too much of a good thing?","year":2020,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Danone Institute of Canada","keywords":"Escherichia coli; Biology; Biochemistry; Gene; Overproduction; Transcription factor; Transcription (linguistics)","score_opus":0.012118367972243105,"score_gpt":0.24587956992108256,"score_spread":0.23376120194883945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3111377715","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0028633631,0.99403876,0.0005852619,0.00024097052,0.0006732853,0.00084540667,0.00053473946,0.000030418863,0.00018778305],"genre_scores_gemma":[0.0029179365,0.99478143,0.00045261587,0.00035439437,0.00017015272,0.000072404044,0.0009869778,0.00009751257,0.00016659439],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972805,0.00045486016,0.0008372392,0.0008193287,0.00007185536,0.00053623033],"domain_scores_gemma":[0.99841475,0.000029781231,0.0005256884,0.0008377503,0.000103237406,0.00008878184],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00017580602,0.00061648677,0.0012937646,0.00006824009,0.00012437325,0.00003796212,0.0010450062,0.0017495535,0.000012329662],"category_scores_gemma":[0.00006867083,0.00044357925,0.0008260058,0.00024722185,0.00042304033,0.0000017108983,0.00035603,0.0005473842,0.000024496747],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029855039,0.00003662941,3.3851123e-7,0.00059402495,0.00039810772,0.000009278,0.000013658361,1.5335509e-7,0.8685841,0.00023652207,0.00079415034,0.12930317],"study_design_scores_gemma":[0.00021467608,0.0004579503,3.6547948e-7,0.00015639895,0.00025221484,0.00007820177,0.000008354824,3.335349e-7,0.19060329,0.00002154909,0.807849,0.00035766914],"about_ca_topic_score_codex":0.000010346629,"about_ca_topic_score_gemma":0.000014695717,"teacher_disagreement_score":0.8070548,"about_ca_system_score_codex":0.000031014253,"about_ca_system_score_gemma":0.00031886122,"threshold_uncertainty_score":0.9998016},"labels":[],"label_agreement":null},{"id":"W3112227495","doi":"","title":"Étude des interactions et des régulations au sein du noyau de synthèse du peptidoglycane septal d’E. coli","year":2020,"lang":"fr","type":"article","venue":"Open Repository and Bibliography (University of Liège)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fonds pour la Formation à la Recherche dans l’Industrie et dans l’Agriculture; Natural Sciences and Engineering Research Council of Canada; Medical Research Council; Centre National de la Recherche Scientifique; Fonds De La Recherche Scientifique - FNRS; Agence Nationale de la Recherche; Canadian Institutes of Health Research; French Infrastructure for Integrated Structural Biology; Joint Programming Initiative on Antimicrobial Resistance; Wellcome Trust","keywords":"Physics","score_opus":0.020973824221595515,"score_gpt":0.2384250339392222,"score_spread":0.2174512097176267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3112227495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98852974,0.001945396,0.0013764944,0.005503712,0.00023169324,0.00024462017,0.00014635196,0.000016876975,0.0020051107],"genre_scores_gemma":[0.9835098,0.010487603,0.005169148,0.00018128345,0.00020920942,0.0000012647498,0.00005203465,0.000015650134,0.00037403536],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987978,0.00020276844,0.00018724533,0.00043386582,0.00008500288,0.00029334353],"domain_scores_gemma":[0.9990809,0.000030145176,0.00018526196,0.0002264122,0.00021030071,0.00026697607],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00017838582,0.00020919798,0.00026463027,0.0007960657,0.00068941806,0.00015823754,0.00045707152,0.00033816948,0.000066450295],"category_scores_gemma":[0.0000028509305,0.00025875567,0.00027742606,0.002327711,0.001217261,0.000076289216,0.0007345622,0.00018900416,0.0000031191364],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047461895,0.00030456987,0.26460114,0.00014877657,0.0005388716,0.000075383716,0.0016534994,0.000047634407,0.7267664,0.00034088717,0.0043117846,0.00073640863],"study_design_scores_gemma":[0.0018005185,0.0025812548,0.830822,0.00031134716,0.0007387858,0.00038821177,0.004604494,0.0004323013,0.09510467,0.00020035167,0.06224664,0.0007694539],"about_ca_topic_score_codex":0.0060022734,"about_ca_topic_score_gemma":0.0012643887,"teacher_disagreement_score":0.6316618,"about_ca_system_score_codex":0.000019858067,"about_ca_system_score_gemma":0.00014768225,"threshold_uncertainty_score":0.99998647},"labels":[],"label_agreement":null},{"id":"W3116275492","doi":"10.1101/866426","title":"Genome-wide analysis of DNA uptake across the outer membrane of naturally competent <i>Haemophilus influenzae</i>","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institutes of Health; Drexel University","keywords":"Haemophilus influenzae; DNA; Pasteurellaceae; Biology; Genome; genomic DNA; Phase variation; Genetics; DNA sequencing; Bacterial outer membrane; Neisseriaceae; Gene; Bacteria; Escherichia coli","score_opus":0.009062156778032009,"score_gpt":0.21951352211387662,"score_spread":0.2104513653358446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3116275492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99481547,0.0021250541,0.00020369394,0.00023177035,0.0007660857,0.0006132166,0.0012046222,0.00003340756,0.0000067021347],"genre_scores_gemma":[0.9973955,0.0010356888,0.00085917336,0.00036856756,0.00020773639,0.000037743124,0.000011495637,0.00007510011,0.0000089827],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99713135,0.00012070935,0.0009368547,0.0009479117,0.00032843545,0.0005347361],"domain_scores_gemma":[0.99576515,0.00003301274,0.00096192706,0.0024297026,0.00070180045,0.00010838287],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005652505,0.00054473046,0.0010271288,0.00020985304,0.00008165794,0.00006364824,0.0013606442,0.0012142659,0.000018667177],"category_scores_gemma":[0.00012789316,0.00044435097,0.0005996736,0.0006536068,0.0004133531,0.0000048638076,0.0015356522,0.0005346411,0.00000687241],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010264056,0.00009326645,0.006750503,0.0002000759,0.002415602,0.0000047426215,0.000011326677,0.0008456623,0.98950714,0.00003961418,0.00002621617,0.0000031964123],"study_design_scores_gemma":[0.0003746718,0.0001271424,0.21877903,0.00004622114,0.00067241,2.4474287e-8,0.00000447398,0.00007899411,0.76718044,5.39885e-7,0.012320481,0.00041555133],"about_ca_topic_score_codex":0.000042847132,"about_ca_topic_score_gemma":0.000021866148,"teacher_disagreement_score":0.22232668,"about_ca_system_score_codex":0.000041470557,"about_ca_system_score_gemma":0.0003102555,"threshold_uncertainty_score":0.9998008},"labels":[],"label_agreement":null},{"id":"W3117246730","doi":"10.1101/790865","title":"Analysis of diverse eukaryotes suggests the existence of an ancestral mitochondrial apparatus derived from the bacterial type II secretion system","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Dalhousie University","funders":"National Supercomputing Center, Korea Institute of Science and Technology Information; European Regional Development Fund; Grantová Agentura České Republiky; Ministerstvo Školství, Mládeže a Tělovýchovy; Agence Nationale de la Recherche; Gordon and Betty Moore Foundation","keywords":"Secretion; Phylogenetic tree; Phylogenetics; Sequence (biology); Mitochondrion; Sequence alignment; Bacterial protein; Peptide sequence","score_opus":0.013221679317506499,"score_gpt":0.22038926424082794,"score_spread":0.20716758492332144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3117246730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949393,0.0006158507,0.00015439825,0.00005032249,0.0023933055,0.0005569273,0.0012571551,0.000030083294,0.0000026112466],"genre_scores_gemma":[0.9977251,0.00028905645,0.0010217838,0.000024226267,0.00083648023,0.00002781008,0.000037449492,0.00003635623,0.0000017194234],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978929,0.0002620789,0.0005412464,0.00076601125,0.00023730382,0.000300433],"domain_scores_gemma":[0.9968609,0.000035267636,0.00076813693,0.001796903,0.0004633789,0.00007537637],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00026722587,0.00037075908,0.0006222974,0.000095994284,0.00013024709,0.00006293335,0.0010521808,0.0008818763,0.000020863668],"category_scores_gemma":[0.00010558379,0.00026702968,0.0002602738,0.00044650387,0.0003501759,0.00000776935,0.00081567466,0.0003063424,0.0000027613733],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003365094,0.00006299586,0.0036636577,0.00005977134,0.00090080383,0.0000019675047,0.000014602039,0.00021211736,0.9946685,0.000050047223,0.000024755202,0.000004284519],"study_design_scores_gemma":[0.0003946903,0.00037569288,0.14863779,0.00008933822,0.000991333,1.9716234e-8,0.000023777224,0.0005311707,0.848017,4.6818957e-7,0.00061827817,0.00032044662],"about_ca_topic_score_codex":0.00035846132,"about_ca_topic_score_gemma":0.000063576445,"teacher_disagreement_score":0.14665149,"about_ca_system_score_codex":0.00003625045,"about_ca_system_score_gemma":0.00036560776,"threshold_uncertainty_score":0.9999782},"labels":[],"label_agreement":null},{"id":"W3120926545","doi":"10.1101/2020.12.31.425005","title":"YhcB (DUF1043), a novel cell division protein conserved across gamma-proteobacteria","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium; University of Saskatchewan; University of Regina","funders":"Université de Montréal","keywords":"FtsZ; Biology; Biogenesis; Cell division; Cell biology; Coiled coil; Cytokinesis; Vibrio cholerae; Transmembrane protein; Cell envelope; Protein domain; Protein structure; Transmembrane domain; Conserved sequence; Peptide sequence; Genetics; Cell; Biochemistry; Escherichia coli; Amino acid; Gene","score_opus":0.011491321214511317,"score_gpt":0.21872983213065278,"score_spread":0.20723851091614146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3120926545","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99241567,0.0013512954,0.0023178428,0.00026606713,0.0013012189,0.0013731177,0.00079680333,0.00017123853,0.000006742633],"genre_scores_gemma":[0.98712826,0.00034915644,0.010966143,0.00022610191,0.00067267,0.00039604472,0.000016368229,0.00020762465,0.000037650258],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99575514,0.00016338589,0.0007702219,0.0019659249,0.00032229972,0.0010230424],"domain_scores_gemma":[0.99598193,0.000010724363,0.00061431,0.0024000101,0.00067164085,0.00032136083],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000540853,0.00090234965,0.0007692836,0.00010664655,0.00023837428,0.0004922131,0.0010626386,0.0024368635,0.000054637578],"category_scores_gemma":[0.00021211957,0.00097351155,0.00034543115,0.00030721002,0.0002960965,0.000010352374,0.0028152117,0.0008890332,0.000032082713],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008987158,0.00033354,0.0007737708,0.00030137863,0.00014207145,0.000037893817,0.000005665782,0.000008681935,0.99817884,0.000025636895,0.00009662318,0.0000060285083],"study_design_scores_gemma":[0.0010587634,0.0002437265,0.017488467,0.0002660959,0.000051142866,8.643404e-8,0.0000067268643,0.000030544783,0.95899963,5.981763e-7,0.020751942,0.0011022753],"about_ca_topic_score_codex":0.000084528416,"about_ca_topic_score_gemma":0.000021669095,"teacher_disagreement_score":0.039179206,"about_ca_system_score_codex":0.00009121019,"about_ca_system_score_gemma":0.0008091642,"threshold_uncertainty_score":0.9992715},"labels":[],"label_agreement":null},{"id":"W3122065046","doi":"10.1016/j.molcel.2020.12.027","title":"XerD unloads bacterial SMC complexes at the replication terminus","year":2021,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Indiana University","keywords":"Recombinase; Biology; Condensin; Bacillus subtilis; Chromosome segregation; Chromosome; Cell biology; Ter protein; DNA; Holliday junction; DNA replication; Genetics; Recombination; Origin of replication; Homologous recombination; Bacteria; Gene","score_opus":0.00733967155098859,"score_gpt":0.22101630543095696,"score_spread":0.21367663387996838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3122065046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99318963,0.0009892118,0.00045582643,0.0012548718,0.00032058492,0.0001578384,0.000040270013,0.000019361167,0.003572389],"genre_scores_gemma":[0.99418044,0.00018285896,0.0006094392,0.0008098035,0.00022148486,0.000024411029,0.00081710547,0.00002980899,0.0031246669],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987883,0.000094135605,0.00020048767,0.0005515423,0.00010996759,0.00025557328],"domain_scores_gemma":[0.99854285,0.0000062430813,0.00008646393,0.0012211244,0.0000883086,0.00005502445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011186704,0.00016593073,0.00013169604,0.000018062487,0.00012624946,0.0000486698,0.00028470444,0.00026226646,0.00017337075],"category_scores_gemma":[0.00004296451,0.00013615545,0.00011829372,0.000102463026,0.00013040702,0.0000012864709,0.00046410924,0.000090869355,0.00006171826],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003849978,0.00004477551,0.00006949814,0.000008054848,0.0000212146,0.000030167968,0.000009050236,0.000005749567,0.9929738,0.000067572306,0.0030825988,0.0036490383],"study_design_scores_gemma":[0.00024339615,0.00007579625,0.00026032858,0.0000019890283,0.000015991007,0.00004614778,0.0000081630815,0.0000044988487,0.6485116,0.0000543072,0.35065922,0.000118576914],"about_ca_topic_score_codex":0.000011401915,"about_ca_topic_score_gemma":0.000049644834,"teacher_disagreement_score":0.34757662,"about_ca_system_score_codex":0.000017553786,"about_ca_system_score_gemma":0.000087159744,"threshold_uncertainty_score":0.5552258},"labels":[],"label_agreement":null},{"id":"W3123343964","doi":"10.1007/s00249-021-01498-5","title":"Towards understanding single-channel characteristics of OccK8 purified from Pseudomonas aeruginosa","year":2021,"lang":"en","type":"article","venue":"European Biophysics Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Innovative Medicines Initiative; European Federation of Pharmaceutical Industries and Associations","keywords":"Pseudomonas aeruginosa; Porin; Glutamic acid; Chemistry; Arginine; Bacteria; Amino acid; Biophysics; Glycine; Biochemistry; Microbiology; Bacterial outer membrane; Biology; Escherichia coli; Genetics","score_opus":0.03380832925011716,"score_gpt":0.22317158828119632,"score_spread":0.18936325903107915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3123343964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9828125,0.00037499453,0.01257643,0.00033393575,0.0010034693,0.000050761384,0.00015065001,0.000014142953,0.0026830914],"genre_scores_gemma":[0.99563193,0.0007011125,0.0016901633,0.00017501059,0.0014454317,4.0315314e-7,0.00019959538,0.00004661942,0.00010971087],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986057,0.00017624692,0.00043155008,0.00032378253,0.00017601404,0.00028667506],"domain_scores_gemma":[0.9989562,0.000009605251,0.00033069498,0.00038045508,0.00020100678,0.00012203339],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001812279,0.00021366675,0.00026565327,0.00004887833,0.000118671094,0.000095575444,0.0003105605,0.00014603815,0.00003534638],"category_scores_gemma":[0.0000725234,0.00020803466,0.00018425922,0.0001387597,0.00014635944,0.0000057867037,0.0002820943,0.00026424206,0.000014967973],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065597356,0.00013663298,0.00011063781,0.000008336678,0.00012207507,0.000115442264,0.000056055924,0.0000026046825,0.9942133,0.00031932228,0.00031701766,0.0045329644],"study_design_scores_gemma":[0.000635693,0.00032496196,0.002540612,0.000049205704,0.00005180566,0.00014518818,0.00018222201,0.000008929841,0.9873502,0.0015697221,0.0068618124,0.0002796457],"about_ca_topic_score_codex":0.0000034505356,"about_ca_topic_score_gemma":0.0000018853506,"teacher_disagreement_score":0.012819429,"about_ca_system_score_codex":0.000031219843,"about_ca_system_score_gemma":0.00011672624,"threshold_uncertainty_score":0.84834075},"labels":[],"label_agreement":null},{"id":"W3127344198","doi":"10.1101/2021.02.04.429786","title":"<i>Escherichia coli</i> S2P family intramembrane protease RseP is engaged in the regulated sequential cleavages of FecR in the ferric citrate signaling","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Operon; Biology; Escherichia coli; lac operon; Biochemistry; Chemistry; Gene","score_opus":0.015604229474186796,"score_gpt":0.2183250914575236,"score_spread":0.2027208619833368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3127344198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99575675,0.0017502704,0.00010888257,0.0005728726,0.00034790207,0.0012996322,0.00012542636,0.000030104171,0.000008148526],"genre_scores_gemma":[0.99655366,0.00084403093,0.00091820926,0.0010961884,0.000270275,0.00023901505,0.000006417111,0.000070223214,0.0000019671236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959119,0.0015214143,0.000756532,0.00094800926,0.00031966623,0.00054250617],"domain_scores_gemma":[0.9977227,0.00005530985,0.00043169546,0.0014673534,0.00025322547,0.00006971252],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002185462,0.00051990565,0.0005593844,0.00015889677,0.00014653611,0.00019858762,0.0012042936,0.001218511,0.000014908432],"category_scores_gemma":[0.00026539492,0.0004103114,0.00019854512,0.00077851274,0.00026461002,0.000007873751,0.0004447202,0.0018435076,0.0000026899386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011019188,0.00023643365,0.00045213834,0.00021265785,0.00010101419,0.00006848393,0.00009119163,0.00008963354,0.99852854,0.000030577747,0.00007418787,0.00000495876],"study_design_scores_gemma":[0.0006817642,0.00015827619,0.023739882,0.00020531414,0.00007622978,1.2221442e-7,0.00011216387,0.000087138775,0.9731042,0.0000029252901,0.0013637616,0.00046824367],"about_ca_topic_score_codex":0.0001890563,"about_ca_topic_score_gemma":0.000027837574,"teacher_disagreement_score":0.025424352,"about_ca_system_score_codex":0.0000454664,"about_ca_system_score_gemma":0.00063163147,"threshold_uncertainty_score":0.9998349},"labels":[],"label_agreement":null},{"id":"W3132250380","doi":"10.7554/elife.64207","title":"Dynamic interactions between the RNA chaperone Hfq, small regulatory RNAs, and mRNAs in live bacterial cells","year":2021,"lang":"en","type":"article","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Searle Scholars Program","keywords":"RNase P; RNA; Biology; Cell biology; RNA-binding protein; Transfer RNA; Messenger RNA; Non-coding RNA; Gene expression; Gene; Genetics","score_opus":0.008610007026735818,"score_gpt":0.22359818904356368,"score_spread":0.21498818201682787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3132250380","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975067,0.0007108783,0.00006437511,0.0009782346,0.0004996931,0.00010337739,0.000026085641,0.000014434738,0.00009622466],"genre_scores_gemma":[0.9972825,0.0010617753,0.0005108283,0.000226969,0.0003580678,0.0000102556405,0.00009967759,0.000022989832,0.00042692744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991464,0.00007055822,0.0002019667,0.00031447428,0.00006093686,0.00020566086],"domain_scores_gemma":[0.9994794,0.00001526035,0.00006482296,0.0003361975,0.000051851133,0.000052474017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011764321,0.0001302364,0.00014670403,0.000031517444,0.000058462618,0.000036421898,0.00015008154,0.0002087105,0.000034076667],"category_scores_gemma":[0.000036462807,0.00010863551,0.000046545978,0.00007130252,0.00011602628,0.0000024246713,0.00026057367,0.00017015627,0.000010060064],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022803411,0.000025890098,0.00063190435,0.000004451599,0.000033483317,0.0000041436015,0.00005156172,0.0000020978828,0.99493456,0.000023274586,0.00020112898,0.0040646954],"study_design_scores_gemma":[0.0003835679,0.00010311648,0.035106946,0.000014156182,0.00001790622,0.000017207221,0.00013395833,0.000021422273,0.88975537,0.000020137828,0.07427626,0.00014994325],"about_ca_topic_score_codex":0.000026609794,"about_ca_topic_score_gemma":0.0006546929,"teacher_disagreement_score":0.10517919,"about_ca_system_score_codex":0.000015057041,"about_ca_system_score_gemma":0.000069112626,"threshold_uncertainty_score":0.44300276},"labels":[],"label_agreement":null},{"id":"W3132875779","doi":"10.1128/jb.00487-20","title":"Stress-Induced Block in Dicarboxylate Uptake and Utilization in Salmonella enterica Serovar Typhimurium","year":2021,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Salmonella enterica; Biology; Salmonella; Serotype; Microbiology; Enterobacteriaceae; Block (permutation group theory); Bacteria; Escherichia coli; Genetics; Gene","score_opus":0.016211995065970895,"score_gpt":0.2498488113876112,"score_spread":0.2336368163216403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3132875779","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981586,0.00084242836,0.00001796321,0.0005084463,0.00034451482,0.000055141933,0.000007637588,0.000002171274,0.00006310904],"genre_scores_gemma":[0.99691284,0.0023205741,0.00040428573,0.00014125013,0.00015551093,0.0000016014712,0.000023275761,0.00001266861,0.00002797663],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889916,0.00012798313,0.00048786445,0.00022423307,0.000051864845,0.00020892044],"domain_scores_gemma":[0.99945366,0.000010865211,0.00021601647,0.00016428866,0.00009923672,0.000055927092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018047547,0.00012755071,0.00029639908,0.00013109711,0.000015191393,0.000014442521,0.00012685948,0.00036729436,0.000013841436],"category_scores_gemma":[0.000098082295,0.000118656426,0.000050485705,0.00014204046,0.00005989953,0.000004467942,0.00013823525,0.00020787095,7.678349e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001562526,0.00008939804,0.019611685,0.000011244235,0.000026756406,0.000096373136,0.000034881075,0.0000103070615,0.9763625,0.000014071575,0.00001617902,0.0035703282],"study_design_scores_gemma":[0.0017118622,0.0010626108,0.47838435,0.000064674256,0.000018679619,0.000737492,0.00011404985,0.000054913336,0.5074681,0.00016774253,0.010003749,0.00021175643],"about_ca_topic_score_codex":0.000011559206,"about_ca_topic_score_gemma":0.00017224388,"teacher_disagreement_score":0.4688944,"about_ca_system_score_codex":0.00001624751,"about_ca_system_score_gemma":0.00010441803,"threshold_uncertainty_score":0.48386687},"labels":[],"label_agreement":null},{"id":"W3135538081","doi":"10.1101/2021.03.08.434443","title":"Two different cell-cycle processes determine the timing of cell division in <i>Escherichia coli</i>","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Associazione Italiana per la Ricerca sul Cancro; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Agence Nationale de la Recherche; Volkswagen Foundation; National Science Foundation","keywords":"Cell division; Replication (statistics); Division (mathematics); Cell cycle; Biology; Genetics; DNA replication; Cell; Cell biology; DNA; Mathematics; Virology; Arithmetic","score_opus":0.009278946593099227,"score_gpt":0.21037181077594042,"score_spread":0.2010928641828412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3135538081","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956663,0.0028392551,0.00034047576,0.000085253596,0.00048018005,0.0004658593,0.000079868776,0.000028625978,0.000014171593],"genre_scores_gemma":[0.9961029,0.0016216777,0.0017797076,0.00011911312,0.00019611121,0.00009460545,0.0000028644588,0.000077389224,0.0000056122817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99789643,0.00012560809,0.0005321689,0.00082704675,0.00019606754,0.00042269877],"domain_scores_gemma":[0.99804354,0.000026611915,0.000414132,0.0011276354,0.00029726463,0.00009081215],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002353143,0.00044794386,0.00048394428,0.00009107805,0.00007537527,0.00009282953,0.0007004812,0.0006676422,0.000013950344],"category_scores_gemma":[0.000095692165,0.00037346408,0.00013050575,0.0003062121,0.00014919441,0.0000045529923,0.0012109425,0.0004810862,0.0000019613547],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030267398,0.0002615664,0.0022201962,0.0005180734,0.000030561274,0.00001031684,0.000008282616,0.00006765019,0.9968234,0.000002871643,0.000021841952,0.0000050071817],"study_design_scores_gemma":[0.0005503677,0.0001248205,0.01556413,0.00018201982,0.00005028604,1.2961657e-8,0.00000858505,0.00014196246,0.9821733,7.065217e-7,0.0007908239,0.00041294127],"about_ca_topic_score_codex":0.00005052741,"about_ca_topic_score_gemma":0.000041988053,"teacher_disagreement_score":0.014650021,"about_ca_system_score_codex":0.000036058136,"about_ca_system_score_gemma":0.0004344787,"threshold_uncertainty_score":0.99987173},"labels":[],"label_agreement":null},{"id":"W3138859902","doi":"10.1093/nar/gkab186","title":"Bound2Learn: a machine learning approach for classification of DNA-bound proteins from single-molecule tracking experiments","year":2021,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Cancer Institute; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Canada Foundation for Innovation","keywords":"Biology; Tracking (education); DNA; Saccharomyces cerevisiae; In silico; Computational biology; Genome; Biological system; Stability (learning theory); Visualization; Kinetics; Biophysics; Genetics; Gene; Data mining; Machine learning; Computer science; Physics","score_opus":0.07786652674384338,"score_gpt":0.3388557031905153,"score_spread":0.2609891764466719,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3138859902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98777694,0.0011116851,0.009000198,0.00021354905,0.00006274686,0.00047579393,0.00005365214,0.000017799654,0.001287654],"genre_scores_gemma":[0.9847899,0.00011601312,0.01321573,0.000021927992,0.00020369164,0.00010790857,0.00084722176,0.000045929977,0.0006516576],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981943,0.00023234081,0.00027861274,0.0005852597,0.00030085706,0.00040867852],"domain_scores_gemma":[0.99887764,0.000025431124,0.00009623508,0.0004747264,0.00045063178,0.00007530147],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043733534,0.00014512744,0.00020289993,0.00008533673,0.00022185268,0.00009667081,0.00032267507,0.000401649,0.000053221956],"category_scores_gemma":[0.00040377394,0.00014739626,0.00010153852,0.00024268223,0.00025245207,0.0000055016444,0.0002901696,0.00030031384,0.0000043421333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018290064,0.00031591966,0.00046467577,0.000036749625,0.00006525531,0.0000024146325,0.000092409355,0.000005977847,0.9906557,0.00012750427,0.00009637915,0.007954095],"study_design_scores_gemma":[0.00067640597,0.0006895866,0.0006887126,0.00001587598,0.000009305095,0.0000069842026,0.00036238143,0.0015231884,0.97154784,0.00012292189,0.024208222,0.00014857847],"about_ca_topic_score_codex":0.00004621323,"about_ca_topic_score_gemma":0.000020552916,"teacher_disagreement_score":0.024111843,"about_ca_system_score_codex":0.000039057624,"about_ca_system_score_gemma":0.00015564042,"threshold_uncertainty_score":0.6010645},"labels":[],"label_agreement":null},{"id":"W3149888290","doi":"","title":"胆膵-膵臓-2.重症急性膵炎におけるbacterial translocationと感染対策","year":2014,"lang":"ja","type":"article","venue":"Canadian parliamentary review","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Chromosomal translocation; Bacterial translocation; Chemistry; Cell biology; Biology; Genetics; Gene","score_opus":0.009641674615371049,"score_gpt":0.22391000733344582,"score_spread":0.21426833271807477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3149888290","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.36940968,0.5473884,0.00025556347,0.059540708,0.007868666,0.003971995,0.0019455141,0.00007746778,0.009542032],"genre_scores_gemma":[0.75134045,0.22218113,0.00027725587,0.02154851,0.0017905793,0.00007702685,0.002036613,0.00008187865,0.00066655374],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99709123,0.0002465054,0.00072306255,0.0008796297,0.00016219068,0.00089739705],"domain_scores_gemma":[0.9977174,0.000011446467,0.00020503756,0.0011175215,0.000115102506,0.0008335271],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004852291,0.00052701886,0.0006709607,0.000116556344,0.0002070296,0.000083034465,0.0007144252,0.0006406275,0.0017620632],"category_scores_gemma":[0.00007229429,0.0005513342,0.0003018643,0.00025050467,0.00024254504,0.000008268544,0.0000825228,0.00027064557,0.00045336364],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000984604,0.0001766297,0.00080824946,0.0036330204,0.0006346695,0.000028210628,0.0000613587,0.0000026748735,0.24618839,0.00030317932,0.23943871,0.50862646],"study_design_scores_gemma":[0.0005875902,0.00053054275,0.0005016999,0.0011089445,0.0002880993,0.000048449914,0.000016138036,0.00001075199,0.01667797,0.00002697135,0.9795584,0.00064440974],"about_ca_topic_score_codex":0.015880343,"about_ca_topic_score_gemma":0.10604482,"teacher_disagreement_score":0.7401197,"about_ca_system_score_codex":0.00014470435,"about_ca_system_score_gemma":0.0007344588,"threshold_uncertainty_score":0.9996938},"labels":[],"label_agreement":null},{"id":"W3153941843","doi":"10.1016/j.jbc.2021.100673","title":"The Escherichia coli S2P intramembrane protease RseP regulates ferric citrate uptake by cleaving the sigma factor regulator FecR","year":2021,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; Institute of Genetics; Japan Science and Technology Agency; Japan Society for the Promotion of Science","keywords":"Operon; Biology; Escherichia coli; Biochemistry; Chemistry; Gene","score_opus":0.01157422514152909,"score_gpt":0.22400815612662556,"score_spread":0.21243393098509647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3153941843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99156123,0.0045486884,0.00005318218,0.0032864267,0.0002280483,0.00013477824,0.000036636622,0.000012309953,0.0001387193],"genre_scores_gemma":[0.9959688,0.0020166717,0.00028023074,0.00033517665,0.0006526249,0.000009758005,0.000036785146,0.000019666026,0.0006802598],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833274,0.0001328089,0.0006021279,0.00034181043,0.0001847613,0.00040575143],"domain_scores_gemma":[0.99854696,0.00006575089,0.0004747877,0.0004796973,0.00027445602,0.00015837833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003933769,0.00026513895,0.00030972192,0.000008568108,0.00026693894,0.0001345595,0.0006564675,0.000662446,0.00009829786],"category_scores_gemma":[0.0006404016,0.00013776842,0.00026933843,0.0001666379,0.0004270348,0.0000046218365,0.00024862195,0.0005574098,0.0000019111071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002078312,0.00008644283,0.0001396314,0.000015361831,0.00011888173,0.000020465566,0.0000072212006,0.0000061219366,0.9948416,0.000015864729,0.0015128335,0.0030277749],"study_design_scores_gemma":[0.00038376366,0.0002544086,0.0016949811,0.000019805038,0.00002464045,0.00019008557,0.00010761496,0.0000123916425,0.90733635,0.00023182841,0.08955635,0.00018775414],"about_ca_topic_score_codex":0.0000017325652,"about_ca_topic_score_gemma":0.000001506055,"teacher_disagreement_score":0.08804352,"about_ca_system_score_codex":0.000027967242,"about_ca_system_score_gemma":0.00018815343,"threshold_uncertainty_score":0.5618033},"labels":[],"label_agreement":null},{"id":"W3155815658","doi":"10.1007/s00294-021-01183-2","title":"A snapshot of the λ T4rII exclusion (Rex) phenotype in Escherichia coli","year":2021,"lang":"en","type":"review","venue":"Current Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Bacteriophage; Escherichia coli; Lysogen; Phenotype; Population; Lysogenic cycle; Genetics; Microbiology; Gene","score_opus":0.040391146324324265,"score_gpt":0.3197056354322505,"score_spread":0.2793144891079262,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3155815658","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.014235786,0.98312956,0.00002061887,0.000022422144,0.001789016,0.0005898574,0.0000981882,0.000004618141,0.0001099123],"genre_scores_gemma":[0.0011059273,0.9974824,0.00027241334,0.000021174927,0.00040095396,0.000042404765,0.00055984326,0.000053333795,0.00006153105],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99792016,0.00023631807,0.00071855274,0.00059184595,0.00018228631,0.0003508397],"domain_scores_gemma":[0.99833333,0.000014478974,0.00042502815,0.0010561625,0.00010949173,0.0000615021],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00016443718,0.00042278107,0.00095219567,0.0000825656,0.00005013183,0.0000196843,0.00081562356,0.00084977166,0.00005128262],"category_scores_gemma":[0.000084104475,0.00031329907,0.00046120095,0.00047691297,0.00018381572,7.5603475e-7,0.0012346342,0.0004425441,0.0000047213475],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000077789955,0.0002579889,0.00005873795,0.0033390336,0.000100371835,0.0000020436757,0.00001922144,0.000007652796,0.033291005,0.00008100409,0.0017327052,0.9611025],"study_design_scores_gemma":[0.00020171478,0.000095814576,0.000059680056,0.002162783,0.00019689159,0.000005677803,0.0000055908113,0.0000055504793,0.008045998,0.000019277588,0.9888644,0.00033657148],"about_ca_topic_score_codex":0.0000036134784,"about_ca_topic_score_gemma":0.000034208548,"teacher_disagreement_score":0.9871317,"about_ca_system_score_codex":0.000033666125,"about_ca_system_score_gemma":0.0005967671,"threshold_uncertainty_score":0.99993193},"labels":[],"label_agreement":null},{"id":"W3157088446","doi":"10.1016/j.jbc.2021.100700","title":"ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis","year":2021,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Regina","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"FtsZ; Peptidoglycan; Biology; Cell division; Biogenesis; Cell biology; Transmembrane protein; Transmembrane domain; Bacterial cell structure; Protein structure; Biochemistry; Cell wall; Cell; Genetics; Amino acid; Bacteria; Gene; Receptor","score_opus":0.01494179266185998,"score_gpt":0.22826577212545965,"score_spread":0.21332397946359966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3157088446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99779725,0.0003547081,0.00035222474,0.0008831007,0.000121315265,0.00014735626,0.000019357734,0.000007034104,0.00031767096],"genre_scores_gemma":[0.995781,0.00012789568,0.003202069,0.00016518829,0.00051018165,0.000018093082,0.000015916043,0.000017122924,0.00016253252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847543,0.000071400056,0.0005549095,0.00037350628,0.00015996561,0.00036478604],"domain_scores_gemma":[0.9990305,0.000034916415,0.00029535702,0.0003417302,0.00016537933,0.00013214511],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004509719,0.00022911152,0.00032777313,0.000032193813,0.00007527469,0.00006310713,0.0005148003,0.0005542813,0.000076931115],"category_scores_gemma":[0.00051196176,0.00015039252,0.0002616181,0.00019483648,0.00010259472,0.000004184149,0.00047867547,0.00043917715,0.0000038498565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001439611,0.00016158524,0.0010804189,0.000028549308,0.00003028545,0.000043416236,0.000018617022,0.00001631639,0.99600875,0.000004096976,0.000027927354,0.0024360826],"study_design_scores_gemma":[0.0004110003,0.00026151698,0.0040916773,0.00013435246,0.000012652315,0.00015395493,0.00011293961,0.000006823701,0.9843124,0.000033827662,0.010256877,0.0002119876],"about_ca_topic_score_codex":0.000004041423,"about_ca_topic_score_gemma":0.0000070779615,"teacher_disagreement_score":0.011696354,"about_ca_system_score_codex":0.000039329832,"about_ca_system_score_gemma":0.00013203021,"threshold_uncertainty_score":0.61328286},"labels":[],"label_agreement":null},{"id":"W3157089598","doi":"10.1016/j.isci.2021.102476","title":"Proteolysis and multimerization regulate signaling along the two-component regulatory system AdeRS","year":2021,"lang":"en","type":"article","venue":"iScience","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Science Foundation of Shaanxi Province; National Natural Science Foundation of China; Lanzhou University","keywords":"Histidine kinase; Two-component regulatory system; Response regulator; Autophosphorylation; Proteasome; Efflux; Regulator; Cell biology; Kinase; Regulation of gene expression; Biology; Component (thermodynamics); Proteolysis; Downregulation and upregulation; Chemistry; Gene; Computational biology; Genetics; Biochemistry; Protein kinase A; Mutant; Physics","score_opus":0.007543899315226481,"score_gpt":0.21424713399841291,"score_spread":0.20670323468318644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3157089598","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99608576,0.0011201501,0.0019044235,0.0005252287,0.00014477855,0.0001337336,0.0000031696927,0.000015280237,0.00006746672],"genre_scores_gemma":[0.9979208,0.0000503336,0.0017036455,0.000089396846,0.00008256149,0.000011966721,0.000012949193,0.0000070549822,0.00012125536],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992007,0.000058240945,0.00013563696,0.00033600756,0.000105415354,0.00016401918],"domain_scores_gemma":[0.9995132,0.0000055521464,0.00006675517,0.00031324386,0.000063640844,0.00003762486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020308216,0.00008629049,0.00008002858,0.000019590678,0.00018559385,0.00005025602,0.00015642642,0.000087257344,0.000003827601],"category_scores_gemma":[0.000030612242,0.00006400686,0.000031361484,0.00015027603,0.00023313984,0.0000032487674,0.0001627226,0.0000502865,0.0000018969873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000006071016,0.0000070749793,0.00035843663,0.000010101452,0.000009462064,0.0000027680437,0.000041518593,0.00020381705,0.99427956,0.00016549004,0.000012522304,0.004903175],"study_design_scores_gemma":[0.00016611899,0.0000335063,0.004000752,0.000020945226,0.000012079826,0.000052813106,0.00025437438,0.001560461,0.9921072,0.000013696859,0.0016776313,0.00010039261],"about_ca_topic_score_codex":0.000022217157,"about_ca_topic_score_gemma":0.00002126811,"teacher_disagreement_score":0.0048027826,"about_ca_system_score_codex":0.000008700778,"about_ca_system_score_gemma":0.00005309403,"threshold_uncertainty_score":0.2610124},"labels":[],"label_agreement":null},{"id":"W3157863352","doi":"10.1101/2021.05.06.442821","title":"Growth-dependent heterogeneity in the DNA damage response in <i>Escherichia coli</i>","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Biotechnology and Biological Sciences Research Council; Engineering and Physical Sciences Research Council; Medical Research Council; UK Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Darwin Trust of Edinburgh; Wellcome Trust","keywords":"SOS response; Regulon; DNA damage; Escherichia coli; Biology; Cell division; DNA; DNA repair; Bacteria; Cell biology; Cell; Microbiology; Genetics; Gene","score_opus":0.010170879308584431,"score_gpt":0.21798559707116283,"score_spread":0.2078147177625784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3157863352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99645156,0.0012548497,0.000087989494,0.0007124563,0.0006626515,0.00065236166,0.00013308518,0.000039187795,0.000005882379],"genre_scores_gemma":[0.9968131,0.00087089086,0.0008583983,0.00088594924,0.0002628121,0.00022022823,0.0000032468974,0.00008274117,0.000002618853],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99645483,0.0008455875,0.0005955417,0.0012085726,0.00027107607,0.0006244131],"domain_scores_gemma":[0.9976827,0.000035885787,0.0002488723,0.0017170837,0.00020611216,0.00010933508],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0015224959,0.0005316495,0.0004928579,0.00018787559,0.0000765875,0.00020884459,0.0011342498,0.0013805284,0.000010236806],"category_scores_gemma":[0.00034812288,0.0005030289,0.00016704047,0.00047661172,0.00016889999,0.0000066868715,0.0011305806,0.00094141613,0.000007880055],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034851374,0.00024615802,0.005063977,0.00007478326,0.000051136165,0.00016795936,0.000010539101,0.000023377106,0.99392444,0.000029548584,0.000058728758,8.5131296e-7],"study_design_scores_gemma":[0.0005709078,0.00014667219,0.19424544,0.000077471996,0.000023361572,6.88806e-8,0.000011204456,0.000018374578,0.8018145,9.995248e-7,0.0026069034,0.00048408282],"about_ca_topic_score_codex":0.00010575641,"about_ca_topic_score_gemma":0.00017499925,"teacher_disagreement_score":0.19210991,"about_ca_system_score_codex":0.000103740145,"about_ca_system_score_gemma":0.00061775814,"threshold_uncertainty_score":0.9999159},"labels":[],"label_agreement":null},{"id":"W3158665167","doi":"10.3389/fmolb.2021.626600","title":"Structural Profiling of Bacterial Effectors Reveals Enrichment of Host-Interacting Domains and Motifs","year":2021,"lang":"en","type":"article","venue":"Frontiers in Molecular Biosciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Canada Foundation for Innovation","keywords":"Effector; Biology; Virulence; Host (biology); Computational biology; Eukaryote; Pathogen; Cell biology; Genetics; Gene; Genome","score_opus":0.004401547499215813,"score_gpt":0.22900289540055419,"score_spread":0.22460134790133837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3158665167","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961533,0.0011704053,0.0014727715,0.000050246206,0.00093855406,0.00014436171,0.000021515294,0.0000031935604,0.000045667723],"genre_scores_gemma":[0.9657165,0.00016526916,0.034018446,0.000017521848,0.00003480357,0.0000040344,0.000026306814,0.000007153636,0.000009987146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889725,0.000097159704,0.00029562716,0.0003677095,0.0001332188,0.00020901319],"domain_scores_gemma":[0.9994996,0.0000090859385,0.00016462652,0.0002206222,0.000065943495,0.00004009018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021964665,0.00012644571,0.00024041712,0.000091220405,0.000033361917,0.000018505812,0.00018970674,0.00015617888,0.000004143528],"category_scores_gemma":[0.00016405182,0.000114286915,0.00005964046,0.00022174224,0.00029467378,0.0000048491147,0.00020395956,0.00006726818,5.603008e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035359328,0.000019139414,0.02588282,0.00003765405,0.000022147335,0.0000060556,0.000030498286,0.000010682418,0.97186285,0.000058532914,0.00001172481,0.002022561],"study_design_scores_gemma":[0.0003012967,0.0003062997,0.00888177,0.000034282853,0.000011027219,0.000010665228,0.0002706079,0.00008421913,0.9897563,0.0001074216,0.00011620359,0.00011992607],"about_ca_topic_score_codex":0.000013058495,"about_ca_topic_score_gemma":0.000008008865,"teacher_disagreement_score":0.032545675,"about_ca_system_score_codex":0.000009420912,"about_ca_system_score_gemma":0.000067453315,"threshold_uncertainty_score":0.4660485},"labels":[],"label_agreement":null},{"id":"W3159653435","doi":"10.1093/jac/dkab124","title":"Thiocillin and micrococcin exploit the ferrioxamine receptor of <i>Pseudomonas aeruginosa</i> for uptake","year":2021,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster Children's Hospital","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pyoverdine; Siderophore; Pseudomonas aeruginosa; Bacterial outer membrane; Microbiology; Mutant; Receptor; Biology; Bacteria; Antimicrobial; Acinetobacter baumannii; Chemistry; Biochemistry; Escherichia coli; Genetics; Gene","score_opus":0.009237050658098035,"score_gpt":0.228882457349833,"score_spread":0.21964540669173496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3159653435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99151164,0.0015362723,0.0011236101,0.0053029144,0.00030967136,0.00014602172,0.00004450792,0.0000024915053,0.000022845048],"genre_scores_gemma":[0.9726724,0.010060062,0.014183551,0.002049582,0.00067404273,0.0000024471813,0.000028997954,0.000035416073,0.00029351984],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991199,0.000035552464,0.00042816505,0.00017549384,0.000067381305,0.00017350735],"domain_scores_gemma":[0.9990523,0.000020995378,0.0003427643,0.00020872969,0.00033312032,0.000042089676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002591812,0.00014432736,0.00028542863,0.000034376706,0.000057077898,0.000025450996,0.00021969157,0.00022823058,0.000017869274],"category_scores_gemma":[0.000046909874,0.00010394102,0.00018721017,0.000083427185,0.00013428406,0.0000038678427,0.00005842739,0.0001226804,4.4199524e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038561717,0.000091113965,0.00011210779,0.000025230467,0.00012598203,0.0000016205811,0.00006359281,0.0000028683453,0.9805082,0.000023623488,0.011100509,0.0075595365],"study_design_scores_gemma":[0.0013575098,0.00035128774,0.00015168871,0.00002621623,0.000021530712,0.000147168,0.00006031581,0.0000015778203,0.79328275,0.00003175118,0.20447487,0.000093346855],"about_ca_topic_score_codex":0.0000026023806,"about_ca_topic_score_gemma":0.000009060264,"teacher_disagreement_score":0.19337435,"about_ca_system_score_codex":0.0000069613843,"about_ca_system_score_gemma":0.00012834529,"threshold_uncertainty_score":0.42385918},"labels":[],"label_agreement":null},{"id":"W3160699512","doi":"10.1093/molbev/msab136","title":"Xenogeneic Silencing and Bacterial Genome Evolution: Mechanisms for DNA Recognition Imply Multifaceted Roles of Xenogeneic Silencers","year":2021,"lang":"en","type":"review","venue":"Molecular Biology and Evolution","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; National Natural Science Foundation of China","keywords":"Biology; Horizontal gene transfer; Genome; Genetics; genomic DNA; DNA; Mobile genetic elements; Gene; Gene silencing","score_opus":0.016192962001201114,"score_gpt":0.27729744914210797,"score_spread":0.26110448714090684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3160699512","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12499635,0.84907246,0.02389254,0.00001965963,0.00037043483,0.0008680199,0.0007555451,0.000019852627,0.0000051536313],"genre_scores_gemma":[0.06284612,0.92711365,0.0044472315,0.000022803257,0.0003061756,0.00021070677,0.0049690437,0.00006690123,0.000017373139],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99749076,0.00032084188,0.00066206563,0.0009971773,0.00007401532,0.0004551425],"domain_scores_gemma":[0.9987859,0.000027967311,0.0004637867,0.00041187927,0.00020628501,0.000104155624],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00034780626,0.0005111135,0.001083497,0.00021052652,0.00016994523,0.000024396702,0.0002100189,0.0018240452,0.000013176168],"category_scores_gemma":[0.00013528,0.0004893103,0.00034097288,0.00018198612,0.00031184766,0.000005628977,0.00030709687,0.00018156637,0.0000021087117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006794991,0.00003186121,0.0000023818461,0.0010145635,0.0002869864,0.0000018353828,0.000009183315,0.0000013399798,0.89918375,0.0004709583,0.0000066164853,0.09892254],"study_design_scores_gemma":[0.0029282705,0.0044492283,0.00021137059,0.0029422087,0.0032500934,0.00064191676,0.00026608992,0.00006075973,0.7699491,0.0052839513,0.20727767,0.002739369],"about_ca_topic_score_codex":0.00002070452,"about_ca_topic_score_gemma":0.000027453729,"teacher_disagreement_score":0.20727104,"about_ca_system_score_codex":0.00007274421,"about_ca_system_score_gemma":0.00029593162,"threshold_uncertainty_score":0.99975586},"labels":[],"label_agreement":null},{"id":"W3162066309","doi":"10.1371/journal.ppat.1009532","title":"Emerging and divergent roles of pyrophosphorylated nucleotides in bacterial physiology and pathogenesis","year":2021,"lang":"en","type":"review","venue":"PLoS Pathogens","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Effector; Stringent response; Guanosine; Nucleotide; Biology; Bacteria; Biochemistry; Cell biology; Metabolism; Microbial metabolism; Microbiology; Escherichia coli; Genetics; Gene","score_opus":0.015819898361729843,"score_gpt":0.24784926010617261,"score_spread":0.23202936174444277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3162066309","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4216681,0.5777813,7.329285e-7,0.000005766232,0.00010982915,0.0001957263,0.00022702332,0.000005533789,0.0000059245167],"genre_scores_gemma":[0.013246445,0.98566103,0.00032719332,0.000011357391,0.00014835574,0.000036678113,0.00049824506,0.00005550937,0.000015198042],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99811894,0.00019203924,0.00056780974,0.000730854,0.00007850599,0.000311855],"domain_scores_gemma":[0.9991574,0.000020032461,0.00028100074,0.00039885624,0.00006574458,0.00007690888],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00011773172,0.00040197698,0.0012873175,0.00013533236,0.000044641314,0.00001784313,0.00018296357,0.00080966845,0.000041465326],"category_scores_gemma":[0.000076959564,0.00036241385,0.00018783026,0.00017195,0.0001820423,0.0000020908021,0.00062453555,0.00015528883,0.0000014002658],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017589884,0.00007777769,0.00007202649,0.0015250341,0.00017122248,0.000017778131,0.00002234368,2.8041023e-7,0.72222733,0.000011573456,0.0000092538785,0.27584776],"study_design_scores_gemma":[0.00087002234,0.00068580586,0.00075735385,0.0035461013,0.0011665234,0.00011603677,0.00010292961,0.000011408082,0.18004277,0.000040939165,0.8113127,0.0013474288],"about_ca_topic_score_codex":0.000008131641,"about_ca_topic_score_gemma":0.000029242225,"teacher_disagreement_score":0.81130344,"about_ca_system_score_codex":0.000011621594,"about_ca_system_score_gemma":0.00010546689,"threshold_uncertainty_score":0.99988276},"labels":[],"label_agreement":null},{"id":"W3164528360","doi":"10.1128/ecosalplus.esp-0011-2020","title":"Dynamics of Proteins and Macromolecular Machines in Escherichia coli","year":2021,"lang":"en","type":"article","venue":"EcoSal Plus","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Macromolecule; Macromolecular Substances; Function (biology); Intracellular; Macromolecular crowding; Molecular machine; Protein function","score_opus":0.0044053331454983885,"score_gpt":0.21271733602520085,"score_spread":0.20831200287970247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3164528360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977845,0.0007665486,0.0002954208,0.00053620286,0.00008489179,0.0001125972,0.000034167235,0.0000050907047,0.00038058564],"genre_scores_gemma":[0.9964712,0.0002557349,0.0028443884,0.000082712824,0.000040851464,0.000008099245,0.00011079554,0.000012799029,0.00017336801],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939907,0.000031832216,0.00015609879,0.0002276028,0.00004379194,0.0001415829],"domain_scores_gemma":[0.999682,0.0000027780973,0.000046129295,0.00019766916,0.00003937478,0.000032025957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006214754,0.00009433315,0.00014448017,0.000026999987,0.000016582673,0.000010318911,0.00008462803,0.000197958,0.000016981612],"category_scores_gemma":[0.000045170134,0.00009524074,0.000032003165,0.00009733312,0.00006704673,0.0000010900717,0.00017902967,0.000077724675,0.0000012503501],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003815872,0.00003954191,0.0012694029,0.000024387065,0.000017048162,0.000020946325,0.000010263072,0.000012011171,0.9962901,0.00057102053,0.000025707777,0.0016814123],"study_design_scores_gemma":[0.0006794681,0.00020242028,0.008322012,0.0000136244225,0.000008415779,0.00002700144,0.000028695344,0.0012368605,0.98638195,0.000627247,0.0023142563,0.00015808009],"about_ca_topic_score_codex":0.000046076097,"about_ca_topic_score_gemma":0.0012001276,"teacher_disagreement_score":0.009908181,"about_ca_system_score_codex":0.0000104164865,"about_ca_system_score_gemma":0.00008507502,"threshold_uncertainty_score":0.38838047},"labels":[],"label_agreement":null},{"id":"W3174607828","doi":"10.3389/fmicb.2021.697803","title":"Single-Target Regulators Constitute the Minority Group of Transcription Factors in Escherichia coli K-12","year":2021,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Genome; Biology; Escherichia coli; Genetics; Gene; Prokaryote; Promoter; Computational biology; Transcription factor; Bacterial genome size; Gene expression","score_opus":0.007673375640748721,"score_gpt":0.1923809916463888,"score_spread":0.1847076160056401,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174607828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950032,0.0019274312,0.0010484974,0.0002093151,0.0014066971,0.00017371679,0.00007521579,0.000006091296,0.0001498044],"genre_scores_gemma":[0.9940858,0.00026777826,0.0049808947,0.000122028214,0.00005678174,0.000007505346,0.00037242236,0.000010232135,0.00009657183],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987651,0.00018489285,0.00035074388,0.00037354868,0.000028020146,0.00029771135],"domain_scores_gemma":[0.9994984,0.000008687051,0.00010360028,0.0003218346,0.000041039933,0.000026424626],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016949866,0.00016879522,0.00030506167,0.00007958349,0.00003313417,0.000007559559,0.0002411113,0.00055718556,0.000015380603],"category_scores_gemma":[0.000049962455,0.00014114245,0.00009208009,0.0001918861,0.0004917222,0.0000029816235,0.00009004174,0.00018812067,5.4847453e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008220905,0.00012384162,0.07164801,0.000015596204,0.00003757576,0.0000042380684,0.000055375604,0.000009759044,0.92660767,0.00013537848,0.00092876854,0.00035158268],"study_design_scores_gemma":[0.00063648087,0.00017551583,0.017742509,0.000010861663,0.000012480996,0.000012431035,0.00026707203,0.000007875004,0.93352544,0.00021112055,0.047236875,0.00016133864],"about_ca_topic_score_codex":0.000056222852,"about_ca_topic_score_gemma":0.0006587431,"teacher_disagreement_score":0.0539055,"about_ca_system_score_codex":0.00003259694,"about_ca_system_score_gemma":0.00008023751,"threshold_uncertainty_score":0.5755622},"labels":[],"label_agreement":null},{"id":"W3175610258","doi":"10.14288/ujemi.v25i.193260","title":"Investigating the role of MlaA in SDS-EDTA resistance pathways in Escherichia coli","year":2020,"lang":"en","type":"article","venue":"Open Collections","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Bacterial outer membrane; Mutant; Porin; Spheroplast; Biology; Escherichia coli; Cell membrane; Cell biology; Biochemistry; Microbiology; Cell; Gene","score_opus":0.015996669038151914,"score_gpt":0.22552957337830243,"score_spread":0.2095329043401505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175610258","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9593998,0.00038706264,0.000024529512,0.001726936,0.00006599806,0.000490739,0.0000386957,0.0000061160513,0.03786011],"genre_scores_gemma":[0.99656636,0.00009357792,0.0012508671,0.00032229844,0.00004694305,0.00006403606,0.000012845394,0.000010166799,0.0016328992],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993301,0.00006745108,0.0002083482,0.00021495497,0.000044445336,0.00013468086],"domain_scores_gemma":[0.99966115,0.0000108695185,0.00007302685,0.00018959954,0.00003166472,0.000033683053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000120675955,0.000076582764,0.00012442874,0.000018928082,0.00017629101,0.00007685792,0.0003634549,0.00013061798,0.000022050895],"category_scores_gemma":[0.00014606764,0.000066916014,0.000025471285,0.0007275469,0.000087414366,0.0000028456068,0.00028223425,0.00013011218,9.404943e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003611969,0.000035845045,0.0007661686,0.000004699298,0.000008941795,5.382168e-7,0.0001194071,0.000048222882,0.99479306,0.00019578771,0.0037746343,0.00021657333],"study_design_scores_gemma":[0.00066430075,0.00023351358,0.0027170763,0.000024796858,0.0000067759693,0.0000012107698,0.0008106979,0.00029344214,0.8330296,0.0016939191,0.16036339,0.00016122997],"about_ca_topic_score_codex":0.0010344177,"about_ca_topic_score_gemma":0.01009371,"teacher_disagreement_score":0.16176341,"about_ca_system_score_codex":0.000011184741,"about_ca_system_score_gemma":0.0001454078,"threshold_uncertainty_score":0.56325275},"labels":[],"label_agreement":null},{"id":"W3178240502","doi":"10.3389/fmicb.2021.696522","title":"Horizontal Transmission of Stress Resistance Genes Shape the Ecology of Beta- and Gamma-Proteobacteria","year":2021,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Vetenskapsrådet; Canada Excellence Research Chairs, Government of Canada; Agriculture Funding Consortium","keywords":"Biology; Gene; Horizontal gene transfer; Locus (genetics); Genetics; Genome; Proteobacteria","score_opus":0.009010381487598272,"score_gpt":0.23752449089628214,"score_spread":0.22851410940868386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3178240502","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03085454,0.9671614,0.000117804004,0.000063600615,0.00068962935,0.00055081164,0.00054004375,0.0000036620181,0.000018506815],"genre_scores_gemma":[0.00089104736,0.9933362,0.004585239,0.000013923939,0.00010253091,0.000045033747,0.0008837284,0.000035387482,0.00010693781],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997749,0.00045754208,0.0007954862,0.00062715553,0.000034065924,0.00033676496],"domain_scores_gemma":[0.99882776,0.000028361961,0.0005120934,0.00052221766,0.00007288954,0.00003665745],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002498448,0.00037500059,0.0016422515,0.000139992,0.00003980941,0.0000071939735,0.0005465898,0.0014868308,0.000021571552],"category_scores_gemma":[0.000026819152,0.00026870018,0.00028373546,0.00017359678,0.0007330037,0.0000016630138,0.00030431442,0.0002876927,3.593351e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009210076,0.0000824411,0.00024608625,0.0029941848,0.0003590537,0.000008154628,0.00002513506,2.1320746e-7,0.49145862,0.00003787628,0.0011752008,0.50352097],"study_design_scores_gemma":[0.0002989301,0.00028749157,0.000048786533,0.000933346,0.00019961732,0.000058578767,0.000040812563,4.4122083e-7,0.06266572,0.000014339048,0.93519354,0.00025839853],"about_ca_topic_score_codex":0.00000785124,"about_ca_topic_score_gemma":0.000098095676,"teacher_disagreement_score":0.9340183,"about_ca_system_score_codex":0.000020250893,"about_ca_system_score_gemma":0.00023077069,"threshold_uncertainty_score":0.9999765},"labels":[],"label_agreement":null},{"id":"W3178267892","doi":"10.3389/fcimb.2021.696533","title":"Uncovering Transcriptional Regulators and Targets of sRNAs Using an Integrative Data-Mining Approach: H-NS-Regulated RseX as a Case Study","year":2021,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Welch Foundation; National Institutes of Health; National Science Foundation","keywords":"Biology; Computational biology; Gene; Transfer RNA; Transcriptional regulation; Small RNA; Regulation of gene expression; RNA; Genetics; Gene expression; microRNA","score_opus":0.016153834670943626,"score_gpt":0.2440144420023526,"score_spread":0.22786060733140895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3178267892","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98848,0.0018564623,0.008932682,0.000009199645,0.0004443591,0.0001926914,0.000058203128,0.000007922907,0.000018481507],"genre_scores_gemma":[0.99099857,0.00029864945,0.007943285,0.000022498556,0.000057370635,0.0000040248456,0.00062304316,0.000015226732,0.000037318252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986967,0.00021373227,0.00029528316,0.0005799746,0.000027855924,0.00018648124],"domain_scores_gemma":[0.99946636,0.000005398148,0.00010213616,0.00031150624,0.00006730758,0.000047278805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002385611,0.00018092191,0.00029364834,0.00012522776,0.000086323096,0.000018866192,0.00008322553,0.00035182346,0.000006499135],"category_scores_gemma":[0.000032766842,0.00017485487,0.000039047427,0.00014974804,0.00023259585,0.000014790003,0.00018369623,0.00013744607,7.080607e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000070087866,0.00026781522,0.023310775,0.000019644622,0.00014563231,0.000064231564,0.00032367755,0.00011806164,0.97387105,0.000009808958,0.00002849279,0.0017707322],"study_design_scores_gemma":[0.0030669076,0.0017945085,0.0022577925,0.000037123347,0.00019415242,0.006507021,0.009947181,0.0032552658,0.96697605,0.00011255927,0.0052388636,0.0006126059],"about_ca_topic_score_codex":0.00031469623,"about_ca_topic_score_gemma":0.00025214037,"teacher_disagreement_score":0.021052983,"about_ca_system_score_codex":0.000016980624,"about_ca_system_score_gemma":0.00007676448,"threshold_uncertainty_score":0.71303743},"labels":[],"label_agreement":null},{"id":"W3182894924","doi":"10.1101/756452","title":"Pulling the strings of cell cycle: a non-coding RNA, CcnA, modulates the master regulators CtrA and GcrA in <i>Caulobacter crescentus</i>","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Caulobacter crescentus; Biology; Cell cycle; Regulator; Cell biology; Cell division; Computational biology; Genetics; Cell; Gene","score_opus":0.006180167697475017,"score_gpt":0.18387574715975624,"score_spread":0.17769557946228123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3182894924","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964194,0.0013789712,0.00028045,0.00043215207,0.0005977119,0.0007608712,0.00009624996,0.000021870213,0.000012287994],"genre_scores_gemma":[0.9973331,0.0015177559,0.00055006857,0.00017218514,0.00028079032,0.00004725843,0.0000012422742,0.0000845031,0.0000130867475],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99771285,0.00010774931,0.0005763047,0.0008695191,0.00020102925,0.00053251826],"domain_scores_gemma":[0.9978591,0.000029098259,0.0004590978,0.0014007041,0.00016688183,0.00008509014],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00056255184,0.0004879352,0.00047162818,0.00012556785,0.0001018529,0.00014356403,0.00080261024,0.00093462283,0.000007281879],"category_scores_gemma":[0.00004470631,0.00035600262,0.00014790305,0.00022903942,0.00024299085,0.000008319402,0.0011466154,0.0006854942,0.0000041917324],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051077266,0.00005490677,0.0062341755,0.00019995794,0.00007342311,0.000003362018,0.0000124814605,0.000111136986,0.9931582,0.000035133922,0.00005221709,0.000013920383],"study_design_scores_gemma":[0.00050138665,0.00008366897,0.046595626,0.00020572753,0.00006439673,6.235361e-8,0.000010379308,0.00045860597,0.9494384,0.000003898977,0.0022177275,0.00042015171],"about_ca_topic_score_codex":0.000086910695,"about_ca_topic_score_gemma":0.000010767338,"teacher_disagreement_score":0.04371984,"about_ca_system_score_codex":0.000046918518,"about_ca_system_score_gemma":0.00019611625,"threshold_uncertainty_score":0.9998892},"labels":[],"label_agreement":null},{"id":"W3183897315","doi":"10.1016/j.jlr.2021.100097","title":"S-palmitoylation of NOD2 controls its localization to the plasma membrane","year":2021,"lang":"en","type":"article","venue":"Journal of Lipid Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; University of Toronto; St. Michael's Hospital","funders":"Canadian Institutes of Health Research","keywords":"Palmitoylation; NOD2; Chemistry; Kinase; Biochemistry; Cell biology; Molecular biology; Biology; Receptor; Cysteine; Enzyme","score_opus":0.03402779247056437,"score_gpt":0.33039451354004257,"score_spread":0.2963667210694782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3183897315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912497,0.0006834847,0.0013780299,0.0057701417,0.00040081728,0.0001348882,0.000009735155,0.000001275135,0.00037192027],"genre_scores_gemma":[0.9973792,0.00086421665,0.0003145462,0.00009351137,0.0009292435,0.0000023086925,0.000008838557,0.000008904735,0.00039924402],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988188,0.0002267744,0.00032229017,0.000116889096,0.00034125085,0.00017397605],"domain_scores_gemma":[0.9981972,0.000042660096,0.00013101092,0.00020742742,0.001357753,0.00006393508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010421796,0.000059083945,0.0001409907,0.00010302837,0.00006820437,0.000026945681,0.00025501518,0.00016809431,0.000041729916],"category_scores_gemma":[0.0007954861,0.00004013731,0.00007059994,0.00031629513,0.0000620714,0.0000028869622,0.00013872125,0.00019872436,0.0000070632755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020242033,0.000049390746,0.00020818823,0.000014614477,0.00004374047,0.0000043464033,0.00002940987,0.0006139235,0.99352306,0.00010477403,0.0019963693,0.0032097416],"study_design_scores_gemma":[0.0003939965,0.0005122574,0.00052815466,0.000020499376,0.000006503612,0.000051260413,0.00007319175,0.00020717895,0.8376653,0.000021546279,0.16048251,0.000037562935],"about_ca_topic_score_codex":0.0000021812348,"about_ca_topic_score_gemma":0.000020495963,"teacher_disagreement_score":0.15848614,"about_ca_system_score_codex":0.000012260771,"about_ca_system_score_gemma":0.00021883231,"threshold_uncertainty_score":0.1636752},"labels":[],"label_agreement":null},{"id":"W3184091685","doi":"10.1016/b978-0-323-85679-9.00005-2","title":"Genome instability in bacteria: Causes and consequences","year":2021,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"","keywords":"Genome; Genome instability; Biology; Bacteria; Gene; Genetics; Bacterial genome size; Mobile genetic elements; DNA; DNA damage","score_opus":0.013031668792217364,"score_gpt":0.22572381796113267,"score_spread":0.2126921491689153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3184091685","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5170478,0.008152868,6.665347e-7,0.00019146319,0.00046796657,0.00046778916,0.00017264234,0.000018769364,0.47348],"genre_scores_gemma":[0.2274794,0.0070600654,0.00066747505,0.00041555174,0.0006226561,0.00004453249,0.00043414542,0.0000988346,0.76317734],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99861735,0.00003613841,0.00035811414,0.0006610506,0.00008229206,0.0002450381],"domain_scores_gemma":[0.99922013,0.000008325666,0.00012912403,0.0004993191,0.00006957096,0.00007350008],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001418135,0.00032613834,0.00041922202,0.00007173728,0.00004229034,0.000041031468,0.0001828299,0.000900053,0.000096574695],"category_scores_gemma":[0.000026875156,0.00031816325,0.00008784613,0.0000105551435,0.0005542647,0.0000011636588,0.00036401558,0.00026229845,0.000005744819],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033294444,0.000011394063,0.000092502865,0.00007452908,0.00007774443,0.000050652445,0.00002270719,1.0628049e-7,0.8287851,0.00077143474,0.0000049632567,0.17007557],"study_design_scores_gemma":[0.0002593932,0.00016992855,0.0011029624,0.00007540167,0.000032002277,0.00006568454,0.000010195609,8.9774e-8,0.03391859,0.0013585606,0.9625969,0.0004102936],"about_ca_topic_score_codex":0.000001978614,"about_ca_topic_score_gemma":0.00045836062,"teacher_disagreement_score":0.96259195,"about_ca_system_score_codex":0.000023222372,"about_ca_system_score_gemma":0.00020611363,"threshold_uncertainty_score":0.99992704},"labels":[],"label_agreement":null},{"id":"W3189126572","doi":"10.1146/annurev-micro-041921-012646","title":"Quantitative Control for Stoichiometric Protein Synthesis","year":2021,"lang":"en","type":"article","venue":"Annual Review of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Searle Scholars Program; Howard Hughes Medical Institute; National Institutes of Health; National Science Foundation","keywords":"Computational biology; Operon; Biology; Protein biosynthesis; Transcription (linguistics); Genome; Bacterial genome size; Bacterial protein; Translation (biology); RNA; Genetics; Messenger RNA; Gene","score_opus":0.009941869663049694,"score_gpt":0.27145227996922683,"score_spread":0.2615104103061771,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3189126572","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5790889,0.40209144,0.007157878,0.004420265,0.00049339037,0.0020372213,0.004264994,0.000023478935,0.00042242586],"genre_scores_gemma":[0.90920204,0.06760175,0.017862014,0.0031289656,0.00019626989,0.00037611971,0.0008898514,0.00004884865,0.0006941566],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988627,0.00015923668,0.00036539263,0.00035231063,0.000026798436,0.00023355008],"domain_scores_gemma":[0.9988947,0.000069256326,0.00019706828,0.0003162266,0.00048948405,0.00003329823],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031728158,0.00014758027,0.000448461,0.000063545885,0.00003334025,0.000003121271,0.00020481308,0.00025821946,0.00004960282],"category_scores_gemma":[0.0014543144,0.00012681195,0.00019887918,0.0002291444,0.00014503596,0.0000015098746,0.00009286398,0.000061096296,0.00000896767],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007879807,0.00006661187,0.000010306079,0.0009125284,0.00011698507,0.000001293465,0.00000354263,1.5743692e-7,0.9887035,0.00067980634,0.0024680486,0.006958413],"study_design_scores_gemma":[0.00028844,0.0006220107,0.000024561296,0.0003510715,0.000051493385,0.000030703988,0.000024142033,4.0238666e-7,0.7172898,0.000038058068,0.2811613,0.00011802355],"about_ca_topic_score_codex":0.0000026306802,"about_ca_topic_score_gemma":0.000008624889,"teacher_disagreement_score":0.3344897,"about_ca_system_score_codex":0.000006122643,"about_ca_system_score_gemma":0.00013811093,"threshold_uncertainty_score":0.5171241},"labels":[],"label_agreement":null},{"id":"W3193433627","doi":"10.1111/cmi.13384","title":"Host manipulation by bacterial type <scp>III</scp> and type <scp>IV</scp> secretion system effector proteases","year":2021,"lang":"en","type":"review","venue":"Cellular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Proteases; Effector; Protease; Secretion; Biology; Cell biology; Virulence; Microbiology; Enzyme; Biochemistry; Gene","score_opus":0.012602201060994878,"score_gpt":0.23079918452640824,"score_spread":0.21819698346541336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3193433627","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20354955,0.792271,0.00011154713,0.0000052813257,0.002206388,0.0013207714,0.0004103745,0.000061997256,0.00006308434],"genre_scores_gemma":[0.0071466602,0.9527662,0.00020419511,0.00003860665,0.0013890762,0.000108726665,0.036710825,0.00017076256,0.0014649673],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964382,0.00066828507,0.0007771609,0.0013517223,0.00007282384,0.00069181906],"domain_scores_gemma":[0.9980803,0.000105390776,0.0006307236,0.0007903995,0.00023582192,0.00015736322],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002981483,0.0008305299,0.0016195455,0.00015658287,0.00016960195,0.000107813,0.000437802,0.0031264746,0.000016068945],"category_scores_gemma":[0.0003080821,0.0007553774,0.0003295281,0.00029753285,0.00028676182,0.0000057151897,0.00054949545,0.00045374988,0.000108357344],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001071301,0.000055454606,0.000008008695,0.003012434,0.00031358626,0.00002148095,0.000009996888,1.8351153e-7,0.98104095,0.000034353656,0.005700997,0.009791865],"study_design_scores_gemma":[0.00040981526,0.0007190418,0.0000034281682,0.00086615013,0.00042756725,0.00032436277,0.000025530175,0.0000025359545,0.17779437,0.0000012222041,0.81924605,0.00017989262],"about_ca_topic_score_codex":0.00002331269,"about_ca_topic_score_gemma":0.00000789808,"teacher_disagreement_score":0.8135451,"about_ca_system_score_codex":0.00008529019,"about_ca_system_score_gemma":0.0002920136,"threshold_uncertainty_score":0.9994897},"labels":[],"label_agreement":null},{"id":"W3194469425","doi":"10.1101/2021.08.22.457263","title":"Reconstitution of surface lipoprotein translocation reveals Slam as an outer membrane translocon in Gram-negative bacteria","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; National Institutes of Health; Stockholms Universitet","keywords":"Periplasmic space; Bacterial outer membrane; Translocon; Chromosomal translocation; Biology; Bacteria; Cell biology; Membrane; Inner membrane; Microbiology; Escherichia coli; Biophysics; Biochemistry; Genetics; Gene","score_opus":0.010911916471795149,"score_gpt":0.22390875621894363,"score_spread":0.21299683974714848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3194469425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961754,0.00070873124,0.00093266024,0.00021314503,0.0006928178,0.000993305,0.0002275445,0.00004908048,0.000007310153],"genre_scores_gemma":[0.98809284,0.0014593779,0.009971257,0.00007046501,0.00021343117,0.00010041531,0.000016093134,0.000071304785,0.000004815237],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971683,0.0003075312,0.0007854338,0.0011383134,0.00018683136,0.0004136024],"domain_scores_gemma":[0.99781764,0.000011330891,0.00042075067,0.0011648948,0.00044814966,0.00013722264],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00059064355,0.0004935675,0.00066072936,0.00015633834,0.00005430328,0.00009004028,0.00047371598,0.0015634747,0.00004284519],"category_scores_gemma":[0.00012414479,0.00055914413,0.00016604616,0.00031156727,0.00025046233,0.000019238887,0.0001615125,0.0004868231,0.0000044521344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016902956,0.00021568207,0.00037923115,0.00026241486,0.00010585654,0.000016107591,0.00002543939,0.00009012308,0.9985536,0.00013704141,0.0000040110535,0.00004151149],"study_design_scores_gemma":[0.0007997605,0.0002780374,0.009607194,0.00037587027,0.00005241815,1.3366974e-7,0.000011187929,0.00003840195,0.9877392,0.000009028411,0.00051396055,0.00057478],"about_ca_topic_score_codex":0.00036939172,"about_ca_topic_score_gemma":0.00018227275,"teacher_disagreement_score":0.010814325,"about_ca_system_score_codex":0.00006723127,"about_ca_system_score_gemma":0.0006557895,"threshold_uncertainty_score":0.99973273},"labels":[],"label_agreement":null},{"id":"W3194536848","doi":"10.1002/9781119951438.eibc2441","title":"Bacterial Siderophore‐Binding Protein<scp>FepB</scp>","year":2016,"lang":"en","type":"other","venue":"Encyclopedia of Inorganic and Bioinorganic Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Enterobactin; Siderophore; Periplasmic space; Bacterial outer membrane; Ferric; Bacteria; Biochemistry; Microbiology; Chemistry; Secretion; Biology; Escherichia coli; Gene","score_opus":0.0036328855003094507,"score_gpt":0.19586959226472245,"score_spread":0.19223670676441298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3194536848","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.81012344,0.002734398,0.000028284228,0.00010319226,0.0006966498,0.0005602828,0.0006169852,0.00012707675,0.18500967],"genre_scores_gemma":[0.08252248,0.01701229,0.0007895227,0.000044092663,0.0042089466,0.000038289007,0.0007327684,0.0008332465,0.8938184],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976335,0.00003887656,0.00055897876,0.0009683556,0.00022289036,0.00057740795],"domain_scores_gemma":[0.99828494,0.000021265523,0.0006012819,0.00081491744,0.000070226284,0.00020734481],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011854283,0.0006686465,0.0006519384,0.00008976231,0.00006639199,0.000032131604,0.00058366475,0.0019696734,0.0018406423],"category_scores_gemma":[0.00022903077,0.0005660742,0.00015402408,0.00014169118,0.00042619614,0.000003728917,0.0006552033,0.00030074053,0.000090808935],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014311398,0.000058494377,0.0001679196,0.00026730562,0.00015729746,0.0000061934415,0.000012426425,2.2137214e-9,0.9083315,0.0000067968203,0.08995881,0.001018948],"study_design_scores_gemma":[0.000511934,0.00009999864,0.000025759917,0.00012433743,0.000048876715,0.000037719434,0.00003488888,4.9128303e-8,0.5671903,0.000016316115,0.43169895,0.00021090383],"about_ca_topic_score_codex":0.000023937284,"about_ca_topic_score_gemma":0.000023913559,"teacher_disagreement_score":0.727601,"about_ca_system_score_codex":0.00002848628,"about_ca_system_score_gemma":0.00031075865,"threshold_uncertainty_score":0.9996791},"labels":[],"label_agreement":null},{"id":"W3196497179","doi":"10.1007/s00253-021-11524-3","title":"Extracellular lipopeptide bacillomycin L regulates serial expression of genes for modulating multicellular behavior in Bacillus velezensis Bs916","year":2021,"lang":"en","type":"article","venue":"Applied Microbiology and Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"Jiangsu Agricultural Science and Technology Independent Innovation Fund; Natural Science Foundation of Jiangsu Province; National Natural Science Foundation of China","keywords":"Biology; Extracellular; Cell biology; Gene; Gene expression; Lipopeptide; Biochemistry; Genetics; Bacteria","score_opus":0.007749474748856032,"score_gpt":0.2083213606075025,"score_spread":0.20057188585864646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3196497179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920636,0.005902084,0.0007305405,0.00024276001,0.00022476094,0.00067418884,0.00011195434,0.000033520202,0.000016620983],"genre_scores_gemma":[0.97807956,0.001015113,0.019909138,0.00004682761,0.00009990332,0.00014658143,0.00052422803,0.000034272256,0.00014438352],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99802256,0.00005872157,0.0005544113,0.000847375,0.000032546835,0.00048440925],"domain_scores_gemma":[0.99906385,0.000034615867,0.00021691916,0.00054017286,0.00009873758,0.000045689758],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00021903121,0.0003075581,0.00050894223,0.00016124912,0.000098358476,0.00001059993,0.00025114306,0.0019393461,0.000018746829],"category_scores_gemma":[0.00007463466,0.0002996688,0.00010326473,0.00018539208,0.00052337325,0.0000034670798,0.00044116084,0.00022073502,0.000002216463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002818941,0.00013653203,0.00046423028,0.00005190181,0.00003867555,0.000010707307,0.000019226896,0.000018487419,0.98139364,0.0008196462,0.000032737298,0.016732316],"study_design_scores_gemma":[0.0015714355,0.00033688766,0.00030847298,0.00002085981,0.00004434896,0.00012721182,0.00015628999,0.00002104277,0.9771033,0.0001520575,0.019831195,0.0003268914],"about_ca_topic_score_codex":0.000013069633,"about_ca_topic_score_gemma":0.00011091776,"teacher_disagreement_score":0.01979846,"about_ca_system_score_codex":0.000014177504,"about_ca_system_score_gemma":0.00006622712,"threshold_uncertainty_score":0.9999455},"labels":[],"label_agreement":null},{"id":"W3197709058","doi":"10.29173/eureka28759","title":"Bacterial signal peptides: structure, optimization, and applications","year":2021,"lang":"en","type":"article","venue":"Eureka","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Signal peptide; SIGNAL (programming language); Recombinant DNA; Computational biology; Biology; Biochemistry; Cell biology; Computer science; Gene","score_opus":0.0047378150157886935,"score_gpt":0.20794969613616904,"score_spread":0.20321188112038036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3197709058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9666898,0.0014216994,0.029475583,0.0005881189,0.0002999542,0.00027042208,0.00018041153,0.000036838686,0.0010371698],"genre_scores_gemma":[0.98529994,0.0004653435,0.011903977,0.0002687335,0.0008325678,0.000016236287,0.00067026325,0.000019049932,0.00052389497],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994412,0.000022799357,0.000109591754,0.00026562152,0.0000416281,0.0001191675],"domain_scores_gemma":[0.9996282,0.0000031377915,0.000035558223,0.0002075655,0.000080125305,0.000045427758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000026352704,0.00008893969,0.00007797066,0.000016624277,0.000064887434,0.000037184174,0.00007942285,0.00017144073,0.00018137188],"category_scores_gemma":[0.000014537547,0.000088094785,0.000023861905,0.0000703679,0.000064639775,0.0000014405327,0.000112268324,0.0000518086,0.0000029547502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000105928575,0.000015489059,0.00024202077,0.000005887431,0.000018754654,0.0000013220358,0.00000468021,0.00017241045,0.99594337,0.00024712834,0.00055447035,0.0027838515],"study_design_scores_gemma":[0.0002997807,0.000073713425,0.0005703257,0.0000025822842,0.0000139595095,0.00004925686,0.000016750953,0.000058785492,0.71115774,0.00020185034,0.28741235,0.00014292057],"about_ca_topic_score_codex":0.0000013758277,"about_ca_topic_score_gemma":0.000014798352,"teacher_disagreement_score":0.28685787,"about_ca_system_score_codex":0.0000027845288,"about_ca_system_score_gemma":0.000052417632,"threshold_uncertainty_score":0.3592401},"labels":[],"label_agreement":null},{"id":"W3199834823","doi":"10.1016/j.cub.2021.07.032","title":"Bacterial chromosome segregation: New insights into non-binary replication and division","year":2021,"lang":"en","type":"letter","venue":"Current Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Biology; Chromosome segregation; Replication (statistics); Division (mathematics); Genetics; Chromosome; Cell division; Evolutionary biology; Computational biology; Gene; Virology; Cell","score_opus":0.016847158806815442,"score_gpt":0.2674362806221538,"score_spread":0.2505891218153384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3199834823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.84886396,0.020854823,0.00063651527,0.12179373,0.0069176788,0.00068733876,0.00009400388,0.000056753503,0.0000952089],"genre_scores_gemma":[0.57732594,0.05796309,0.003401702,0.123960234,0.06771268,0.00034451543,0.16542011,0.00041306784,0.0034586543],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99765325,0.00014102533,0.00041762454,0.0013452596,0.0000862857,0.0003565449],"domain_scores_gemma":[0.9983813,0.000017067985,0.00027870134,0.0011076578,0.0001246881,0.00009056599],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0000836442,0.00042428836,0.00044343498,0.00011962583,0.00011621759,0.00005515454,0.00037390512,0.0023686998,0.000067645364],"category_scores_gemma":[0.00008398978,0.00038613935,0.0001224584,0.00012491473,0.00024333141,0.000004242153,0.0006758753,0.0006933016,0.000020384656],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021000958,0.000024978823,0.000090244146,0.00007283253,0.000049497285,0.0000070631427,0.000021351185,1.3356971e-7,0.71278924,0.000028930255,0.24296747,0.043927275],"study_design_scores_gemma":[0.0004593343,0.00049731805,0.00043892863,0.000062494844,0.00003682754,0.00002303865,0.0000026207256,0.00000941221,0.08941754,0.0006912825,0.9079448,0.00041639397],"about_ca_topic_score_codex":0.000026553987,"about_ca_topic_score_gemma":0.000016924294,"teacher_disagreement_score":0.6649774,"about_ca_system_score_codex":0.000029361932,"about_ca_system_score_gemma":0.0002585041,"threshold_uncertainty_score":0.99985904},"labels":[],"label_agreement":null},{"id":"W3199952023","doi":"10.1101/2021.09.23.461508","title":"Oligomerization of the FliF domains suggests a coordinated assembly of the bacterial flagellum MS ring","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Centre for Blood Research, University of British Columbia; University of Sheffield","keywords":"Periplasmic space; Flagellum; Ring (chemistry); Biology; Cell biology; Transmembrane domain; Basal body; Cell envelope; Protein structure; Crystallography; Chemistry; Biochemistry; Gene; Escherichia coli","score_opus":0.006282307541151482,"score_gpt":0.19864088144529715,"score_spread":0.19235857390414568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3199952023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99609846,0.00036799617,0.00027939296,0.00018333508,0.0022820486,0.00053051015,0.00022179767,0.000026721613,0.000009757464],"genre_scores_gemma":[0.99858445,0.00029714772,0.0005884197,0.000051139024,0.0003612185,0.000036601727,0.0000032560852,0.00007021446,0.000007567016],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979488,0.00023881771,0.0005831367,0.000654456,0.00023364539,0.00034110495],"domain_scores_gemma":[0.9969294,0.000012689877,0.0007627073,0.0017330189,0.000495262,0.000066931156],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002977308,0.00037674015,0.00046515124,0.00007076463,0.00011350593,0.00006628612,0.001009411,0.0010398268,0.000015759151],"category_scores_gemma":[0.0002775913,0.00028784978,0.00028666863,0.0004603466,0.00031496867,0.0000048095503,0.0017615882,0.00038547534,9.230048e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036954247,0.00008898073,0.002280669,0.00016504753,0.00016022031,0.0000016136803,0.000005049708,0.00004229422,0.9971109,0.00008317213,0.000022012622,0.0000030800056],"study_design_scores_gemma":[0.00039427343,0.000059172475,0.076570496,0.00021355605,0.0000972139,5.1641532e-8,0.0000030022156,0.00003685809,0.92046267,6.650037e-7,0.0018782107,0.00028381936],"about_ca_topic_score_codex":0.00006659135,"about_ca_topic_score_gemma":0.000027202566,"teacher_disagreement_score":0.07664823,"about_ca_system_score_codex":0.000042510117,"about_ca_system_score_gemma":0.00066185265,"threshold_uncertainty_score":0.9999574},"labels":[],"label_agreement":null},{"id":"W3202917468","doi":"10.7554/elife.70597","title":"PGFinder, a novel analysis pipeline for the consistent, reproducible, and high-resolution structural analysis of bacterial peptidoglycans","year":2021,"lang":"en","type":"article","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Australian Research Council; Biotechnology and Biological Sciences Research Council; Medical Research Council; Medical Research Council Canada; National Institutes of Health; Agence Nationale de la Recherche","keywords":"Peptidoglycan; Glycomics; Computational biology; Pipeline (software); Workflow; Glycan; Computer science; Proteomics; Software; Bacterial cell structure; Biology; Biochemistry; Bacteria; Genetics; Database; Programming language; Gene","score_opus":0.015890367048181114,"score_gpt":0.25581028332386624,"score_spread":0.23991991627568512,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3202917468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9752474,0.001053733,0.022098545,0.00069842034,0.0002305544,0.00014363765,0.0005082659,0.0000069989046,0.000012453611],"genre_scores_gemma":[0.99398637,0.00043632623,0.0037227934,0.0001420221,0.00027421562,0.000013328652,0.0011510534,0.00000958029,0.00026432594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988842,0.000032892534,0.00030328942,0.00049380574,0.00010032145,0.00018548426],"domain_scores_gemma":[0.9988567,0.000027637609,0.00016005705,0.00062691857,0.0002882665,0.000040398885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022523566,0.00012907716,0.00032495958,0.00011928706,0.000092212475,0.000027921202,0.00013008082,0.00019177969,0.000041317162],"category_scores_gemma":[0.00021740556,0.00009858932,0.00025617366,0.0006568744,0.00014871117,0.0000018923962,0.0001483192,0.0000541269,1.9277384e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016078932,0.000031561973,0.0015953485,0.000008823902,0.0034590675,4.3370994e-7,0.000025384303,0.00079206045,0.99224555,0.00021617154,0.00027622763,0.0011885865],"study_design_scores_gemma":[0.0014092915,0.00021968863,0.0730462,0.0000043026103,0.009432689,0.000011393765,0.00017430623,0.017655596,0.87711376,0.000028132827,0.020598875,0.0003057496],"about_ca_topic_score_codex":0.000108997745,"about_ca_topic_score_gemma":0.001419909,"teacher_disagreement_score":0.11513177,"about_ca_system_score_codex":0.0000066027233,"about_ca_system_score_gemma":0.00007091387,"threshold_uncertainty_score":0.40203556},"labels":[],"label_agreement":null},{"id":"W3203875270","doi":"10.7554/elife.67495","title":"Two different cell-cycle processes determine the timing of cell division in Escherichia coli","year":2021,"lang":"en","type":"article","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"Université Paris Descartes; H2020 European Research Council; Agence Nationale de la Recherche; Associazione Italiana per la Ricerca sul Cancro; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Volkswagen Foundation; National Science Foundation","keywords":"Cell division; Cell cycle; Replication (statistics); Biology; Division (mathematics); Genetics; DNA replication; Cell; Cell biology; DNA; Mathematics; Virology","score_opus":0.010011196615371344,"score_gpt":0.2364079874136312,"score_spread":0.22639679079825986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3203875270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978856,0.001192828,0.00012170643,0.00014756792,0.00010964026,0.00008785233,0.000008515568,0.000004887011,0.0004414301],"genre_scores_gemma":[0.99831927,0.0006635484,0.0005341722,0.0001455632,0.000076417884,0.0000093127355,0.000030743446,0.000012179835,0.00020880142],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993156,0.000038552193,0.00018579749,0.00021515743,0.000084679945,0.00016021426],"domain_scores_gemma":[0.9995378,0.0000138204,0.00007603262,0.00026848057,0.000076422155,0.000027413427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006507232,0.00010361146,0.00012943809,0.000017874414,0.000033933753,0.000012884671,0.000168256,0.000118820884,0.0000212847],"category_scores_gemma":[0.000052003215,0.000074380885,0.000038538437,0.000117032745,0.00005160442,0.0000011168789,0.00022949927,0.00008151262,0.0000023941052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015770765,0.00011659836,0.0014917826,0.00004365608,0.000004717863,0.000002876526,0.000032748467,0.000022000722,0.9974163,0.0000030406316,0.00007019666,0.0007802798],"study_design_scores_gemma":[0.00041612572,0.0001182855,0.005131099,0.000014710674,0.0000076102706,0.0000014173272,0.00006454697,0.00009808964,0.9911886,0.000014544403,0.0028518983,0.00009308642],"about_ca_topic_score_codex":0.0000138417245,"about_ca_topic_score_gemma":0.00014080766,"teacher_disagreement_score":0.0062277457,"about_ca_system_score_codex":0.0000046621476,"about_ca_system_score_gemma":0.00007323621,"threshold_uncertainty_score":0.30331644},"labels":[],"label_agreement":null},{"id":"W3205479967","doi":"10.1101/2021.10.13.464265","title":"Truncation of poly- <i>N</i> -acetylglucosamine (PNAG) polymerization with <i>N</i> -acetylglucosamine analogues","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Biofilm; Glycosyltransferase; Virulence; N-Acetylglucosamine; Bacteria; In vivo; Polysaccharide; Chemistry; Microbiology; Acetylglucosamine; In vitro; Enzyme; Biochemistry; Biology; Gene","score_opus":0.006558250773839552,"score_gpt":0.1935322217589288,"score_spread":0.18697397098508925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3205479967","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98472714,0.006424137,0.006792908,0.00036211679,0.000656222,0.0005290796,0.00039957368,0.00009851206,0.000010333119],"genre_scores_gemma":[0.98736644,0.0022169775,0.009343608,0.0002171924,0.0005262249,0.000101079866,0.00006976717,0.00014829804,0.00001039912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971292,0.00013632914,0.0006815526,0.0012140489,0.0003271511,0.00051174586],"domain_scores_gemma":[0.9967125,0.000012513638,0.0007421758,0.0016749561,0.0006840869,0.00017378226],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025763575,0.0006490762,0.000716767,0.00020431886,0.00009554628,0.000114631366,0.000583148,0.001175826,0.000020432617],"category_scores_gemma":[0.00010951878,0.000651735,0.00018491074,0.0005612468,0.00030369635,0.0000128245865,0.0006539947,0.00040146182,0.0000030080728],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014333529,0.00023109757,0.0019468785,0.00023444109,0.00027585955,0.0000098578275,0.000004518002,0.000029427873,0.9969245,0.00009547185,0.00007314546,0.000031440097],"study_design_scores_gemma":[0.00080234586,0.0004678805,0.0139783835,0.00017008683,0.00016471077,1.7763995e-7,0.00000829355,0.00005568088,0.97775507,3.7733253e-7,0.0058789696,0.0007179988],"about_ca_topic_score_codex":0.00007021671,"about_ca_topic_score_gemma":0.000028678722,"teacher_disagreement_score":0.019169431,"about_ca_system_score_codex":0.00005096728,"about_ca_system_score_gemma":0.000669958,"threshold_uncertainty_score":0.9995934},"labels":[],"label_agreement":null},{"id":"W3206434489","doi":"10.1021/acschembio.1c00576","title":"Concerted Differential Changes of Helical Dynamics and Packing upon Ligand Occupancy in a Bacterial Chemoreceptor","year":2021,"lang":"en","type":"article","venue":"ACS Chemical Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Science Foundation; Richard and Susan Smith Family Foundation; Arnold and Mabel Beckman Foundation; Alfred P. Sloan Foundation","keywords":"Periplasmic space; Coiled coil; Biophysics; Transmembrane domain; Ligand (biochemistry); Helix (gastropod); Transmembrane protein; PAS domain; Protein structure; Histidine kinase; Conformational change; Förster resonance energy transfer; Cytoplasm; Chemistry; Crystallography; Receptor; Biology; Histidine; Biochemistry; Amino acid; Escherichia coli; Physics","score_opus":0.008565020511218574,"score_gpt":0.23961600653969028,"score_spread":0.2310509860284717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3206434489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983945,0.00044372285,0.0000559986,0.0005969062,0.00025913757,0.00009310548,0.000101095415,0.000009604252,0.00004593743],"genre_scores_gemma":[0.9975504,0.0007725264,0.000314323,0.000102119564,0.0002855662,0.000011933931,0.0009294812,0.0000149226835,0.000018727034],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888146,0.00005156151,0.00026583715,0.00045796766,0.00004309716,0.00030008488],"domain_scores_gemma":[0.9995212,0.000024002164,0.00009056519,0.00023485794,0.00006638961,0.00006296622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005635732,0.0001790745,0.00035242204,0.000039300226,0.000017749408,0.000010511773,0.00015029302,0.0007305763,0.000046091187],"category_scores_gemma":[0.00015097889,0.00016577666,0.000048083308,0.00009754262,0.0002505906,0.0000015099341,0.00037292336,0.00014829065,0.0000010418036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022382481,0.00007631148,0.0032001713,0.000022478993,0.00003560102,0.000003067411,0.000013444269,3.0273434e-8,0.9853499,0.000295192,0.000023895243,0.010756069],"study_design_scores_gemma":[0.0010790695,0.00022702811,0.0012767749,0.000016836497,0.000014752163,0.000029120714,0.00002398017,0.00003430436,0.9950698,0.00012483825,0.0019191356,0.00018437885],"about_ca_topic_score_codex":0.00001536187,"about_ca_topic_score_gemma":0.00017469216,"teacher_disagreement_score":0.010571689,"about_ca_system_score_codex":0.000014798382,"about_ca_system_score_gemma":0.000052172694,"threshold_uncertainty_score":0.6760176},"labels":[],"label_agreement":null},{"id":"W3206989198","doi":"10.1002/prot.26266","title":"Conformational variability of loops in the <scp>SARS‐CoV</scp> ‐2 spike protein","year":2021,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Spike Protein; Spike (software development); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Biophysics; Biology; Virology; Computer science; Medicine","score_opus":0.0070731019760121965,"score_gpt":0.2083937103657186,"score_spread":0.20132060838970642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3206989198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99221706,0.00011051593,0.005665056,0.00021950023,0.0001349827,0.00056242064,0.00009351098,0.000009758095,0.000987189],"genre_scores_gemma":[0.990927,0.00004180411,0.008191516,0.00041095758,0.000082580205,0.00002440206,0.00026838426,0.0000065227223,0.000046841047],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999,0.000070080234,0.00042157783,0.0001570835,0.0001656323,0.00018560493],"domain_scores_gemma":[0.99929374,0.000015633304,0.00018544488,0.00032037697,0.00015838309,0.000026409263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028948975,0.00015421685,0.00016297463,0.000053379714,0.000072063114,0.000046405385,0.00014572896,0.00031953523,0.0000119081915],"category_scores_gemma":[0.00026214207,0.00010802386,0.000050873507,0.00020751807,0.00013905297,0.000012932788,0.00011538386,0.00018199654,0.0000016231354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024274144,0.000051499494,0.0013544235,0.0002042023,0.000031360054,6.4865384e-7,0.00019226923,0.000007080067,0.98924965,0.0034430586,0.00023274228,0.0052088145],"study_design_scores_gemma":[0.00093784835,0.00046269732,0.014453346,0.000029427076,0.000025180736,0.00008797809,0.0007068453,0.00059000833,0.9373474,0.003837805,0.041413996,0.000107459346],"about_ca_topic_score_codex":0.000006958424,"about_ca_topic_score_gemma":0.000052257885,"teacher_disagreement_score":0.05190222,"about_ca_system_score_codex":0.000007635099,"about_ca_system_score_gemma":0.00011658821,"threshold_uncertainty_score":0.4405085},"labels":[],"label_agreement":null},{"id":"W3207154981","doi":"10.1101/2021.10.13.464295","title":"Conjugation-based genome engineering in <i>Deinococcus radiodurans</i>","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Oxford Nanopore Technologies","keywords":"Deinococcus radiodurans; Plasmid; Genome; Genome engineering; Biology; Computational biology; Transformation (genetics); Genetics; Synthetic biology; Gene; Bioproduction; Genome editing","score_opus":0.0056642532733951825,"score_gpt":0.18452479975799352,"score_spread":0.17886054648459834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3207154981","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99418837,0.0023889951,0.0017590363,0.00019610954,0.00075433945,0.00048232632,0.00013146143,0.00009583845,0.000003498294],"genre_scores_gemma":[0.99447274,0.0005051095,0.004003979,0.00025444134,0.00047716463,0.00016011954,0.000010430263,0.00011357457,0.0000024646017],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99763566,0.00007689097,0.0005042714,0.0010737511,0.00016924366,0.0005401737],"domain_scores_gemma":[0.9981608,0.000013488367,0.00020104236,0.0012260784,0.00024563313,0.00015298734],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002853157,0.0005105554,0.00048705147,0.0002157743,0.00005233976,0.00014805415,0.0005356967,0.001239605,0.000024109282],"category_scores_gemma":[0.00013685432,0.0006105546,0.00017240067,0.0003227568,0.00008898161,0.000004508683,0.00038957087,0.0005759517,0.000008001386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002735928,0.00008736064,0.0022970596,0.0001682143,0.000074298,0.000044221422,0.0000017019539,0.0017253365,0.99552506,0.000023535855,0.000024023066,0.000001822398],"study_design_scores_gemma":[0.00082668435,0.000089130015,0.041861933,0.00012256781,0.000036830046,3.1464673e-8,0.0000010468297,0.0005311126,0.9459748,1.5995921e-7,0.009850703,0.00070497365],"about_ca_topic_score_codex":0.000031926018,"about_ca_topic_score_gemma":0.000010910971,"teacher_disagreement_score":0.04955024,"about_ca_system_score_codex":0.00010293058,"about_ca_system_score_gemma":0.00062170153,"threshold_uncertainty_score":0.99963456},"labels":[],"label_agreement":null},{"id":"W3208201772","doi":"10.7554/elife.67495.sa2","title":"Author response: Two different cell-cycle processes determine the timing of cell division in Escherichia coli","year":2021,"lang":"en","type":"peer-review","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Cell division; Biology; DNA replication; Genetics; Division (mathematics); Cell cycle; Replication (statistics); Cell; Cell biology; DNA; Mathematics; Arithmetic; Virology","score_opus":0.023786970370547614,"score_gpt":0.29830190035646437,"score_spread":0.27451492998591676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3208201772","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94262755,0.044336196,0.00012907713,0.010404925,0.0008103847,0.00072923605,0.00017323872,0.000014488942,0.00077491574],"genre_scores_gemma":[0.86637765,0.015442728,0.0009788855,0.00094377185,0.00026729112,0.00011354137,0.00092148077,0.00008270421,0.11487193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979428,0.00025787094,0.00060422637,0.00063068303,0.00021865605,0.00034573994],"domain_scores_gemma":[0.99845976,0.000073466035,0.0003539822,0.00081536185,0.00023791188,0.00005951887],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00041128515,0.00039475545,0.00062091125,0.00007114013,0.000055511344,0.000030126528,0.0006159803,0.0006444952,0.00019602534],"category_scores_gemma":[0.00028383028,0.00026240168,0.00016634121,0.00026772043,0.00012192956,0.0000013183798,0.00073309714,0.00035617716,0.0000036367187],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010392289,0.00018065661,0.000020918429,0.0019586647,0.000020871023,0.000006218324,0.0000139774875,0.0000037502584,0.9532903,7.432068e-7,0.0425967,0.0018032916],"study_design_scores_gemma":[0.0003227966,0.0002825755,0.00021144704,0.0005490202,0.00005775543,0.0000027666786,0.000018703713,0.00002220483,0.6795798,0.0000064597402,0.3186975,0.0002489786],"about_ca_topic_score_codex":0.00006141572,"about_ca_topic_score_gemma":0.00046610486,"teacher_disagreement_score":0.2761008,"about_ca_system_score_codex":0.000019373978,"about_ca_system_score_gemma":0.00037704274,"threshold_uncertainty_score":0.99998283},"labels":[],"label_agreement":null},{"id":"W3208404570","doi":"10.14288/ujemi.v25i.193275","title":"Biofilm production in Escherichia coli K30 with group 1 capsular gene wza and wza-wzb-wzc deletions is not correlated with Erythromycin resistance phenotypes in liquid media","year":2020,"lang":"en","type":"article","venue":"Open Collections","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biofilm; Biology; Erythromycin; Microbiology; Escherichia coli; Agar; Biochemistry; Gene; Bacteria; Antibiotics; Genetics","score_opus":0.009912138919292142,"score_gpt":0.20449852928794843,"score_spread":0.1945863903686563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3208404570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934545,0.00033757798,0.00028741293,0.0037190646,0.000126477,0.0008719058,0.00008148904,0.000021894732,0.0010996775],"genre_scores_gemma":[0.98955584,0.0006976678,0.006715945,0.00046794958,0.000119322656,0.00019118942,0.00013561087,0.00003783269,0.002078674],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868417,0.00007340413,0.00025644063,0.0006328699,0.000094268406,0.0002588609],"domain_scores_gemma":[0.99943274,0.000008796472,0.00009799579,0.0002748175,0.00009525446,0.00009039793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011061032,0.00020090966,0.00024922466,0.000071096016,0.0003432976,0.00014084644,0.00020349497,0.00027035904,0.00004781433],"category_scores_gemma":[0.00006222418,0.00018066974,0.00002087203,0.0012158313,0.00017773092,0.0000138027635,0.00015131402,0.00023157871,0.000001909367],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022202933,0.00015974585,0.0003178487,0.000016722564,0.00006712317,0.000011558985,0.0002573646,0.000100439254,0.9898766,0.000031500607,0.006845169,0.00009561723],"study_design_scores_gemma":[0.0032803486,0.0025886057,0.0041727093,0.000092476825,0.000080071004,0.000045798108,0.00049795955,0.00018050605,0.92654026,0.00006135886,0.06180881,0.0006510789],"about_ca_topic_score_codex":0.0011686,"about_ca_topic_score_gemma":0.027539851,"teacher_disagreement_score":0.063336335,"about_ca_system_score_codex":0.000037078218,"about_ca_system_score_gemma":0.0001805232,"threshold_uncertainty_score":0.990205},"labels":[],"label_agreement":null},{"id":"W3209908396","doi":"10.1073/pnas.2106022118","title":"Demonstration of the role of cell wall homeostasis in <i>Staphylococcus aureus</i> growth and the action of bactericidal antibiotics","year":2021,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Directorate for Biological Sciences; Engineering and Physical Sciences Research Council; China Scholarship Council; Research Councils UK; National Natural Science Foundation of China; Wellcome Trust; UK Research and Innovation; National Science Foundation","keywords":"Peptidoglycan; Antibiotics; Staphylococcus aureus; Microbiology; Bacterial cell structure; Cell wall; Cell division; Biology; Bacteria; Vancomycin; Cell biology; Cell; Biochemistry; Genetics","score_opus":0.011431863601290788,"score_gpt":0.23858255614182805,"score_spread":0.22715069254053727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3209908396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99774873,0.00039205345,6.991809e-7,0.001213889,0.000015151305,0.00010229296,0.000021112244,6.4914855e-7,0.00050543336],"genre_scores_gemma":[0.9989228,0.0006312537,0.00037171386,0.000045079352,0.000018221152,5.9878664e-7,4.768715e-7,0.0000019934678,0.000007844898],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999241,0.000014967671,0.00027987701,0.00013363306,0.0002588322,0.00007168714],"domain_scores_gemma":[0.99927425,0.000024797786,0.00045552824,0.0000173028,0.0002198608,0.000008232845],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041595942,0.0000587673,0.0001272042,0.00004412682,0.000036760648,0.0000053427448,0.00034623756,0.00013528026,9.122289e-7],"category_scores_gemma":[0.00012738927,0.000032825705,0.000058597503,0.00037112902,0.0010274689,0.000009720821,0.00014322114,0.00007850026,1.24306725e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003466088,0.000040407132,0.012940057,0.00005308558,0.000009262124,9.555755e-10,0.00005100954,0.000008436515,0.9833659,0.0032216918,0.0000083684145,0.00026713952],"study_design_scores_gemma":[0.00022313283,0.00005205384,0.049276534,0.000025242949,0.000012112781,0.0000014592977,0.00022422518,0.0000665477,0.94667053,0.003367293,0.00004894915,0.000031890126],"about_ca_topic_score_codex":0.000013244383,"about_ca_topic_score_gemma":0.0000015968594,"teacher_disagreement_score":0.036695324,"about_ca_system_score_codex":0.0000033862345,"about_ca_system_score_gemma":0.00004575634,"threshold_uncertainty_score":0.3785752},"labels":[],"label_agreement":null},{"id":"W3212821685","doi":"10.1007/978-1-0716-1900-1_8","title":"Design and Production of Hybrid Antigens for Targeting Integral Outer Membrane Proteins in Gram-Negative Bacteria","year":2021,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Calgary","funders":"","keywords":"Bacteria; Bacterial outer membrane; Gram-negative bacteria; Antigen; Microbiology; Chemistry; Biology; Biochemistry; Escherichia coli; Gene; Genetics","score_opus":0.020048366377261713,"score_gpt":0.3298859259495902,"score_spread":0.3098375595723285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3212821685","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5366891,0.0003935021,0.46195796,0.00025828322,0.00022882975,0.0004516006,0.00000949169,0.0000044963285,0.0000067051897],"genre_scores_gemma":[0.22219796,0.0002735522,0.777173,0.00006829425,0.00004968594,0.00009596335,0.0000907845,0.000019841716,0.000030917516],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99778336,0.00087554316,0.00040225204,0.0005992042,0.000032876735,0.00030676354],"domain_scores_gemma":[0.99938303,0.000048148675,0.00013344285,0.00027321698,0.00013089707,0.000031278916],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010660288,0.00018737049,0.00035960056,0.00012246534,0.000025273048,0.000009317222,0.00013411453,0.000290266,0.0000054706557],"category_scores_gemma":[0.0011065033,0.00017804837,0.00006750543,0.00016983622,0.00020549816,0.0000027224748,0.00017035606,0.00014760652,1.6357487e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018021271,0.000069021895,0.00033916914,0.00004316194,0.000037956248,0.000010831427,0.000042889846,0.00004102902,0.98937154,0.00018169444,0.00000732978,0.009675182],"study_design_scores_gemma":[0.000609119,0.00044743548,0.0002375927,0.000022704295,0.00001179748,0.000039787923,0.000051137737,0.0001658229,0.9935486,0.0034746097,0.0012030995,0.00018831457],"about_ca_topic_score_codex":0.000021021726,"about_ca_topic_score_gemma":0.000021699308,"teacher_disagreement_score":0.31521502,"about_ca_system_score_codex":0.00001322505,"about_ca_system_score_gemma":0.00008138006,"threshold_uncertainty_score":0.72606015},"labels":[],"label_agreement":null},{"id":"W3214176643","doi":"10.1093/femsre/fuab053","title":"Type IV Pili: dynamic bacterial nanomachines","year":2021,"lang":"en","type":"review","venue":"FEMS Microbiology Reviews","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research; Damon Runyon Cancer Research Foundation","keywords":"Pilus; Biology; Biofilm; Motility; Function (biology); Type VI secretion system; Bacteria; Virulence; Cell biology; Genetics; Gene","score_opus":0.025442579054649448,"score_gpt":0.30774704814420917,"score_spread":0.2823044690895597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3214176643","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006348429,0.99383485,0.000011143239,0.000037626414,0.0038231362,0.0011625361,0.00033458165,0.00003222888,0.00012903276],"genre_scores_gemma":[0.0000075858725,0.9811058,0.00069354614,0.00016117428,0.0009408796,0.00012132178,0.013835309,0.00011658837,0.0030177906],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99595326,0.0007853391,0.0012585716,0.001328064,0.000030448926,0.00064433843],"domain_scores_gemma":[0.99761647,0.000021901786,0.00074196584,0.0013968385,0.00011595203,0.00010687449],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004221793,0.000932617,0.0031844461,0.00012891367,0.00011325091,0.000051233787,0.0009119694,0.0024336672,0.00035462357],"category_scores_gemma":[0.00022161895,0.0007078222,0.0010357128,0.0003470537,0.00027006766,0.000002263035,0.00077060104,0.0005200429,0.00073949085],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000132780515,0.000065253036,0.0000011989217,0.0018812037,0.00026559294,0.00000859417,0.0000028076606,2.1251115e-8,0.2528926,0.000011107275,0.011375863,0.7334825],"study_design_scores_gemma":[0.00019010247,0.00031413874,5.528048e-7,0.0020067357,0.00043448285,0.00070655026,0.000001186116,1.15193956e-7,0.00053628336,0.000002663642,0.9950686,0.00073860417],"about_ca_topic_score_codex":0.0000050079825,"about_ca_topic_score_gemma":0.000055911703,"teacher_disagreement_score":0.9836927,"about_ca_system_score_codex":0.000046957062,"about_ca_system_score_gemma":0.00042766903,"threshold_uncertainty_score":0.9995373},"labels":[],"label_agreement":null},{"id":"W3216935308","doi":"10.1101/2021.12.01.470718","title":"Metabolite Damage and Damage-Control in a Minimal Genome","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Science Foundation","keywords":"Metabolite; Methylglyoxal; Metabolomics; Biochemistry; Enzyme; Computational biology; Chemistry; Biology; Bioinformatics","score_opus":0.006292207514268618,"score_gpt":0.1977302458165948,"score_spread":0.19143803830232617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3216935308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914386,0.006474138,0.0004097774,0.00028589967,0.00048461652,0.0004939924,0.00035807918,0.00004946829,0.0000054214097],"genre_scores_gemma":[0.9937907,0.002034515,0.0029619767,0.000497454,0.0004871326,0.00011785935,0.0000052734404,0.00009788672,0.0000072202542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973389,0.00014622111,0.00049844873,0.0012762285,0.00015406615,0.00058614404],"domain_scores_gemma":[0.99810493,0.000011669326,0.00023966812,0.001230604,0.00021871574,0.00019443],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00041969086,0.00053386035,0.0006368172,0.00021299567,0.00006820598,0.00020897237,0.000497785,0.0012646794,0.000019810417],"category_scores_gemma":[0.00012790976,0.0005889177,0.00013871705,0.0002425482,0.00020135986,0.000007254932,0.0010581558,0.0005942433,0.000005193933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000064283246,0.00009706936,0.0043717897,0.0001179983,0.00014392423,0.00007454139,0.000004122481,0.0000115979865,0.9950298,0.000058761307,0.00002126078,0.0000048355296],"study_design_scores_gemma":[0.0012555056,0.00012994143,0.314343,0.00006839201,0.000112252914,8.353828e-8,0.0000056684535,0.000113751026,0.66366094,0.0000012315309,0.019500641,0.0008085712],"about_ca_topic_score_codex":0.00004289669,"about_ca_topic_score_gemma":0.000022164975,"teacher_disagreement_score":0.33136883,"about_ca_system_score_codex":0.00003958512,"about_ca_system_score_gemma":0.0003889034,"threshold_uncertainty_score":0.9996562},"labels":[],"label_agreement":null},{"id":"W386020657","doi":"","title":"Searching for crp: Investigating Candidate Genes for the cAMP Receptor Protein in Bdellovibrio bacteriovorus","year":2011,"lang":"en","type":"article","venue":"Sound Ideas (University of Puget Sound)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Gene; Bdellovibrio; Genetics; Biology; Candidate gene; Computational biology; Bacteria","score_opus":0.02621365442531011,"score_gpt":0.2254178187303779,"score_spread":0.19920416430506777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W386020657","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9890924,0.0002647079,0.009222775,0.00024038144,0.00014010079,0.0008245909,0.00010403576,0.000013550805,0.00009746377],"genre_scores_gemma":[0.9833085,0.000089972644,0.015792664,0.000047084253,0.00010953474,0.00001043503,0.000101722326,0.000021533951,0.00051856437],"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.99904567,0.000050605588,0.00015999775,0.00033816433,0.00007535606,0.00033021162],"domain_scores_gemma":[0.9993231,0.000030420144,0.00015286931,0.000318133,0.00011005634,0.000065410226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034345625,0.00014844492,0.00018819247,0.00007427933,0.0002685558,0.000024119952,0.0004248584,0.0002358843,0.000028439988],"category_scores_gemma":[0.0000956448,0.000144159,0.00013048545,0.00010742017,0.0003248323,0.000010838971,0.0002068192,0.000104523795,0.0000032424302],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005838387,0.00008211797,0.0037115256,0.00014660433,0.00018928318,0.0000016370442,0.0016535157,0.000024385343,0.9555773,0.035621285,0.00025263126,0.0021558646],"study_design_scores_gemma":[0.0036175593,0.0016359386,0.004660987,0.00009512204,0.00012163763,0.000011687042,0.0059574344,0.0006780497,0.08079749,0.8551043,0.04645851,0.00086125114],"about_ca_topic_score_codex":0.0009040442,"about_ca_topic_score_gemma":0.0032887738,"teacher_disagreement_score":0.8747798,"about_ca_system_score_codex":0.000025694242,"about_ca_system_score_gemma":0.00011731622,"threshold_uncertainty_score":0.5878634},"labels":[],"label_agreement":null},{"id":"W4200045857","doi":"10.3791/54854-v","title":"Conjugative Mating Assays for Sequence-specific Analysis of Transfer Proteins Involved in Bacterial Conjugation","year":2017,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Bacterial conjugation; Plasmid; Biology; Gene; Genetics; DNA; Mating; Horizontal gene transfer; Escherichia coli; Exogenous DNA; Point mutation; Cell biology; Computational biology; Mutation; Genome","score_opus":0.059243208662671486,"score_gpt":0.4035464537033009,"score_spread":0.3443032450406294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200045857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99551725,0.00015274817,0.0035533423,0.00006642762,0.00026461095,0.00032956022,0.000066908215,0.0000018432827,0.000047287733],"genre_scores_gemma":[0.99472696,0.0001683032,0.004817014,0.00001952391,0.00014524067,0.000021994081,0.000076754826,0.000013491154,0.000010703857],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987658,0.000078988385,0.00066259917,0.00018305008,0.00014176194,0.00016777443],"domain_scores_gemma":[0.99878687,0.000013741397,0.0006297133,0.00026233587,0.0002601209,0.000047205987],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042096243,0.00013653062,0.0004531475,0.00019916739,0.0000802622,0.000050278235,0.00031430187,0.0002274347,0.000030156405],"category_scores_gemma":[0.00012305503,0.00012119516,0.00022257182,0.00009033986,0.00013720569,0.000014689811,0.000050415136,0.0000772514,2.1604903e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010164564,0.00011882951,0.0012569608,0.00001170455,0.00048662993,0.0000017610907,0.00026287584,0.000010602964,0.9959843,0.00018933704,0.000020481302,0.0006400608],"study_design_scores_gemma":[0.0031142188,0.0008182856,0.0029915352,0.00004550975,0.00010536804,0.0000016894066,0.00020569337,0.00011924241,0.9910359,0.00008263634,0.00135214,0.00012778252],"about_ca_topic_score_codex":0.000020983265,"about_ca_topic_score_gemma":0.000028270695,"teacher_disagreement_score":0.0049484014,"about_ca_system_score_codex":0.000030455714,"about_ca_system_score_gemma":0.0000727406,"threshold_uncertainty_score":0.4942195},"labels":[],"label_agreement":null},{"id":"W4200360803","doi":"10.3791/1225-v","title":"Identification of protein complexes with quantitative proteomics in S. cerevisiae","year":2009,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Proteomics; Identification (biology); Quantitative proteomics; Computational biology; Biology; Biochemistry","score_opus":0.020426133341995643,"score_gpt":0.3847028062611519,"score_spread":0.3642766729191562,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200360803","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968295,0.00066269404,0.0020464975,0.000112311005,0.000036580856,0.0002755532,0.000003869627,0.0000018081181,0.000031172003],"genre_scores_gemma":[0.98939663,0.000098022334,0.010393689,0.00002966402,0.000034916204,0.0000053032204,0.000006109299,0.000007997461,0.000027656633],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990454,0.00006243901,0.0005232102,0.00012375295,0.00013107307,0.00011416233],"domain_scores_gemma":[0.99909854,0.0000025347879,0.00057228183,0.00013744843,0.00015750193,0.00003171637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021054054,0.00010043109,0.00022957222,0.0001047528,0.000016375852,0.0000136870385,0.00016817078,0.000107455984,0.000005171205],"category_scores_gemma":[0.00003855928,0.0000784024,0.000052061456,0.000110708555,0.00006362514,0.0000064533947,0.000022291399,0.000073707444,5.886666e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090847036,0.00026366414,0.00021673595,0.000008803456,0.000034132492,0.0000027562057,0.00010316485,0.000008700969,0.99750257,0.00043833425,0.000019338833,0.00049331924],"study_design_scores_gemma":[0.0014267592,0.002584644,0.0026984632,0.000066018445,0.000007582677,0.000015275853,0.00014984059,0.000014977082,0.99235255,0.00016946971,0.00042631695,0.00008812623],"about_ca_topic_score_codex":0.000003535178,"about_ca_topic_score_gemma":0.0000019102215,"teacher_disagreement_score":0.008347192,"about_ca_system_score_codex":0.000014898555,"about_ca_system_score_gemma":0.00005746585,"threshold_uncertainty_score":0.3197157},"labels":[],"label_agreement":null},{"id":"W4200567939","doi":"10.1016/j.jbc.2021.101486","title":"Investigation of core machinery for biosynthesis of Vi antigen capsular polysaccharides in Gram-negative bacteria","year":2021,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Microbiology; Antigen; Biology; Bordetella bronchiseptica; Bacterial capsule; Bacteria; Bordetella pertussis; Virulence; Biochemistry; Gene; Genetics","score_opus":0.028923766955238402,"score_gpt":0.25299231349465745,"score_spread":0.22406854653941904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200567939","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986802,0.0007513607,0.0001193473,0.00018695794,0.00007618556,0.000065726534,0.00009775557,0.0000019221632,0.000020584768],"genre_scores_gemma":[0.9941304,0.0008350247,0.00477442,0.000039915394,0.00013959105,0.000002580544,0.000056475226,0.000007897263,0.0000137073575],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894303,0.00004091559,0.00059715804,0.00019066899,0.00007654208,0.0001516933],"domain_scores_gemma":[0.9988816,0.00005050304,0.0005475526,0.00016781126,0.0002959941,0.000056535115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002665982,0.00013210297,0.00037948342,0.000034942932,0.000016018834,0.0000059117297,0.00020774387,0.00045196115,0.000036276728],"category_scores_gemma":[0.00068479654,0.00010134132,0.0001852503,0.00012665012,0.00021880072,0.0000031647553,0.00008947316,0.00012084669,1.1107821e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002220907,0.0000600965,0.01311355,0.00006377007,0.000069717156,0.000005863478,0.00001460628,0.0000040930713,0.98570454,0.000009586729,0.000032677137,0.0006994215],"study_design_scores_gemma":[0.00048192457,0.00033014172,0.014646479,0.000058422997,0.000017661447,0.000046693698,0.000085976186,0.000009738453,0.98317313,0.00075892656,0.00028364023,0.00010726637],"about_ca_topic_score_codex":0.0000073901247,"about_ca_topic_score_gemma":0.00000385003,"teacher_disagreement_score":0.004655073,"about_ca_system_score_codex":0.000011916393,"about_ca_system_score_gemma":0.00012896344,"threshold_uncertainty_score":0.4132579},"labels":[],"label_agreement":null},{"id":"W4205118511","doi":"10.1101/2022.01.20.477143","title":"<i>Caulobacter</i> requires anionic sphingolipids and deactivation of <i>fur</i> to lose lipid A","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Lawrence Berkeley National Laboratory; European Regional Development Fund; Fundacja na rzecz Nauki Polskiej; European Commission; Laboratory Directed Research and Development; U.S. Department of Energy; Consortium canadien en neurodégénérescence associée au vieillissement; National Institutes of Health; National Science Foundation","keywords":"Caulobacter crescentus; Lipid A; Sphingolipid; Ceramide; Lipid II; Biochemistry; Bacterial outer membrane; Cell biology; Response regulator; Biology; Lipidome; Chemistry; Lipopolysaccharide; Lipid metabolism; Enzyme; Escherichia coli; Gene; Biosynthesis; Mutant","score_opus":0.008332572083387904,"score_gpt":0.21552053489788142,"score_spread":0.20718796281449353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205118511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965261,0.00077694654,0.00026354415,0.0004230731,0.0009917818,0.00059153367,0.00034675197,0.00006756289,0.000012682612],"genre_scores_gemma":[0.9951258,0.0010646083,0.00246391,0.00042275322,0.0006772252,0.00013565585,0.0000045637626,0.00009663969,0.000008895604],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99763566,0.00011446224,0.0005412226,0.00104156,0.0002386607,0.00042843496],"domain_scores_gemma":[0.997891,0.0000150478145,0.00042821653,0.0012284651,0.00024551598,0.0001917629],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00041724203,0.0004463683,0.0004903748,0.00020208831,0.00012150627,0.00007173539,0.0005530654,0.0007272719,0.000029390476],"category_scores_gemma":[0.00019017306,0.00050222286,0.00012723892,0.00030918248,0.00013973968,0.0000076047095,0.0018810645,0.0004458204,0.0000039776396],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001169361,0.000103653016,0.0014065951,0.00018666571,0.0001089989,0.00000386617,0.000006449662,0.000028016933,0.99751735,0.00019575896,0.0003080842,0.000017649005],"study_design_scores_gemma":[0.0003590688,0.00041226464,0.019857923,0.00008060963,0.000059011327,7.0814316e-8,0.000004676835,0.000008117675,0.9000478,0.000003143187,0.0786407,0.0005266445],"about_ca_topic_score_codex":0.00006406249,"about_ca_topic_score_gemma":0.0000080289265,"teacher_disagreement_score":0.09746955,"about_ca_system_score_codex":0.00007264601,"about_ca_system_score_gemma":0.00034551838,"threshold_uncertainty_score":0.9997429},"labels":[],"label_agreement":null},{"id":"W4205263136","doi":"10.21203/rs.3.rs-1159977/v1","title":"The emergence of virulence via the collective action of bacterial effectors","year":2022,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Virulence; Effector; Action (physics); Collective action; Biology; Political science; Genetics; Cell biology; Gene; Physics","score_opus":0.03683776737972721,"score_gpt":0.36691778725183777,"score_spread":0.33008001987211055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205263136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955644,0.0013976035,0.00009374856,0.00026754252,0.0010797668,0.0010149303,0.00021717584,0.0000061164537,0.00035870614],"genre_scores_gemma":[0.99486256,0.004100872,0.00003731321,0.0000039265196,0.0002740469,0.00024361741,0.00013194754,0.000020844935,0.00032490154],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975579,0.0008858929,0.00031946268,0.0004191916,0.00048217704,0.00033542482],"domain_scores_gemma":[0.99815243,0.00015719495,0.00024167474,0.000966229,0.00044404122,0.000038414975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014529581,0.00016271105,0.00021379073,0.00008402262,0.0003812587,0.000026275584,0.0010450445,0.00039944382,0.00019709389],"category_scores_gemma":[0.00044503572,0.00010345165,0.00017248321,0.00032554005,0.00068067375,0.0000012240818,0.0024908562,0.0007548324,0.0000017375804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005053626,0.000058910144,0.00028246423,0.00015008223,0.000109588815,6.1512895e-7,0.000080183716,0.00006309053,0.99079144,0.00006433636,0.0012797777,0.006614178],"study_design_scores_gemma":[0.00017019529,0.0012401453,0.005076266,0.000042027714,0.000016741677,0.0000023317384,0.00044493127,0.000051731982,0.9607096,0.00065549614,0.03145753,0.00013301002],"about_ca_topic_score_codex":0.00022835821,"about_ca_topic_score_gemma":0.00021318268,"teacher_disagreement_score":0.03017775,"about_ca_system_score_codex":0.000042232303,"about_ca_system_score_gemma":0.0005223355,"threshold_uncertainty_score":0.42186362},"labels":[],"label_agreement":null},{"id":"W4205312125","doi":"10.1371/journal.pgen.1009991","title":"Analysis of HubP-dependent cell pole protein targeting in Vibrio cholerae uncovers novel motility regulators","year":2022,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Biology; Chemotaxis; Motility; Cell biology; Flagellum; Vibrio cholerae; Caulobacter crescentus; Cell polarity; Live cell imaging; Protein subcellular localization prediction; Cell; Genetics; Gene; Bacteria; Cell cycle; Receptor","score_opus":0.008833605322523747,"score_gpt":0.20676834561556318,"score_spread":0.19793474029303942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205312125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981842,0.00071528374,0.000121710495,0.0000766159,0.00010947268,0.00035537826,0.0002480381,0.000012224744,0.00017707288],"genre_scores_gemma":[0.99823797,0.000060583887,0.0010748324,0.00006901303,0.00005297978,0.00004461266,0.00024766062,0.000029268205,0.00018308999],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981953,0.00009784795,0.0004922859,0.00055705226,0.00030136877,0.00035614858],"domain_scores_gemma":[0.999005,0.0000068644395,0.00023879884,0.00060175813,0.000078084704,0.00006944447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029056342,0.00020691109,0.0003463672,0.00025766558,0.000089768175,0.000015047763,0.00043004498,0.00021682566,0.000098829216],"category_scores_gemma":[0.000036783757,0.00023316039,0.00017131609,0.00069452944,0.00009330498,0.0000019503425,0.00063654553,0.00021351177,0.0000011859705],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006118065,0.00043476,0.021980563,0.000023350762,0.00021403239,0.0000016957855,0.000059803686,0.011888656,0.9651197,0.000009601592,0.000032146094,0.00017450137],"study_design_scores_gemma":[0.00060311815,0.00036632162,0.006387477,0.0000035652631,0.00016410301,0.0000010175955,0.00017205688,0.0029172748,0.98597497,0.00001840316,0.0031667396,0.00022494192],"about_ca_topic_score_codex":0.000059678157,"about_ca_topic_score_gemma":0.00009486703,"teacher_disagreement_score":0.020855272,"about_ca_system_score_codex":0.000058569647,"about_ca_system_score_gemma":0.00011593681,"threshold_uncertainty_score":0.9508005},"labels":[],"label_agreement":null},{"id":"W42055240","doi":"10.2144/03352bm05","title":"<i>Escherichia coli endA</i> deletion strain for use in two-hybrid shuttle vector selection","year":2003,"lang":"en","type":"article","venue":"BioTechniques","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Shuttle vector; Saccharomyces cerevisiae; Genetics; Strain (injury); Library science; Biology; Gene; Vector (molecular biology); Computer science; Recombinant DNA","score_opus":0.01410319644507479,"score_gpt":0.26183859942262494,"score_spread":0.24773540297755015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W42055240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9587378,0.00014827668,0.039813537,0.00013298696,0.00017235798,0.00064809906,0.00011733637,0.000088987465,0.00014065261],"genre_scores_gemma":[0.9553779,0.00022490749,0.04361407,0.0002103358,0.00012973018,0.00012455297,0.00017029901,0.0000322338,0.00011596469],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894714,0.0000801531,0.00022726755,0.0003916275,0.000059722166,0.00029409086],"domain_scores_gemma":[0.99957234,0.0000109359435,0.00007912152,0.00022028976,0.000071790055,0.00004554451],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025400688,0.00017705413,0.0001552539,0.00007982281,0.000056533892,0.00004064544,0.00011821949,0.00031244676,0.0000142147965],"category_scores_gemma":[0.0001096167,0.00018217937,0.00007741529,0.00013538677,0.000061919694,0.000005870671,0.000033417993,0.00012709509,0.0000019040026],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000075025164,0.00006600003,0.00030272614,0.000009896124,0.000011492798,7.4917335e-7,0.0000029669006,0.0000039697247,0.994482,0.0013297716,0.001112616,0.0026028324],"study_design_scores_gemma":[0.0003594099,0.00052266574,0.00038558594,0.000008622921,0.0000070918786,0.000009089047,0.0000046252403,0.00005319122,0.8341136,0.00036606393,0.163978,0.00019205226],"about_ca_topic_score_codex":0.000080790334,"about_ca_topic_score_gemma":0.00025439993,"teacher_disagreement_score":0.16286539,"about_ca_system_score_codex":0.000034083183,"about_ca_system_score_gemma":0.00007353414,"threshold_uncertainty_score":0.7429059},"labels":[],"label_agreement":null},{"id":"W4206119454","doi":"10.1139/cjm-2021-0342","title":"Positive regulation of the MarR-type regulator slnO and improvement of salinomycin production by <i>Streptomyces albus</i> by multiple transcriptional regulation","year":2022,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Salinomycin; Transcriptional regulation; Regulator; Strain (injury); Gene cluster; Gene; Function (biology); Regulator gene","score_opus":0.0031467939903447924,"score_gpt":0.16453660358725317,"score_spread":0.16138980959690838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206119454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959394,0.0015406287,0.000029853112,0.0012717913,0.0005503176,0.00016978027,0.0004889009,8.8887253e-7,0.00000849047],"genre_scores_gemma":[0.999128,0.000055797194,0.00013000831,0.00009537885,0.00007003017,0.0000022655015,0.00029041173,0.000009096009,0.00021900944],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999191,0.000095676354,0.0003576793,0.00016932032,0.000046903904,0.00013941899],"domain_scores_gemma":[0.9991842,0.000007171784,0.0004116822,0.00014985842,0.00019050905,0.00005656066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019483131,0.00009492147,0.00016003243,0.000069707334,0.00010654405,0.0000042984375,0.00016185315,0.00014430839,0.00004513948],"category_scores_gemma":[0.000038148853,0.00008148816,0.00006399183,0.00009935641,0.00025245338,0.000004441891,0.00003588332,0.000111779395,7.9392166e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014118222,0.000022638711,0.002582972,0.000008690637,0.00005904288,1.7917868e-7,0.000046364097,0.00005732826,0.9878019,0.000028171775,0.008266082,0.0009854127],"study_design_scores_gemma":[0.00042384627,0.0007187317,0.0073675946,0.00000939372,0.000027668284,0.00012449588,0.00007181442,0.00000395108,0.946538,0.00006048783,0.04457724,0.00007680261],"about_ca_topic_score_codex":0.00035245105,"about_ca_topic_score_gemma":0.0008080468,"teacher_disagreement_score":0.041263964,"about_ca_system_score_codex":0.000046483307,"about_ca_system_score_gemma":0.000283826,"threshold_uncertainty_score":0.33229905},"labels":[],"label_agreement":null},{"id":"W4206323596","doi":"10.1002/9781119951438.eibc0587","title":"The Ferric Hydroxamate Uptake Receptor<scp>Fhu</scp><scp>A</scp>and Related<scp>Ton</scp><scp>B</scp>‐Dependent Transporters in the Outer Membrane of Gram‐Negative Bacteria","year":2004,"lang":"en","type":"other","venue":"Encyclopedia of Inorganic and Bioinorganic Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Bacterial outer membrane; Ferrichrome; Colicin; Escherichia coli; Enterobactin; ATP-binding cassette transporter; Bacteria; Chemistry; Biochemistry; Transmembrane domain; Biology; Membrane; Transporter","score_opus":0.0038280868437371384,"score_gpt":0.18986793635654495,"score_spread":0.1860398495128078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206323596","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94166744,0.010550704,0.000017714625,0.0001583998,0.0009623101,0.001101735,0.0007259031,0.00009833911,0.044717446],"genre_scores_gemma":[0.7676382,0.106404215,0.00038511577,0.00023995104,0.0013423683,0.000104928906,0.0014927414,0.00078014814,0.12161232],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99429375,0.0002068941,0.0017377782,0.0017555635,0.00066728063,0.0013387239],"domain_scores_gemma":[0.9957283,0.0005508172,0.0015744477,0.0016212773,0.00017925774,0.00034590013],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0007368514,0.0014669384,0.0014729734,0.00020906157,0.0002628691,0.0001318185,0.0017614746,0.0032303468,0.000098379765],"category_scores_gemma":[0.0009846981,0.0011052525,0.0004100553,0.0007255301,0.0013652353,0.000024662437,0.00058981305,0.0013926614,0.000029214354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015314,0.00033420554,0.0008278912,0.0007307653,0.00075644115,0.000047518555,0.0019652955,0.0000015080465,0.969559,0.000035555462,0.025143214,0.0005832789],"study_design_scores_gemma":[0.0023381878,0.00042550135,0.0016420197,0.0003494138,0.0004164533,0.000257295,0.005495992,0.0000026860328,0.7418726,0.0001760734,0.2467732,0.00025057144],"about_ca_topic_score_codex":0.00021249718,"about_ca_topic_score_gemma":0.0002831148,"teacher_disagreement_score":0.2276864,"about_ca_system_score_codex":0.00009873647,"about_ca_system_score_gemma":0.000559845,"threshold_uncertainty_score":0.999808},"labels":[],"label_agreement":null},{"id":"W4210520822","doi":"10.1093/nar/gkac059","title":"RbgA ensures the correct timing in the maturation of the 50S subunits functional sites","year":2022,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute; McGill University","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Mutant; Protein subunit; Binding site; Folding (DSP implementation); Strain (injury); Cell biology; Genetics; Gene; Anatomy","score_opus":0.05675348149512212,"score_gpt":0.3062199841360706,"score_spread":0.2494665026409485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210520822","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949369,0.00046659453,0.000008619584,0.0033637434,0.00018399043,0.00025669904,0.000020470803,0.0000032888152,0.00075972633],"genre_scores_gemma":[0.99898255,0.00009784067,0.000020097164,0.00023615586,0.00013667865,0.000051451756,0.000042638763,0.00000925825,0.00042334365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847317,0.00058889575,0.00014085478,0.00017880884,0.00040123035,0.00021703544],"domain_scores_gemma":[0.999328,0.00007840298,0.00004598044,0.00043227692,0.00010332169,0.000012008306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012671361,0.00006822205,0.00006469741,0.00005361565,0.0004588999,0.000029871453,0.00065733946,0.000097425975,0.00012385321],"category_scores_gemma":[0.0002000522,0.000035881465,0.00005148279,0.00042315183,0.0002730474,0.000001785841,0.0005766847,0.00047803333,0.0000035936578],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013110567,0.000046026107,0.0020285752,0.0000052255186,0.000012477835,8.057334e-7,0.00021073486,0.000087507564,0.9863266,0.00039066185,0.0073863906,0.0033738858],"study_design_scores_gemma":[0.000538301,0.00077364076,0.20703404,0.000010504907,0.0000121375,0.000073573014,0.0034181033,0.00050001626,0.52332026,0.00074899656,0.26339826,0.00017217931],"about_ca_topic_score_codex":0.000047353584,"about_ca_topic_score_gemma":0.000113134076,"teacher_disagreement_score":0.46300635,"about_ca_system_score_codex":0.000018661014,"about_ca_system_score_gemma":0.0000938439,"threshold_uncertainty_score":0.35295334},"labels":[],"label_agreement":null},{"id":"W4210624082","doi":"10.1101/2022.01.31.478169","title":"Mechanistic insights into intramembrane proteolysis by <i>E. coli</i> site-2 protease homolog RseP","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Institute for Protein Research, Osaka University; Life Science Center for Survival Dynamics Tsukuba Advanced Research Alliance; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Keio University; Institute for Frontier Life and Medical Sciences, Kyoto University; University of Tsukuba; Japan Agency for Medical Research and Development","keywords":"Proteases; Transmembrane domain; Transmembrane protein; Proteolysis; Biology; Cleave; Biochemistry; Proteostasis; Biophysics; Cell biology; Membrane; Enzyme","score_opus":0.005177470975785206,"score_gpt":0.19601823865348061,"score_spread":0.19084076767769542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210624082","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901786,0.0032581482,0.001924589,0.00042543333,0.0011428172,0.0022017735,0.0006307718,0.00022764514,0.000010246633],"genre_scores_gemma":[0.99164194,0.0013036901,0.0038452768,0.0005851307,0.00054927124,0.0018021718,0.000035236135,0.00020159359,0.000035716035],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959535,0.00030540238,0.00070860906,0.0018943278,0.0004026871,0.0007354974],"domain_scores_gemma":[0.9966375,0.000015341111,0.0005569503,0.0021099448,0.0003451972,0.00033502997],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00039856395,0.00084954314,0.00073778006,0.00024647432,0.0003787005,0.00018369067,0.0011593653,0.0016460912,0.00015613344],"category_scores_gemma":[0.0002301913,0.0009230448,0.0002705404,0.0004817193,0.00029181183,0.000007695927,0.0021781991,0.0011420625,0.000042843953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001400237,0.0003136738,0.00012774255,0.0002977367,0.0002410595,0.00005294106,0.0000068686827,0.000028036862,0.9973175,0.00019266151,0.0012722281,0.000009534464],"study_design_scores_gemma":[0.0005655751,0.0004729071,0.00034723946,0.00005290897,0.0001551433,7.786063e-8,0.0000030503204,0.00008223979,0.87630045,0.000018677049,0.120985806,0.0010159157],"about_ca_topic_score_codex":0.00014687677,"about_ca_topic_score_gemma":0.000011174092,"teacher_disagreement_score":0.12101703,"about_ca_system_score_codex":0.0001783315,"about_ca_system_score_gemma":0.00071550143,"threshold_uncertainty_score":0.99965},"labels":[],"label_agreement":null},{"id":"W4210678957","doi":"10.3389/fmicb.2021.732288","title":"The Cpx Stress Response Regulates Turnover of Respiratory Chain Proteins at the Inner Membrane of Escherichia coli","year":2022,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Regulon; Biology; Respiratory chain; Cell envelope; Bacterial outer membrane; NADH dehydrogenase; Escherichia coli; Inner membrane; Cell biology; Membrane protein; Biochemistry; Gene; Mitochondrion; Protein subunit; Membrane","score_opus":0.004461205921922906,"score_gpt":0.1952343839220782,"score_spread":0.1907731780001553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210678957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99322903,0.004423701,0.000030382427,0.0008629859,0.00069146394,0.00044903133,0.00027712554,0.0000047046224,0.0000315935],"genre_scores_gemma":[0.9979894,0.0001721666,0.0003970537,0.00021828989,0.000050593288,0.00008389635,0.00008294799,0.000021252656,0.0009843601],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99816316,0.0007573742,0.0004050162,0.00031631556,0.000057744997,0.0003003958],"domain_scores_gemma":[0.9989726,0.00004425504,0.00028500924,0.00062039815,0.000057662353,0.000020104666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009547247,0.00015513394,0.00025780688,0.00007391319,0.00018824737,0.0000046931887,0.0006322553,0.00026872702,0.000033055505],"category_scores_gemma":[0.00012531229,0.000103854516,0.00009194278,0.00021917936,0.0008792789,0.0000012575537,0.0007686639,0.0002344376,5.803359e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002589428,0.000061989114,0.0020282264,0.00001185664,0.00007622117,0.0000016737891,0.00007897754,0.00010770857,0.98765653,0.000039413542,0.0068912026,0.0004567685],"study_design_scores_gemma":[0.00047792005,0.0005567657,0.0015744778,0.000004542185,0.000008773074,0.000006903706,0.00023658799,0.0000059273034,0.7680122,0.000038217997,0.22897951,0.00009813433],"about_ca_topic_score_codex":0.000026528616,"about_ca_topic_score_gemma":0.00016056946,"teacher_disagreement_score":0.2220883,"about_ca_system_score_codex":0.00004612056,"about_ca_system_score_gemma":0.00012511328,"threshold_uncertainty_score":0.42350644},"labels":[],"label_agreement":null},{"id":"W4210771143","doi":"10.1139/cjm-2021-0238","title":"Bacterial cell wall quantification by a modified low-volume Nelson–Somogyi method and its use with different sugars","year":2022,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Peptidoglycan; Diaminopimelic acid; Cell wall; Biochemistry; Monosaccharide; Polysaccharide; Bacterial cell structure; Hydrolysis; Substrate (aquarium); Muramic acid; N-Acetylglucosamine; Chemistry; Biology; Chromatography; Enzyme; Bacteria","score_opus":0.009940519279733728,"score_gpt":0.1990308506165271,"score_spread":0.18909033133679337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210771143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99688524,0.000839787,0.00064051116,0.00060223514,0.00043825962,0.00014661663,0.0004363205,0.000002672528,0.000008359814],"genre_scores_gemma":[0.9983076,0.00011014102,0.00038039678,0.0002913711,0.000092250215,0.000006898822,0.0003453637,0.000024192945,0.00044182912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987783,0.00023600986,0.00031243547,0.00029290724,0.00003524817,0.0003451158],"domain_scores_gemma":[0.99916077,0.000013377764,0.00027351856,0.00019275266,0.00012535758,0.00023423092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020357747,0.00018010529,0.00026677793,0.0001386137,0.00016756225,0.000042926324,0.00029033818,0.00024431798,0.00013349617],"category_scores_gemma":[0.00002684253,0.00015663652,0.00006238599,0.00007075459,0.00011136747,0.000005436627,0.00007227205,0.00024739615,0.0000011925592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021708694,0.0000328738,0.0008465553,0.0000073840615,0.000055959717,0.0000166353,0.000035403806,0.000070013964,0.9939873,0.000021320191,0.004389242,0.00032022828],"study_design_scores_gemma":[0.0015004684,0.002019166,0.0018822468,0.000007875538,0.0000614262,0.0011773097,0.000054787317,0.000052178642,0.7245936,0.000017495862,0.26830256,0.0003309237],"about_ca_topic_score_codex":0.0008000184,"about_ca_topic_score_gemma":0.00362043,"teacher_disagreement_score":0.2693937,"about_ca_system_score_codex":0.000054040764,"about_ca_system_score_gemma":0.00037969553,"threshold_uncertainty_score":0.63874525},"labels":[],"label_agreement":null},{"id":"W4211120128","doi":"10.1128/9781555816841.ch9","title":"Osmotic Stress","year":2014,"lang":"en","type":"book-chapter","venue":"ASM Press eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Osmoregulation; Osmotic shock; Osmotic pressure; Biology; Osmotic concentration; Mechanosensitive channels; Biochemistry; Transcription (linguistics); Cell biology; Gene; Salinity; Ion channel; Ecology","score_opus":0.013777022965903366,"score_gpt":0.21214064577459166,"score_spread":0.1983636228086883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4211120128","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0020633212,0.0011074119,0.00021698394,0.000039415503,0.00070398714,0.00034271937,0.00015925182,0.000056066157,0.99531084],"genre_scores_gemma":[0.052084737,0.000397045,0.00024645813,0.00019452586,0.0010947017,0.000020452826,0.00031887673,0.0001250052,0.9455182],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986279,0.000019705794,0.00029184157,0.0006137898,0.000138405,0.00030833264],"domain_scores_gemma":[0.99870855,0.000007301784,0.00019463534,0.000911953,0.00008131588,0.00009621827],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00007268822,0.00039985628,0.00033603839,0.000050192208,0.000057247908,0.000040797007,0.0004769565,0.0013521416,0.000040570834],"category_scores_gemma":[0.000013335537,0.00038646456,0.00017789975,0.0000021250255,0.00020932106,3.925101e-7,0.0004279118,0.0002857016,0.00003658954],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019730863,0.00004136451,0.000009193569,0.0003034937,0.00084023946,0.00004509457,0.000035266945,0.000010301228,0.5717694,0.2901077,0.021991802,0.114648834],"study_design_scores_gemma":[0.0002260124,0.00024821024,0.0000054130055,0.000052933687,0.00006374038,0.000014237931,5.273253e-7,0.0000025693635,0.18169689,0.0012252672,0.816079,0.00038519868],"about_ca_topic_score_codex":0.000020096884,"about_ca_topic_score_gemma":0.000032967924,"teacher_disagreement_score":0.7940872,"about_ca_system_score_codex":0.000008954357,"about_ca_system_score_gemma":0.00004876802,"threshold_uncertainty_score":0.9999443},"labels":[],"label_agreement":null},{"id":"W4211224524","doi":"10.1016/j.bpj.2021.11.940","title":"Impact of cytosolic crowders on the morphology of bacterial chromosomes","year":2022,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Nucleoid; Macromolecular crowding; Ribosome; DNA; Macromolecule; Organelle; Chromosome; Cytosol; Biophysics; Biology; Circular bacterial chromosome; Cell biology; Chemistry; DNA supercoil; Biochemistry; Escherichia coli; RNA; DNA replication","score_opus":0.010584259301762098,"score_gpt":0.24881492375821135,"score_spread":0.23823066445644925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4211224524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99908364,0.000025693827,0.000012485779,0.00035029172,0.0002926672,0.000072928946,0.000088759436,0.0000024532148,0.00007107769],"genre_scores_gemma":[0.9993461,0.00005507662,0.00003721378,0.00006207035,0.0004390919,0.000005328547,0.000020945174,0.000012235781,0.000021939935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916905,0.00012771643,0.0002333612,0.00014419673,0.00013826934,0.00018738845],"domain_scores_gemma":[0.99940675,0.000017217999,0.00022564264,0.00025175983,0.00005345262,0.000045159908],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001251119,0.0001130912,0.00019102241,0.00004590397,0.00011143197,0.000008624262,0.0003716868,0.00009203067,0.00038682506],"category_scores_gemma":[0.000035376594,0.00007275014,0.000269629,0.00010816142,0.00023054081,0.0000012291355,0.00021623357,0.0002242328,0.0000020924715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039025175,0.0002094878,0.00022133537,0.0000019433073,0.0001179917,0.0000037871098,0.000017762304,0.000061171006,0.99704385,0.00022186348,0.0011710717,0.0005394829],"study_design_scores_gemma":[0.0004940416,0.004596693,0.008627758,0.0000028479712,0.000017495773,0.00013297617,0.00003268743,0.000010029384,0.98370224,0.0000958599,0.0021905727,0.000096803546],"about_ca_topic_score_codex":0.000010863977,"about_ca_topic_score_gemma":5.0815356e-7,"teacher_disagreement_score":0.013341617,"about_ca_system_score_codex":0.000018207304,"about_ca_system_score_gemma":0.00010822176,"threshold_uncertainty_score":0.4235463},"labels":[],"label_agreement":null},{"id":"W4212924812","doi":"10.1101/2022.02.17.480891","title":"The stationary phase-specific sRNA <i>fimR2</i> is a multifunctional regulator of bacterial motility, biofilm formation and virulence","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Keio University; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Université de Sherbrooke; National Science Foundation","keywords":"Virulence; RNase P; Biology; Biofilm; Salmonella enterica; Effector; Secretion; Motility; Cell biology; Microbiology; rpoS; Regulator; Escherichia coli; Type three secretion system; Bacteria; RNA; Gene; Gene expression; Genetics; Biochemistry; Promoter","score_opus":0.012365555779217809,"score_gpt":0.22140149486187186,"score_spread":0.20903593908265405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4212924812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932602,0.0023330064,0.0004907001,0.00031584725,0.0012917204,0.0005267951,0.0017405627,0.000037782575,0.0000033839003],"genre_scores_gemma":[0.99387264,0.0035324232,0.0018721677,0.00009526877,0.00041585075,0.00013224984,0.000021256865,0.00004932863,0.000008804969],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998007,0.00012937553,0.00056214724,0.00070954213,0.00027786684,0.0003140462],"domain_scores_gemma":[0.99812806,0.00002798522,0.00050044165,0.000934895,0.00031345518,0.00009517293],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045140105,0.0003383321,0.00028783563,0.000095311276,0.00030255003,0.000100931815,0.00046787394,0.0005095175,0.00008593972],"category_scores_gemma":[0.0000672879,0.00031403068,0.00011793001,0.00016704125,0.0003365992,0.000011944778,0.0009758691,0.00034330177,0.0000030173962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002562359,0.00011909112,0.00024234745,0.00008401877,0.00008582935,0.0000015588889,0.000006619681,0.0000073633687,0.99791425,0.00018691304,0.0010182078,0.00007755516],"study_design_scores_gemma":[0.0007904029,0.00026443112,0.0093710255,0.00002766902,0.000033876837,9.491588e-8,0.00000804244,0.00017413945,0.8224706,0.000007804271,0.1665568,0.00029509972],"about_ca_topic_score_codex":0.000010330438,"about_ca_topic_score_gemma":0.0000021706455,"teacher_disagreement_score":0.17544365,"about_ca_system_score_codex":0.00005653812,"about_ca_system_score_gemma":0.00027250746,"threshold_uncertainty_score":0.99993116},"labels":[],"label_agreement":null},{"id":"W4213076254","doi":"10.1101/2022.02.11.480155","title":"Bacterial outer-membrane polysaccharide export (OPX) proteins occupy three structural classes with selective β-barrel porin requirements for polymer secretion","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; PROTEO; Institut National de la Recherche Scientifique","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Porin; Secretion; Biology; Myxococcus xanthus; Inner membrane; Biochemistry; Bacteria; Cell envelope; Escherichia coli; Microbiology; Cell biology; Gene; Genetics; Membrane","score_opus":0.013649901289753304,"score_gpt":0.23243045473379503,"score_spread":0.21878055344404174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213076254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99121785,0.00039374887,0.0020801723,0.00022108984,0.0020895589,0.0024074982,0.0014260462,0.0001587662,0.0000052653936],"genre_scores_gemma":[0.992242,0.00012586394,0.0044129537,0.00015762598,0.0015113254,0.0012644179,0.000051431085,0.00021058973,0.000023792238],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962134,0.00012119062,0.00069825567,0.0017228649,0.00039542874,0.00084890524],"domain_scores_gemma":[0.9971191,0.000013749928,0.0007796133,0.0013828328,0.00044314584,0.00026153802],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00037367144,0.0008422787,0.0007238862,0.00021923667,0.00032610106,0.00019467236,0.0008257643,0.001105363,0.000121434976],"category_scores_gemma":[0.00011039482,0.0008245523,0.00024771463,0.0002728343,0.00020251497,0.000018669927,0.0009464894,0.0006522553,0.0000034117495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010936914,0.00009403919,0.0035918911,0.0001794347,0.0004667098,0.00001851398,0.00000496181,0.000011902265,0.99427605,0.00014238738,0.00011029933,0.00001009738],"study_design_scores_gemma":[0.0014719798,0.0011344972,0.018661812,0.00007969985,0.0001752668,3.0114646e-7,0.0000051873426,0.00004539703,0.9711921,0.000004647515,0.006174946,0.0010541265],"about_ca_topic_score_codex":0.00010683873,"about_ca_topic_score_gemma":0.00005354639,"teacher_disagreement_score":0.023083933,"about_ca_system_score_codex":0.00020124471,"about_ca_system_score_gemma":0.0012414891,"threshold_uncertainty_score":0.9994205},"labels":[],"label_agreement":null},{"id":"W4213432794","doi":"10.1371/journal.pbio.3001528","title":"The noncoding RNA CcnA modulates the master cell cycle regulators CtrA and GcrA in Caulobacter crescentus","year":2022,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Agence Nationale de la Recherche","keywords":"Caulobacter crescentus; Biology; Cell cycle; Cell biology; Regulator; Cell division; Genetics; Computational biology; Cell; Gene","score_opus":0.00794950450392217,"score_gpt":0.19767193189614224,"score_spread":0.18972242739222006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213432794","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946844,0.0016393529,0.0000066636094,0.002725748,0.00029582833,0.00023027632,0.00002959495,0.000010987406,0.00037712528],"genre_scores_gemma":[0.99830824,0.0006862485,0.00005772222,0.00039148514,0.00014192048,0.000054710355,0.00004204139,0.000018596806,0.00029905446],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987634,0.0001877887,0.00022484435,0.00037890437,0.000060369242,0.00038469702],"domain_scores_gemma":[0.999409,0.000033858076,0.00008781141,0.00041016602,0.000020972753,0.000038150145],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023917796,0.00015789301,0.0001461507,0.00003980978,0.0003281651,0.00003108504,0.00038998434,0.00019450707,0.00003113081],"category_scores_gemma":[0.000024008155,0.000099186014,0.000050772018,0.00010035335,0.00022277044,0.0000018553995,0.0006850218,0.0002517712,0.0000033719016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008463575,0.00005161212,0.006381267,0.000004757713,0.000029259496,0.000002358768,0.000050174818,0.000015422796,0.98939186,0.00018539296,0.0001973745,0.0036058666],"study_design_scores_gemma":[0.0012459898,0.0009944616,0.019759344,0.0000073549522,0.00003730073,0.000053839154,0.00047691216,0.0006245023,0.82849354,0.0016825141,0.14615159,0.00047265604],"about_ca_topic_score_codex":0.00005166738,"about_ca_topic_score_gemma":0.00011896096,"teacher_disagreement_score":0.16089834,"about_ca_system_score_codex":0.000024512732,"about_ca_system_score_gemma":0.000032404314,"threshold_uncertainty_score":0.40446883},"labels":[],"label_agreement":null},{"id":"W4214826609","doi":"10.1038/s41564-022-01073-4","title":"ClpP inhibitors are produced by a widespread family of bacterial gene clusters","year":2022,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; McMaster University","funders":"Canadian Institutes of Health Research; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Canada Excellence Research Chairs, Government of Canada; National Research Council Canada; Canada Foundation for Innovation; Government of Canada; Canadian Light Source","keywords":"Gene; Genetics; Biology; Gene cluster; Computational biology","score_opus":0.0030367081523387184,"score_gpt":0.1962240313410174,"score_spread":0.19318732318867868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214826609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99034256,0.0048546162,0.000013120691,0.0006353785,0.0026578263,0.00032136217,0.0011237713,0.000022229027,0.000029167037],"genre_scores_gemma":[0.99544156,0.00015817427,0.00033778825,0.0009100605,0.0004295876,0.00004080933,0.0024778596,0.000035429104,0.00016871873],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840796,0.00018266188,0.000348184,0.00062915456,0.0000630035,0.00036903823],"domain_scores_gemma":[0.9990788,0.000011523576,0.00028761264,0.00048248682,0.000091105765,0.000048441867],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002086842,0.00024112679,0.00033581053,0.0000925118,0.000118214826,0.000008489413,0.00047870114,0.0008855338,0.00007102776],"category_scores_gemma":[0.00006649856,0.00023468853,0.00013086695,0.00017234127,0.00020853146,0.0000016808842,0.00066452904,0.00052573835,0.0000049130895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004205937,0.0001087757,0.00022035427,0.000011436697,0.00009015829,0.000003055397,0.000015826947,0.000005716142,0.9405801,0.000010460121,0.05805996,0.00047350745],"study_design_scores_gemma":[0.0005592961,0.0005391154,0.00007152537,0.00000284099,0.00001682605,0.0000390525,0.00003595476,5.5713053e-7,0.6565636,0.000007140767,0.34199268,0.00017141431],"about_ca_topic_score_codex":0.000011272016,"about_ca_topic_score_gemma":0.000010723855,"teacher_disagreement_score":0.28401655,"about_ca_system_score_codex":0.000032168595,"about_ca_system_score_gemma":0.00009289846,"threshold_uncertainty_score":0.9570321},"labels":[],"label_agreement":null},{"id":"W4214851245","doi":"10.1101/2022.03.01.481631","title":"Deletion of <i>proU</i> suppresses <i>proQ</i> phenotypes in <i>Escherichia coli</i>","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Escherichia coli; Operon; Biology; Phenotype; Osmolyte; Suppressor mutation; Cell biology; Gene; Chemistry; Biochemistry","score_opus":0.007827254350646396,"score_gpt":0.20611528850154698,"score_spread":0.19828803415090057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214851245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945359,0.002808238,0.00019260302,0.00019383171,0.0010048513,0.0006874156,0.00047301687,0.00006792562,0.000036173788],"genre_scores_gemma":[0.99418914,0.001785782,0.0030178158,0.00029067014,0.00032108373,0.00026386173,0.000008027796,0.00011498549,0.000008614427],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99731994,0.00018430976,0.0006649884,0.0010478353,0.00026899404,0.0005139584],"domain_scores_gemma":[0.9978689,0.000015309226,0.00047852774,0.0012875608,0.0002404932,0.00010923835],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044464375,0.00049738976,0.000588511,0.0001880808,0.000081537284,0.000051869338,0.00082457595,0.0009727814,0.000063255924],"category_scores_gemma":[0.000116769654,0.00056900096,0.00017268736,0.00040747816,0.00019607597,0.0000060452585,0.0013465894,0.0006836376,0.000005323138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014506617,0.00024524864,0.0032034554,0.00026280235,0.00008833289,0.000010332423,0.0000036144004,0.00013488666,0.9952432,0.00020884401,0.00044972776,0.000004518006],"study_design_scores_gemma":[0.0005523979,0.0002481122,0.00869156,0.000071303955,0.00005376269,1.7702453e-8,0.0000039129363,0.000026413596,0.930925,0.0000057708457,0.058850314,0.00057144114],"about_ca_topic_score_codex":0.00010526217,"about_ca_topic_score_gemma":0.000020582787,"teacher_disagreement_score":0.06431818,"about_ca_system_score_codex":0.00007009551,"about_ca_system_score_gemma":0.0005136044,"threshold_uncertainty_score":0.99967617},"labels":[],"label_agreement":null},{"id":"W4214917014","doi":"10.1101/2022.03.03.482899","title":"Development of a Method Combining Peptidiscs and Proteomics to Identify, Stabilize and Purify a Detergent-Sensitive Membrane Protein Assembly","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of Regina; University of British Columbia","funders":"Canadian Institutes of Health Research; Genome British Columbia; Genome Canada","keywords":"Proteome; Translocon; Proteomics; Membrane protein; Protein purification; Membrane; Chemistry; Dissociation (chemistry); Integral membrane protein; Human proteome project; Computational biology; Chromatography; Biochemistry; Biology; Biophysics; Gene","score_opus":0.013988927986403905,"score_gpt":0.25784052953695574,"score_spread":0.24385160155055183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214917014","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936624,0.00032840553,0.0036598642,0.00012840724,0.00023663,0.0017252046,0.00021455079,0.0000422652,0.0000022274878],"genre_scores_gemma":[0.80661064,0.00012507883,0.19264424,0.00005020504,0.000066163884,0.00042196998,0.0000024282347,0.00007520516,0.0000040904897],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99737984,0.00020472964,0.0006145613,0.0011419993,0.00023556488,0.00042332656],"domain_scores_gemma":[0.99836516,0.000014404025,0.00040987035,0.00073444843,0.00026138138,0.00021475497],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008773331,0.00047297665,0.0005794892,0.00019512951,0.0001670313,0.00009381742,0.00034902897,0.0006473625,0.000009143768],"category_scores_gemma":[0.00017974881,0.00052351056,0.00007957673,0.00020534612,0.00012104284,0.0000055846904,0.002561196,0.00044505196,0.0000011603429],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013788308,0.00008721596,0.00024111464,0.00036740725,0.00019236459,0.000008937133,0.00004346229,0.000009170322,0.99880517,0.00007272058,0.000005870655,0.000028713328],"study_design_scores_gemma":[0.0004806167,0.00025535823,0.008066983,0.00013532875,0.0000602537,1.4556416e-7,0.000027264368,0.00004317595,0.98596627,0.0000016920851,0.004383785,0.0005791368],"about_ca_topic_score_codex":0.000021919666,"about_ca_topic_score_gemma":0.000013628653,"teacher_disagreement_score":0.18898438,"about_ca_system_score_codex":0.00006557533,"about_ca_system_score_gemma":0.00051469565,"threshold_uncertainty_score":0.99972165},"labels":[],"label_agreement":null},{"id":"W4220743135","doi":"10.1021/acssynbio.1c00524","title":"Conjugation-Based Genome Engineering in <i>Deinococcus radiodurans</i>","year":2022,"lang":"en","type":"article","venue":"ACS Synthetic Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Deinococcus radiodurans; Plasmid; Genome; Genome engineering; Biology; Synthetic biology; Computational biology; Genetics; Genome editing; Gene","score_opus":0.005165109368468879,"score_gpt":0.19748564780919342,"score_spread":0.19232053844072455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220743135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99706477,0.0006961465,0.0005723824,0.000827974,0.00032424787,0.00023401424,0.00007012004,0.000029792205,0.0001805558],"genre_scores_gemma":[0.9984875,0.00006515071,0.00036147342,0.00049428234,0.00009496647,0.00014270534,0.000273911,0.000025457244,0.00005457729],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987819,0.00010665176,0.00025736762,0.00043797636,0.000057469682,0.00035858905],"domain_scores_gemma":[0.9994459,0.000025120247,0.00006738661,0.00039310905,0.000023382188,0.000045100387],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023786999,0.0001700492,0.00019810771,0.00012948412,0.0000865808,0.000008548004,0.00035943498,0.00022316336,0.00011896353],"category_scores_gemma":[0.000056748566,0.00017894425,0.00006327921,0.00017809315,0.000106005224,0.0000010348965,0.00019417901,0.00020470179,0.000008331717],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058560152,0.000061091814,0.0015057533,0.0000064983406,0.00001756047,0.000004734647,0.000013257357,0.0017839597,0.99483746,0.00041894775,0.000042140713,0.001250048],"study_design_scores_gemma":[0.0018495388,0.0013030949,0.003843777,0.0000055149335,0.00001926027,0.000072566756,0.00004041894,0.0006713811,0.64150846,0.00021021001,0.34991142,0.0005643409],"about_ca_topic_score_codex":0.000029229943,"about_ca_topic_score_gemma":0.000015446954,"teacher_disagreement_score":0.35332897,"about_ca_system_score_codex":0.000036620415,"about_ca_system_score_gemma":0.00007774002,"threshold_uncertainty_score":0.72971344},"labels":[],"label_agreement":null},{"id":"W4220984643","doi":"10.7554/elife.69511","title":"A qnr-plasmid allows aminoglycosides to induce SOS in Escherichia coli","year":2022,"lang":"en","type":"article","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Université de Reims Champagne-Ardenne; Centre National de la Recherche Scientifique; Institut Pasteur; Institut National de la Santé et de la Recherche Médicale; Centers for Disease Control and Prevention; Agence Nationale de la Recherche; Conseil Régional Champagne Ardenne; International Union of Biochemistry and Molecular Biology","keywords":"SOS response; Escherichia coli; Plasmid; Transcription (linguistics); Antibiotics; Transcription factor; Gene; Regulon; Oxidoreductase","score_opus":0.010017671066781286,"score_gpt":0.23128839904526297,"score_spread":0.22127072797848168,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220984643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997708,0.0002108633,0.000042216412,0.0009177777,0.00034820198,0.00024678552,0.000034422097,0.000019013158,0.00047266795],"genre_scores_gemma":[0.99468964,0.000049985723,0.00109019,0.0033492427,0.00015736902,0.00014209583,0.000051507443,0.000023118666,0.0004468699],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989172,0.00006471454,0.00020337825,0.00037252257,0.00014294965,0.00029919719],"domain_scores_gemma":[0.99952286,0.0000052500304,0.000048611637,0.0003205392,0.000028605715,0.000074102296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017489547,0.0001376871,0.00014640804,0.000080856815,0.00008978046,0.000017233022,0.00032368477,0.00015188985,0.00009098923],"category_scores_gemma":[0.000056093762,0.00014943599,0.000047983864,0.0002270725,0.000036071087,0.0000012339978,0.000574861,0.00018920771,0.000029843484],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000092526854,0.00008250799,0.0013157842,0.0000030579158,0.000014435804,0.00000862438,0.000049834198,0.000109208704,0.9926111,0.000060622384,0.0044201175,0.0012321407],"study_design_scores_gemma":[0.00031099812,0.00043662786,0.0036192848,0.0000021331791,0.0000032653827,0.000006531788,0.0000870473,0.000021007827,0.61168116,0.000014987945,0.38365364,0.00016330756],"about_ca_topic_score_codex":0.000068007816,"about_ca_topic_score_gemma":0.0001966117,"teacher_disagreement_score":0.38092998,"about_ca_system_score_codex":0.000029832012,"about_ca_system_score_gemma":0.0000902802,"threshold_uncertainty_score":0.60938233},"labels":[],"label_agreement":null},{"id":"W4224306242","doi":"10.3410/f.740384462.793592462","title":"Faculty Opinions recommendation of Single-molecule imaging of LexA degradation in Escherichia coli elucidates regulatory mechanisms and heterogeneity of the SOS response.","year":2022,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Repressor lexA; Escherichia coli; Degradation (telecommunications); SOS response; Chemistry; Computational biology; Biology; Computer science; Biochemistry; Repressor; Gene","score_opus":0.017682469569938665,"score_gpt":0.29775397675607734,"score_spread":0.28007150718613866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224306242","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034726334,0.0012784954,0.000035515975,0.030795222,0.00036209956,0.00082918385,0.96321803,0.000005483122,0.0000033553088],"genre_scores_gemma":[0.0032359355,0.00031149064,0.0005862568,0.0006726106,0.000035088793,0.00007357182,0.99501127,0.000017640485,0.0000561629],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970008,0.0007019268,0.0011051995,0.00047932795,0.00051670754,0.00019605203],"domain_scores_gemma":[0.9961217,0.000042230513,0.001435689,0.0010860958,0.0012453651,0.00006893343],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012459636,0.00029284693,0.0005444698,0.00018947308,0.00010408768,0.000025026808,0.0009672185,0.0005035084,0.000106238775],"category_scores_gemma":[0.0021099667,0.00019996436,0.00027872634,0.0008793544,0.00041817632,0.000016855185,0.0009128547,0.00040627006,2.741574e-7],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099432655,0.0003119162,0.000027576927,0.0017083441,0.000100126934,7.892352e-8,0.000028285525,4.5512937e-7,0.11121747,0.0001029451,0.88574535,0.0006580167],"study_design_scores_gemma":[0.00045109127,0.00023045769,0.0038353174,0.0011709655,0.00007709374,0.0000118657745,0.00002954283,0.0000052385244,0.087138526,0.000024375904,0.90684867,0.00017683273],"about_ca_topic_score_codex":0.000043489206,"about_ca_topic_score_gemma":0.000018219665,"teacher_disagreement_score":0.031793233,"about_ca_system_score_codex":0.00004283808,"about_ca_system_score_gemma":0.00032135204,"threshold_uncertainty_score":0.815431},"labels":[],"label_agreement":null},{"id":"W4225364091","doi":"10.1186/s12859-021-04536-3","title":"vCOMBAT: a novel tool to create and visualize a computational model of bacterial antibiotic target-binding","year":2022,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Polytechnique Montréal","funders":"Norges Forskningsråd; National Center for Advancing Translational Sciences; Universitetet i Tromsø; European Molecular Biology Organization; Bill and Melinda Gates Foundation","keywords":"Antibiotics; Dosing; Antibiotic resistance; Computer science; Rifampicin; Computational biology; Bacteria; Biochemical engineering; Biology; Microbiology; Pharmacology; Engineering","score_opus":0.01690757740222136,"score_gpt":0.24422808697473308,"score_spread":0.2273205095725117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225364091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91540927,0.000024129531,0.0834744,0.0000549519,0.00014912027,0.00025784067,0.00048623374,0.000013518745,0.00013053721],"genre_scores_gemma":[0.6459187,0.000012802576,0.35336792,0.00016938549,0.000037089554,0.000010027996,0.00037774027,0.000016180345,0.00009014149],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99906707,0.000016268657,0.00038471635,0.00017078775,0.00015037076,0.0002107675],"domain_scores_gemma":[0.9995194,0.00000956807,0.00015514153,0.00020137825,0.000054219647,0.00006030028],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018371649,0.00014432117,0.000191959,0.000101519,0.00012576046,0.000028538776,0.00019105183,0.000114942595,0.000023012799],"category_scores_gemma":[0.000042707165,0.0001465571,0.000056037657,0.00012257343,0.000068377376,0.000005368554,0.0005704907,0.00007761168,0.00000289274],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024141968,0.00012765826,0.0004691829,0.000111273985,0.000048787486,2.9513285e-7,0.00026015198,0.047906175,0.9483034,0.0011225705,0.0004886664,0.00092044065],"study_design_scores_gemma":[0.0022654159,0.0014957122,0.0009591675,0.000021928929,0.000044217086,0.00006758925,0.00042728038,0.85249734,0.13252795,0.00023909622,0.008860784,0.0005935222],"about_ca_topic_score_codex":0.000003627153,"about_ca_topic_score_gemma":0.0000020285668,"teacher_disagreement_score":0.81577545,"about_ca_system_score_codex":0.000015158544,"about_ca_system_score_gemma":0.00012249676,"threshold_uncertainty_score":0.5976425},"labels":[],"label_agreement":null},{"id":"W4225975006","doi":"10.7554/elife.72822","title":"Reconstitution of surface lipoprotein translocation through the Slam translocon","year":2022,"lang":"en","type":"article","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Periplasmic space; Bacterial outer membrane; Translocon; Chromosomal translocation; Biology; Cell biology; Escherichia coli; Microbiology; Biochemistry; Biophysics; Gene","score_opus":0.011383967924968826,"score_gpt":0.22820105787149597,"score_spread":0.21681708994652715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225975006","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926845,0.0014706156,0.0028190902,0.0017652882,0.00027533039,0.00028791273,0.000044177657,0.000011632744,0.00064149476],"genre_scores_gemma":[0.9983971,0.00042008425,0.0006307979,0.00019982734,0.00008302901,0.000029394065,0.00007264789,0.000008205053,0.00015892116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993451,0.000074828065,0.00017817762,0.00017512232,0.000111925794,0.00011480712],"domain_scores_gemma":[0.9996075,0.000004079256,0.000072280476,0.0002646154,0.00003883712,0.000012712508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019279392,0.0000757806,0.000086690874,0.000010553911,0.00013829593,0.0000052106557,0.0002029267,0.00008892906,0.0000597591],"category_scores_gemma":[0.000012319355,0.00006197234,0.000059823073,0.00010170086,0.00012458673,0.0000016383975,0.000048784343,0.00010211786,0.0000022613217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000064390515,0.000038347895,0.00003145533,0.000005223378,0.000020328898,2.6872488e-7,0.00010514793,0.00072323624,0.9903346,0.0008652151,0.00041268897,0.0073991045],"study_design_scores_gemma":[0.00024723756,0.00024931674,0.00012813308,0.0000023269315,0.000008063595,0.0000100379575,0.00012335376,0.000032699663,0.8257599,0.00009757862,0.17327036,0.00007099463],"about_ca_topic_score_codex":0.000095233714,"about_ca_topic_score_gemma":0.000052923966,"teacher_disagreement_score":0.17285767,"about_ca_system_score_codex":0.000007597314,"about_ca_system_score_gemma":0.00007114711,"threshold_uncertainty_score":0.2527159},"labels":[],"label_agreement":null},{"id":"W4226219258","doi":"10.3389/fmicb.2021.781960","title":"Oligomerization of the FliF Domains Suggests a Coordinated Assembly of the Bacterial Flagellum MS Ring","year":2022,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Centre for Blood Research, University of British Columbia; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences","keywords":"Periplasmic space; Flagellum; Biology; Cell biology; Ring (chemistry); Transmembrane domain; Basal body; Protein structure; Bacterial cell structure; RING finger domain; Cell envelope; Crystallography; Chemistry; Biochemistry; Escherichia coli; Gene; Bacteria; Genetics; Transcription factor","score_opus":0.003308792717279991,"score_gpt":0.1878254146438296,"score_spread":0.1845166219265496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226219258","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959077,0.00024061545,0.00027545256,0.00026943695,0.0027751953,0.0002803159,0.000163423,0.0000044698977,0.000083365594],"genre_scores_gemma":[0.9990228,0.00005748363,0.00047183144,0.00008371075,0.000060947154,0.000017612416,0.00012235441,0.000015006872,0.0001482986],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884653,0.000304868,0.00032156173,0.00025819728,0.00004176253,0.00022706417],"domain_scores_gemma":[0.9992438,0.0000065261333,0.00026070955,0.0004355844,0.000039775463,0.000013582715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020662806,0.00012586005,0.00023036469,0.00006628599,0.00010196411,0.0000037714144,0.00064042263,0.0002378994,0.000023218543],"category_scores_gemma":[0.000054163218,0.00009134085,0.00011007873,0.00030188396,0.00032943176,0.0000014462057,0.00075220293,0.00017549202,2.440404e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011883703,0.000054770037,0.008699648,0.000010349841,0.00004174695,3.7857367e-7,0.000043712633,0.000099972705,0.9896881,0.00004497285,0.0008956597,0.00030188242],"study_design_scores_gemma":[0.00065459765,0.00018857613,0.0070633143,0.000007698527,0.000016096245,0.000021050135,0.00008419223,0.000023560866,0.9624643,0.00005176254,0.029318906,0.000105979576],"about_ca_topic_score_codex":0.000041667277,"about_ca_topic_score_gemma":0.000066005836,"teacher_disagreement_score":0.028423246,"about_ca_system_score_codex":0.000031260963,"about_ca_system_score_gemma":0.000102568636,"threshold_uncertainty_score":0.37247717},"labels":[],"label_agreement":null},{"id":"W4229000062","doi":"10.1111/febs.15794","title":"Structural biology of the invasion arsenal of Gram‐negative bacterial pathogens","year":2021,"lang":"en","type":"review","venue":"FEBS Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Effector; Biology; Secretion; Function (biology); Computational biology; Cell biology; Virulence; Structural biology; Genetics; Gene; Biochemistry","score_opus":0.030395230692090987,"score_gpt":0.29049603024315945,"score_spread":0.26010079955106846,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4229000062","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08960463,0.90764314,0.00001877041,0.000029776109,0.002091934,0.00023267961,0.0003362786,0.0000022754923,0.000040534513],"genre_scores_gemma":[0.011121614,0.98705983,0.00057822926,0.000012391072,0.00093261077,0.000004114377,0.00021529566,0.000030191552,0.000045717683],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980616,0.00044099157,0.00081129663,0.00030489586,0.00012224213,0.0002589633],"domain_scores_gemma":[0.99801254,0.000026099708,0.0011945049,0.0004671718,0.00023741284,0.00006227652],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002217867,0.0003089187,0.0010648763,0.00008332348,0.000087557266,0.000020640206,0.00061606645,0.00093307596,0.0001023562],"category_scores_gemma":[0.00023370446,0.00018449604,0.0008087817,0.00018327078,0.00033137822,0.0000017824888,0.0004909258,0.00048179354,0.0000010620086],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004558532,0.00004255836,0.000050410927,0.0006377718,0.00055034226,0.000007949246,0.00001993133,9.579612e-7,0.43863538,0.00015501809,0.00034289714,0.5595112],"study_design_scores_gemma":[0.00046103986,0.0005775485,0.0000815883,0.001964584,0.00047176232,0.0012345278,0.00002174397,5.5501346e-7,0.09971808,0.00025857467,0.8948761,0.0003338813],"about_ca_topic_score_codex":0.0000054451916,"about_ca_topic_score_gemma":0.000015203912,"teacher_disagreement_score":0.8945332,"about_ca_system_score_codex":0.000019924657,"about_ca_system_score_gemma":0.0006152238,"threshold_uncertainty_score":0.752353},"labels":[],"label_agreement":null},{"id":"W4229830947","doi":"10.1016/s0378-1097(00)00170-1","title":"Multicopy suppression of a gacA mutation by the infC operon in Pseudomonas fluorescens CHA0: competition with the global translational regulator RsmA","year":2000,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Infrastructure Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Operon; Pseudomonas fluorescens; Biology; Regulator; Repressor; Gene; Genetics; Mutant; Gene expression; Bacteria","score_opus":0.0031137802287383312,"score_gpt":0.19521041905277967,"score_spread":0.19209663882404132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4229830947","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9867909,0.00024506246,0.00020501824,0.012149656,0.00007790738,0.00030539092,0.00017852067,0.000007678834,0.000039890987],"genre_scores_gemma":[0.99749434,0.00005968382,0.00030254177,0.0012136623,0.0000697513,0.000020222971,0.0007913339,0.000010724137,0.00003775415],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909496,0.0001417884,0.00021398182,0.00027923964,0.000047200243,0.00022284829],"domain_scores_gemma":[0.99959844,0.000014967224,0.00008616529,0.0002510445,0.000029526003,0.000019860532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012001624,0.0001536263,0.00014237221,0.00002108515,0.00007956188,0.000010669837,0.00024673625,0.00025268985,0.00006311728],"category_scores_gemma":[0.000004926686,0.0000906852,0.000048576956,0.00010544328,0.00048780898,0.0000036726651,0.000032390606,0.00012578146,0.00000677078],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037480428,0.00004648379,0.0011730363,0.0000044633543,0.00003096518,0.0000015607238,0.000060782266,0.00023211904,0.99391794,0.00003169019,0.0027423548,0.0013838095],"study_design_scores_gemma":[0.0017284383,0.00035581278,0.016060766,0.00002856424,0.000024089779,0.00015390631,0.000049933566,0.00008536186,0.93808764,0.000018005905,0.043198142,0.0002093416],"about_ca_topic_score_codex":0.000056400688,"about_ca_topic_score_gemma":0.00018317839,"teacher_disagreement_score":0.055830292,"about_ca_system_score_codex":0.00001559348,"about_ca_system_score_gemma":0.000027289187,"threshold_uncertainty_score":0.36980352},"labels":[],"label_agreement":null},{"id":"W4231388165","doi":"10.1002/9781119951438.eibc0670","title":"Siderophore‐Binding Periplasmatic Protein<scp>Fhu</scp><scp>D</scp>and Related Periplasmic Binding Proteins Involved in Bacterial Iron Uptake","year":2011,"lang":"en","type":"other","venue":"Encyclopedia of Inorganic and Bioinorganic Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Calgary","funders":"","keywords":"Periplasmic space; Siderophore; Bacterial outer membrane; ATP-binding cassette transporter; Biochemistry; Transporter; Ferric; Bacteria; Chemistry; Membrane transport protein; Binding protein; Membrane protein; Inner membrane; Biology; Membrane; Escherichia coli","score_opus":0.005622226468815698,"score_gpt":0.1869361513152889,"score_spread":0.1813139248464732,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4231388165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96335816,0.0028823458,0.0000038438707,0.000025240643,0.0004763826,0.0011116072,0.0002046887,0.000106723375,0.031831015],"genre_scores_gemma":[0.7710871,0.016121903,0.0015290043,0.000027925389,0.0010287606,0.00014026,0.001184164,0.000982496,0.2078984],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99618393,0.00008807566,0.0011058771,0.0014390341,0.00028004724,0.0009030055],"domain_scores_gemma":[0.99777335,0.000050279003,0.00096532126,0.00085188675,0.000068667185,0.0002905143],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000276824,0.0010341405,0.001074154,0.00025520305,0.00013273668,0.00006938738,0.00065853505,0.0029398655,0.00050032884],"category_scores_gemma":[0.0007333135,0.0010198801,0.00016384102,0.0004030219,0.0007254587,0.000013632439,0.00083214307,0.00083895976,0.000042486205],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001905178,0.00015263572,0.0010322904,0.0009927074,0.00017149495,0.000024229259,0.0004305905,5.0786742e-8,0.99166644,0.0000074878735,0.0052271322,0.00027591566],"study_design_scores_gemma":[0.0020214482,0.00043839557,0.0005892848,0.0006782566,0.0001628218,0.0001563681,0.0014990974,0.0000038212443,0.89820486,0.000046502853,0.09573587,0.00046328595],"about_ca_topic_score_codex":0.0001190486,"about_ca_topic_score_gemma":0.00018674239,"teacher_disagreement_score":0.19227107,"about_ca_system_score_codex":0.00007780742,"about_ca_system_score_gemma":0.0004376111,"threshold_uncertainty_score":0.99922514},"labels":[],"label_agreement":null},{"id":"W4233020651","doi":"10.3410/f.12662957.13913055","title":"Faculty Opinions recommendation of In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements.","year":2011,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Regulon; RNA polymerase; Computational biology; Transcription (linguistics); Profiling (computer programming); Promoter; Biology; Consensus sequence; Polymerase; Genetics; Molecular biology; RNA; Transcription factor; Gene; Computer science; Base sequence; Gene expression","score_opus":0.04066972730033173,"score_gpt":0.3074169052533177,"score_spread":0.26674717795298597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4233020651","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0072261062,0.00085374824,0.000018791101,0.010994678,0.0006127327,0.0013988875,0.97888327,0.0000037169818,0.000008054838],"genre_scores_gemma":[0.02790234,0.0012212286,0.0004982279,0.000106811414,0.00007959872,0.000072583185,0.9700687,0.00001522261,0.000035319234],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964971,0.0004831492,0.0018918184,0.000436745,0.0005114185,0.0001797941],"domain_scores_gemma":[0.9942025,0.000021624748,0.0026893723,0.0011726912,0.0018646888,0.00004912917],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001060228,0.00028453028,0.0005912959,0.00018328663,0.00007057515,0.000018541115,0.001000955,0.0007267256,0.000047586687],"category_scores_gemma":[0.00081941317,0.00017336628,0.0003223236,0.000845513,0.00064664084,0.000030206927,0.00031489134,0.00037637248,3.681148e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013857557,0.0003748319,0.000018726998,0.0038754565,0.00009139852,2.1569686e-8,0.00012779907,4.933949e-8,0.8122321,0.00016868801,0.18078035,0.002192039],"study_design_scores_gemma":[0.0005624069,0.00018318075,0.0026304617,0.002474037,0.00010431797,0.0000060001503,0.000035816218,0.0000021025573,0.5128645,0.00004374474,0.48095176,0.00014171249],"about_ca_topic_score_codex":0.000057797173,"about_ca_topic_score_gemma":0.000013838796,"teacher_disagreement_score":0.3001714,"about_ca_system_score_codex":0.000027751708,"about_ca_system_score_gemma":0.0002353115,"threshold_uncertainty_score":0.7069672},"labels":[],"label_agreement":null},{"id":"W4233764526","doi":"10.1111/j.1365-2958.2009.06652.x","title":"CtrA response regulator binding to the <i>Caulobacter</i> chromosome replication origin is required during nutrient and antibiotic stress as well as during cell cycle progression","year":2009,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Regulator; Genetics; Caulobacter crescentus; Chromosome; Cell cycle; Response regulator; Replication (statistics); DNA replication; Computational biology; Cell biology; Cell; Gene; Bacterial protein","score_opus":0.003423876692619043,"score_gpt":0.23138439791920307,"score_spread":0.22796052122658403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4233764526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99471134,0.00086442416,0.00003065355,0.003319933,0.00016553389,0.00071004377,0.00006181206,0.000046321325,0.000089930225],"genre_scores_gemma":[0.997632,0.00027458963,0.00036995063,0.0008653076,0.00012212188,0.000015223418,0.00015070128,0.000037243077,0.00053282006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977242,0.00021055645,0.0003668994,0.0010488166,0.00007831593,0.0005712375],"domain_scores_gemma":[0.99847424,0.000008967141,0.0001886803,0.0011156927,0.00007383665,0.00013855782],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00026530662,0.00032806623,0.0002665212,0.00012520558,0.00026214521,0.00006643596,0.00042565237,0.00053624227,0.000022216023],"category_scores_gemma":[0.000063259766,0.00027191223,0.000099629084,0.00023515856,0.00014972746,0.000006505832,0.00033070002,0.00018696948,0.00010546237],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009512254,0.00010221123,0.000183815,0.000026163703,0.000028219356,0.000036797424,0.000060102615,0.000008321997,0.9981042,0.00001959139,0.00017495215,0.0003043694],"study_design_scores_gemma":[0.0008402084,0.0010094324,0.0027530633,0.00006028592,0.000026366133,0.00038144196,0.000032507112,0.0000023961,0.9707353,0.000031826654,0.023793451,0.00033368418],"about_ca_topic_score_codex":0.000006609032,"about_ca_topic_score_gemma":0.000002787151,"teacher_disagreement_score":0.027368894,"about_ca_system_score_codex":0.000049328348,"about_ca_system_score_gemma":0.00006083523,"threshold_uncertainty_score":0.9999733},"labels":[],"label_agreement":null},{"id":"W4234505561","doi":"10.1111/j.1758-2229.2012.00387.x","title":"Wzx flippase-mediated membrane translocation of sugar polymer precursors in bacteria.","year":2012,"lang":"en","type":"article","venue":"Environmental Microbiology Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Bacteria; Sugar; Chromosomal translocation; Chemistry; Cell biology; Flippase; Membrane; Biochemistry; Biology; Computational biology; Microbiology; Gene; Genetics; Phospholipid; Phosphatidylserine","score_opus":0.003515392989997404,"score_gpt":0.18322300438107453,"score_spread":0.17970761139107713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4234505561","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967392,0.0023725445,0.000014907191,0.0000894882,0.00043008223,0.00022156656,0.00007125468,0.000008366838,0.000052571755],"genre_scores_gemma":[0.9974473,0.0005424934,0.00023552212,0.0000895779,0.00009560283,0.000018485473,0.0014023422,0.000022416152,0.00014625664],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99875224,0.000077225166,0.0004572219,0.000330152,0.00003460165,0.00034856203],"domain_scores_gemma":[0.9993717,0.0000073100537,0.00020884475,0.00034534882,0.0000043968003,0.00006239138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020057955,0.0001829873,0.00023488747,0.000069703536,0.000023279648,0.000002521279,0.00010148018,0.00047461144,0.00018907407],"category_scores_gemma":[0.000015276333,0.00017741502,0.000072181145,0.000059328537,0.0002589079,0.0000053333247,0.00008497604,0.00009966287,0.000013610287],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006360199,0.00023046583,0.03754142,0.0000073772726,0.00003498397,0.0000055930614,0.00005427743,0.0000020845052,0.9614498,0.000002727659,0.00004991262,0.00055778027],"study_design_scores_gemma":[0.00033225585,0.00016258706,0.02386644,0.000007729969,0.0000130505205,0.00035214363,0.000035728288,3.5423645e-7,0.96530473,0.000002789269,0.009743395,0.00017881015],"about_ca_topic_score_codex":0.000019733583,"about_ca_topic_score_gemma":0.000017901146,"teacher_disagreement_score":0.013674978,"about_ca_system_score_codex":0.000021727417,"about_ca_system_score_gemma":0.000019562134,"threshold_uncertainty_score":0.7234774},"labels":[],"label_agreement":null},{"id":"W4235325029","doi":"10.1128/jb.184.9.2567-2567.2002","title":"Glucose-Resistant Sporulation in <i>Bacillus subtilis crsA47</i> Mutants Does Not Depend on Promoter Switching at the <i>spo0A</i> Gene","year":2002,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Bacillus subtilis; Biology; Mutant; Gene; Spore; Microbiology; Genetics; Mutation; Cell biology; Bacteria","score_opus":0.0113597233347461,"score_gpt":0.21701780113264754,"score_spread":0.20565807779790143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4235325029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996151,0.00065960025,0.00004142912,0.0020502731,0.00075222127,0.00017761589,0.000036950532,0.0000057595576,0.0001252093],"genre_scores_gemma":[0.9973892,0.001064061,0.00022089439,0.00063354825,0.00047139343,0.0000049121722,0.00001721874,0.000027291408,0.00017148883],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982351,0.00018184754,0.0007136391,0.00033253795,0.00015804495,0.00037885347],"domain_scores_gemma":[0.9988546,0.00003595259,0.0005247507,0.00040539695,0.00010099379,0.00007830445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004745474,0.00024443894,0.0003710298,0.00012298285,0.00010633338,0.000031377498,0.00038595428,0.00045393308,0.00013048317],"category_scores_gemma":[0.00009750792,0.00014599597,0.00015953422,0.000106928026,0.00010891997,0.000009005249,0.00014592893,0.00034785038,0.00001621649],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00088958733,0.00009580423,0.0012261603,0.000007415021,0.000051368377,0.000056708166,0.00006389054,0.000036182653,0.9902021,0.000010165304,0.00009202639,0.007268558],"study_design_scores_gemma":[0.0010962732,0.0012185107,0.017780129,0.000025512054,0.000025721396,0.00042599387,0.000023948682,0.000042175587,0.94478595,0.000057723246,0.034308758,0.00020927392],"about_ca_topic_score_codex":0.000019012261,"about_ca_topic_score_gemma":0.0003660949,"teacher_disagreement_score":0.04541615,"about_ca_system_score_codex":0.00006575454,"about_ca_system_score_gemma":0.000034777415,"threshold_uncertainty_score":0.5953543},"labels":[],"label_agreement":null},{"id":"W4236000868","doi":"10.1007/s00792-002-0281-8","title":"Donn J. Kushner, 1927–2001","year":2002,"lang":"en","type":"article","venue":"Extremophiles","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; Faculty of Education, Victoria University of Wellington; University of Ottawa","keywords":"Microbial ecology; Astrobiology; Philosophy; Geography; Geology; Biology; Paleontology","score_opus":0.0207514564382898,"score_gpt":0.22024057279829243,"score_spread":0.19948911636000263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4236000868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9808135,0.0031243633,0.00011147904,0.0028258667,0.00056944636,0.00013833072,0.000025651725,0.000058415077,0.012332927],"genre_scores_gemma":[0.9900372,0.0019136906,0.0010702033,0.00061062,0.00087898015,0.000009461287,0.000049512764,0.00002707561,0.0054032635],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99906075,0.000026034377,0.00016295441,0.00034708448,0.00008232904,0.0003208641],"domain_scores_gemma":[0.9993938,0.0000043400505,0.00005203405,0.0004326714,0.00003587155,0.000081287995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006264433,0.00016015783,0.00012692416,0.000047169942,0.00007464354,0.000025414705,0.00025187375,0.00028612,0.0005036522],"category_scores_gemma":[0.00003788026,0.00014597875,0.000082007304,0.000091338894,0.00011256422,0.0000017273563,0.00013397406,0.00008680302,0.00017653077],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012985989,0.000068101785,0.00027642414,0.0000044475405,0.00002295543,0.000007091295,0.00001051967,0.000003181518,0.9221083,0.0001647559,0.057573732,0.019747507],"study_design_scores_gemma":[0.00033844795,0.0001944967,0.000768073,0.000005659804,0.000009644121,0.00004784739,0.000012091833,0.00008471191,0.2141322,0.0002679102,0.78390497,0.00023391617],"about_ca_topic_score_codex":0.000011181286,"about_ca_topic_score_gemma":0.00002307521,"teacher_disagreement_score":0.72633123,"about_ca_system_score_codex":0.0000064015862,"about_ca_system_score_gemma":0.000010414114,"threshold_uncertainty_score":0.59528404},"labels":[],"label_agreement":null},{"id":"W4237986926","doi":"10.3410/f.737529884.793575443","title":"Faculty Opinions recommendation of Structural Coordination of Polymerization and Crosslinking by a SEDS-bPBP Peptidoglycan Synthase Complex.","year":2020,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; National Institutes of Health; Howard Hughes Medical Institute","keywords":"Peptidoglycan; Thermus thermophilus; Transmembrane domain; Chemistry; Glycan; Cell wall; Biochemistry; Membrane; Glycoprotein","score_opus":0.019676777575347092,"score_gpt":0.32280677538843966,"score_spread":0.3031299978130926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4237986926","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009587242,0.00086869986,0.00008494546,0.06828392,0.00032092875,0.0006910855,0.9296388,0.000010515377,0.000005209586],"genre_scores_gemma":[0.002468286,0.0003880621,0.00059196894,0.0012117773,0.00017566755,0.00004099657,0.99502605,0.000020127558,0.000077081626],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99750006,0.00021544387,0.001063562,0.00053495215,0.00047960586,0.00020635183],"domain_scores_gemma":[0.99561024,0.000025278,0.0014172458,0.0006531688,0.0021560055,0.00013807353],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00034701248,0.00035295298,0.00061698764,0.00013970285,0.00013602983,0.0000620481,0.00072399987,0.0007871197,0.00006272596],"category_scores_gemma":[0.0019336115,0.00026026389,0.00024042491,0.0007329282,0.00046457796,0.000021043688,0.00048548295,0.0003755967,0.0000017270222],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002991869,0.00008435881,0.000010117187,0.002737804,0.000104662045,4.7776183e-8,0.000030867595,7.58407e-8,0.012080986,0.00007298697,0.98236865,0.002479517],"study_design_scores_gemma":[0.000580561,0.00031108252,0.0008078202,0.001492197,0.00010847214,0.000017267463,0.000018852696,0.000023386863,0.0057597314,0.000010861936,0.99063057,0.0002391803],"about_ca_topic_score_codex":0.0000441974,"about_ca_topic_score_gemma":0.0000056698823,"teacher_disagreement_score":0.067072146,"about_ca_system_score_codex":0.00002310595,"about_ca_system_score_gemma":0.00022522233,"threshold_uncertainty_score":0.999985},"labels":[],"label_agreement":null},{"id":"W4239907484","doi":"10.12688/f1000research.8007.1","title":"Alanylated lipoteichoic acid primer in Bacillus subtilis","year":2016,"lang":"en","type":"preprint","venue":"F1000Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Saskatchewan Health Research Foundation; University of Saskatchewan","keywords":"Lipoteichoic acid; Bacillus subtilis; Glycolipid; Teichoic acid; Biology; Biochemistry; Biosynthesis; Bacteria; Microbiology; Chemistry; Cell wall; Staphylococcus aureus; Enzyme; Peptidoglycan; Genetics","score_opus":0.020979412630622335,"score_gpt":0.2960499229756195,"score_spread":0.2750705103449972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4239907484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902123,0.0034685282,0.0001402962,0.0017444463,0.0006690824,0.00078334834,0.00025056474,0.000050051047,0.0026813566],"genre_scores_gemma":[0.9914819,0.0028329212,0.00034003868,0.000091117705,0.00068931706,0.00013553539,0.000557102,0.00008763924,0.003784419],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99709177,0.00022921509,0.0004358174,0.0010670493,0.0003508664,0.0008252832],"domain_scores_gemma":[0.9981524,0.000018205761,0.00010870453,0.00133876,0.00021508106,0.00016689015],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005731003,0.00037923048,0.00039012826,0.00032732286,0.000055368993,0.00007075987,0.0011118831,0.0018614333,0.00029274035],"category_scores_gemma":[0.00024491994,0.0003162125,0.00015978693,0.0002021083,0.0003119038,0.0000021282035,0.0030869273,0.0008669539,0.0001694024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019396671,0.000080742364,0.0023960725,0.00005776297,0.00007551968,0.000025347894,0.000014218627,0.000005015413,0.97992855,0.000038950322,0.0033397581,0.013844069],"study_design_scores_gemma":[0.0008003176,0.00030936225,0.008593463,0.00010251665,0.0000107992655,0.000012124922,0.000008792784,0.000035504774,0.8537986,0.0010391343,0.13480191,0.00048747894],"about_ca_topic_score_codex":0.0001578939,"about_ca_topic_score_gemma":0.00022447528,"teacher_disagreement_score":0.13146214,"about_ca_system_score_codex":0.00007223142,"about_ca_system_score_gemma":0.00046375606,"threshold_uncertainty_score":0.999929},"labels":[],"label_agreement":null},{"id":"W4244015505","doi":"10.1139/w01-105","title":"Salicylate inhibits the translation and transcription of<i>ompF</i>in<i>Escherichia coli</i>","year":2001,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; National Institute for Health and Care Research","keywords":"Osmotic concentration; Transcription (linguistics); Messenger RNA; Escherichia coli; Sodium salicylate; Biology; Molecular biology; Porin; Bacterial outer membrane; Biochemistry; Chemistry; Gene","score_opus":0.01013433327425359,"score_gpt":0.19746686646897868,"score_spread":0.1873325331947251,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4244015505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99310064,0.0048279753,0.00010524038,0.0015457182,0.00022033637,0.000085511034,0.000023203693,8.0146356e-7,0.00009055985],"genre_scores_gemma":[0.99830997,0.0010172375,0.00021550691,0.00032147067,0.00008727009,8.5952524e-7,0.000015450887,0.000007789926,0.00002441812],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993208,0.00007591258,0.0002949136,0.000107576445,0.000015625887,0.00018515496],"domain_scores_gemma":[0.99962735,0.000007683169,0.00012488,0.00009752689,0.000066133434,0.00007644535],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022305577,0.000087288005,0.0001566548,0.00009894587,0.000036558766,0.000007724968,0.00013840038,0.00024530312,0.000011701341],"category_scores_gemma":[0.000016247202,0.000067238085,0.000053460033,0.00010426661,0.00021847941,0.0000029718606,0.000006626436,0.00013420019,5.718351e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006416076,0.0000069916223,0.0014735116,0.000004478024,0.00002014833,0.0000066955317,0.000092373266,0.000012354748,0.9942094,0.000034352917,0.00014380664,0.003931744],"study_design_scores_gemma":[0.0010743099,0.00063829194,0.006713196,0.000028409992,0.000029705001,0.0008726809,0.00009659792,0.0000072173743,0.738312,0.00013168932,0.25194943,0.00014647843],"about_ca_topic_score_codex":0.00037035873,"about_ca_topic_score_gemma":0.019015333,"teacher_disagreement_score":0.2558974,"about_ca_system_score_codex":0.000010317633,"about_ca_system_score_gemma":0.00021301753,"threshold_uncertainty_score":0.9988851},"labels":[],"label_agreement":null},{"id":"W4245033645","doi":"10.3410/f.1003631.37705","title":"Faculty Opinions recommendation of Analysis of ftsQ mutant alleles in Escherichia coli: complementation, septal localization, and recruitment of downstream cell division proteins.","year":2002,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Complementation; Downstream (manufacturing); Mutant; Escherichia coli; Cell division; Division (mathematics); Allele; Cell biology; Biology; Genetics; Cell; Gene; Engineering","score_opus":0.030517124753987934,"score_gpt":0.33151486633306754,"score_spread":0.3009977415790796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4245033645","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003686056,0.001179193,0.00017809168,0.009736304,0.00013343019,0.0015340704,0.9868567,0.0000044867234,0.0000091184365],"genre_scores_gemma":[0.0017241382,0.001846768,0.00096598075,0.000295391,0.00003584485,0.00013396663,0.9949313,0.000012225731,0.000054398028],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99701506,0.0002941,0.0015132362,0.00048821824,0.0005055813,0.00018383501],"domain_scores_gemma":[0.99502516,0.000024870713,0.0016147641,0.0007593356,0.002485492,0.000090382215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058514305,0.0003075414,0.000798738,0.00039265063,0.0000631231,0.000023861961,0.000585088,0.0006081745,0.00012349602],"category_scores_gemma":[0.00079666864,0.00022013173,0.0003317976,0.0019375695,0.0003232119,0.00001489244,0.00039054948,0.0002452074,7.766217e-7],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002519191,0.00071197754,0.00010337157,0.003334623,0.00049320236,7.5094604e-8,0.00007802949,0.0000037469445,0.0037910717,0.0000517958,0.9893164,0.002090515],"study_design_scores_gemma":[0.0006806069,0.00036938358,0.0034698937,0.0013975888,0.00040636343,0.0000016012384,0.00004053006,0.00005847214,0.0068998635,0.0000053009535,0.9864755,0.00019488846],"about_ca_topic_score_codex":0.000096399584,"about_ca_topic_score_gemma":0.00005882266,"teacher_disagreement_score":0.009440913,"about_ca_system_score_codex":0.000029802994,"about_ca_system_score_gemma":0.00016383237,"threshold_uncertainty_score":0.8976711},"labels":[],"label_agreement":null},{"id":"W4246003543","doi":"10.1186/preaccept-8043505361400198","title":"Tn5 transposition in Escherichia coli is repressed by Hfq and activated by over-expression of the small non-coding RNA SgrS","year":2014,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Transposase; Tn10; Biology; Transposition (logic); Transposable element; Transcription (linguistics); Transcription factor; Escherichia coli; Genetics; Insertion sequence; Gene; Molecular biology; Mutant","score_opus":0.003557657820379651,"score_gpt":0.19672935690795604,"score_spread":0.1931716990875764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4246003543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989615,0.00017382545,0.00024242338,0.00013211774,0.00007072874,0.000244702,0.000061447325,0.000006136598,0.00010710993],"genre_scores_gemma":[0.9992787,0.00023266667,0.00008854381,0.00017614171,0.00002639586,0.00003143605,0.000066147484,0.000013807668,0.00008612668],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992977,0.00005207876,0.00017096504,0.00027567544,0.000054443044,0.00014915488],"domain_scores_gemma":[0.9995696,0.000007927294,0.00009249193,0.00027986354,0.000020365986,0.00002974079],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008947334,0.00011512273,0.0001381615,0.000018276258,0.000042413933,0.0000110783685,0.00015364838,0.000295574,0.000011088323],"category_scores_gemma":[0.000012818085,0.00009053397,0.00004046301,0.00008028993,0.00008138442,0.0000023122054,0.000074394644,0.00009688651,3.1197382e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007314258,0.000057573565,0.00055363384,0.000018668,0.000007871977,1.0062812e-7,0.000044722903,0.0000043135387,0.99694043,0.0000023075065,0.0008937178,0.0014035024],"study_design_scores_gemma":[0.0005949311,0.00021487007,0.0030764076,0.000034758803,0.000008441725,4.8532024e-7,0.000016689313,0.000085108455,0.98696494,0.000017360655,0.008875952,0.000110033834],"about_ca_topic_score_codex":0.000063717176,"about_ca_topic_score_gemma":0.000013125806,"teacher_disagreement_score":0.009975484,"about_ca_system_score_codex":0.000006553502,"about_ca_system_score_gemma":0.0000111116115,"threshold_uncertainty_score":0.36918682},"labels":[],"label_agreement":null},{"id":"W4248493830","doi":"10.1016/b978-0-12-374984-0.00130-3","title":"Bacterial Transformation","year":2013,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"DNA; Bacteria; Pilus; Biology; Cell; Competence (human resources); Genetics; Exogenous DNA; Transformation (genetics); Eukaryotic cell; Cell biology; Gene; Escherichia coli; Psychology","score_opus":0.00822224098656562,"score_gpt":0.2065829248191029,"score_spread":0.19836068383253727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248493830","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006162569,0.00037473306,0.000009708137,0.000105701016,0.0007649706,0.00050361775,0.000081376784,0.000031282663,0.99196607],"genre_scores_gemma":[0.008809421,0.00050714385,0.0003169712,0.00020959256,0.0012257774,0.000036240646,0.0006695105,0.00008546296,0.98813987],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988568,0.000013852161,0.00035700222,0.00040179607,0.00011827805,0.00025231056],"domain_scores_gemma":[0.9991718,0.0000026176376,0.00016002142,0.0004987831,0.0000846549,0.000082140825],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0000752834,0.00035622888,0.00029576203,0.000068031855,0.000060497052,0.00004770627,0.00027230507,0.0011871203,0.0006562488],"category_scores_gemma":[0.0000054039992,0.00033347012,0.00019436727,0.000004992679,0.0001316436,0.0000016186438,0.00011165112,0.00022135,0.00036252948],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028164854,0.000004056634,1.5720565e-7,0.000023735527,0.00006689006,0.0000012222671,0.00001261659,7.9742435e-8,0.24636923,0.0016005902,0.0005245235,0.75136876],"study_design_scores_gemma":[0.00028331336,0.00024099858,0.000005370797,0.00003723951,0.00004550648,0.00001870949,0.0000015702634,8.352979e-7,0.05070678,0.0014534228,0.94683063,0.000375608],"about_ca_topic_score_codex":3.727469e-7,"about_ca_topic_score_gemma":0.000015001766,"teacher_disagreement_score":0.9463061,"about_ca_system_score_codex":0.000015714244,"about_ca_system_score_gemma":0.00008049747,"threshold_uncertainty_score":0.9999117},"labels":[],"label_agreement":null},{"id":"W4248679722","doi":"10.1038/npg.els.0000820","title":"<i>Escherichia coli</i> and the Development of Bacterial Genetics","year":2001,"lang":"en","type":"other","venue":"Encyclopedia of Life Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"","keywords":"Microbial genetics; Biology; Genetics; Molecular genetics; Escherichia coli; Bacterial genome size; Genome; Bacterial genetics; Computational biology; Gene","score_opus":0.009314465037982037,"score_gpt":0.23095343590291267,"score_spread":0.22163897086493065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248679722","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.72883904,0.012704854,0.00017099224,0.0002128841,0.0012428542,0.00053256645,0.00006340836,0.00001717106,0.25621626],"genre_scores_gemma":[0.19617866,0.30972096,0.16630849,0.0009377729,0.007172694,0.00017790149,0.0003530735,0.0007319996,0.31841844],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988974,0.000058761165,0.00036764244,0.0003155105,0.0001736595,0.00018704159],"domain_scores_gemma":[0.9992828,0.000015899886,0.00037020506,0.00024829456,0.000031764994,0.000051064893],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033541425,0.00018337462,0.00031966067,0.00006876937,0.000057936893,0.0000092834625,0.00047185266,0.00034502428,0.00017079752],"category_scores_gemma":[0.000061025356,0.00012137996,0.00005087602,0.00014658905,0.0015038342,9.673012e-7,0.0002035214,0.0000684417,0.000001986294],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040870102,0.00024271468,0.004751372,0.00033720746,0.00048074927,0.0000012323928,0.0008470839,0.0000063568655,0.771035,0.0005950561,0.18675604,0.03453846],"study_design_scores_gemma":[0.00057936093,0.00014977159,0.0002952733,0.000028395589,0.00002318089,0.0000011310551,0.000082977705,0.0000020685013,0.029421965,0.000030764684,0.96921194,0.00017317201],"about_ca_topic_score_codex":0.000038073234,"about_ca_topic_score_gemma":0.00024989765,"teacher_disagreement_score":0.7824559,"about_ca_system_score_codex":0.0000018982352,"about_ca_system_score_gemma":0.00033732288,"threshold_uncertainty_score":0.55409396},"labels":[],"label_agreement":null},{"id":"W4248869402","doi":"10.1016/s0378-1097(00)00315-3","title":"Expression of the tetA(C) tetracycline efflux pump in Escherichia coli confers osmotic sensitivity","year":2000,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Robarts Clinical Trials; Western University","funders":"Medical Research Council; Medical Research Council Canada; Cancer Research Society; ALS Association","keywords":"Tetracycline; Escherichia coli; Efflux; Osmotic shock; Aminoglycoside; Chemistry; Biochemistry; Biology; Microbiology; Antibiotics; Gene","score_opus":0.004996611449993473,"score_gpt":0.19701698449963453,"score_spread":0.19202037304964106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248869402","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99709135,0.000081366416,0.000033860942,0.002054082,0.0003305775,0.00025451585,0.000052834406,0.000009844025,0.000091582704],"genre_scores_gemma":[0.9971509,0.000078597215,0.00029247362,0.002085785,0.000103735896,0.000007359135,0.00008199157,0.00001853102,0.00018060995],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986736,0.00024102771,0.00031154256,0.0003982845,0.000035599216,0.0003399358],"domain_scores_gemma":[0.9993258,0.000023831482,0.000114143244,0.00047695788,0.00002588271,0.000033352433],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002075925,0.00020075642,0.0002615831,0.00004717426,0.000055924746,0.0000073253586,0.0002690709,0.0004431595,0.000090000685],"category_scores_gemma":[0.000044216496,0.00015113963,0.000115547075,0.00013596316,0.00048992236,0.0000023253137,0.00014138235,0.0002438864,0.000018447008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000871888,0.000072726194,0.005771669,0.000008599238,0.000021242275,0.0000037987638,0.000022172237,0.00010635502,0.99254876,0.0000027976373,0.0007274762,0.00062722614],"study_design_scores_gemma":[0.00064686086,0.0000985689,0.028166575,0.000024541787,0.000011499901,0.000031964108,0.0000115504245,0.000008388246,0.9543718,0.0000053048716,0.016454218,0.0001687228],"about_ca_topic_score_codex":0.00005603363,"about_ca_topic_score_gemma":0.000097624055,"teacher_disagreement_score":0.038176943,"about_ca_system_score_codex":0.000016247957,"about_ca_system_score_gemma":0.000040671493,"threshold_uncertainty_score":0.61632955},"labels":[],"label_agreement":null},{"id":"W4248974214","doi":"10.1002/ange.200604317","title":"Raftlike Polyvalent Inhibitors of the Anthrax Toxin: Modulating Inhibitory Potency by Formation of Lipid Microdomains","year":2007,"lang":"en","type":"article","venue":"Angewandte Chemie","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Potency; Chemistry; Peptide; Toxin; Inhibitory postsynaptic potential; Lipid A; Stereochemistry; Biochemistry; In vitro; Biology; Bacteria","score_opus":0.006346481145105919,"score_gpt":0.2144963002758418,"score_spread":0.20814981913073588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248974214","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99737424,0.000928446,0.0002657164,0.00019465918,0.00030430566,0.00015622849,0.000052396408,0.00000844319,0.000715563],"genre_scores_gemma":[0.9988514,0.00021337526,0.000341831,0.000081528175,0.00027143437,0.0000027506217,0.000062057814,0.000016271364,0.0001593159],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990226,0.000017305085,0.0004007715,0.00019974467,0.0001317999,0.0002277602],"domain_scores_gemma":[0.9992395,0.000008470108,0.00027940233,0.0003432624,0.00008923389,0.000040124443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002348237,0.00013925692,0.00016215211,0.000037375874,0.000056626577,0.000005211972,0.00021716228,0.00030314006,0.000007667619],"category_scores_gemma":[0.000047446385,0.00010985096,0.00012349275,0.00013309691,0.00019338024,0.0000048131024,0.00018879483,0.00009459581,6.1446787e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004002862,0.000060904396,0.00069783354,0.000043551612,0.000016503682,2.417326e-7,0.00006326924,0.0000017768092,0.9952517,0.0000081830785,0.0020964907,0.0017195195],"study_design_scores_gemma":[0.00038002667,0.00013278308,0.00062783895,0.00003666001,0.00001391033,0.0000075366775,0.00011173377,0.0000018964345,0.9867353,0.000019759147,0.0118101835,0.00012237608],"about_ca_topic_score_codex":0.000025480784,"about_ca_topic_score_gemma":0.0000243022,"teacher_disagreement_score":0.009713693,"about_ca_system_score_codex":0.00001799143,"about_ca_system_score_gemma":0.00003298603,"threshold_uncertainty_score":0.4479592},"labels":[],"label_agreement":null},{"id":"W4252267054","doi":"10.1111/j.1365-2958.2010.07020.x","title":"The permease gene<i>nagE2</i>is the key to N-acetylglucosamine sensing and utilization in<i>Streptomyces coelicolor</i>and is subject to multi-level control","year":2010,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Glycomics Centre","funders":"","keywords":"Permease; Streptomyces coelicolor; Biology; Actinorhodin; PEP group translocation; Biochemistry; Nutrient sensing; Mutant; Activator (genetics); Phosphotransferase; Gene; Phosphoenolpyruvate carboxykinase; Cell biology; Signal transduction","score_opus":0.011677299971762528,"score_gpt":0.23781631018392443,"score_spread":0.2261390102121619,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4252267054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.987818,0.0009902511,0.002999631,0.0071338047,0.00025082333,0.0006410795,0.00014047758,0.00001190902,0.000013998122],"genre_scores_gemma":[0.9883723,0.00030531175,0.002193018,0.008859506,0.00007333207,0.000024742014,0.000055638095,0.0000286392,0.000087515145],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99852824,0.0001320548,0.00026956864,0.0006001419,0.000041331692,0.0004286461],"domain_scores_gemma":[0.9991648,0.000034291523,0.00007509905,0.0005148143,0.000104905295,0.000106041414],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030716066,0.00025435135,0.00022096909,0.00006954951,0.00021275926,0.00007101056,0.0002743863,0.00040903877,0.0000055239134],"category_scores_gemma":[0.00016909358,0.00017591871,0.00005661634,0.00015304043,0.0003244578,0.000002229341,0.00034742992,0.00021771052,0.000008502545],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000114343646,0.000021854537,0.00056711835,0.0000043332907,0.000041570514,0.0000060355774,0.00018848342,0.0000028126547,0.98922235,0.000025899199,0.00032409563,0.00948109],"study_design_scores_gemma":[0.0008261779,0.00027785034,0.0035863938,0.0000054311145,0.000022451626,0.00013639742,0.00005099211,0.00009816661,0.87719274,0.000019202778,0.1175631,0.00022112994],"about_ca_topic_score_codex":0.00007644112,"about_ca_topic_score_gemma":0.001000841,"teacher_disagreement_score":0.117239,"about_ca_system_score_codex":0.000008427782,"about_ca_system_score_gemma":0.00004469569,"threshold_uncertainty_score":0.7173757},"labels":[],"label_agreement":null},{"id":"W4252598982","doi":"10.1016/s0167-4781(02)00455-4","title":"Transcription attenuation","year":2002,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; York University; National Institutes of Health; National Science Foundation","keywords":"Antitermination; Operon; Transcription (linguistics); Biology; Terminator (solar); RNA; Ribosome; Transfer RNA; Gene; Cell biology; Genetics; RNA polymerase; Escherichia coli","score_opus":0.01854671856115813,"score_gpt":0.2665789084897065,"score_spread":0.24803218992854836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4252598982","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23537737,0.76253635,0.000033610704,0.00014985468,0.00056464894,0.00066201977,0.0005697878,0.000049234197,0.000057110152],"genre_scores_gemma":[0.06336001,0.9313378,0.0007791939,0.00010922631,0.0010168996,0.00003913952,0.0030904808,0.000097263895,0.00016998213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99756885,0.00019118233,0.0005534979,0.0010740759,0.0002013192,0.00041109332],"domain_scores_gemma":[0.99861425,0.000011869726,0.00042623706,0.0007447593,0.0000613331,0.00014157739],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00007738969,0.00072996033,0.0009287274,0.00015590755,0.00017374134,0.00010143703,0.0004139775,0.001548482,0.000035162662],"category_scores_gemma":[0.000017482647,0.0005644519,0.0003767066,0.00019270154,0.0001665803,0.000010240142,0.0002592821,0.00041483875,0.000009388015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027557824,0.00003321852,5.3960637e-8,0.0006751015,0.000089150635,0.000001251404,0.000028172839,1.5954949e-7,0.8605639,0.0000069897787,0.0011442101,0.13743025],"study_design_scores_gemma":[0.00022221633,0.00021496415,0.000011720552,0.0005767525,0.0002640517,0.00003836956,0.000004064155,0.0000022290808,0.60170764,0.00004674868,0.39642292,0.0004882936],"about_ca_topic_score_codex":0.0000048144,"about_ca_topic_score_gemma":0.0000028537147,"teacher_disagreement_score":0.39527872,"about_ca_system_score_codex":0.000020546353,"about_ca_system_score_gemma":0.00007719921,"threshold_uncertainty_score":0.9997477},"labels":[],"label_agreement":null},{"id":"W4255764041","doi":"10.1139/cjm-47-1-86","title":"Chemostat modeling of &lt;i&gt;Escherichia coli&lt;/i&gt; persistence in conventionalized mono-associated and streptomycin-treated mice","year":2001,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Persistence (discontinuity); Escherichia coli; Streptomycin; Chemostat; Microbiology; Biology; Chemistry; Bacteria; Genetics; Antibiotics; Gene","score_opus":0.010628164446289471,"score_gpt":0.2007564983830763,"score_spread":0.19012833393678683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4255764041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954176,0.003650877,0.00003914895,0.00039775655,0.00016438377,0.00011264114,0.000092692375,0.000002370702,0.00012256083],"genre_scores_gemma":[0.9982546,0.00093610055,0.0003393672,0.00014704668,0.00004529357,0.0000016586578,0.000106558175,0.000016000957,0.0001533786],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874157,0.00010868482,0.00051290105,0.00023987249,0.0000329947,0.00036398528],"domain_scores_gemma":[0.9990572,0.000013751002,0.00030840066,0.00014490857,0.00028759023,0.00018819579],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026739307,0.00017278852,0.00036972182,0.00020057368,0.000053884443,0.000012588875,0.0002420532,0.0004795416,0.00005348302],"category_scores_gemma":[0.000119753284,0.00017276384,0.00010630457,0.0001782455,0.0002572975,0.000004968778,0.000040773386,0.00016154961,0.0000012957772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012471466,0.000032785818,0.0053117555,0.0000077975565,0.000111112844,0.00003386375,0.000049303322,0.00013244791,0.9937153,0.000033866,0.00026100164,0.0001860626],"study_design_scores_gemma":[0.007720308,0.002120765,0.0131698055,0.0002469934,0.00020865303,0.0014632512,0.00033171874,0.0013006105,0.89678365,0.0002421745,0.07549971,0.0009123632],"about_ca_topic_score_codex":0.00041534388,"about_ca_topic_score_gemma":0.017775277,"teacher_disagreement_score":0.096931644,"about_ca_system_score_codex":0.00006766663,"about_ca_system_score_gemma":0.00053066225,"threshold_uncertainty_score":0.9919021},"labels":[],"label_agreement":null},{"id":"W4255847426","doi":"10.1128/jb.00876-12","title":"Loss of Elongation Factor P Disrupts Bacterial Outer Membrane Integrity","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Elongation; Bacterial outer membrane; Elongation factor; Membrane integrity; Structural integrity; Microbiology; Personal Integrity; Membrane; Cell biology; Biochemistry; Escherichia coli; Gene; RNA","score_opus":0.014570819564635103,"score_gpt":0.25974120049268695,"score_spread":0.24517038092805185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4255847426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967035,0.00021865836,0.0003827409,0.0002805222,0.0022283245,0.00008178008,0.00004720575,0.000003870579,0.000053383814],"genre_scores_gemma":[0.9965,0.0003280837,0.0014491074,0.00007287015,0.0015388309,0.0000016654444,0.000050066683,0.00001728114,0.0000420931],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986658,0.00015233827,0.0006413506,0.00014476458,0.00009611499,0.00029959957],"domain_scores_gemma":[0.9987537,0.000020882384,0.0006370146,0.00024632522,0.00022479595,0.00011723801],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033874225,0.00017379686,0.00040890794,0.000104856335,0.000028240176,0.000010659344,0.00028058252,0.00053546013,0.00016524774],"category_scores_gemma":[0.00015867244,0.0001356528,0.00018369625,0.00006489118,0.00019364177,0.000015307487,0.00012937789,0.00025442458,0.000005848875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048072662,0.00012439785,0.017239803,0.000018224513,0.00010486131,0.00000321747,0.000063756335,6.0835e-7,0.97920996,0.00006500991,0.00011743941,0.00257202],"study_design_scores_gemma":[0.0007662055,0.0010821826,0.10687453,0.000016356058,0.000035306995,0.00043712373,0.000026815942,0.0000011282685,0.8611866,0.000038508515,0.029377168,0.00015807555],"about_ca_topic_score_codex":0.000007789148,"about_ca_topic_score_gemma":0.000007530473,"teacher_disagreement_score":0.118023336,"about_ca_system_score_codex":0.000018250828,"about_ca_system_score_gemma":0.00008292697,"threshold_uncertainty_score":0.55317605},"labels":[],"label_agreement":null},{"id":"W4280626237","doi":"10.1099/mgen.0.000833","title":"RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12","year":2022,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; National Institutes of Health; Universidad Nacional Autónoma de México; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Operon; Throughput; Biology; Computational biology; Transcriptional regulation; Variety (cybernetics); Regulation of gene expression; Gene; Genomics; Set (abstract data type); Resource (disambiguation); Transcription (linguistics); Transcription factor; Escherichia coli; Data science; Computer science; Genetics; Genome; Computer network; Artificial intelligence","score_opus":0.011685533921671595,"score_gpt":0.21357973087286822,"score_spread":0.20189419695119662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280626237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99627036,0.0001483439,0.00015708532,0.0006748207,0.0006782533,0.0003179011,0.001689495,0.0000149228135,0.00004883947],"genre_scores_gemma":[0.9886139,0.00010820638,0.0019400255,0.0011860947,0.0002833714,0.00003160445,0.0075384234,0.0000364161,0.00026198305],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99868894,0.00011002215,0.00029585286,0.0005109487,0.00009881258,0.00029541153],"domain_scores_gemma":[0.99939877,0.000006510923,0.00010229325,0.00041998795,0.00002808536,0.00004433824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011604483,0.00019675193,0.00019338272,0.00008541186,0.00017323121,0.000024434408,0.00031406895,0.00020873961,0.00014315663],"category_scores_gemma":[0.00000644522,0.00023383337,0.00007108683,0.00012509864,0.00010128355,0.0000030756376,0.00027296643,0.00020991654,0.000013090559],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039414206,0.00014829522,0.00005359664,0.000007127857,0.000022753195,0.0000050424546,0.000039014445,0.0021640393,0.99001545,0.0006149273,0.0058973553,0.0006382347],"study_design_scores_gemma":[0.0011097471,0.00038618152,0.0059196916,0.0000031901943,0.000010492627,0.000017774013,0.000042682877,0.00004343146,0.41717342,0.00013292771,0.57491416,0.000246324],"about_ca_topic_score_codex":0.00011973723,"about_ca_topic_score_gemma":0.00035458663,"teacher_disagreement_score":0.57284206,"about_ca_system_score_codex":0.000110543406,"about_ca_system_score_gemma":0.00010740874,"threshold_uncertainty_score":0.9535448},"labels":[],"label_agreement":null},{"id":"W4281726691","doi":"10.3390/ijms23116055","title":"Transcription Factor SrsR (YgfI) Is a Novel Regulator for the Stress-Response Genes in Stationary Phase in Escherichia coli K-12","year":2022,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Ministry of Education, Culture, Sports, Science and Technology; Meiji University","keywords":"Escherichia coli; Biology; Gene; Regulator; Systematic evolution of ligands by exponential enrichment; Genome; DNA footprinting; Genetics; Transcription factor; Transcriptional regulation; Repressor lexA; DNA-binding protein; Repressor; RNA","score_opus":0.02169778761062198,"score_gpt":0.3006685215497445,"score_spread":0.27897073393912253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281726691","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9894638,0.0012549795,0.0042097545,0.0041102804,0.000587951,0.00016260848,0.0002050696,0.0000015280153,0.0000040267214],"genre_scores_gemma":[0.9974934,0.00019217626,0.001668122,0.00049007096,0.00008432385,0.00002381869,0.000012924554,0.000006851254,0.0000283075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890107,0.000085142296,0.00032747787,0.00018206316,0.00036380114,0.0001404542],"domain_scores_gemma":[0.99951684,0.000038260536,0.00020123394,0.00008899502,0.00012740029,0.000027286475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063139846,0.00008816778,0.00009898013,0.0001932368,0.00008032785,0.000044089884,0.0006648837,0.000058182282,0.000036192574],"category_scores_gemma":[0.00006263952,0.00007042308,0.00009411849,0.00015459539,0.0001331045,0.00001143541,0.00007419168,0.00011490772,1.6014255e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011826684,0.00022632173,0.00048385805,0.0000016327749,0.00003879189,0.000010511738,0.00018165898,0.0026862484,0.9913297,0.00009923241,0.000048109374,0.0037112178],"study_design_scores_gemma":[0.0037428027,0.0018254903,0.013899312,0.000017617493,0.000013172161,0.000072263276,0.0008878507,0.0027481962,0.94003546,0.0003419468,0.03623266,0.00018324428],"about_ca_topic_score_codex":0.000018051442,"about_ca_topic_score_gemma":0.000039127703,"teacher_disagreement_score":0.051294304,"about_ca_system_score_codex":0.000044085937,"about_ca_system_score_gemma":0.0002394464,"threshold_uncertainty_score":0.28717697},"labels":[],"label_agreement":null},{"id":"W4281770506","doi":"10.1016/j.celrep.2022.110888","title":"Caulobacter lipid A is conditionally dispensable in the absence of fur and in the presence of anionic sphingolipids","year":2022,"lang":"en","type":"article","venue":"Cell Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Lawrence Berkeley National Laboratory; National Institute of General Medical Sciences; European Regional Development Fund; National Institute of Allergy and Infectious Diseases; Fundacja na rzecz Nauki Polskiej; European Commission; Laboratory Directed Research and Development; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Sphingolipid; Lipid A; Caulobacter crescentus; Ceramide; Lipid II; Biochemistry; Biology; Cell biology; Lipidome; Response regulator; Lipopolysaccharide; Bacterial outer membrane; Chemistry; Lipid metabolism; Biosynthesis; Gene; Escherichia coli; Mutant","score_opus":0.007317111912895464,"score_gpt":0.21960365047505465,"score_spread":0.21228653856215918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281770506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983022,0.00030941394,0.0000030397755,0.00037644777,0.00008492873,0.00016762623,0.000017489077,9.5183134e-7,0.00073790347],"genre_scores_gemma":[0.9993982,0.00015845077,0.00003663355,0.0002117356,0.000031274005,0.00002362019,0.000030415082,0.0000040062873,0.00010566834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992537,0.00007192598,0.00024887046,0.00019049953,0.0001235471,0.000111438676],"domain_scores_gemma":[0.9994485,0.000019539208,0.00015772475,0.000341193,0.000023522316,0.000009555095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042662394,0.00006422924,0.00009614679,0.000027630278,0.000034658555,0.000006600444,0.00018679658,0.00006201098,0.000039734987],"category_scores_gemma":[0.000031412375,0.000043761225,0.000029926887,0.00012048578,0.00011653333,0.0000018491852,0.00016063715,0.000104673076,1.3313864e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026525408,0.00010831719,0.015955627,0.000026238926,0.0000047203916,0.0000307466,0.00035358148,0.000032804463,0.98262644,0.00006709685,0.000664223,0.00010370374],"study_design_scores_gemma":[0.00047751743,0.0006203938,0.18359753,0.00002185423,0.000013922659,0.0006586915,0.0015071207,0.000041137137,0.72378784,0.0012146761,0.08783589,0.00022340636],"about_ca_topic_score_codex":0.00008806711,"about_ca_topic_score_gemma":0.00008529774,"teacher_disagreement_score":0.25883856,"about_ca_system_score_codex":0.000004521945,"about_ca_system_score_gemma":0.000056917863,"threshold_uncertainty_score":0.17845309},"labels":[],"label_agreement":null},{"id":"W4281846681","doi":"10.3389/fmicb.2022.911114","title":"The Bacterial Flagellar Motor: Insights Into Torque Generation, Rotational Switching, and Mechanosensing","year":2022,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Flagellum; Motility; Stator; Cytoplasm; Molecular motor; Biology; Biophysics; Cell biology; Bacteria; Physics; Genetics","score_opus":0.010930818599856153,"score_gpt":0.2363283290102754,"score_spread":0.22539751041041925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281846681","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010278359,0.9838845,0.00048807115,0.000057010922,0.004613702,0.00059909705,0.000050832823,0.000011272837,0.000017120652],"genre_scores_gemma":[0.00024823638,0.9934622,0.0030146386,0.00007931935,0.0008291407,0.00008648428,0.0020998863,0.000050568902,0.00012949757],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978041,0.0005081816,0.00057716994,0.0007172318,0.00004719894,0.00034608686],"domain_scores_gemma":[0.9991598,0.000033151417,0.0002968288,0.00042999777,0.000034133453,0.000046056666],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029985383,0.0003917027,0.0007071974,0.0001709854,0.00037494447,0.00006204672,0.00042717002,0.0009510669,0.000016929487],"category_scores_gemma":[0.00009421784,0.00030267026,0.00016442755,0.00013166537,0.0002162976,0.0000028571922,0.000514555,0.000415434,0.0000025251431],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036102974,0.00002089886,0.0000032591754,0.00018756982,0.00018015444,0.0000067999035,0.00004567923,7.961694e-7,0.61347437,0.00007537195,0.005656227,0.38031274],"study_design_scores_gemma":[0.00022409082,0.00018798033,9.293617e-7,0.000063692954,0.000070488844,0.0000909451,0.000028787394,0.000011080346,0.0048623504,0.000156838,0.9939663,0.00033651546],"about_ca_topic_score_codex":0.00001526637,"about_ca_topic_score_gemma":0.00017456434,"teacher_disagreement_score":0.9883101,"about_ca_system_score_codex":0.00009284759,"about_ca_system_score_gemma":0.00026705625,"threshold_uncertainty_score":0.99994254},"labels":[],"label_agreement":null},{"id":"W4282974070","doi":"10.1099/mic.0.001198","title":"DNA damage-induced block of sporulation in Streptomyces venezuelae involves downregulation of ssgB","year":2022,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto","funders":"Biotechnology and Biological Sciences Research Council; Mitacs; Institute of Infection and Immunity; Canadian Institutes of Health Research; Royal Society","keywords":"Streptomyces; Biology; DNA damage; Cell division; Spore; Hypha; DNA; Cell biology; Microbiology; SOS response; DNA repair; Mitomycin C; Bacteria; Genetics; Cell","score_opus":0.007416464304205617,"score_gpt":0.214690095810611,"score_spread":0.20727363150640538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4282974070","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99926066,0.00018277102,0.0000069243124,0.00009808231,0.0001442245,0.00015568922,0.00009090995,0.0000056092945,0.000055129156],"genre_scores_gemma":[0.99907523,0.000026272837,0.0002318521,0.000030362453,0.000036407604,0.0000115571665,0.0005418771,0.000010163896,0.000036255722],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990847,0.00011437597,0.00034511028,0.00025870858,0.00003372424,0.00016335906],"domain_scores_gemma":[0.99943894,0.000008763738,0.00022440692,0.0002654823,0.000047730035,0.000014648158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018131391,0.000105870684,0.0002064335,0.0001345232,0.000034708755,0.0000018940161,0.00019988914,0.00021392472,0.00004971412],"category_scores_gemma":[0.000020140895,0.00011110068,0.00005837202,0.0001664083,0.00010240468,0.0000017001771,0.00025415362,0.00009268907,7.5279274e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009813102,0.0000897747,0.008636306,0.000014045284,0.000022388298,6.537998e-7,0.000047150006,0.00031487204,0.9899995,0.00009873723,0.00005345354,0.0006250081],"study_design_scores_gemma":[0.0005000237,0.0005608025,0.053474788,0.000004848162,0.000008288907,0.000011624858,0.000097771015,0.000020920546,0.94088984,0.000074762946,0.004249953,0.00010638324],"about_ca_topic_score_codex":0.000060585233,"about_ca_topic_score_gemma":0.00011543242,"teacher_disagreement_score":0.049109645,"about_ca_system_score_codex":0.000016591406,"about_ca_system_score_gemma":0.00005739591,"threshold_uncertainty_score":0.4530554},"labels":[],"label_agreement":null},{"id":"W4283359651","doi":"10.1038/s41467-022-31173-y","title":"RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression","year":2022,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Biotechnology and Biological Sciences Research Council; Medical Research Council; Directorate for Biological Sciences; Agence Nationale de la Recherche; National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; University of Edinburgh; Wellcome Trust","keywords":"RNase P; Transfer RNA; Expression (computer science); Toxin; Cell biology; Computational biology; Biology; Chemistry; Gene; Computer science; Genetics; RNA","score_opus":0.008255996117938723,"score_gpt":0.256074785463966,"score_spread":0.24781878934602727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283359651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9860465,0.010037343,0.00020234787,0.0024074127,0.00049393944,0.00031102326,0.00004422529,0.00002795283,0.00042924364],"genre_scores_gemma":[0.9945864,0.00097141333,0.0025315883,0.0011536368,0.00011084885,0.000112020556,0.00034859192,0.000022076461,0.00016343789],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99902207,0.00009935255,0.00023184018,0.0002966449,0.00012083528,0.00022926222],"domain_scores_gemma":[0.99811107,0.000022541417,0.00008868239,0.001652274,0.000056063498,0.00006936341],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029686478,0.000133492,0.0001508755,0.00010873464,0.00030660394,0.000018886454,0.0011355566,0.0004210517,0.000023531593],"category_scores_gemma":[0.000055132004,0.00014275279,0.000066081055,0.0003363239,0.00006931543,0.0000031507502,0.0018909487,0.00089967035,0.0000018979742],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007856779,0.00010935673,0.00045217382,0.0000015239375,0.00001689993,0.0000010411093,0.00004107205,0.008943413,0.9814317,0.0010983706,0.0069026784,0.0009231773],"study_design_scores_gemma":[0.000762022,0.00011068757,0.0033779815,0.000012767524,0.000018080653,0.000005824558,0.00022559786,0.0015780398,0.17675543,0.000085279346,0.81675375,0.0003145428],"about_ca_topic_score_codex":0.000023642426,"about_ca_topic_score_gemma":0.00039836834,"teacher_disagreement_score":0.80985105,"about_ca_system_score_codex":0.0000494102,"about_ca_system_score_gemma":0.00007547593,"threshold_uncertainty_score":0.582129},"labels":[],"label_agreement":null},{"id":"W4283711965","doi":"10.1007/s00203-022-03064-9","title":"Insight rifampicin-resistant (rpoB) mutation in Pseudomonas stutzeri leads to enhance the biosynthesis of secondary metabolites to survive against harsh environments","year":2022,"lang":"en","type":"article","venue":"Archives of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Pseudomonas stutzeri; rpoB; Mutant; Nitrogen fixation; Assimilation (phonology); Biology; Microbiology; Food science; Biochemistry; Chemistry; Bacteria; Gene; Genetics","score_opus":0.004901002657200027,"score_gpt":0.21458397693680056,"score_spread":0.20968297427960053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283711965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970718,0.0008938923,0.00014258336,0.00063841423,0.00013217208,0.00038490724,0.0005310185,0.000003418565,0.000201795],"genre_scores_gemma":[0.9972364,0.0002746895,0.001473456,0.00056487776,0.000026359427,0.00005515803,0.00021764766,0.000016785138,0.00013463349],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985445,0.0003200682,0.00040594337,0.0004136085,0.000049303366,0.0002665423],"domain_scores_gemma":[0.99927884,0.000082636165,0.00017066428,0.00041560933,0.0000126785235,0.000039583443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020424557,0.00016695951,0.00030424853,0.00017424322,0.00007264203,0.0000035483026,0.00050898583,0.00009476176,0.000033245968],"category_scores_gemma":[0.000068371446,0.00014077671,0.00009009355,0.00016005023,0.00026994172,0.0000019141066,0.00066792057,0.00014191457,0.0000036896552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045956572,0.00012214696,0.0007754617,0.000011194482,0.00006141086,0.0000024034919,0.00048010735,0.00018056577,0.9894693,0.00006834882,0.000060362338,0.008309122],"study_design_scores_gemma":[0.0002376589,0.00068485644,0.014608028,0.000008233432,0.000012408856,0.0000062065174,0.00021661657,0.0000017290558,0.9422509,0.000059288446,0.041770544,0.00014350358],"about_ca_topic_score_codex":0.00006281088,"about_ca_topic_score_gemma":0.00023448878,"teacher_disagreement_score":0.047218382,"about_ca_system_score_codex":0.0000112136995,"about_ca_system_score_gemma":0.00005883171,"threshold_uncertainty_score":0.57407075},"labels":[],"label_agreement":null},{"id":"W4286852081","doi":"10.3791/4056-v","title":"Mapping Bacterial Functional Networks and Pathways in &lt;em&gt;Escherichia Coli&lt;/em&gt; using Synthetic Genetic Arrays","year":2012,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina; University of Toronto","funders":"","keywords":"Biology; Mutant; Genetics; Gene; Homologous recombination; Genome; Epistasis; Phenotype; Computational biology; Genetic screen","score_opus":0.02533122183570682,"score_gpt":0.300920423233466,"score_spread":0.2755892013977592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4286852081","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871722,0.005050449,0.005809759,0.000021155582,0.0017027466,0.00019252041,0.0000066930734,0.000008056913,0.00003641276],"genre_scores_gemma":[0.9908125,0.0006987127,0.006807601,0.00013237337,0.0014530641,0.000009823261,0.00001969131,0.000047088455,0.00001919397],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99793875,0.00018792336,0.00075832737,0.00030086836,0.00025607337,0.0005580633],"domain_scores_gemma":[0.9989073,0.00001601354,0.0004933511,0.00024081631,0.000117858595,0.00022463381],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00046162753,0.00031163637,0.0004528234,0.00018540777,0.00010747343,0.00007940093,0.00021576411,0.00048435823,0.00008917817],"category_scores_gemma":[0.00006386699,0.00029134873,0.00014414323,0.00017502403,0.000104209175,0.00002109334,0.00021345596,0.00022165584,0.0000027838844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004806514,0.0002701535,0.0013810454,0.0000123939735,0.00011673992,0.000009724476,0.0002532813,0.00012924036,0.99611986,0.00002435472,0.00012580176,0.0010767386],"study_design_scores_gemma":[0.0052068867,0.0010009959,0.026348751,0.00017142964,0.00008479174,0.0004249992,0.0005858631,0.0013169616,0.9461221,0.00005182602,0.017931662,0.0007536961],"about_ca_topic_score_codex":0.0000039150596,"about_ca_topic_score_gemma":0.000004623796,"teacher_disagreement_score":0.04999774,"about_ca_system_score_codex":0.00006869149,"about_ca_system_score_gemma":0.00010148245,"threshold_uncertainty_score":0.99995387},"labels":[],"label_agreement":null},{"id":"W4288041409","doi":"10.1093/pnasnexus/pgac134","title":"The role of cell-envelope synthesis for envelope growth and cytoplasmic density in <i>Bacillus subtilis</i>","year":2022,"lang":"en","type":"article","venue":"PNAS Nexus","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institutes of Health; European Research Council; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Horizon 2020 Framework Programme; Agence Nationale de la Recherche","keywords":"Bacillus subtilis; Cell envelope; Envelope (radar); Peptidoglycan; Cytoplasm; Cell biology; Intracellular; Biology; Biophysics; Cell growth; Chemistry; Biochemistry; Escherichia coli; Bacteria; Cell wall; Genetics; Gene","score_opus":0.004771289769370103,"score_gpt":0.1851580702194919,"score_spread":0.1803867804501218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4288041409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972536,0.0013635741,0.000037194764,0.00033017035,0.00013602484,0.0002426187,0.000070958056,0.000006276385,0.0005595999],"genre_scores_gemma":[0.9986643,0.00060077774,0.00036579455,0.00008824566,0.00004063472,0.00010260406,0.000022503473,0.000015701378,0.00009941698],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915105,0.000063180385,0.00019903514,0.00027643124,0.00007675425,0.00023356658],"domain_scores_gemma":[0.9995437,0.000061900384,0.000086951586,0.00023743697,0.00003683932,0.000033138447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023300662,0.00011715606,0.00015350214,0.00003676804,0.00018474674,0.000014362514,0.00025031233,0.00011695038,0.000005304646],"category_scores_gemma":[0.00010868757,0.00009917084,0.00004932493,0.00009887543,0.00011698418,0.0000015378878,0.00037489386,0.00009891203,5.6918464e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018814433,0.00004135939,0.0022889685,0.000014591298,0.000016162734,0.0000011570427,0.000043081163,0.0000057504913,0.99124587,0.00034373123,0.00009917827,0.0057119946],"study_design_scores_gemma":[0.00030801533,0.00021370969,0.0022486434,0.0000019856661,0.0000127995945,0.000013590636,0.00023663833,0.000040894658,0.94361365,0.0009774885,0.052208297,0.00012430035],"about_ca_topic_score_codex":0.000054749184,"about_ca_topic_score_gemma":0.00010695123,"teacher_disagreement_score":0.05210912,"about_ca_system_score_codex":0.00001191423,"about_ca_system_score_gemma":0.00006892518,"threshold_uncertainty_score":0.40440693},"labels":[],"label_agreement":null},{"id":"W4288695840","doi":"10.1101/2022.07.29.501992","title":"TraC of the conjugative plasmid pKM101 is secreted as a monomer in outer membrane vesicles and stimulates conjugation","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Université de Montréal","keywords":"TRAC; Pilus; Complementation; Plasmid; Secretion; Cell biology; Cell; Bacterial conjugation; Escherichia coli; Chemistry; Type VI secretion system; Bacterial outer membrane; Cell membrane; Bacteria; Vesicle; Biology; Membrane; DNA; Biochemistry; Phenotype; Genetics; Gene; Virulence","score_opus":0.008346892687515508,"score_gpt":0.21197994386442007,"score_spread":0.20363305117690456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4288695840","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971772,0.00089303456,0.00001486262,0.0005101658,0.0003710657,0.0006029501,0.00040043134,0.000021247839,0.000009074626],"genre_scores_gemma":[0.9984735,0.0005992563,0.0003819442,0.0002936789,0.000105003455,0.00008624297,0.0000024892424,0.000050177594,0.00000768131],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99830157,0.00014138733,0.00042955455,0.000691105,0.00016975538,0.00026662098],"domain_scores_gemma":[0.9986616,0.000021720152,0.00037041408,0.00071893755,0.0001615969,0.00006574522],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002630346,0.00032842386,0.00038064364,0.00011800336,0.00007751046,0.000042147534,0.00041053887,0.0006807001,0.000064783926],"category_scores_gemma":[0.00009753919,0.00029844133,0.000099922225,0.00021031927,0.00026707115,0.0000050778826,0.0008375411,0.00046248594,0.0000018567696],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010344699,0.00004733882,0.0051043234,0.00009410357,0.000118393385,0.0000037993027,0.000025809928,0.00006201842,0.9942868,0.00011490682,0.00003293157,0.0000061769647],"study_design_scores_gemma":[0.00063308363,0.00015157441,0.04471244,0.00006820084,0.00004835287,4.1737046e-8,0.000011492536,0.00017300081,0.9484656,0.000009547754,0.005400786,0.00032587867],"about_ca_topic_score_codex":0.000094825846,"about_ca_topic_score_gemma":0.000008656822,"teacher_disagreement_score":0.04582115,"about_ca_system_score_codex":0.000041144896,"about_ca_system_score_gemma":0.00026039776,"threshold_uncertainty_score":0.9999468},"labels":[],"label_agreement":null},{"id":"W4289549908","doi":"10.1128/mbio.01225-22","title":"Synthetic Genetic Interactions Reveal a Dense and Cryptic Regulatory Network of Small Noncoding RNAs in Escherichia coli","year":2022,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Canadian HIV Trials Network, Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Biology; Gene; Escherichia coli; Transfer RNA; Genetics; Phenotype; Regulation of gene expression; Gene expression; RNA","score_opus":0.009587925584844401,"score_gpt":0.21475189501014333,"score_spread":0.20516396942529894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289549908","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99806446,0.0010420325,0.00009348489,0.00017608152,0.00028587595,0.00016133836,0.0000106229245,0.000008148145,0.00015795729],"genre_scores_gemma":[0.99660724,0.00013096844,0.0027042516,0.00012441605,0.00010537604,0.0000366853,0.000014272141,0.000018365252,0.00025839632],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990709,0.00009625819,0.0002521586,0.00029478729,0.00006207794,0.00022382363],"domain_scores_gemma":[0.99952006,0.00001394898,0.0001053631,0.000290903,0.00002661599,0.000043118056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017077159,0.00011573417,0.00016714116,0.000048037633,0.00009145465,0.000010276254,0.00015371847,0.0001059964,0.000039474464],"category_scores_gemma":[0.00003155651,0.00012853112,0.00004761632,0.00015004401,0.00010313386,0.000001143702,0.000350009,0.00016638185,0.0000012782347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009024569,0.000061579405,0.003592676,0.000017241904,0.000025662872,0.000007812177,0.000043794167,0.00037717697,0.9925745,0.00008945467,0.00028043828,0.0028394093],"study_design_scores_gemma":[0.0025844777,0.0026336375,0.19544458,0.0001262081,0.00015096572,0.0003150984,0.00057396456,0.0016656414,0.6453277,0.001526601,0.14853029,0.0011208401],"about_ca_topic_score_codex":0.000045143388,"about_ca_topic_score_gemma":0.00013434011,"teacher_disagreement_score":0.34724683,"about_ca_system_score_codex":0.00002794232,"about_ca_system_score_gemma":0.00005950213,"threshold_uncertainty_score":0.52413464},"labels":[],"label_agreement":null},{"id":"W4289667118","doi":"10.1139/cjm-2022-0120","title":"A mutation in the putative CRP binding site of the <i>dctA</i> promoter of <i>Salmonella enterica</i> serovar Typhimurium enables growth with low orotate concentrations","year":2022,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Salmonella enterica; Mutant; Auxotrophy; Biology; Escherichia coli; Biochemistry; Wild type; Mutation; Molecular biology; Gene","score_opus":0.004038164176040235,"score_gpt":0.1772688885190998,"score_spread":0.17323072434305958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289667118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976056,0.00032054615,0.00004661216,0.0013129521,0.00015789409,0.0001973366,0.00032441213,5.894623e-7,0.000034014247],"genre_scores_gemma":[0.999337,0.000043690805,0.00016796053,0.00030937814,0.00003168416,0.0000063431025,0.000068873196,0.000008901594,0.000026160149],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907446,0.000233477,0.00032301137,0.00012621837,0.000044642577,0.00019820522],"domain_scores_gemma":[0.9992314,0.000021157533,0.0004000685,0.00014519079,0.00016235902,0.000039816627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028657043,0.000096600794,0.00017212082,0.000090235386,0.000094531824,0.000008015944,0.00033866477,0.000093869254,0.000017153041],"category_scores_gemma":[0.000035555422,0.000060883354,0.000066258996,0.00022472444,0.0003076889,0.000003503169,0.000038713457,0.00021149573,3.5059628e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007615065,0.00002953876,0.0038596396,0.000013180899,0.00004819109,0.000019431178,0.00063557964,0.00015378634,0.9947934,0.000041732274,0.00026426848,0.00006507746],"study_design_scores_gemma":[0.00077092944,0.0012603346,0.0019912496,0.000030172772,0.000037077883,0.0010747898,0.0009312697,0.000004895786,0.9882741,0.00009488251,0.005421471,0.00010882931],"about_ca_topic_score_codex":0.0004912859,"about_ca_topic_score_gemma":0.004766939,"teacher_disagreement_score":0.0065193255,"about_ca_system_score_codex":0.00003189799,"about_ca_system_score_gemma":0.00058157096,"threshold_uncertainty_score":0.2660064},"labels":[],"label_agreement":null},{"id":"W4290704140","doi":"10.1016/j.biochi.2022.07.018","title":"Evidence of an intracellular interaction between the Escherichia coli enzymes EntC and EntB and identification of a potential electrostatic channeling surface","year":2022,"lang":"en","type":"article","venue":"Biochimie","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"","keywords":"Enterobactin; Escherichia coli; Chemistry; Biochemistry; Siderophore; Gene","score_opus":0.013222710063991644,"score_gpt":0.24699216083829176,"score_spread":0.2337694507743001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4290704140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949718,0.0037832172,0.00063243136,0.00029275974,0.00010578417,0.00018045389,0.000028094211,0.000004233474,0.0000011998168],"genre_scores_gemma":[0.998783,0.000802281,0.00025314747,0.000020670504,0.000057729558,0.000008180419,0.00005061917,0.000008557108,0.00001580304],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923825,0.000117195734,0.0002349597,0.00021453598,0.00008989381,0.00010514208],"domain_scores_gemma":[0.9995195,0.000015677464,0.00020400267,0.00019279354,0.000043346987,0.000024648887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031890688,0.00008189707,0.00011136319,0.000029234841,0.00009878172,0.00001642355,0.00013627521,0.00006993472,0.0000063554935],"category_scores_gemma":[0.000040238618,0.00007137964,0.000025427506,0.00007989319,0.00011216956,0.000005336885,0.00017923367,0.00009016874,1.2538935e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009731367,0.000029945488,0.00041574953,0.000026610709,0.00003111254,2.5390997e-7,0.000078158286,0.000075995515,0.9974128,0.000033408316,0.0000112364305,0.0017873913],"study_design_scores_gemma":[0.00014840225,0.00066313474,0.004982244,0.000009938933,0.000042555876,0.00000767297,0.00023409844,0.0006520126,0.99292386,0.000071933115,0.00018948474,0.000074658514],"about_ca_topic_score_codex":0.00003643654,"about_ca_topic_score_gemma":0.0000059098566,"teacher_disagreement_score":0.0045664944,"about_ca_system_score_codex":0.0000062779563,"about_ca_system_score_gemma":0.000027545293,"threshold_uncertainty_score":0.29107773},"labels":[],"label_agreement":null},{"id":"W4292633434","doi":"10.1016/j.cub.2022.07.030","title":"Chromosome dynamics: Rearranging the choreography of a multipartite bacterial genome","year":2022,"lang":"en","type":"letter","venue":"Current Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Chromosome; Circular bacterial chromosome; Genetics; Multipartite; Genome; Computational biology; Bacterial artificial chromosome; Gene","score_opus":0.012162952861981205,"score_gpt":0.2429418008222138,"score_spread":0.2307788479602326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4292633434","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78279644,0.022557966,0.00034700675,0.16503529,0.018264735,0.0022231136,0.008152969,0.000117328476,0.0005051226],"genre_scores_gemma":[0.66728896,0.024316883,0.00069172215,0.10597856,0.04791767,0.0013504035,0.15071037,0.0006252339,0.0011201659],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99768966,0.00029989667,0.00052843813,0.0007569939,0.00012412804,0.0006008766],"domain_scores_gemma":[0.998405,0.000030026235,0.00045138915,0.0009888357,0.00008582536,0.00003896647],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023522662,0.00041936155,0.00051077025,0.0001959606,0.00015347965,0.000021236669,0.001053931,0.0011719312,0.000358819],"category_scores_gemma":[0.000050365798,0.00032047252,0.0003957654,0.00021970751,0.0006312688,0.0000015328538,0.0008181827,0.0011821933,0.000009113058],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014967656,0.00007987917,0.00035604704,0.00013831661,0.00035953097,0.000008720387,0.000034362118,0.0000035662015,0.9042259,0.00010663147,0.08637041,0.008166971],"study_design_scores_gemma":[0.00036876858,0.00061083876,0.00016692224,0.000014106125,0.00007242685,0.00002597265,0.000010292257,0.000013463066,0.0069822404,0.000097101845,0.9912713,0.00036656865],"about_ca_topic_score_codex":0.000028126395,"about_ca_topic_score_gemma":0.000022745922,"teacher_disagreement_score":0.9049009,"about_ca_system_score_codex":0.000035338107,"about_ca_system_score_gemma":0.000112981186,"threshold_uncertainty_score":0.9999247},"labels":[],"label_agreement":null},{"id":"W4293452270","doi":"10.1128/mbio.02137-22","title":"Dual Targeting Factors Are Required for LXG Toxin Export by the Bacterial Type VIIb Secretion System","year":2022,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Population Health Research Institute; McMaster University","funders":"Argonne National Laboratory; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Office of Science; Hospital for Sick Children; Government of Canada; Scheme for Promotion of Academic and Research Collaboration; U.S. Department of Energy","keywords":"Secretion; Microbiology; Toxin; Bacteria; Microbial toxins; Staphylococcus aureus; Streptococcus; Enterococcus; Biology; Bacterial protein; Biochemistry; Genetics; Antibiotics","score_opus":0.012665422887598771,"score_gpt":0.22005300556947666,"score_spread":0.20738758268187787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293452270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99676967,0.00030627998,0.00014425511,0.0003351908,0.0016484419,0.00035056373,0.00033598082,0.0000332631,0.0000763804],"genre_scores_gemma":[0.99714756,0.000020541154,0.00009861409,0.00008863825,0.00050841365,0.00007365025,0.0015688542,0.00002678115,0.00046695504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990279,0.000074017975,0.0002166949,0.00032326725,0.000103049075,0.0002550418],"domain_scores_gemma":[0.9994674,0.000009202378,0.0001572237,0.0002743082,0.000054422504,0.000037485486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024162939,0.00014319156,0.00014128478,0.000020258949,0.0003227428,0.00003275938,0.00022277614,0.00018610188,0.00005987737],"category_scores_gemma":[0.000048218048,0.00011401886,0.0000808216,0.00008077019,0.00005203601,0.0000019313056,0.00024336344,0.0000982545,0.0000026095363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016595254,0.000023966255,0.00031226437,0.000013893865,0.000030096986,0.0000010294885,0.000029760904,0.0000031599413,0.98469096,0.00004730983,0.014409237,0.0002723369],"study_design_scores_gemma":[0.00042444014,0.0006970387,0.00038103646,0.0000046510568,0.00002011686,0.00001435286,0.0009101713,0.000039457336,0.6284493,0.000011048853,0.36885872,0.00018966793],"about_ca_topic_score_codex":0.000019477784,"about_ca_topic_score_gemma":0.000007937034,"teacher_disagreement_score":0.3562417,"about_ca_system_score_codex":0.000038365204,"about_ca_system_score_gemma":0.00004555341,"threshold_uncertainty_score":0.46495542},"labels":[],"label_agreement":null},{"id":"W4294636674","doi":"10.1038/s41589-022-01119-y","title":"A genetic platform to investigate the functions of bacterial drug efflux pumps","year":2022,"lang":"en","type":"article","venue":"Nature Chemical Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Guelph","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Efflux; Escherichia coli; Biology; Strain (injury); Drug discovery; Chemistry; Biochemistry; Gene","score_opus":0.005534699971036432,"score_gpt":0.21879992185552058,"score_spread":0.21326522188448416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4294636674","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99566376,0.00053014077,0.00002930869,0.002034674,0.00100037,0.00026878947,0.0002449444,0.000018228973,0.00020975407],"genre_scores_gemma":[0.99659187,0.000034449447,0.0006225175,0.0014678921,0.000552898,0.00009566339,0.00042893772,0.000019741674,0.0001860282],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879616,0.00007214855,0.00027866932,0.0004378471,0.00009405105,0.00032109924],"domain_scores_gemma":[0.9992153,0.000030460234,0.00010502516,0.00049120066,0.00006642629,0.00009160201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016369326,0.00018040532,0.00021216611,0.000058298163,0.00013436201,0.000008600721,0.00062954816,0.0005063774,0.00020070575],"category_scores_gemma":[0.00016647679,0.00013426405,0.00011563459,0.0002435527,0.00027630603,0.0000010772783,0.00089470914,0.0005694018,0.000009496108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017833155,0.000045686273,0.0004067604,0.0000050899816,0.00004843134,5.961729e-7,0.000025524352,0.000011778987,0.990275,0.00026644184,0.006809503,0.0019268047],"study_design_scores_gemma":[0.00029737322,0.00030041882,0.00045761775,0.0000014164531,0.000017311168,0.000032195716,0.000033197033,0.0000044074054,0.6734601,0.00037713037,0.32488212,0.00013668672],"about_ca_topic_score_codex":0.000019140905,"about_ca_topic_score_gemma":0.00001630987,"teacher_disagreement_score":0.31807262,"about_ca_system_score_codex":0.00002347253,"about_ca_system_score_gemma":0.00009156527,"threshold_uncertainty_score":0.5475129},"labels":[],"label_agreement":null},{"id":"W4295027355","doi":"10.1002/pmic.202100254","title":"Integrated changes in thermal stability and proteome abundance during altered nutrient states in <i>Escherichia coli</i> and human cells","year":2022,"lang":"en","type":"article","venue":"PROTEOMICS","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"Mitacs; Canadian Cancer Society; Beatrice Hunter Cancer Research Institute; National Institutes of Health; National Institute of General Medical Sciences; Cancer Research Institute","keywords":"Escherichia coli; Proteome; Abundance (ecology); Nutrient; Biology; Proteomics; Cell biology; Chemistry; Computational biology; Biochemistry; Ecology; Gene","score_opus":0.008322953805850153,"score_gpt":0.20819727276151265,"score_spread":0.1998743189556625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4295027355","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983352,0.00025507412,0.0000130019,0.00025264593,0.000055906672,0.0009953291,0.00007203506,0.000010228159,0.000010599916],"genre_scores_gemma":[0.9984302,0.00019959426,0.00083256856,0.00006964095,0.000033052547,0.0003506212,0.000047336165,0.000017289847,0.000019717494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989962,0.000102063554,0.00019675528,0.00039136835,0.00005954944,0.00025405874],"domain_scores_gemma":[0.9996749,0.000003514138,0.0000752384,0.00018703505,0.000019728092,0.000039542367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024272969,0.00014560927,0.00016903013,0.00005917263,0.000096507,0.000025249954,0.0001299595,0.00011504427,0.000012576043],"category_scores_gemma":[0.000009890536,0.00014752457,0.000014102947,0.0001296163,0.00012070536,0.000002875081,0.00038543157,0.00024340983,1.5405475e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023230641,0.00009690573,0.007769272,0.000049587477,0.000006307159,0.0000033784308,0.00019015366,0.000019725554,0.9914772,0.000013060366,0.0000018386856,0.00014028756],"study_design_scores_gemma":[0.00091893284,0.00043597192,0.014076423,0.000009708791,0.0000021802934,0.00000473357,0.00019896234,0.00007331403,0.9831582,0.00013523444,0.0008114997,0.00017487607],"about_ca_topic_score_codex":0.00017056958,"about_ca_topic_score_gemma":0.00055715867,"teacher_disagreement_score":0.008319014,"about_ca_system_score_codex":0.00004040211,"about_ca_system_score_gemma":0.000033569275,"threshold_uncertainty_score":0.6015877},"labels":[],"label_agreement":null},{"id":"W4296911184","doi":"10.1101/2022.09.20.508722","title":"<i>Pseudomonas aeruginosa</i> FpvB is a high-affinity transporter for xenosiderophores ferrichrome and ferrioxamine B","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Siderophore; Ferrichrome; Pyoverdine; Bacterial outer membrane; Pseudomonas aeruginosa; Biochemistry; ATP-binding cassette transporter; Bacteria; Transporter; Enterobactin; Chemistry; Biology; Microbiology; Escherichia coli; Gene","score_opus":0.010547510721460571,"score_gpt":0.2107849754554358,"score_spread":0.20023746473397525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4296911184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99108446,0.002965491,0.0005073998,0.0007806782,0.0010895574,0.0010965358,0.0023591255,0.000113454174,0.00000331596],"genre_scores_gemma":[0.9903202,0.0023172987,0.005100658,0.00084044144,0.0006516406,0.0005581844,0.000019039197,0.00016916209,0.000023355204],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99684924,0.00008772001,0.00057238096,0.0015796662,0.0002413348,0.0006696805],"domain_scores_gemma":[0.9978004,0.000023607492,0.00034741894,0.0013477971,0.0002453395,0.0002354083],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00035006463,0.00071020925,0.0006898309,0.00017747827,0.00026815722,0.00013727076,0.0006712569,0.0011675153,0.00009744764],"category_scores_gemma":[0.00006308353,0.0007668758,0.00023874674,0.00019782266,0.00024653698,0.0000062610907,0.00090214016,0.0005960563,0.0000043858568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015161588,0.00015529867,0.0016192467,0.00026097163,0.00026050353,0.000020151088,0.0000069169564,0.000009043107,0.9960332,0.00014769855,0.0013279613,0.0000073851966],"study_design_scores_gemma":[0.0011263537,0.000563515,0.033654723,0.000045896148,0.0001948769,1.4141615e-7,0.0000031418042,0.000019481102,0.8800832,0.0000111549425,0.08333646,0.00096104934],"about_ca_topic_score_codex":0.00009391072,"about_ca_topic_score_gemma":0.000016401456,"teacher_disagreement_score":0.115949996,"about_ca_system_score_codex":0.00006722312,"about_ca_system_score_gemma":0.00036934332,"threshold_uncertainty_score":0.9994782},"labels":[],"label_agreement":null},{"id":"W4297231023","doi":"10.1093/bioadv/vbac069","title":"High-throughput design of bacterial anti-sense RNAs using CAREng","year":2022,"lang":"en","type":"article","venue":"Bioinformatics Advances","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Computational biology; Gene; Antisense RNA; Functional genomics; RNA; Transfer RNA; Genetics; Genome; Genomics","score_opus":0.01569035333574757,"score_gpt":0.2419148205237434,"score_spread":0.22622446718799585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4297231023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97341317,0.000948063,0.023830848,0.000035480305,0.0011894534,0.0002762971,0.0002073796,0.000019920439,0.00007938345],"genre_scores_gemma":[0.905566,0.0007168166,0.09317204,0.000076242504,0.00020023885,0.000014164548,0.00020638619,0.000022011001,0.000026118298],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889225,0.00005700257,0.00043646482,0.00018273432,0.00017107023,0.00026046042],"domain_scores_gemma":[0.9992122,0.000011719206,0.00031483755,0.00034969367,0.00006913172,0.000042424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019359872,0.000169559,0.00024102314,0.00007524533,0.00017437474,0.000019440298,0.00024349567,0.00011750384,0.00006130657],"category_scores_gemma":[0.000036661142,0.00016505575,0.00006998491,0.00014938877,0.00012815584,0.000011272983,0.0003996054,0.00009893298,0.0000020054752],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013260185,0.000048813727,0.000041723557,0.000043131222,0.000043786462,0.0000034826303,0.00008945943,0.009160289,0.98510045,0.00017512195,0.00016677073,0.0049943686],"study_design_scores_gemma":[0.0011083777,0.0010462027,0.00008158454,0.000011524342,0.00003739353,0.00008591031,0.0005904077,0.003645187,0.89988774,0.0001680805,0.09295056,0.00038700533],"about_ca_topic_score_codex":0.00001676911,"about_ca_topic_score_gemma":0.0000035405242,"teacher_disagreement_score":0.09278379,"about_ca_system_score_codex":0.000021847629,"about_ca_system_score_gemma":0.00010869403,"threshold_uncertainty_score":0.6730778},"labels":[],"label_agreement":null},{"id":"W4297238482","doi":"10.1107/s2053230x22008500","title":"Purification, crystallization and crystallographic analysis of the PorX response regulator associated with the type IX secretion system","year":2022,"lang":"en","type":"article","venue":"Acta Crystallographica Section F Structural Biology Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Alzheimer's Association","keywords":"Secretion; Porphyromonas gingivalis; Biology; Response regulator; Cell biology; Virulence; Regulator; Bacteria; Gene; Genetics; Biochemistry; Bacterial protein","score_opus":0.00835749486659033,"score_gpt":0.22284440381711604,"score_spread":0.21448690895052572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4297238482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952247,0.00044314217,0.00015587512,0.003290517,0.00018867356,0.00043825308,0.00018366094,0.00004311638,0.00003205688],"genre_scores_gemma":[0.99822235,0.00018676154,0.00012546772,0.00011301863,0.000026834772,0.0000853285,0.0011837615,0.000017540526,0.000038953007],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9976071,0.0013298519,0.00035553164,0.000363968,0.00014621891,0.00019734024],"domain_scores_gemma":[0.9974744,0.0001079843,0.0005394081,0.0015179703,0.00032143903,0.00003879782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006304957,0.0001853544,0.00023392455,0.00033135596,0.0012882943,0.000028576875,0.0008936807,0.00026003105,0.00001556208],"category_scores_gemma":[0.00012360529,0.000121831865,0.00015124986,0.00274261,0.00094124937,0.00000823754,0.00064693455,0.00031801796,1.4203784e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030501306,0.000026119642,0.020584354,0.0000043162177,0.0008624135,5.9540508e-8,0.00008846693,0.00021573233,0.9766074,0.0011805447,0.00007860775,0.000046983318],"study_design_scores_gemma":[0.0007425821,0.0013925213,0.92995375,0.000013335648,0.0013514191,0.00007176459,0.0016075684,0.0020142281,0.0016673573,0.00026980136,0.060486376,0.0004292869],"about_ca_topic_score_codex":0.000059039365,"about_ca_topic_score_gemma":0.00055658433,"teacher_disagreement_score":0.97494006,"about_ca_system_score_codex":0.00004125147,"about_ca_system_score_gemma":0.0000814408,"threshold_uncertainty_score":0.9908649},"labels":[],"label_agreement":null},{"id":"W4302761349","doi":"10.1128/spectrum.01290-22","title":"Bacterial Outer Membrane Polysaccharide Export (OPX) Proteins Occupy Three Structural Classes with Selective β-Barrel Porin Requirements for Polymer Secretion","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; PROTEO; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Armand-Frappier Foundation; Department of Science and Technology, Ministry of Science and Technology, India; David and Lucile Packard Foundation","keywords":"Bacterial outer membrane; Periplasmic space; Porin; Secretion; Myxococcus xanthus; Biology; Cell envelope; Inner membrane; Escherichia coli; Biochemistry; Bacteria; Microbiology; Cell biology; Gene; Genetics; Membrane","score_opus":0.009592476164734237,"score_gpt":0.226333860595274,"score_spread":0.21674138443053975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4302761349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99493176,0.00018196109,0.0007284814,0.0011773111,0.001039351,0.0011283467,0.00070497376,0.000051965777,0.0000558289],"genre_scores_gemma":[0.99510986,0.000017997008,0.0009942048,0.00042546832,0.0006243279,0.0003365839,0.0019352849,0.000059965747,0.00049629866],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978646,0.00010620662,0.0003883294,0.0008666945,0.00008201711,0.0006921574],"domain_scores_gemma":[0.99909496,0.000009690802,0.00027835518,0.0004657027,0.00006405191,0.00008724807],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019243227,0.00037626596,0.00038454763,0.00011893807,0.0003730806,0.000032704924,0.00042795553,0.0003613741,0.00034883418],"category_scores_gemma":[0.000019344547,0.0003300166,0.00014313565,0.0001504436,0.00022428516,0.000008031541,0.00037016807,0.00027220682,0.0000046461882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020785162,0.00006284792,0.0021289056,0.000012814132,0.00023671826,0.000008314445,0.000028229277,0.0000049405116,0.9944449,0.00020813117,0.0005450458,0.00024063727],"study_design_scores_gemma":[0.0018791802,0.0033138208,0.0016265364,0.000005124146,0.000056263743,0.00033762775,0.00004964805,0.000008344341,0.973343,0.00016572916,0.018756036,0.00045867916],"about_ca_topic_score_codex":0.00008886445,"about_ca_topic_score_gemma":0.00052505796,"teacher_disagreement_score":0.021101888,"about_ca_system_score_codex":0.00008874216,"about_ca_system_score_gemma":0.00025418974,"threshold_uncertainty_score":0.9999152},"labels":[],"label_agreement":null},{"id":"W4304891263","doi":"10.1007/978-1-0716-2663-4_18","title":"Single-Molecule Tracking of RNA Polymerase In and Out of Condensates in Live Bacterial Cells","year":2022,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Polymerase; RNA polymerase; RNA; Fluorophore; Biophysics; Cell biology; Computational biology; Bacteria; Biology; Tracking (education); Chemistry; Nanotechnology; Gene; Biochemistry; Physics; Materials science; Genetics; Fluorescence; Optics","score_opus":0.019249532382885123,"score_gpt":0.32230518585538237,"score_spread":0.30305565347249724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4304891263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939175,0.0014365205,0.0039291093,0.00007724364,0.0003174704,0.00022497348,0.000041695683,0.0000047557905,0.000050689607],"genre_scores_gemma":[0.9420089,0.00011372164,0.05766,0.00008732843,0.000021531812,0.000028108949,0.000045725756,0.000026437474,0.000008237192],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975863,0.0010477282,0.00055919064,0.00044977397,0.000056504447,0.00030047607],"domain_scores_gemma":[0.99939054,0.00005623527,0.00020369621,0.00028803968,0.000030477851,0.00003098999],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00080912997,0.00017763418,0.0004395309,0.00028801564,0.000014672494,0.000004455489,0.00025784862,0.00032153612,0.000030205369],"category_scores_gemma":[0.00016656391,0.0001938855,0.000067821384,0.0002116583,0.00026302563,0.0000017476527,0.00046896978,0.00022620718,1.2971299e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022409853,0.00018015952,0.001980906,0.000020555566,0.000020278547,0.000020500094,0.00018336298,0.000035831057,0.9897857,0.00010378518,0.000001852745,0.0074430215],"study_design_scores_gemma":[0.0010785636,0.000937645,0.0005268292,0.0000119266215,0.00000675371,0.000009014583,0.00021087343,0.00003709162,0.99586445,0.00053698313,0.00059993507,0.00017990926],"about_ca_topic_score_codex":0.00016607255,"about_ca_topic_score_gemma":0.00015668113,"teacher_disagreement_score":0.05373089,"about_ca_system_score_codex":0.000022175303,"about_ca_system_score_gemma":0.00005963875,"threshold_uncertainty_score":0.79064214},"labels":[],"label_agreement":null},{"id":"W4307459871","doi":"10.1101/2022.10.21.513317","title":"Phosphatidylglycerol is the lipid donor for synthesis of phospholipid-linked enterobacterial common antigen","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Alberta; McGovern Medical School","keywords":"Phosphatidylglycerol; Cardiolipin; Diacylglycerol kinase; Phospholipid; Biochemistry; Escherichia coli; Bacterial outer membrane; Biosynthesis; Lipid A; Phosphatidylethanolamine; Chemistry; Phosphodiester bond; Biology; Lipopolysaccharide; Membrane; Phosphatidylcholine; Phosphorylation; Gene","score_opus":0.010490336652388783,"score_gpt":0.2209131763177992,"score_spread":0.21042283966541042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4307459871","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907217,0.0012075427,0.00022635008,0.00067285076,0.0029358813,0.0014726849,0.0026940561,0.0000637256,0.0000051851275],"genre_scores_gemma":[0.9934944,0.0019885863,0.0019063323,0.00046670373,0.0011466375,0.00082935195,0.000008920852,0.00014841213,0.000010674713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971544,0.00016717883,0.00076782674,0.0010799096,0.0002536821,0.0005769656],"domain_scores_gemma":[0.99667376,0.00006391066,0.0008238505,0.0020127324,0.0003027413,0.00012301051],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00060884043,0.0005946372,0.00073783024,0.0001101297,0.00025830773,0.00010925495,0.0014676951,0.0009954186,0.00014364073],"category_scores_gemma":[0.00020270374,0.0005357355,0.00045267883,0.00020230246,0.000283135,0.000005197701,0.0016009001,0.0004550854,0.0000051400984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048380627,0.00017160435,0.0023761804,0.00020233149,0.0004247729,0.0000017249782,0.000007986818,0.00001304668,0.9948034,0.00008069619,0.0014028582,0.000031588133],"study_design_scores_gemma":[0.0005537516,0.00028171827,0.009114683,0.00006197911,0.00015102274,2.78122e-8,0.000004652834,0.00003339175,0.84791976,0.0000020365185,0.14138581,0.00049116724],"about_ca_topic_score_codex":0.00008546139,"about_ca_topic_score_gemma":0.000007084584,"teacher_disagreement_score":0.14688365,"about_ca_system_score_codex":0.00006906625,"about_ca_system_score_gemma":0.0004042147,"threshold_uncertainty_score":0.9997094},"labels":[],"label_agreement":null},{"id":"W4308156625","doi":"10.1016/j.isci.2022.105483","title":"YihE is a novel binding partner of Rho and regulates Rho-dependent transcription termination in the Cpx stress response","year":2022,"lang":"en","type":"article","venue":"iScience","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Cell biology; Transcription factor; Proteases; Transcription (linguistics); Biology; Rho-associated protein kinase; Chemistry; Kinase; Genetics; Biochemistry; Gene; Enzyme","score_opus":0.014604263124286816,"score_gpt":0.2530404498175378,"score_spread":0.238436186693251,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308156625","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983609,0.00023136748,0.000042144027,0.0010912623,0.000074656775,0.00011396778,0.00005405582,0.000002465203,0.000029201761],"genre_scores_gemma":[0.99951315,0.000057426096,0.000108655186,0.000101903206,0.000013112552,0.000017896631,0.000009961283,0.0000032541302,0.0001746522],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993413,0.00007421231,0.00012172783,0.00021342192,0.00013116114,0.0001181758],"domain_scores_gemma":[0.9997324,0.000011116868,0.00005710731,0.00016919908,0.000017490682,0.000012718574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005697282,0.000057978777,0.00005792263,0.000060858452,0.000099604295,0.000017738781,0.00022387557,0.000057828365,0.000011277377],"category_scores_gemma":[0.000028025117,0.000044901743,0.000019087769,0.0001599142,0.00013423433,0.0000037018635,0.00010394728,0.00006581241,2.4643808e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009244145,0.00004708994,0.0006133031,0.000003937805,0.0000017532775,8.3802445e-7,0.00044186594,0.000023815564,0.9961284,0.00004835892,0.00002732855,0.0025708755],"study_design_scores_gemma":[0.00026892562,0.000331993,0.031715885,0.0000058416767,0.0000042616134,0.000024270581,0.0006724537,0.00019801011,0.9625022,0.00004644147,0.0041565215,0.00007323111],"about_ca_topic_score_codex":0.000018885914,"about_ca_topic_score_gemma":0.000028054093,"teacher_disagreement_score":0.033626225,"about_ca_system_score_codex":0.000008694652,"about_ca_system_score_gemma":0.00002974272,"threshold_uncertainty_score":0.183104},"labels":[],"label_agreement":null},{"id":"W4308963766","doi":"10.1038/s41579-022-00818-6","title":"Shaping bacterial gene expression by physiological and proteome allocation constraints","year":2022,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Science Foundation","keywords":"Catabolite repression; Flux (metallurgy); Proteome; Biology; Protein expression; Psychological repression; Regulation of gene expression; Gene expression; Cell biology; Computational biology; Gene; Biochemistry; Chemistry","score_opus":0.03209651745812348,"score_gpt":0.29975465898029846,"score_spread":0.267658141522175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308963766","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007940024,0.9957752,0.00003221543,0.000039276078,0.0007510958,0.0019403814,0.0006123056,0.000024792667,0.00003069808],"genre_scores_gemma":[0.00007564136,0.98498267,0.0011763178,0.00024802965,0.00059328537,0.00043764676,0.012331583,0.000056955912,0.00009790028],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99657357,0.0008321388,0.0008281916,0.0012494763,0.000049831968,0.0004667792],"domain_scores_gemma":[0.99853295,0.00002740708,0.0007000003,0.00061375723,0.000035252353,0.0000906233],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004851246,0.00067196914,0.0018202757,0.00009282085,0.0001619466,0.000030750474,0.0005922379,0.00335789,0.00038653731],"category_scores_gemma":[0.00017112475,0.00049229525,0.00040048917,0.00015006585,0.00041207243,0.000003048213,0.000827431,0.0012607581,0.000021040967],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012448433,0.000032497872,1.4463528e-7,0.001044719,0.000048270274,0.0000015074785,0.0000014699788,7.86752e-9,0.6780719,0.0000063432667,0.005521152,0.31525952],"study_design_scores_gemma":[0.00022268982,0.00033507982,3.5629694e-7,0.000644998,0.00014337135,0.00040035762,0.000001483159,4.570439e-8,0.023691058,0.000006029319,0.9740389,0.0005156237],"about_ca_topic_score_codex":0.0000010647868,"about_ca_topic_score_gemma":0.0000011333873,"teacher_disagreement_score":0.9685178,"about_ca_system_score_codex":0.000047343696,"about_ca_system_score_gemma":0.0001385156,"threshold_uncertainty_score":0.9997529},"labels":[],"label_agreement":null},{"id":"W4309505073","doi":"10.1101/2022.11.18.517105","title":"A single extracellular loop of FoxA controls ligand specificity, uptake, and signaling in <i>Pseudomonas aeruginosa</i>","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Michael G. DeGroote Institute for Infectious Disease Research, McMaster University","keywords":"Siderophore; Pseudomonas aeruginosa; Extracellular; Biology; Ligand (biochemistry); Intracellular; Microbiology; Bacterial outer membrane; Cell biology; Transporter; Bacteria; Signal transduction; Antibiotics; Genetics; Receptor; Gene; Escherichia coli","score_opus":0.012771397995644787,"score_gpt":0.20560254820352303,"score_spread":0.19283115020787825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309505073","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873431,0.010786239,0.0002153195,0.00012205599,0.0005373256,0.00066836615,0.00027305196,0.00004249276,0.000012078574],"genre_scores_gemma":[0.9954706,0.0015980415,0.0023623654,0.00007354454,0.0002897145,0.00009414236,0.000003335768,0.00009629987,0.000011968355],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99724483,0.00013557228,0.0007542283,0.0011029377,0.0002461487,0.0005162972],"domain_scores_gemma":[0.9981587,0.000026200187,0.0004943805,0.0009959682,0.00018325212,0.00014147702],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00059236825,0.0005072376,0.0007039885,0.00023664256,0.00008531303,0.00008774273,0.0005533803,0.0009290277,0.000030019346],"category_scores_gemma":[0.000118064905,0.0005833412,0.00015585752,0.0002742578,0.00024413267,0.0000056122276,0.0012038405,0.0006288993,0.0000018905641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013050601,0.0002563312,0.0033972852,0.00016300553,0.00011264668,0.000044338292,0.000004732672,0.00006072524,0.9956079,0.00016831908,0.000036507918,0.000017669752],"study_design_scores_gemma":[0.0009429212,0.00032805468,0.005630751,0.00010446566,0.00006548079,1.13961846e-7,0.000007690275,0.000037650276,0.97408926,0.0000056287995,0.018209463,0.0005785355],"about_ca_topic_score_codex":0.000047234396,"about_ca_topic_score_gemma":0.000011330654,"teacher_disagreement_score":0.021518687,"about_ca_system_score_codex":0.000062312676,"about_ca_system_score_gemma":0.00023615005,"threshold_uncertainty_score":0.9996618},"labels":[],"label_agreement":null},{"id":"W4309878960","doi":"10.1007/s10534-022-00466-6","title":"Structural and functional insights into iron acquisition from lactoferrin and transferrin in Gram-negative bacterial pathogens","year":2022,"lang":"en","type":"article","venue":"BioMetals","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Children's Hospital Research Institute; Canadian Light Source","keywords":"Periplasmic space; Transferrin; Lactoferrin; Biochemistry; Moraxella catarrhalis; Protoporphyrin IX; Bacterial outer membrane; Peroxiredoxin; Biology; Ferrichrome; Chemistry; Biophysics; Escherichia coli; Gene; Haemophilus influenzae","score_opus":0.009856807844882678,"score_gpt":0.21374666886610524,"score_spread":0.20388986102122256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309878960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998291,0.00077382533,0.00003288644,0.00016123189,0.0003352666,0.00016989648,0.00021100827,0.0000092426135,0.000015612728],"genre_scores_gemma":[0.9984696,0.00017053109,0.00032190082,0.000088593406,0.0001640181,0.00003281174,0.0007140443,0.000012813736,0.000025697078],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990778,0.00010594388,0.00018089864,0.00039408746,0.00009145307,0.00014983209],"domain_scores_gemma":[0.9997403,0.000011067488,0.000044621538,0.00013594358,0.000017069538,0.00005101619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007522667,0.00014535866,0.00015922109,0.00012319055,0.00011989891,0.000027597622,0.000072485556,0.0001596361,0.00015226926],"category_scores_gemma":[0.000011175361,0.00013860234,0.00003391986,0.00013195217,0.00012320555,0.000005316907,0.00020526079,0.00009338133,8.810123e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026433318,0.000022942635,0.0009830672,0.0000052038135,0.00002494139,0.00000393134,0.00014079237,0.0000031995792,0.9949979,0.00008970371,0.00001784083,0.0034461503],"study_design_scores_gemma":[0.0022862253,0.0009915566,0.28448206,0.0000055796177,0.000035047746,0.000029478151,0.00031656958,0.00007914582,0.69829315,0.0028578937,0.010199948,0.00042334295],"about_ca_topic_score_codex":0.00018590306,"about_ca_topic_score_gemma":0.00025482563,"teacher_disagreement_score":0.29670474,"about_ca_system_score_codex":0.000019171765,"about_ca_system_score_gemma":0.000025071648,"threshold_uncertainty_score":0.5652039},"labels":[],"label_agreement":null},{"id":"W4310535300","doi":"10.3389/fmolb.2022.1054408","title":"Cellular functions of the ClpP protease impacting bacterial virulence","year":2022,"lang":"en","type":"review","venue":"Frontiers in Molecular Biosciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Toronto","keywords":"Virulence; Biology; Protease; Proteostasis; Proteases; Effector; Chaperone (clinical); AAA proteins; Cell biology; Serine protease; CLPB; ATPase; Biofilm; Microbiology; Bacteria; Enzyme; Heat shock protein; Biochemistry; Genetics; Gene","score_opus":0.014677807956796268,"score_gpt":0.25333430769802545,"score_spread":0.23865649974122918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310535300","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0069860383,0.9858758,0.0011059707,0.000038662136,0.004723343,0.0009910158,0.00017358932,0.000010190594,0.00009541483],"genre_scores_gemma":[0.0014530865,0.99585146,0.002001993,0.000034969184,0.0001906313,0.00015374122,0.00015500789,0.000038868013,0.000120263496],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976517,0.0003765989,0.00055748963,0.00071064295,0.00029794112,0.00040564916],"domain_scores_gemma":[0.99859565,0.000009262595,0.00051548146,0.00078923174,0.000027315495,0.00006302716],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00047468574,0.00034606227,0.0006546574,0.00021328611,0.00018986661,0.000042094034,0.00137697,0.00046165273,0.00004792519],"category_scores_gemma":[0.00024142103,0.0002491914,0.00046291624,0.000871545,0.000571907,0.0000040490086,0.0007788695,0.00038039038,0.0000018573943],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041849187,0.00020997488,0.00022397244,0.0015340217,0.00019023221,0.000018598179,0.000028987422,0.000017296763,0.44515166,0.000037633887,0.0015612029,0.55098456],"study_design_scores_gemma":[0.00011685192,0.00020099842,0.0000057540838,0.00031303323,0.00012656086,0.000010759252,0.000059674356,0.0000054329603,0.030739302,0.000028769078,0.9680876,0.00030528035],"about_ca_topic_score_codex":0.000030116498,"about_ca_topic_score_gemma":0.000006138252,"teacher_disagreement_score":0.9665264,"about_ca_system_score_codex":0.000053724354,"about_ca_system_score_gemma":0.00060478435,"threshold_uncertainty_score":0.999996},"labels":[],"label_agreement":null},{"id":"W4311176845","doi":"10.1128/mbio.03149-22","title":"Pseudomonas aeruginosa FpvB Is a High-Affinity Transporter for Xenosiderophores Ferrichrome and Ferrioxamine B","year":2022,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Siderophore; Ferrichrome; Pyoverdine; Enterobactin; Bacterial outer membrane; ATP-binding cassette transporter; Biochemistry; Pseudomonas aeruginosa; Bacteria; Chemistry; Microbiology; Transporter; Biology; Escherichia coli","score_opus":0.00956702640472466,"score_gpt":0.21663235511474524,"score_spread":0.2070653287100206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311176845","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964319,0.0007388852,0.00017181254,0.0015732389,0.0002687178,0.0003099139,0.00043914685,0.00002140316,0.000045016972],"genre_scores_gemma":[0.99666154,0.00021347702,0.0009919903,0.00095114525,0.00016419397,0.00012083509,0.00032018858,0.000026936688,0.0005496813],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896,0.00002931391,0.00019072158,0.00044777573,0.00009244116,0.00027972372],"domain_scores_gemma":[0.9995224,0.000008311563,0.00006247123,0.00030575512,0.00003533567,0.00006571146],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001130585,0.00017308557,0.00018904831,0.00005044213,0.00021444971,0.000023009263,0.00019845362,0.00017218218,0.0001517381],"category_scores_gemma":[0.000010447644,0.00017120433,0.0000798358,0.00007894187,0.000100321064,0.0000016873272,0.0001849972,0.00011551989,0.0000022652912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015466538,0.00009237396,0.0009097738,0.000019081908,0.000056732526,0.000005737756,0.000058902715,0.0000033464585,0.99237263,0.00016985569,0.004247123,0.0019098023],"study_design_scores_gemma":[0.0013907278,0.0015794442,0.0134774195,0.0000028968084,0.00004771039,0.00005626826,0.00006143911,0.000018586232,0.74311024,0.00051994924,0.23939045,0.00034484538],"about_ca_topic_score_codex":0.000075386975,"about_ca_topic_score_gemma":0.00006333169,"teacher_disagreement_score":0.24926235,"about_ca_system_score_codex":0.000013155615,"about_ca_system_score_gemma":0.000041124225,"threshold_uncertainty_score":0.698151},"labels":[],"label_agreement":null},{"id":"W4311305932","doi":"10.1038/s41467-022-35129-0","title":"Structure-function studies reveal ComEA contains an oligomerization domain essential for transformation in gram-positive bacteria","year":2022,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"SLAC National Accelerator Laboratory; Basic Energy Sciences; Biological and Environmental Research; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Office of Science; Canada Foundation for Innovation; National Science Foundation; National Institutes of Health; U.S. Department of Health and Human Services; U.S. Department of Energy","keywords":"Bacillus subtilis; Peptidoglycan; Bacteria; Periplasmic space; DNA; Bacterial cell structure; Transformation (genetics); Gram-positive bacteria; Biology; DNA gyrase; Biophysics; Biochemistry; Gram-negative bacteria; Chemistry; Escherichia coli; Genetics; Gene","score_opus":0.011468014801701044,"score_gpt":0.29332822173344947,"score_spread":0.2818602069317484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311305932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926135,0.001451698,0.0019273607,0.0021698973,0.00045465544,0.00072010007,0.00059362216,0.000022612712,0.000046537007],"genre_scores_gemma":[0.98781997,0.00031489917,0.003623788,0.00036185907,0.000088480505,0.0002095854,0.007548087,0.000017049624,0.000016297801],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906516,0.00022412991,0.00025174418,0.00021997139,0.00008159899,0.00015742324],"domain_scores_gemma":[0.99908155,0.000021932,0.0001155229,0.00061502506,0.00013875398,0.000027206275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020383946,0.00012359863,0.00014759481,0.0001051003,0.00041257084,0.000022584236,0.0004383445,0.0002790312,0.0000065202557],"category_scores_gemma":[0.00003656286,0.00013137865,0.00005165322,0.00020858171,0.00010538504,0.000011870643,0.00021048762,0.0003519503,2.3476352e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002545345,0.00010877254,0.00021972304,0.000009164192,0.00005961672,1.1908861e-7,0.00036013624,0.00005813439,0.98843086,0.008684541,0.0001241861,0.0016902091],"study_design_scores_gemma":[0.0068742647,0.0047867335,0.048494443,0.000036920508,0.00023586143,0.0000626464,0.007234167,0.001003325,0.6185513,0.0123720085,0.29902375,0.0013245934],"about_ca_topic_score_codex":0.000012629683,"about_ca_topic_score_gemma":0.0012286246,"teacher_disagreement_score":0.36987957,"about_ca_system_score_codex":0.000059528156,"about_ca_system_score_gemma":0.000052495867,"threshold_uncertainty_score":0.5357466},"labels":[],"label_agreement":null},{"id":"W4312876952","doi":"10.1063/4.0000171","title":"Solution characterization of the dynamic conjugative entry exclusion protein TraG","year":2022,"lang":"en","type":"article","venue":"Structural Dynamics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Argonne National Laboratory; National Institute of General Medical Sciences; Office of Science; National Institutes of Health; York University; Natural Sciences and Engineering Research Council of Canada; Johns Hopkins University; U.S. Department of Energy","keywords":"Periplasmic space; Plasmid; Secretion; Bacteria; Biology; Biophysics; Chemistry; DNA; Biochemistry; Escherichia coli; Genetics; Gene","score_opus":0.003131397518395209,"score_gpt":0.2017102000516656,"score_spread":0.1985788025332704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312876952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978389,0.000027936014,0.00039947502,0.0005067813,0.0004471051,0.00036576722,0.0003463151,0.000009521659,0.000058185058],"genre_scores_gemma":[0.99847686,0.000016896744,0.00013749338,0.000053346765,0.0000376734,0.000022299595,0.0008406408,0.00001291678,0.00040186898],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992512,0.00008452143,0.00018190776,0.00020792552,0.00012564547,0.0001488339],"domain_scores_gemma":[0.99949396,0.0000015434546,0.00018412166,0.00025472467,0.000047358513,0.000018274424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000061323655,0.000109310626,0.00009967523,0.000026904181,0.00022436581,0.000007129268,0.00026560656,0.00011268491,0.00003397607],"category_scores_gemma":[0.000014389007,0.000086186745,0.000070302245,0.00012973501,0.00011667805,0.000002500361,0.00046328912,0.00014015991,3.1746814e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006923436,0.000009371503,0.00027529598,0.000008839927,0.000014392543,2.2875808e-7,0.00002796428,0.000034092547,0.9926657,0.0007054483,0.0000037386299,0.006185698],"study_design_scores_gemma":[0.00090865605,0.000675056,0.10024865,0.000017075483,0.00003347014,0.00005443666,0.0001740617,0.024033297,0.86919653,0.001793723,0.0024739883,0.0003910403],"about_ca_topic_score_codex":0.000012304253,"about_ca_topic_score_gemma":0.000051161387,"teacher_disagreement_score":0.12346915,"about_ca_system_score_codex":0.000057656343,"about_ca_system_score_gemma":0.000051435487,"threshold_uncertainty_score":0.35145935},"labels":[],"label_agreement":null},{"id":"W4313526025","doi":"10.1101/2023.01.02.522506","title":"Gre factors protect against phenotypic diversification and cheating in <i>Escherichia coli</i> populations under toxic metabolite stress","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Division of Chemical, Bioengineering, Environmental, and Transport Systems; Natural Sciences and Engineering Research Council of Canada; Keio University; National Science Foundation","keywords":"Metabolite; Biology; Population; Escherichia coli; Phenotype; Microbiology; Biochemistry; Gene","score_opus":0.025141395489618378,"score_gpt":0.23055071924438555,"score_spread":0.20540932375476717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313526025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962336,0.0008889106,0.0005756545,0.00020947897,0.00059809955,0.0008227272,0.0005504057,0.00011886307,0.0000022854533],"genre_scores_gemma":[0.99671674,0.0006822706,0.002013844,0.00008739646,0.00023411521,0.0001402489,0.000024890604,0.00009327927,0.00000719987],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99788845,0.00012101235,0.000442119,0.0009605647,0.00015697579,0.00043090776],"domain_scores_gemma":[0.99863243,0.000011439785,0.0003014757,0.0007732403,0.00015556897,0.0001258258],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002653254,0.0004320228,0.00038846096,0.00020637822,0.0001507099,0.00011918132,0.00035212399,0.00096828886,0.0000029904304],"category_scores_gemma":[0.00013085148,0.00046412763,0.00009199614,0.00037399784,0.00012406519,0.000008904671,0.0006619051,0.00049217255,0.0000049761825],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020802074,0.000057463363,0.023668163,0.000121518955,0.0000703495,0.0000024080664,0.000008234718,0.00021516826,0.9756734,0.00014170443,0.000014885577,0.000005924543],"study_design_scores_gemma":[0.00031913622,0.00004389638,0.41171157,0.00009455641,0.000048445694,3.9913064e-9,0.000015154134,0.00015967649,0.5864305,0.0000073929914,0.0007084866,0.00046119548],"about_ca_topic_score_codex":0.00012880057,"about_ca_topic_score_gemma":0.00006181716,"teacher_disagreement_score":0.3892429,"about_ca_system_score_codex":0.00007256222,"about_ca_system_score_gemma":0.00019430727,"threshold_uncertainty_score":0.9997811},"labels":[],"label_agreement":null},{"id":"W4313829137","doi":"10.1128/spectrum.04289-22","title":"Diverse Partners of the Partitioning ParB Protein in Pseudomonas aeruginosa","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Uniwersytet Warszawski","keywords":"Biology; Chromosome segregation; Pseudomonas aeruginosa; Genetics; Chromosome; Cell biology; DNA; DNA replication; Bacteria; Gene","score_opus":0.009927974630651764,"score_gpt":0.2337353697120175,"score_spread":0.22380739508136574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313829137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972306,0.00007812045,0.00000648285,0.0018880664,0.00026341286,0.0002482215,0.00004361771,0.000020913427,0.0002205496],"genre_scores_gemma":[0.999086,0.00006152249,0.00008053092,0.00011026137,0.000074145166,0.000025400741,0.00009642001,0.000011338126,0.0004543701],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990335,0.000086169064,0.0002185262,0.00029694446,0.000027745147,0.00033712477],"domain_scores_gemma":[0.9995175,0.0000059789636,0.00009329772,0.00034489177,0.000015960593,0.000022354827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015774347,0.00012486266,0.00015451852,0.000071356015,0.000060278395,0.0000061649926,0.0002857092,0.00029036246,0.000035875673],"category_scores_gemma":[0.000038052887,0.00009655868,0.000083350555,0.00029301512,0.0003073126,0.0000014720513,0.00031794482,0.000129034,0.000030137911],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035242658,0.000025746573,0.008104839,0.0000067985097,0.000019272185,0.0000034177551,0.00002703069,0.000025565589,0.9902328,0.00035856024,0.00094512245,0.00021559017],"study_design_scores_gemma":[0.0003928832,0.00013763657,0.009539364,0.000014993331,0.0000058440723,0.000015526868,0.000114620416,0.0000058382216,0.9673758,0.00034717095,0.02192727,0.00012302145],"about_ca_topic_score_codex":0.00004345652,"about_ca_topic_score_gemma":0.0006349911,"teacher_disagreement_score":0.022856982,"about_ca_system_score_codex":0.000012144578,"about_ca_system_score_gemma":0.000050297094,"threshold_uncertainty_score":0.3937549},"labels":[],"label_agreement":null},{"id":"W4313893926","doi":"10.1128/jb.00403-22","title":"Phosphatidylglycerol Is the Lipid Donor for Synthesis of Phospholipid-Linked Enterobacterial Common Antigen","year":2023,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; University of Alberta; McGovern Medical School","keywords":"Phosphatidylglycerol; Biology; Phospholipid; Antigen; Microbiology; Cardiolipins; Biochemistry; Cardiolipin; Genetics; Membrane","score_opus":0.013158080371443207,"score_gpt":0.2518841045032926,"score_spread":0.23872602413184943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313893926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951187,0.00022446974,0.000107175816,0.0021140066,0.0019660008,0.00027495614,0.00016054828,0.000009552563,0.000024633531],"genre_scores_gemma":[0.99572414,0.0019934552,0.00053694873,0.00040450215,0.0011620808,0.000023280876,0.000046911657,0.000032174765,0.00007649081],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983773,0.00012639954,0.00080419343,0.00024089677,0.00010202769,0.00034918668],"domain_scores_gemma":[0.9983134,0.0001263069,0.0008316441,0.00041826093,0.00024028742,0.00007005751],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000608868,0.00021130804,0.00055343163,0.00011743283,0.00008873384,0.000023570492,0.0006494915,0.00044698594,0.000057021563],"category_scores_gemma":[0.00024471187,0.00014637118,0.0003650007,0.00015435736,0.0002620177,0.0000062980994,0.0002075013,0.00015422194,0.000007759123],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013685253,0.00005965732,0.002879329,0.000028424643,0.00026688367,0.0000024673827,0.000064870896,0.0000068351837,0.9825484,0.000035439367,0.004492938,0.008246201],"study_design_scores_gemma":[0.0009683332,0.0015402838,0.023330012,0.00003052165,0.00007153603,0.000081857186,0.000065186854,0.000020161659,0.82880694,0.00011483,0.144816,0.00015433566],"about_ca_topic_score_codex":0.000014683172,"about_ca_topic_score_gemma":0.000012767405,"teacher_disagreement_score":0.15374148,"about_ca_system_score_codex":0.000013526687,"about_ca_system_score_gemma":0.00011251594,"threshold_uncertainty_score":0.59688437},"labels":[],"label_agreement":null},{"id":"W4315619492","doi":"10.1093/nar/gkac1248","title":"Metabolically-targeted dCas9 expression in bacteria","year":2023,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Western University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Gammaproteobacteria; Escherichia coli; Operon; Bacteria; Transcription (linguistics); Transcription factor; Regulation of gene expression; Alphaproteobacteria; Gene expression; Actinobacteria; Genetics; Gene; Microbiology; Cell biology; Biochemistry","score_opus":0.033151425515715136,"score_gpt":0.3304323861602652,"score_spread":0.29728096064455006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4315619492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99732655,0.0001993854,0.000015908014,0.0009989418,0.0002010327,0.00023821944,0.000022910148,0.000050332805,0.0009467297],"genre_scores_gemma":[0.9961981,0.0007163413,0.00094328634,0.000072983436,0.0002845429,0.000059461956,0.00017536104,0.00003772449,0.0015121562],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980192,0.00022872124,0.00023699013,0.00051767286,0.00029488036,0.00070248975],"domain_scores_gemma":[0.999136,0.000020744355,0.000028621664,0.0005739862,0.00012724912,0.000113414324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009184559,0.00014066404,0.00017774623,0.000326856,0.000110632776,0.000047895253,0.00049766246,0.00049439387,0.00021042526],"category_scores_gemma":[0.00027367883,0.000125325,0.000060638773,0.0008339008,0.00019939961,0.000003658812,0.00074039266,0.00036143555,0.00033877563],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000111171015,0.000046136593,0.0011895515,0.000009728081,0.000009534523,0.000014224245,0.000031142754,0.0000028355123,0.98550975,0.000074898024,0.007523529,0.0054775015],"study_design_scores_gemma":[0.00041430574,0.00020109244,0.04461916,0.000011193204,0.0000014036577,0.000004053923,0.00006531383,0.00005295089,0.7219892,0.00023505306,0.2322718,0.00013448065],"about_ca_topic_score_codex":0.000023817707,"about_ca_topic_score_gemma":0.00004074924,"teacher_disagreement_score":0.26352054,"about_ca_system_score_codex":0.000018750048,"about_ca_system_score_gemma":0.000085183696,"threshold_uncertainty_score":0.5110605},"labels":[],"label_agreement":null},{"id":"W4316928219","doi":"10.1002/1873-3468.14574","title":"Roles of methionine and cysteine residues of the <i>Escherichia coli</i> sensor kinase <scp>HprS</scp> in reactive chlorine species sensing","year":2023,"lang":"en","type":"article","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Directorate for Biological Sciences; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Periplasmic space; Chemistry; Cysteine; Methionine; Biochemistry; Escherichia coli; Tobacco etch virus; Histidine; Reactive oxygen species; Mutagenesis; Enzyme; Amino acid; Mutant; Biology","score_opus":0.009366208707726732,"score_gpt":0.2126928270638372,"score_spread":0.20332661835611046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4316928219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964781,0.00018828083,0.000024529365,0.002862375,0.000129393,0.0001538874,0.00003949751,0.000011294694,0.00011265252],"genre_scores_gemma":[0.9982848,0.00028650035,0.0005992219,0.00039855187,0.0001233367,0.0000026823816,0.000026941409,0.000016618833,0.00026133246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915165,0.000076343305,0.00023481868,0.00024022904,0.00009916044,0.00019781923],"domain_scores_gemma":[0.9994012,0.000042041993,0.0001797597,0.00030410895,0.00004797578,0.000024918618],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018417218,0.00013276457,0.0002270362,0.00007959096,0.00003344178,0.000008332588,0.0001355495,0.00015678465,7.1606934e-7],"category_scores_gemma":[0.00021566942,0.00010375706,0.000057210786,0.00029246946,0.00025519653,0.0000024746316,0.00021972129,0.00011876458,7.61602e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035372464,0.000014532361,0.0021143039,0.000030126199,0.000036280835,0.000006562715,0.00012278055,0.00003321521,0.9965341,0.000032612403,0.00066351355,0.00037657574],"study_design_scores_gemma":[0.0003964697,0.00012937147,0.038401186,0.000037835907,0.00001654841,0.000005390788,0.00028900534,0.000017029606,0.94832754,0.000018669867,0.012309696,0.00005124581],"about_ca_topic_score_codex":0.00007743592,"about_ca_topic_score_gemma":0.00021461256,"teacher_disagreement_score":0.048206575,"about_ca_system_score_codex":0.000007336904,"about_ca_system_score_gemma":0.00002061555,"threshold_uncertainty_score":0.42310902},"labels":[],"label_agreement":null},{"id":"W4320032971","doi":"10.1093/nar/gkad075","title":"Recipient UvrD helicase is involved in single- to double-stranded DNA conversion during conjugative plasmid transfer","year":2023,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; China Scholarship Council; Fondation pour la Recherche Médicale; Keio University; Agence Nationale de la Recherche","keywords":"Biology; Plasmid; Horizontal gene transfer; DNA; Transposable element; Genetics; Gene; Escherichia coli; Cell biology; Genome; Molecular biology","score_opus":0.059531671602028664,"score_gpt":0.31958828707656817,"score_spread":0.2600566154745395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4320032971","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99573356,0.00003486306,0.000014524357,0.0029522015,0.00014897568,0.0006040051,0.00006037592,0.00004260817,0.00040891508],"genre_scores_gemma":[0.9984671,0.00030577386,0.00008402079,0.00018603283,0.00012294929,0.00006433042,0.0000905484,0.00003846765,0.00064080453],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99778885,0.00012793258,0.0002890682,0.0006777071,0.0003699075,0.00074652163],"domain_scores_gemma":[0.9991058,0.000025453572,0.000018488794,0.0004606951,0.00018801032,0.00020156198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005664416,0.0001892055,0.00021862822,0.0004095777,0.0001572233,0.000051666117,0.0004061904,0.00047134297,0.00014139534],"category_scores_gemma":[0.000073317016,0.00018464483,0.000079324906,0.0009141631,0.00024154756,0.0000055501996,0.00039157807,0.00036642514,0.00026596017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016805074,0.00009717981,0.00085940416,0.000037380494,0.000027579224,0.000038630613,0.0003807088,0.000009785803,0.99483365,0.000029888777,0.001238937,0.00076634745],"study_design_scores_gemma":[0.0026782167,0.0008775532,0.0035113674,0.000044778288,0.000003587999,0.0000051714896,0.0004129935,0.000044139328,0.97286373,0.000047763122,0.019294828,0.0002158794],"about_ca_topic_score_codex":0.00004639084,"about_ca_topic_score_gemma":0.00016397885,"teacher_disagreement_score":0.021969927,"about_ca_system_score_codex":0.0000808159,"about_ca_system_score_gemma":0.00008585005,"threshold_uncertainty_score":0.7529598},"labels":[],"label_agreement":null},{"id":"W4320496604","doi":"10.3390/ijms24043696","title":"Genomic SELEX Reveals Pervasive Role of the Flagella Master Regulator FlhDC in Carbon Metabolism","year":2023,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Flagellum; Regulator; Biology; Gene; PEP group translocation; Cell biology; Regulation of gene expression; Transcriptional regulation; Genetics; Gene expression; Escherichia coli","score_opus":0.008939490785466447,"score_gpt":0.23860948141843719,"score_spread":0.22966999063297075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4320496604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972335,0.00091029936,0.000010626452,0.0009543967,0.0005873319,0.000060806822,0.000006732572,0.0000018835455,0.00023440618],"genre_scores_gemma":[0.9990526,0.0002976519,0.00029784444,0.00012698458,0.00014687049,0.0000013767635,0.0000017358259,0.0000064051746,0.000068566784],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990028,0.00007321111,0.00032804202,0.00013691149,0.00031817457,0.0001408464],"domain_scores_gemma":[0.999352,0.000008590646,0.00027876624,0.00013788228,0.00019497579,0.000027789954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046770446,0.00008269322,0.00013164496,0.00017248042,0.000020202766,0.000025395757,0.00088421575,0.000100310266,0.0000059420013],"category_scores_gemma":[0.000073934825,0.000057737325,0.00011798517,0.00024219154,0.00020344651,0.0000044449866,0.00020632328,0.00008761963,0.000001248932],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024785817,0.000014878755,0.004215195,0.0000015490997,0.00004017139,0.000008148307,0.000083764295,0.00038864333,0.99398404,0.0001911102,0.000029548004,0.0010181895],"study_design_scores_gemma":[0.00028210602,0.0000995108,0.03960139,0.00002532059,0.000010248872,0.000062299776,0.00022098779,0.00010337904,0.95563537,0.0013318326,0.0025542125,0.00007334305],"about_ca_topic_score_codex":0.000015806492,"about_ca_topic_score_gemma":0.000014309827,"teacher_disagreement_score":0.038348645,"about_ca_system_score_codex":0.000012743679,"about_ca_system_score_gemma":0.00011964313,"threshold_uncertainty_score":0.23544598},"labels":[],"label_agreement":null},{"id":"W4321168864","doi":"10.1002/btpr.3335","title":"Modeling the effect of oxidative stress on <i>Bordetella pertussis</i> fermentations","year":2023,"lang":"en","type":"article","venue":"Biotechnology Progress","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada); University of Waterloo","funders":"Mitacs","keywords":"Bordetella pertussis; Oxidative stress; Oxidative phosphorylation; Intracellular; Bordetella; Chemistry; Biochemistry; Food science; Bacteria; Biology; Microbiology; Genetics","score_opus":0.00969436840133672,"score_gpt":0.26592643827022727,"score_spread":0.2562320698688906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321168864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952934,0.0005037902,0.00015960126,0.0030979947,0.00022418432,0.0004587016,0.00006750144,0.00012373057,0.00007110334],"genre_scores_gemma":[0.9986137,0.0006683393,0.00022357894,0.00005588725,0.00007778438,0.000114796574,0.00013101107,0.00002611236,0.00008879266],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99882287,0.00009447199,0.00022881597,0.00040406932,0.00012022169,0.0003295729],"domain_scores_gemma":[0.999182,0.000026934027,0.00009289439,0.00061998627,0.00004828414,0.000029917186],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021638317,0.00020351591,0.00020570464,0.0001496572,0.00014982697,0.000015158875,0.0005149517,0.00064316846,0.0000053294334],"category_scores_gemma":[0.000087966095,0.00013439206,0.00009673882,0.0004232029,0.000528696,0.000001802349,0.00031715858,0.00019633118,0.000022712265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021074005,0.000053540414,0.0013633694,0.000039865987,0.00013600981,0.0000046761675,0.000026290581,0.00068033865,0.96783847,0.0006995113,0.00033089856,0.028616317],"study_design_scores_gemma":[0.00046430377,0.0019396216,0.0001816332,0.000023620702,0.000030003896,0.000006453611,0.00009565102,0.0015079492,0.9920609,0.00006532817,0.003473087,0.00015142113],"about_ca_topic_score_codex":0.0000074001623,"about_ca_topic_score_gemma":0.000013633617,"teacher_disagreement_score":0.028464897,"about_ca_system_score_codex":0.000008824302,"about_ca_system_score_gemma":0.000025540767,"threshold_uncertainty_score":0.5480349},"labels":[],"label_agreement":null},{"id":"W4322490033","doi":"10.1038/s41467-023-36590-1","title":"Structure and mechanism of a tripartite ATP-independent periplasmic TRAP transporter","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre for Antibiotic Resistance Research, University of Gothenburg; Maurice Wilkins Centre for Molecular Biodiscovery; Biomolecular Interaction Centre, University of Canterbury; Stockholms Universitet; Kempestiftelserna; Göteborgs Universitet; Umeå Universitet; Ministero dell’Istruzione, dell’Università e della Ricerca; Knut och Alice Wallenbergs Stiftelse; Australian Cancer Research Foundation; University of Otago; Royal Society Te Apārangi; Ministry of Business, Innovation and Employment; Kempe Foundation; Royal Society; Canterbury Medical Research Foundation; University of Lethbridge; VINNOVA; Australian Nuclear Science and Technology Organisation; Australian Institute of Nuclear Science and Engineering; Science for Life Laboratory; Australian Synchrotron; Marsden Fund; Harvard University","keywords":"Periplasmic space; Transporter; Transport protein; ATP-binding cassette transporter; Biochemistry; Chemistry; Biophysics; Docking (animal); Membrane transport protein; Binding site; Sialic acid; Biology; Escherichia coli","score_opus":0.010860932242118263,"score_gpt":0.2584791863051148,"score_spread":0.24761825406299653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4322490033","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959789,0.0016297095,0.000043557597,0.0017629588,0.00012279884,0.0001486978,0.00016992567,0.000025564794,0.00011787036],"genre_scores_gemma":[0.99584657,0.0024356237,0.0010647406,0.00013450235,0.00003135109,0.000011396614,0.0003540038,0.000013413826,0.00010838423],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994332,0.000032959197,0.00016064227,0.00017809262,0.0000665488,0.00012855239],"domain_scores_gemma":[0.9990143,0.000009495945,0.00006196821,0.0008224347,0.000055836834,0.000035966234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007790686,0.000096634714,0.00011772263,0.00006733505,0.000078267185,0.000009008287,0.00043001038,0.0005451731,0.000010687621],"category_scores_gemma":[0.000014291777,0.000088615234,0.00005042165,0.00016599717,0.00012395387,0.0000018831811,0.00017987184,0.00028346456,0.0000017130943],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019019904,0.000021576432,0.00037947443,0.000008354139,0.000036671576,4.0433682e-7,0.000102646074,0.0000014741079,0.99361295,0.0042782184,0.00026942694,0.0012698027],"study_design_scores_gemma":[0.000692376,0.00021966532,0.021796526,0.000013920846,0.000051796265,0.000023035587,0.00014368627,0.00019056813,0.86379075,0.0011665386,0.111687124,0.00022398359],"about_ca_topic_score_codex":0.0000055325054,"about_ca_topic_score_gemma":0.00027004068,"teacher_disagreement_score":0.12982215,"about_ca_system_score_codex":0.0000035497062,"about_ca_system_score_gemma":0.000029672896,"threshold_uncertainty_score":0.42048743},"labels":[],"label_agreement":null},{"id":"W4322758705","doi":"10.1080/15476286.2023.2179582","title":"Hfq protein and GcvB small RNA tailoring of <i>oppA</i> target mRNA to levels allowing translation activation by MicF small RNA in <i>Escherichia coli</i>","year":2023,"lang":"en","type":"article","venue":"RNA Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Translation (biology); RNA; Small RNA; Cell biology; Escherichia coli; Transfer RNA; RNA-binding protein; Messenger RNA; Gene; Genetics","score_opus":0.023911256292781662,"score_gpt":0.23913095713043375,"score_spread":0.2152197008376521,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4322758705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952092,0.00033268874,0.0020366467,0.0013566429,0.00017068564,0.0005745886,0.00008481123,0.000035984696,0.00019872867],"genre_scores_gemma":[0.99404335,0.00020748234,0.004860597,0.00028575427,0.00012130769,0.00007155674,0.00025570378,0.00003343727,0.000120825665],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984311,0.00011199123,0.00042594608,0.0005426058,0.000057308385,0.00043107505],"domain_scores_gemma":[0.99943346,0.000023214294,0.00014117551,0.00026068883,0.000058595055,0.0000828608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033243065,0.00023802032,0.00031919856,0.00015426478,0.000056689863,0.00001581767,0.00023407319,0.00059183175,0.0000065880517],"category_scores_gemma":[0.00008012524,0.00024117032,0.000064896536,0.0003550816,0.0000958704,0.000005732022,0.00015142007,0.00017770205,0.00000465125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014758503,0.000040157807,0.00043559322,0.000035968806,0.000037037138,0.0000013436453,0.00008488763,0.000033171254,0.9870665,0.000052762003,0.0001159077,0.011949092],"study_design_scores_gemma":[0.00073834026,0.00053124124,0.0016904407,0.000036607576,0.000009035065,0.0000013719239,0.000051842115,0.00008940867,0.98179185,0.00025076,0.014545378,0.00026369575],"about_ca_topic_score_codex":0.00014757738,"about_ca_topic_score_gemma":0.00016125376,"teacher_disagreement_score":0.0144294705,"about_ca_system_score_codex":0.00001806623,"about_ca_system_score_gemma":0.000060099326,"threshold_uncertainty_score":0.983464},"labels":[],"label_agreement":null},{"id":"W4328054256","doi":"10.1098/rsob.220373","title":"The lipid linked oligosaccharide polymerase Wzy and its regulating co-polymerase, Wzz, from enterobacterial common antigen biosynthesis form a complex","year":2023,"lang":"en","type":"article","venue":"Open Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research; Medical Research Council; Diamond Light Source; Wellcome Trust","keywords":"Biology; Polymerase; Bacterial outer membrane; Biochemistry; Transmembrane domain; Transmembrane protein; Microbiology; Gene; Escherichia coli","score_opus":0.03139650593480055,"score_gpt":0.30169651788148033,"score_spread":0.2703000119466798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4328054256","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948543,0.0005458436,0.000008656943,0.0025549352,0.00050475873,0.0004987915,0.0007126289,0.000046962625,0.00027315813],"genre_scores_gemma":[0.993958,0.0023140672,0.00018316676,0.00063321687,0.0006538315,0.00005801359,0.0019003624,0.000039640134,0.00025971723],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980146,0.00020344333,0.00045199867,0.00067256606,0.00006799284,0.0005893476],"domain_scores_gemma":[0.9989031,0.00010367123,0.00022650094,0.0006006487,0.000046268484,0.00011978882],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003372044,0.00030501894,0.00040000913,0.00006904,0.0005150093,0.00019265851,0.0009323551,0.0005495832,0.000093018265],"category_scores_gemma":[0.00009386377,0.00023144315,0.00008806064,0.00016440437,0.00029585362,0.000008843286,0.0012098536,0.00014744292,0.00005284585],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033068916,0.000027249002,0.00259795,0.00000409847,0.00012730133,0.0000028593638,0.000030593746,1.8981177e-7,0.9761891,0.00024441915,0.00128368,0.01916192],"study_design_scores_gemma":[0.0009071002,0.00039516954,0.0145809725,0.000015888585,0.000022711847,0.000015114631,0.0000645108,0.00013755051,0.85968405,0.00025750187,0.12359321,0.00032621983],"about_ca_topic_score_codex":0.00052807044,"about_ca_topic_score_gemma":0.00056135375,"teacher_disagreement_score":0.12230953,"about_ca_system_score_codex":0.000010339532,"about_ca_system_score_gemma":0.000057342764,"threshold_uncertainty_score":0.94379777},"labels":[],"label_agreement":null},{"id":"W4363672576","doi":"10.1101/2023.04.10.536232","title":"Nutrient Limitation Sensitizes <i>Pseudomonas aeruginosa</i> to Vancomycin","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Pseudomonas aeruginosa; Vancomycin; Microbiology; Peptidoglycan; Antibiotics; Bacteria; Mutant; Biology; Antibiotic resistance; Siderophore; Genetics; Staphylococcus aureus; Gene","score_opus":0.013822273828035109,"score_gpt":0.21953551028637058,"score_spread":0.20571323645833547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4363672576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914123,0.0004717434,0.0028605915,0.0013616104,0.0022904358,0.0008844886,0.0003965754,0.0003150898,0.000007194349],"genre_scores_gemma":[0.98836,0.0008411086,0.008471663,0.0006639139,0.0012143429,0.00021603325,0.000009132002,0.00018204184,0.000041767664],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997044,0.0001104718,0.000526995,0.0013806236,0.00027642376,0.00066146435],"domain_scores_gemma":[0.9974232,0.000022747648,0.0002765578,0.0015226998,0.0004571552,0.0002976647],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00037604687,0.00059204386,0.00049287046,0.00026696193,0.00013355342,0.00014966523,0.0005917559,0.0012344368,0.0000058167234],"category_scores_gemma":[0.0002570631,0.0006596008,0.00020022447,0.0004077239,0.00010917367,0.0000041951307,0.0013002247,0.00046819192,0.00024404573],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000680404,0.00007954087,0.0004834485,0.00010024564,0.00012313882,0.000029707355,0.0000040631885,0.000095474716,0.9936507,0.00021145635,0.0051487456,0.000005487568],"study_design_scores_gemma":[0.00041020464,0.00018560092,0.012280058,0.000121359335,0.00006212242,4.2300577e-8,0.0000035495102,0.00003007204,0.91350186,0.0000077292325,0.07264091,0.0007564949],"about_ca_topic_score_codex":0.000033506953,"about_ca_topic_score_gemma":0.00001638615,"teacher_disagreement_score":0.080148794,"about_ca_system_score_codex":0.000084762,"about_ca_system_score_gemma":0.00034111715,"threshold_uncertainty_score":0.9995855},"labels":[],"label_agreement":null},{"id":"W4364353336","doi":"10.1073/pnas.2212664120","title":"Mechanism of secretion of TcpF by the <i>Vibrio cholerae</i> toxin-coregulated pilus","year":2023,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Simon Fraser University; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Pilus; Vibrio cholerae; Periplasmic space; Pilin; Secretion; Bacterial outer membrane; Microbiology; Cholera toxin; Biology; Cell biology; Escherichia coli; Bacteria; Biochemistry","score_opus":0.018998820746554713,"score_gpt":0.26012251218689303,"score_spread":0.24112369144033832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4364353336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970461,0.00013078058,0.0000023101848,0.002098997,0.00003051124,0.00012652576,0.000047194415,0.000004725424,0.00051284296],"genre_scores_gemma":[0.99937564,0.00018595731,0.00016374381,0.00009763123,0.00004051202,0.000004190995,0.000002161032,0.000003724659,0.00012645377],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990194,0.000006437574,0.0002747529,0.00017646866,0.0004098851,0.00011306249],"domain_scores_gemma":[0.9993377,0.000015207157,0.00040054572,0.000017160903,0.00021540387,0.000014029561],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006978621,0.000072127754,0.0001190615,0.000064393724,0.000070808805,0.0000059399845,0.00065790466,0.00017666799,0.0000045391616],"category_scores_gemma":[0.00010940077,0.00004371193,0.00006839114,0.0005578378,0.0007277196,0.0000074086706,0.00018269347,0.00007321807,3.6249853e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017368375,0.00001648379,0.00018438608,0.000020842928,0.000015092166,8.072753e-10,0.00003262302,0.00001441939,0.98695517,0.011680868,0.00082245906,0.00024031293],"study_design_scores_gemma":[0.00013081456,0.00013572392,0.0054598725,0.000022438751,0.000008367031,0.0000029309303,0.000057609446,0.00024958604,0.98107594,0.012094145,0.00071528356,0.000047271555],"about_ca_topic_score_codex":0.0000058856526,"about_ca_topic_score_gemma":1.1217865e-7,"teacher_disagreement_score":0.0058791856,"about_ca_system_score_codex":0.000004926358,"about_ca_system_score_gemma":0.000023875344,"threshold_uncertainty_score":0.26813132},"labels":[],"label_agreement":null},{"id":"W4364354280","doi":"10.1371/journal.pone.0283990","title":"Enabling low-cost and robust essentiality studies with high-throughput transposon mutagenesis (HTTM)","year":2023,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé","keywords":"Transposon mutagenesis; Transposable element; Mutagenesis; Biology; Sleeping Beauty transposon system; Computational biology; Protocol (science); Throughput; Genetics; Computer science; Gene; Genome; Mutation; Medicine","score_opus":0.04803263751483923,"score_gpt":0.24102400098998167,"score_spread":0.19299136347514245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4364354280","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99758637,0.00090538006,0.0001311372,0.00090369914,0.00006866998,0.00026675023,0.000052499938,0.0000667197,0.00001878514],"genre_scores_gemma":[0.9908121,0.0065948004,0.0017306806,0.00009491988,0.00024364704,0.00004698656,0.00015424652,0.000031288262,0.0002912818],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988894,0.000035885863,0.00017361085,0.00046035516,0.00013468199,0.0003060771],"domain_scores_gemma":[0.9994539,0.000012787666,0.000058675785,0.00031256163,0.0001025535,0.00005954644],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013664889,0.00017905861,0.00026218436,0.0000561412,0.00011959795,0.00002836035,0.00012686096,0.00021688256,0.000009352805],"category_scores_gemma":[0.00003910577,0.00015157438,0.000032252163,0.00020554464,0.0001891456,0.0000035795242,0.00012284015,0.000084823645,0.000010369535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000113239475,0.00018611479,0.0011564125,0.00017166558,0.00046229886,0.000011130428,0.000055005807,0.000044260032,0.9965351,0.00003214041,0.00007368302,0.0011589347],"study_design_scores_gemma":[0.0005952949,0.00028098025,0.0041226097,0.0000756308,0.00015294873,0.0000031090278,0.00014723957,0.000024810537,0.9937964,0.00004856491,0.0005213852,0.00023098836],"about_ca_topic_score_codex":0.000028768134,"about_ca_topic_score_gemma":0.0001239633,"teacher_disagreement_score":0.0067742094,"about_ca_system_score_codex":0.000008633718,"about_ca_system_score_gemma":0.000027861925,"threshold_uncertainty_score":0.6181024},"labels":[],"label_agreement":null},{"id":"W4366090975","doi":"10.1101/2023.04.14.536918","title":"Differentiating <i>Bacillus subtilis</i> incorporates valine and methionine carbon into the backbone of specific fatty acids","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada","keywords":"Valine; Bacillus subtilis; Biochemistry; Methionine; Fatty acid; Leucine; Amino acid; Metabolism; Metabolite; Chemistry; Biosynthesis; Biology; Stereochemistry; Bacteria; Gene","score_opus":0.015123477341302895,"score_gpt":0.21383334230027864,"score_spread":0.19870986495897575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366090975","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933084,0.004017754,0.00041666353,0.00053356175,0.0009958826,0.00047197813,0.00016065336,0.00009197062,0.0000030982483],"genre_scores_gemma":[0.9910396,0.0045918347,0.0035075154,0.000060684073,0.00059193897,0.00007302009,0.0000069855196,0.00011895108,0.000009478232],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99747115,0.00018175956,0.000666312,0.0010152537,0.00024385743,0.00042164404],"domain_scores_gemma":[0.9974676,0.00004131923,0.0005927062,0.0013818988,0.00039177336,0.00012470092],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00069944223,0.00053646305,0.0006032781,0.00015025366,0.00013662016,0.00009586752,0.0006366833,0.0010593456,0.0000059745835],"category_scores_gemma":[0.00018499802,0.00044429756,0.00014640365,0.00035645344,0.00045674513,0.000003788085,0.0017847774,0.00060142315,0.0000035988098],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053055064,0.000053261585,0.0075907554,0.00018741615,0.00018390895,0.0000057023326,0.000011777886,0.000014540954,0.9917237,0.00010848633,0.000048963964,0.000018411934],"study_design_scores_gemma":[0.00040724463,0.00015889242,0.045530893,0.00011401369,0.0000945315,4.2989743e-8,0.000008690399,0.00012628954,0.9501119,0.00001855123,0.0029607853,0.00046814303],"about_ca_topic_score_codex":0.0001201709,"about_ca_topic_score_gemma":0.00002729012,"teacher_disagreement_score":0.041611798,"about_ca_system_score_codex":0.000035416702,"about_ca_system_score_gemma":0.00018598264,"threshold_uncertainty_score":0.99980086},"labels":[],"label_agreement":null},{"id":"W4366262960","doi":"10.1016/j.nbt.2023.04.005","title":"ReViTA: A novel in vitro transcription system to study gene regulation","year":2023,"lang":"en","type":"article","venue":"New Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Agencia Estatal de Investigación; Generalitat de Catalunya; Agència de Gestió d'Ajuts Universitaris i de Recerca; Ministerio de Asuntos Económicos y Transformación Digital, Gobierno de España; European Regional Development Fund; Federación Española de Enfermedades Raras; European Social Fund; Centres de Recerca de Catalunya","keywords":"Repressor lexA; E-box; General transcription factor; Transcription (linguistics); Promoter; Biology; RNA polymerase II; Repressor; Gene; TAF2; Response element; Molecular biology; Gene expression; Transcription factor II D; Transcription factor; Genetics","score_opus":0.014615377757568734,"score_gpt":0.24135344347756885,"score_spread":0.2267380657200001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366262960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99151045,0.00011777132,0.0036145174,0.003249718,0.00039369104,0.0007876677,0.000022504877,0.0002617,0.00004198514],"genre_scores_gemma":[0.996382,0.00007692935,0.0027964737,0.000108587556,0.00018758615,0.00006673573,0.00011382574,0.00003282913,0.00023504045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984444,0.00004088344,0.0003560353,0.0006472853,0.00010807684,0.00040331954],"domain_scores_gemma":[0.99918985,0.0000042323377,0.000069809794,0.00062716106,0.00003603992,0.000072874725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002588002,0.00020295926,0.00026198916,0.00046623452,0.000056878132,0.000017107106,0.0003483091,0.00086495286,0.000005306677],"category_scores_gemma":[0.000054059754,0.00020766517,0.000059975082,0.0009932828,0.00004788683,0.0000027982296,0.00020156438,0.00017150142,0.00008104482],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018044842,0.00009523777,0.00011138168,0.000010245797,0.000025395073,0.000008826205,0.000043282012,0.00003529671,0.9790858,0.00022656715,0.0003069048,0.019870592],"study_design_scores_gemma":[0.0011858931,0.0007415372,0.006296891,0.000011472806,0.000015009495,0.000033818134,0.00025165052,0.00009596503,0.9771371,0.00004105099,0.013969484,0.00022014703],"about_ca_topic_score_codex":0.00009663965,"about_ca_topic_score_gemma":0.0001528142,"teacher_disagreement_score":0.019650446,"about_ca_system_score_codex":0.000046196314,"about_ca_system_score_gemma":0.000049563274,"threshold_uncertainty_score":0.846834},"labels":[],"label_agreement":null},{"id":"W4366977555","doi":"10.1016/j.bbrc.2023.04.039","title":"Phosphorylation-mediated regulation of the Bacillus anthracis phosphoglycerate mutase by the Ser/Thr protein kinase PrkC","year":2023,"lang":"en","type":"article","venue":"Biochemical and Biophysical Research Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Science and Engineering Research Board","keywords":"Phosphoglycerate mutase; Bacillus anthracis; Phosphorylation; Biology; Spore germination; Biochemistry; Kinase; Threonine; Glycolysis; Phosphoglycerate kinase; Cell biology; Enzyme; Serine; Spore; Bacteria; Microbiology; Genetics","score_opus":0.030626558973621463,"score_gpt":0.3089418989511938,"score_spread":0.2783153399775723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366977555","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98735386,0.0008190721,0.000012521195,0.010883343,0.000028658735,0.00053724914,0.00022637498,0.000021353799,0.000117584146],"genre_scores_gemma":[0.9975612,0.0010744245,0.00010821769,0.000059940594,0.00005418872,0.00011688842,0.0005189709,0.000014353446,0.0004917981],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986081,0.00024803873,0.00024248747,0.00029456278,0.00029659143,0.0003102194],"domain_scores_gemma":[0.9981037,0.00013178967,0.000084486,0.0013229778,0.0002733869,0.00008368901],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000472282,0.00012909874,0.00012667238,0.00003772818,0.0004525298,0.000039663195,0.00091790117,0.00024065527,0.000011289499],"category_scores_gemma":[0.00054315315,0.000078986806,0.00007923969,0.00085127825,0.001728315,0.0000047803496,0.0010649707,0.0003448288,0.000019242763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000069025424,0.000121657584,0.00005709727,0.000015316857,0.000021496127,1.316779e-7,0.00002300469,6.041454e-7,0.9926212,0.00072490866,0.0038129883,0.0025325853],"study_design_scores_gemma":[0.00024998235,0.00013839098,0.0029822998,0.000023860264,0.0000075838284,0.0000015413432,0.00006251781,0.0006961377,0.9665437,0.0007306892,0.028457722,0.00010561838],"about_ca_topic_score_codex":0.000091385504,"about_ca_topic_score_gemma":0.000013334524,"teacher_disagreement_score":0.026077528,"about_ca_system_score_codex":0.000015935755,"about_ca_system_score_gemma":0.000089348236,"threshold_uncertainty_score":0.6368049},"labels":[],"label_agreement":null},{"id":"W4372183979","doi":"10.1093/femsle/fnad039","title":"<i>Bacillus subtilis</i> small replicative plasmid collection incorporating five distinct origins of replication and compatible with Golden Gate DNA assembly","year":2023,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bacillus subtilis; Plasmid; Replication (statistics); DNA replication; Biology; DNA; Genetics; Bacteria; Virology","score_opus":0.010656854001428349,"score_gpt":0.21544715914862417,"score_spread":0.20479030514719582,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4372183979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973348,0.00003844953,0.0003709507,0.0015159884,0.00011710841,0.00036596274,0.00015368655,0.0000522912,0.000050790954],"genre_scores_gemma":[0.99719423,0.00006854346,0.00097142527,0.00032466836,0.000071994866,0.000050474897,0.0011884636,0.000024445064,0.000105773666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99863183,0.00008872852,0.00029449497,0.0006859069,0.00003318234,0.00026582845],"domain_scores_gemma":[0.99895185,0.0000321223,0.00032979017,0.00054344145,0.00009884826,0.0000439588],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022719575,0.00020198857,0.00026067722,0.00010706993,0.00011900217,0.00001521212,0.00018808225,0.00027041495,0.0000018441096],"category_scores_gemma":[0.000056132783,0.00017732172,0.000043197622,0.00033527534,0.00040253962,0.0000037597067,0.00016940903,0.00012951125,0.0000067204255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016139589,0.000023722625,0.0054501314,0.00002036588,0.00007933745,0.0000029348796,0.00007260253,0.0000350784,0.9919836,0.000047553705,0.0016603074,0.00046295763],"study_design_scores_gemma":[0.00070073147,0.0007783092,0.010836672,0.000023246792,0.000028895043,0.00008223954,0.00008967685,0.00008419237,0.97906864,0.00001645925,0.008051766,0.00023918206],"about_ca_topic_score_codex":0.00015469306,"about_ca_topic_score_gemma":0.00037187056,"teacher_disagreement_score":0.012914983,"about_ca_system_score_codex":0.000039288207,"about_ca_system_score_gemma":0.000051679737,"threshold_uncertainty_score":0.723097},"labels":[],"label_agreement":null},{"id":"W4376274094","doi":"10.1007/s13205-023-03607-x","title":"Genome mining of Pseudomonas spp. hints towards the production of under-pitched secondary metabolites","year":2023,"lang":"en","type":"article","venue":"3 Biotech","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Pseudomonas chlororaphis; Ectoine; Betaine; Trehalose; Pseudomonas fluorescens; Metabolome; Strain (injury); Biology; Microbiology; Osmoprotectant; Pseudomonas; Biochemistry; Rhamnolipid; Metabolomics; Chemistry; Food science; Pseudomonas aeruginosa; Bacteria; Metabolite; Genetics; Amino acid; Proline","score_opus":0.019830414520204852,"score_gpt":0.24590718186047586,"score_spread":0.22607676734027102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4376274094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99651897,0.0009037413,0.00004402744,0.0015909828,0.00040484572,0.00018494735,0.000039498198,0.000027471327,0.0002855001],"genre_scores_gemma":[0.99734527,0.000999011,0.0007943419,0.000047151047,0.00019293086,0.000009712399,0.000089863875,0.000018973993,0.00050273404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904287,0.000044895387,0.00028528346,0.00029981922,0.0001182607,0.00020889347],"domain_scores_gemma":[0.99921286,0.000009326675,0.00015885502,0.00049557904,0.00009684376,0.000026542102],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034230345,0.00013297211,0.00020273338,0.000089249836,0.000050610757,0.000007854247,0.00030420037,0.00033297637,0.000030935702],"category_scores_gemma":[0.000118329,0.000097866774,0.00009845732,0.00035714154,0.0002338635,0.000002246227,0.00024539878,0.00011143969,0.000008591481],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035063702,0.000025835614,0.00008835957,0.000030149182,0.00007391051,4.6699486e-7,0.000049158694,0.000014953393,0.9924944,0.00016115545,0.00021810747,0.006808436],"study_design_scores_gemma":[0.00014488715,0.00016656877,0.018612502,0.000008738556,0.000025404506,0.000008860975,0.00018985658,0.000005546759,0.9592177,0.00024531406,0.02126713,0.000107463944],"about_ca_topic_score_codex":0.00003139174,"about_ca_topic_score_gemma":0.000015626587,"teacher_disagreement_score":0.033276677,"about_ca_system_score_codex":0.000005889419,"about_ca_system_score_gemma":0.00008840088,"threshold_uncertainty_score":0.39908913},"labels":[],"label_agreement":null},{"id":"W4377564504","doi":"10.1099/mgen.0.001015","title":"Expanded roles of lactate-sensing LldR in transcription regulation of the Escherichia coli K-12 genome: lactate utilisation and acid resistance","year":2023,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Lotte Foundation; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; Meiji University; Sumitomo Foundation","keywords":"Lactic acid; Operon; Bacteria; Escherichia coli; Biochemistry; Biology; Lactate dehydrogenase; Gene; Chemistry; Genetics; Enzyme","score_opus":0.00962300492091871,"score_gpt":0.20058496789134433,"score_spread":0.1909619629704256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377564504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990489,0.00020738489,0.0001124974,0.00023116234,0.00011736767,0.00020281688,0.00004777351,0.0000074285813,0.000024666748],"genre_scores_gemma":[0.9986802,0.0003939563,0.0006397642,0.000026647593,0.00003911425,0.0000015754761,0.00007963671,0.000015049192,0.00012407546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926543,0.0000714177,0.00027636476,0.00019937499,0.000044840886,0.00014254238],"domain_scores_gemma":[0.9995849,0.0000051593156,0.00015083206,0.00019910574,0.000043976164,0.000015999318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021707635,0.000099672085,0.00014533692,0.000059027483,0.000039717208,0.000009797269,0.00010387483,0.00019766304,0.0000019078198],"category_scores_gemma":[0.000021301666,0.000092721224,0.000046565656,0.00015461928,0.00013067739,0.0000033552692,0.00006710702,0.00006223145,5.677478e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040187544,0.000013375367,0.00018115577,0.000025688927,0.000012619042,2.48695e-7,0.00029213034,0.00012347318,0.9979093,0.000012602954,0.000018785073,0.0010087335],"study_design_scores_gemma":[0.0005047904,0.000054005894,0.051540542,0.000015654115,0.000011679268,0.0000017098508,0.00011912363,0.00009929115,0.944102,0.00010611325,0.0033555871,0.000089501664],"about_ca_topic_score_codex":0.000017736476,"about_ca_topic_score_gemma":0.00081150804,"teacher_disagreement_score":0.05380731,"about_ca_system_score_codex":0.000020685453,"about_ca_system_score_gemma":0.00004942413,"threshold_uncertainty_score":0.37810618},"labels":[],"label_agreement":null},{"id":"W4378640499","doi":"10.1093/nar/gkad457","title":"DUF2285 is a novel helix-turn-helix domain variant that orchestrates both activation and antiactivation of conjugative element transfer in proteobacteria","year":2023,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Marsden Fund; Cancer Research Society; Australian Government; Australian Nuclear Science and Technology Organisation; Curtin University of Technology; University of Otago; American Philological Association","keywords":"Horizontal gene transfer; Biology; Quorum sensing; Gene; Helix (gastropod); Protein domain; Genetics; Activator (genetics); PAS domain; Helix-turn-helix; Cell biology; Transcription factor; DNA-binding protein; Phylogenetics","score_opus":0.04553171746134332,"score_gpt":0.3169794362872112,"score_spread":0.2714477188258679,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378640499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99634737,0.000029077486,0.0009111872,0.0017174338,0.00003906143,0.0007299272,0.000082272505,0.000014809183,0.00012885354],"genre_scores_gemma":[0.99836165,0.00047263203,0.00073479343,0.000050613966,0.000056588007,0.00008115035,0.00012479389,0.00002599182,0.00009176253],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984186,0.00014634052,0.00027361006,0.00045706175,0.00029097372,0.0004133833],"domain_scores_gemma":[0.9994155,0.000035187502,0.0000535601,0.00028230392,0.00015265684,0.000060758375],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00087506534,0.00015831382,0.00020132348,0.00026616547,0.00008758472,0.00004402266,0.00020042398,0.00036975456,0.000046231256],"category_scores_gemma":[0.000082180624,0.00014379401,0.000039382503,0.00052377814,0.0002726302,0.00001314246,0.00017684182,0.0002574492,0.0000052192045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003344547,0.00010473526,0.0020230915,0.00006071505,0.000043725784,0.000002237369,0.00045575757,0.00000175253,0.994201,0.00054586213,0.00011231822,0.0021143705],"study_design_scores_gemma":[0.001058628,0.0006081776,0.075991765,0.000058206653,0.0000035065552,0.000003982287,0.0006340496,0.00011619313,0.9177391,0.00049721374,0.0031442323,0.00014496817],"about_ca_topic_score_codex":0.00012662861,"about_ca_topic_score_gemma":0.00004267554,"teacher_disagreement_score":0.076461904,"about_ca_system_score_codex":0.000033152843,"about_ca_system_score_gemma":0.00012728837,"threshold_uncertainty_score":0.58637494},"labels":[],"label_agreement":null},{"id":"W4378953821","doi":"10.15252/embj.2022112168","title":"Cell envelope growth of Gram‐negative bacteria proceeds independently of cell wall synthesis","year":2023,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"European Research Council; Fonds de Recherche du Québec - Santé; European Commission; Natural Sciences and Engineering Research Council of Canada; Agence Nationale de la Recherche; Volkswagen Foundation","keywords":"Cell envelope; Cell wall; Peptidoglycan; Lysis; Bacterial cell structure; Cell growth; Cell; Bacteria; Cell biology; Bacterial growth; Elongation; Biology; Biophysics; Escherichia coli; Chemistry; Biochemistry; Materials science; Genetics","score_opus":0.009354193763393127,"score_gpt":0.21479151954085376,"score_spread":0.20543732577746063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378953821","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99824786,0.00012325849,0.000037733345,0.00036735987,0.00020198699,0.000115797375,0.000023120478,0.00000829095,0.0008745641],"genre_scores_gemma":[0.99783546,0.001045457,0.0004908513,0.000042228483,0.00014897899,0.000006006848,0.000009041732,0.000022481809,0.00039947915],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896806,0.00008919807,0.00036571,0.00015054819,0.00016725277,0.00025919836],"domain_scores_gemma":[0.999103,0.00003131692,0.00035946607,0.00023439399,0.0002119701,0.00005982312],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004523287,0.00015127922,0.00022349767,0.000098505036,0.00008304003,0.000021256108,0.0005369155,0.00020453356,0.00006461401],"category_scores_gemma":[0.00009401644,0.00010392751,0.0001266738,0.00022949104,0.0001673853,0.0000035664095,0.00021132345,0.00020369214,0.000014105949],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011325625,0.00006283849,0.0005867132,0.00004034965,0.000059296297,0.0000029184957,0.00017457212,0.0000036120819,0.9974333,0.0000295194,0.00096230535,0.00053129415],"study_design_scores_gemma":[0.00032628875,0.00032224358,0.006268354,0.00001915025,0.000043012406,0.000042027907,0.00026003143,0.0000071741965,0.9909451,0.0006733358,0.000972263,0.00012100333],"about_ca_topic_score_codex":0.000015116907,"about_ca_topic_score_gemma":0.000004883009,"teacher_disagreement_score":0.006488209,"about_ca_system_score_codex":0.000008510833,"about_ca_system_score_gemma":0.00011745851,"threshold_uncertainty_score":0.4238041},"labels":[],"label_agreement":null},{"id":"W4379365170","doi":"10.1016/j.mib.2023.102326","title":"Bacterial growth — from physical principles to autolysins","year":2023,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Volkswagen Foundation","keywords":"Autolysin; Peptidoglycan; Biology; Cell envelope; Intracellular; Bacteria; Bacterial cell structure; Bacterial growth; Cell biology; Cell wall; Cell growth; Cell; RNA; Microbiology; Biophysics; Biochemistry; Escherichia coli; Genetics; Gene","score_opus":0.08000351066637885,"score_gpt":0.3597814432743927,"score_spread":0.27977793260801387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4379365170","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007378856,0.9749803,0.00003188501,0.00008355552,0.014179001,0.0009757493,0.0022909138,0.00006593086,0.000013794284],"genre_scores_gemma":[0.00004883561,0.982558,0.00015748515,0.000015897014,0.003954464,0.00018526451,0.0129352445,0.000089850575,0.000054927183],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99719554,0.00026912102,0.0007281178,0.0011829466,0.0000486728,0.0005756191],"domain_scores_gemma":[0.9988742,0.000047811798,0.000276099,0.0006378899,0.00005457675,0.00010945664],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00014345851,0.0005827185,0.0013795568,0.00029238703,0.000046928653,0.000034733428,0.0007953714,0.0015165638,0.000025744603],"category_scores_gemma":[0.00013099758,0.0005095585,0.00040532506,0.0003713598,0.00014916742,0.0000017895954,0.0010558655,0.00061106443,0.0004615695],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011542555,0.0005154029,0.000027751248,0.005869561,0.0004271141,0.00000366888,0.000070376766,0.0000019656304,0.24028009,0.0005107471,0.013482065,0.7386958],"study_design_scores_gemma":[0.00027261226,0.00023075614,0.000018045937,0.0021295825,0.000059296395,0.000013514363,0.000002927733,7.9211793e-7,0.0011923502,0.000045720768,0.99549043,0.0005439509],"about_ca_topic_score_codex":0.000021544423,"about_ca_topic_score_gemma":0.000028937646,"teacher_disagreement_score":0.9820084,"about_ca_system_score_codex":0.000060754704,"about_ca_system_score_gemma":0.00027349728,"threshold_uncertainty_score":0.9997797},"labels":[],"label_agreement":null},{"id":"W4379600446","doi":"10.1021/acsinfecdis.3c00167","title":"Nutrient Limitation Sensitizes <i>Pseudomonas aeruginosa</i> to Vancomycin","year":2023,"lang":"en","type":"article","venue":"ACS Infectious Diseases","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Pseudomonas aeruginosa; Microbiology; Antibiotics; Peptidoglycan; Vancomycin; Bacteria; Mutant; Biology; Siderophore; Glycopeptide; Antibiotic resistance; Biochemistry; Genetics; Staphylococcus aureus; Gene","score_opus":0.0073645403966587425,"score_gpt":0.23569597507058013,"score_spread":0.2283314346739214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4379600446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975038,0.00016293032,0.0002486065,0.0006144376,0.00047393804,0.00026265805,0.000082813276,0.00020238223,0.0004484051],"genre_scores_gemma":[0.9973917,0.00045886598,0.000073785006,0.0008597921,0.0004025402,0.00006246025,0.0003873282,0.000027390175,0.00033611912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901736,0.000040377206,0.00016232736,0.0003723596,0.00010799424,0.00029959177],"domain_scores_gemma":[0.9993559,0.000021133752,0.000048393948,0.0003425103,0.00009533356,0.00013671308],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059716596,0.0001628425,0.00013688186,0.0001210226,0.00011755641,0.00003924003,0.00012212402,0.00016059139,0.0000072383805],"category_scores_gemma":[0.00016999626,0.00016232351,0.00008001164,0.00036094972,0.000056018464,0.0000029012037,0.00019357052,0.00005716034,0.00026299967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058673864,0.000105534666,0.008209826,0.000017089806,0.000050953888,0.000013495454,0.000025722504,0.00016706451,0.9574479,0.00044335533,0.029044744,0.00441564],"study_design_scores_gemma":[0.0010361028,0.0008107425,0.046455998,0.000022027187,0.000067385845,0.000031041487,0.00009862806,0.00002033059,0.741893,0.0018283789,0.20719226,0.0005440926],"about_ca_topic_score_codex":0.00001458494,"about_ca_topic_score_gemma":0.00004934195,"teacher_disagreement_score":0.21555488,"about_ca_system_score_codex":0.000016687603,"about_ca_system_score_gemma":0.000048952323,"threshold_uncertainty_score":0.66193604},"labels":[],"label_agreement":null},{"id":"W4382010927","doi":"10.1128/mra.00186-23","title":"Profiling of the Klebsiella pneumoniae Phosphoproteome under Iron-Limited and Iron-Replete Conditions","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Klebsiella pneumoniae; Biology; Bacterial protein; Microbiology; Computational biology; Chemistry; Bacteria; Biochemistry; Escherichia coli","score_opus":0.010186270285736621,"score_gpt":0.22939189750588138,"score_spread":0.21920562722014475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382010927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970227,0.0003064342,0.000015265809,0.000991112,0.00017922587,0.00038221575,0.00091065635,0.00002706568,0.00016532594],"genre_scores_gemma":[0.99539,0.00019753915,0.00009921977,0.00055702566,0.00006922868,0.0000366197,0.0022959493,0.000023796589,0.0013306503],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998812,0.00008044475,0.0002723719,0.00042448734,0.000051723644,0.00035893117],"domain_scores_gemma":[0.99927336,0.000012410558,0.0001521829,0.00046655,0.000057179714,0.000038307808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017172548,0.00018475477,0.00018789154,0.00006689804,0.00017721934,0.000010264464,0.00031027634,0.00035743488,0.000014957897],"category_scores_gemma":[0.000031765376,0.00014360566,0.000075182936,0.00024167671,0.0005012431,0.0000019117183,0.0005088451,0.00013953472,0.000017666318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035310455,0.000030398778,0.008295395,0.000019595467,0.000052608844,9.99352e-7,0.000023721037,0.000060758623,0.98983437,0.000045883175,0.0014943064,0.00010665732],"study_design_scores_gemma":[0.0008957956,0.0003988645,0.004592054,0.000030887673,0.000042841228,0.000056360757,0.0003123073,0.000024754665,0.80921626,0.00007011222,0.1840703,0.00028943075],"about_ca_topic_score_codex":0.000008181413,"about_ca_topic_score_gemma":0.000012187119,"teacher_disagreement_score":0.182576,"about_ca_system_score_codex":0.000011792401,"about_ca_system_score_gemma":0.000040993018,"threshold_uncertainty_score":0.5856069},"labels":[],"label_agreement":null},{"id":"W4384664778","doi":"10.1038/s42004-023-00953-y","title":"Roles of inter- and intramolecular tryptophan interactions in membrane-active proteins revealed by racemic protein crystallography","year":2023,"lang":"en","type":"article","venue":"Communications Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Fonds de recherche du Québec – Nature et technologies; Engineering and Physical Sciences Research Council; Research Councils UK; Biotechnology and Biological Sciences Research Council; Fonds de Recherche du Québec - Santé; Diamond Light Source; Wellcome Trust; Wellcome","keywords":"Intramolecular force; Tryptophan; Chemistry; Membrane protein; Stereochemistry; Membrane; Biochemistry; Amino acid","score_opus":0.009985886616601157,"score_gpt":0.25577735055639805,"score_spread":0.2457914639397969,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4384664778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971819,0.0006960168,0.00012175665,0.0008814533,0.000014494489,0.0003507881,0.00009079224,0.000030275358,0.0006325275],"genre_scores_gemma":[0.9967137,0.0011743344,0.0010514368,0.00002056508,0.000016488177,0.00022357846,0.0005419175,0.000019884434,0.00023807213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913514,0.00006600048,0.00029493085,0.00027195035,0.000052791314,0.00017921456],"domain_scores_gemma":[0.99871546,0.00001571622,0.00013629973,0.0010136927,0.000070756214,0.000048057947],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011214577,0.0001454877,0.00017591954,0.000080719255,0.00006546192,0.000015072212,0.00053689606,0.00019295512,0.000012615719],"category_scores_gemma":[0.00009961959,0.00015895815,0.000060958344,0.00034847882,0.00035383608,0.0000051905727,0.0005483686,0.00023766245,0.0000013368702],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050466,0.0001067133,0.00022300785,0.00005541707,0.000041635045,6.595674e-7,0.00006188029,0.0000012971916,0.99641323,0.000022206032,0.00014929942,0.0028741758],"study_design_scores_gemma":[0.00039635604,0.000052266572,0.00039053068,0.000072084746,0.000009676781,0.000008455563,0.00029477032,0.00006512785,0.9841978,0.00014639623,0.014213565,0.00015300066],"about_ca_topic_score_codex":0.000025888932,"about_ca_topic_score_gemma":0.00007948133,"teacher_disagreement_score":0.014064265,"about_ca_system_score_codex":0.000013602276,"about_ca_system_score_gemma":0.000042880554,"threshold_uncertainty_score":0.6482125},"labels":[],"label_agreement":null},{"id":"W4385652641","doi":"10.1016/j.jbc.2023.105146","title":"Dynamic players and intricate interactions: An integrated investigation of the Mla lipid transport system","year":2023,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Bacterial outer membrane; Inner membrane; Lipid bilayer; Phospholipid; Translocase of the outer membrane; Membrane; Membrane protein; Biophysics; Biology; Translocase of the inner membrane; Membrane transport protein; Cell biology; Chemistry; Biochemistry; Mitochondrial membrane transport protein; Escherichia coli","score_opus":0.01453222545014922,"score_gpt":0.23636689925324975,"score_spread":0.2218346738031005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385652641","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99925625,0.00012244044,0.00008027352,0.00025452708,0.00016939912,0.000052612962,0.00002466453,0.0000110357205,0.000028785014],"genre_scores_gemma":[0.999155,0.00035518422,0.0002522972,0.000028771621,0.00009607864,0.0000022286467,0.000050719056,0.000006132857,0.000053613545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926114,0.000045288874,0.0003625854,0.00014755635,0.00007066087,0.00011277668],"domain_scores_gemma":[0.9993414,0.000013643416,0.00031027992,0.00015744993,0.00011386642,0.0000633445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023166223,0.00010295631,0.00017332398,0.000029915906,0.00003918683,0.000007642778,0.00023482318,0.0002722874,0.000006023888],"category_scores_gemma":[0.00007863608,0.00006052007,0.000085179665,0.00018647169,0.00020906536,0.0000037579132,0.000060841303,0.0001987082,5.051767e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000088509914,0.000015068117,0.003938575,0.000030580086,0.000033606488,0.0000025998238,0.000013920529,0.000016918546,0.99468935,0.0000054011543,0.00005192123,0.0011135328],"study_design_scores_gemma":[0.00027453803,0.00027249762,0.023126574,0.00005173573,0.00002518741,0.00018157224,0.00034033656,0.00018207532,0.9727982,0.00003420674,0.002622158,0.000090911555],"about_ca_topic_score_codex":0.000003150793,"about_ca_topic_score_gemma":0.0000022751406,"teacher_disagreement_score":0.02189116,"about_ca_system_score_codex":0.00001719809,"about_ca_system_score_gemma":0.00005909801,"threshold_uncertainty_score":0.24679367},"labels":[],"label_agreement":null},{"id":"W4385783377","doi":"10.1101/2023.08.11.551218","title":"Heterogeneity of radial spokes structural components and associated enzymes in <i>Tetrahymena</i> cilia","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Tetrahymena; Cilium; Tetrahymena pyriformis; Enzyme; Component (thermodynamics); Biology; Chemistry; Cell biology; Biochemistry; Physics","score_opus":0.01511807787735358,"score_gpt":0.22232073273088043,"score_spread":0.20720265485352685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385783377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959815,0.0019210723,0.000015898073,0.00008654225,0.0008929999,0.0003790058,0.0006602751,0.00006189597,7.7489506e-7],"genre_scores_gemma":[0.99831337,0.00087720965,0.00045847267,0.00004686924,0.00018604133,0.00003315867,0.0000081914,0.000073299445,0.0000033771867],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99788606,0.00012837365,0.00052463904,0.00085064117,0.00017009916,0.0004401779],"domain_scores_gemma":[0.99867076,0.000017062084,0.00034759278,0.00069311674,0.00015301707,0.000118446485],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00033014145,0.0004174243,0.00055721035,0.00018116614,0.0000546135,0.000050915303,0.00041989694,0.0011253817,0.0000037638597],"category_scores_gemma":[0.00016158144,0.0004489358,0.00011623806,0.00021628856,0.00023815488,0.0000041782882,0.0008150621,0.00039294403,0.000002695969],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006218222,0.0000496779,0.044941578,0.000099552904,0.0001351153,0.000012055961,0.0000022780603,0.000022771497,0.9545696,0.000051013987,0.000050896233,0.000003313013],"study_design_scores_gemma":[0.0005062301,0.00010545014,0.33484164,0.00007579469,0.000028923117,2.0255742e-8,7.307971e-7,0.00007334574,0.6636531,0.0000028884476,0.00039355576,0.00031836692],"about_ca_topic_score_codex":0.00015348344,"about_ca_topic_score_gemma":0.00008113612,"teacher_disagreement_score":0.2909165,"about_ca_system_score_codex":0.000049716877,"about_ca_system_score_gemma":0.00016307611,"threshold_uncertainty_score":0.9997962},"labels":[],"label_agreement":null},{"id":"W4386122247","doi":"10.3389/fcimb.2023.1205829","title":"Amidation of glutamate residues in mycobacterial peptidoglycan is essential for cell wall cross-linking","year":2023,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Medical Research Council; South African Medical Research Council; National Research Foundation; Innovation Saskatchewan; Howard Hughes Medical Institute; National Science Foundation","keywords":"Peptidoglycan; Cell wall; Mycobacterium smegmatis; Biochemistry; Bacterial cell structure; Biology; Cell biology; Fluorescence microscope; Bacteria; Chemistry; Fluorescence","score_opus":0.005658864303109813,"score_gpt":0.23025341947093375,"score_spread":0.22459455516782395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386122247","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99642324,0.0002454199,0.0016300047,0.00006386992,0.0012535645,0.00027206496,0.00007259767,0.000014435494,0.00002477517],"genre_scores_gemma":[0.9968145,0.0010838624,0.00076812773,0.000043704476,0.00016007145,0.000021883327,0.0009256578,0.000017559392,0.0001646562],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893916,0.0000632826,0.00034111267,0.00036732532,0.000021454698,0.00026769206],"domain_scores_gemma":[0.9996378,0.000007571666,0.00012863368,0.00015510562,0.00004911765,0.00002178856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026363987,0.00013938443,0.00022897638,0.00025898605,0.00004724161,0.0000175361,0.00009051408,0.0005055043,0.0000075424564],"category_scores_gemma":[0.000020433325,0.0001478847,0.00006539972,0.00018048595,0.00016409358,0.0000059802305,0.00009693117,0.000091418326,0.0000018323842],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022923853,0.000041099982,0.08043542,0.00007063146,0.000014979187,7.8958425e-7,0.00006426623,0.000030324241,0.9177589,0.000011204331,0.000672111,0.00067103235],"study_design_scores_gemma":[0.001462106,0.00034201794,0.009370043,0.000015447447,0.000009249623,0.0000040245727,0.000020394478,0.00015676394,0.97296447,0.00024419688,0.015254756,0.00015655065],"about_ca_topic_score_codex":0.00009626844,"about_ca_topic_score_gemma":0.00009268744,"teacher_disagreement_score":0.07106537,"about_ca_system_score_codex":0.000017803834,"about_ca_system_score_gemma":0.000034064822,"threshold_uncertainty_score":0.6030563},"labels":[],"label_agreement":null},{"id":"W4386246713","doi":"10.1101/2023.08.28.549404","title":"Structural and biophysical analysis of a <i>Haemophilus influenzae</i> tripartite ATP-independent periplasmic (TRAP) transporter","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"Marsden Fund; Biomolecular Interaction Centre, University of Canterbury; Science for Life Laboratory; Umeå Universitet; Australian Cancer Research Foundation; Royal Society Te Apārangi; Knut och Alice Wallenbergs Stiftelse; Stockholms Universitet; Canterbury Medical Research Foundation; Kempestiftelserna; Australian Synchrotron; Kempe Foundation; Australian Nuclear Science and Technology Organisation; Australian Institute of Nuclear Science and Engineering","keywords":"Periplasmic space; Transporter; ATP-binding cassette transporter; Chemistry; Biophysics; Biochemistry; Biology; Escherichia coli","score_opus":0.012351984379072568,"score_gpt":0.22191901073076067,"score_spread":0.2095670263516881,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386246713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997159,0.000524554,0.00013219184,0.00015534335,0.000533013,0.00037564978,0.0010353702,0.00008396286,9.318842e-7],"genre_scores_gemma":[0.9982476,0.00064002146,0.0005836404,0.00011301857,0.0002558199,0.000055104087,0.000010361554,0.00008858147,0.0000058186583],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974215,0.00006737283,0.000648409,0.0011372886,0.00025608542,0.00046934676],"domain_scores_gemma":[0.99806374,0.000011988885,0.0003934674,0.001109905,0.00023380671,0.00018708341],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002131876,0.0005228532,0.00084898225,0.00039037535,0.00007756996,0.000069849455,0.00047616384,0.0011256052,0.000014178574],"category_scores_gemma":[0.000030479736,0.00052577467,0.00038381817,0.0006366977,0.00032318744,0.0000058272135,0.00048585713,0.00043074097,0.0000046429714],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117955286,0.000049802755,0.007874279,0.00013439592,0.001522394,0.000016126938,0.000012044715,0.00015698625,0.99002516,0.00005739494,0.00002858171,0.0000048707566],"study_design_scores_gemma":[0.0005775145,0.00019126605,0.2633297,0.000048309255,0.001191914,4.1499757e-8,0.000003248469,0.00061506004,0.7317657,0.00000212018,0.0016823645,0.00059274735],"about_ca_topic_score_codex":0.00008007741,"about_ca_topic_score_gemma":0.000031354975,"teacher_disagreement_score":0.25825945,"about_ca_system_score_codex":0.000031398133,"about_ca_system_score_gemma":0.00019555009,"threshold_uncertainty_score":0.9997194},"labels":[],"label_agreement":null},{"id":"W4386766625","doi":"10.1146/annurev-micro-032521-025503","title":"Structural Insights into Type III Secretion Systems of the Bacterial Flagellum and Injectisome","year":2023,"lang":"en","type":"review","venue":"Annual Review of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Flagellum; Secretion; Biology; Effector; Cell biology; Motility; Type three secretion system; Bacteria; Virulence; Biochemistry; Genetics; Gene","score_opus":0.01286180838974512,"score_gpt":0.2728799422704768,"score_spread":0.2600181338807317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386766625","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.019220285,0.9778518,0.0000011641737,0.000020495858,0.0017206877,0.00089380017,0.00026949914,0.000008254882,0.000014005216],"genre_scores_gemma":[0.0013704482,0.99701643,0.000023643115,0.000040145278,0.00028369934,0.000020801484,0.001064344,0.000037670226,0.00014284771],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979071,0.0004205416,0.00094029796,0.0004653761,0.000049674236,0.00021699944],"domain_scores_gemma":[0.9982457,0.00003252137,0.00087831804,0.000591807,0.0002155081,0.0000361259],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002451636,0.00035540198,0.0015748262,0.000082288316,0.00004982593,0.0000063832013,0.000519192,0.0009720845,0.000011240819],"category_scores_gemma":[0.00016976638,0.00021875893,0.0003044616,0.00028907825,0.00041796934,0.000002492015,0.00069001084,0.00022126235,0.0000069590224],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055679484,0.00002750825,0.0000038206063,0.16150644,0.00071567524,0.000002456815,0.000073697076,2.1378605e-7,0.69222224,0.0002679934,0.0031596313,0.14196463],"study_design_scores_gemma":[0.00013918929,0.00041256365,0.0000040832238,0.017310008,0.0003330477,0.00011893707,0.0000150793885,1.3631401e-7,0.003373066,0.000011626852,0.9780524,0.00022987019],"about_ca_topic_score_codex":0.000056191035,"about_ca_topic_score_gemma":0.00003741299,"teacher_disagreement_score":0.97489274,"about_ca_system_score_codex":0.000015364247,"about_ca_system_score_gemma":0.0002291844,"threshold_uncertainty_score":0.89207304},"labels":[],"label_agreement":null},{"id":"W4387040950","doi":"10.1073/pnas.2307093120","title":"Structure of the <i>bc</i> <sub>1</sub> – <i>cbb</i> <sub>3</sub> respiratory supercomplex from <i>Pseudomonas aeruginosa</i>","year":2023,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Cystic Fibrosis Canada","keywords":"Cytochrome; Electron transport chain; Cytochrome c; Coenzyme Q – cytochrome c reductase; Cytochrome C1; Respiratory chain; Heme; Cytochrome b; Biochemistry; Cytochrome b6f complex; Biology; Electron transfer; Chemiosmosis; Protein subunit; Chemistry; ATP synthase; Mitochondrion; Photochemistry; Enzyme; Gene","score_opus":0.021342878187324475,"score_gpt":0.2515495539137738,"score_spread":0.23020667572644934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387040950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969843,0.0002375393,4.180093e-7,0.0019069798,0.00011018034,0.0002234836,0.00027318523,0.000013916242,0.00025002423],"genre_scores_gemma":[0.9985593,0.00025008467,0.00014900023,0.00077336415,0.00023669993,0.0000064994765,0.0000040127707,0.000011745247,0.000009279058],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99803025,0.000020759637,0.00044596675,0.00044823874,0.0007848911,0.00026991748],"domain_scores_gemma":[0.99910307,0.000043001426,0.00045754306,0.00005172062,0.00030195128,0.00004269766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000514435,0.00018512017,0.00023271401,0.00010857348,0.0002168041,0.000022020204,0.0014672686,0.00038193582,0.0000029884068],"category_scores_gemma":[0.00025208114,0.00011899891,0.00017035284,0.00093899766,0.0015135976,0.000021136706,0.00058207463,0.00024069301,0.0000017964306],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024563968,0.00002278075,0.0023450858,0.000028020268,0.000028726634,1.070255e-8,0.00003592075,0.00003569906,0.9930728,0.0011252584,0.0026752632,0.0006058885],"study_design_scores_gemma":[0.0002268923,0.000084131,0.027104853,0.00004316449,0.000019829591,0.0000037239352,0.000063638596,0.000027038112,0.96187,0.008637165,0.0017875005,0.00013203872],"about_ca_topic_score_codex":0.000007702642,"about_ca_topic_score_gemma":0.0000022144666,"teacher_disagreement_score":0.031202758,"about_ca_system_score_codex":0.000013704511,"about_ca_system_score_gemma":0.000088179346,"threshold_uncertainty_score":0.55769134},"labels":[],"label_agreement":null},{"id":"W4387079007","doi":"10.1002/1873-3468.14740","title":"Siderophore specificities of the <i>Pseudomonas aeruginosa</i> TonB‐dependent transporters ChtA and ActA","year":2023,"lang":"en","type":"article","venue":"FEBS Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Centre National de la Recherche Scientifique; Université de Strasbourg; Agence Nationale de la Recherche; International Business Machines Corporation","keywords":"Siderophore; Pseudomonas aeruginosa; Aerobactin; Microbiology; Bacteria; Bacterial outer membrane; Virulence; Enterobactin; Ferric; Biology; Carboxylate; Efflux; Transporter; Chemistry; Biochemistry; Escherichia coli; Enterobacteriaceae; Gene; Genetics","score_opus":0.008287013798300965,"score_gpt":0.19547871763514632,"score_spread":0.18719170383684536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387079007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9856171,0.00012803514,0.00001825903,0.013466877,0.00039282546,0.00014670649,0.00006947704,0.000019436398,0.00014130592],"genre_scores_gemma":[0.9977281,0.00038726573,0.00006660485,0.0012308348,0.00015033364,0.000008009933,0.000054358366,0.000018501441,0.00035595955],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991261,0.000027851505,0.00018495468,0.00027790805,0.00015140216,0.00023182547],"domain_scores_gemma":[0.99948615,0.00000764399,0.0000731173,0.0003704342,0.000026796113,0.000035877827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010446185,0.00014048946,0.00014105045,0.000043117776,0.00006424809,0.000017374958,0.00026338117,0.00015842116,0.000010337607],"category_scores_gemma":[0.000013603909,0.00010660453,0.00008433633,0.00012112668,0.0002602176,0.0000019156328,0.00013675084,0.00009833038,0.0000032523108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003408821,0.000009684079,0.001764897,0.000016987517,0.000034511526,0.0000048425136,0.00007543665,0.000011459829,0.9906596,0.000030866147,0.0067226463,0.00063500705],"study_design_scores_gemma":[0.00033719122,0.000086162225,0.021595288,0.000012972752,0.000020462243,0.000015781303,0.00018209351,0.000004423134,0.9315444,0.000033604825,0.04601107,0.00015651049],"about_ca_topic_score_codex":0.000024383355,"about_ca_topic_score_gemma":0.00004646056,"teacher_disagreement_score":0.059115134,"about_ca_system_score_codex":0.0000055102605,"about_ca_system_score_gemma":0.000019200173,"threshold_uncertainty_score":0.43472067},"labels":[],"label_agreement":null},{"id":"W4387095938","doi":"10.7554/elife.90274","title":"Dual recognition of multiple signals in bacterial outer membrane proteins enhances assembly and maintains membrane integrity","year":2023,"lang":"en","type":"article","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Impact","funders":"Japan Science and Technology Agency; Waksman Foundation of Japan; National Health and Medical Research Council; Japan Society for the Promotion of Science; Sumitomo Foundation; Tokyo Biochemical Research Foundation; Australian Research Council; Ichiro Kanehara Foundation for the Promotion of Medical Sciences and Medical Care; Shinnihon Foundation of Advanced Medical Treatment Research; Uehara Memorial Foundation; Japan Agency for Medical Research and Development; Naito Foundation","keywords":"Cell biology; Bacterial outer membrane; Membrane; Membrane integrity; Membrane protein; Dual (grammatical number); Structural integrity; Translocase of the outer membrane; Chemistry; Biology; Biophysics; Biochemistry; Protein targeting; Gene; Escherichia coli; Engineering","score_opus":0.021144519207431503,"score_gpt":0.25667779567080895,"score_spread":0.23553327646337746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387095938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99881756,0.000053666143,0.000053266376,0.0003267245,0.00023024663,0.00031305195,0.000118773794,0.000024003846,0.00006271322],"genre_scores_gemma":[0.99778664,0.00067316915,0.0007299131,0.000066635876,0.00026637563,0.00004149511,0.00033868564,0.000016258527,0.00008084081],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989429,0.0000829933,0.0002980638,0.00032591674,0.00010810082,0.00024200774],"domain_scores_gemma":[0.99957585,0.000021695401,0.00009742375,0.00018126414,0.00007348197,0.00005028941],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003583153,0.00014354794,0.0002197738,0.00010602871,0.000032652115,0.000018526356,0.000105862564,0.0003446574,0.000030567364],"category_scores_gemma":[0.0002120252,0.00013236768,0.000048280872,0.00015930309,0.00010524515,0.0000051541056,0.00015460642,0.00013124292,0.000013289195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020094865,0.000056070596,0.00046690402,0.00004016038,0.000024256082,0.000006337518,0.00004976293,0.0000024435906,0.9958234,0.000006431403,0.00007209636,0.0032511936],"study_design_scores_gemma":[0.0007920585,0.00037037113,0.0055365916,0.00003368552,0.000008071014,0.000007696524,0.00009009848,0.000060602917,0.9903029,0.00004170617,0.002596092,0.00016007824],"about_ca_topic_score_codex":0.000101516176,"about_ca_topic_score_gemma":0.000571742,"teacher_disagreement_score":0.0055204467,"about_ca_system_score_codex":0.000006929137,"about_ca_system_score_gemma":0.000052111413,"threshold_uncertainty_score":0.5397797},"labels":[],"label_agreement":null},{"id":"W4387096270","doi":"10.7554/elife.90274.1","title":"Simultaneous Recognition of Multiple Signals in Bacterial Outer Membrane Proteins Enhance Assembly and Maintain Membrane Integrity","year":2023,"lang":"en","type":"preprint","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Impact","funders":"Japan Society for the Promotion of Science","keywords":"Membrane integrity; Membrane; Bacterial outer membrane; Structural integrity; Membrane protein; Cell biology; Chemistry; Biophysics; Computer science; Biology; Biochemistry; Engineering; Escherichia coli; Gene","score_opus":0.02189301125856323,"score_gpt":0.26521039413555947,"score_spread":0.24331738287699622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387096270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957883,0.000092743874,0.0014330359,0.0004248764,0.00054171623,0.0011285287,0.00046618804,0.000047209618,0.00007743345],"genre_scores_gemma":[0.99070626,0.0012497742,0.0061097783,0.000060838065,0.0003121073,0.00013153264,0.0011047728,0.000056926914,0.00026799558],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99764067,0.00018462252,0.00069503166,0.0009429814,0.00015036321,0.00038630413],"domain_scores_gemma":[0.9987925,0.00008322048,0.000308513,0.00055255037,0.00018089985,0.000082302926],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005049549,0.0004083827,0.00060185295,0.00017834733,0.000030644358,0.000048752794,0.0003480941,0.0016489014,0.00005759282],"category_scores_gemma":[0.00061978213,0.00038775516,0.00013077911,0.00011240923,0.00017768562,0.0000033095982,0.0010394792,0.0005869433,0.000010412808],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049751304,0.0001309589,0.00009056025,0.00031743656,0.00008147015,0.000022716995,0.000024640964,0.000105419014,0.9928593,0.000009106921,0.00002587478,0.00583497],"study_design_scores_gemma":[0.00072931126,0.00044002337,0.0002396027,0.00019367815,0.000029194498,0.000012086926,0.000047478596,0.0007015747,0.99587595,0.0006774097,0.00060520635,0.00044850813],"about_ca_topic_score_codex":0.00073662633,"about_ca_topic_score_gemma":0.0031774803,"teacher_disagreement_score":0.005386462,"about_ca_system_score_codex":0.000026109252,"about_ca_system_score_gemma":0.00014245049,"threshold_uncertainty_score":0.9998574},"labels":[],"label_agreement":null},{"id":"W4387402692","doi":"10.3389/fmicb.2023.1291172","title":"Editorial: Role of transcription factors and sigma factors in bacterial stress physiology","year":2023,"lang":"en","type":"editorial","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; Universidad Nacional Autónoma de México","keywords":"Sigma factor; Physiology; Biology; Genetics; Gene; Promoter; Gene expression","score_opus":0.003323228151890165,"score_gpt":0.19963685043292764,"score_spread":0.19631362228103746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387402692","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.47030324,0.00051672984,0.000005951005,0.000007692791,0.52758694,0.00018822109,0.0013757508,0.0000121579,0.000003326522],"genre_scores_gemma":[0.15187827,0.0052262023,0.00026353655,0.00000552955,0.8248616,0.00004033726,0.017507387,0.0001368426,0.00008030684],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99727404,0.00027747167,0.0007261016,0.0009940623,0.00009154167,0.00063677726],"domain_scores_gemma":[0.99896085,0.00009638479,0.0003380226,0.00043701337,0.00010490115,0.00006283082],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002490988,0.00055586395,0.0010944913,0.0004581506,0.00003453012,0.000015844289,0.0005273571,0.0051267943,0.000009834288],"category_scores_gemma":[0.0003807094,0.00051645964,0.00015917755,0.00020807367,0.0004922543,0.000005309535,0.00027434016,0.0007513257,0.0000010877286],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002854034,0.000055002398,0.0028306264,0.00006280056,0.00006599129,6.758557e-7,0.00007617683,0.0000033769422,0.62670195,0.0000011492274,0.36981466,0.0001021571],"study_design_scores_gemma":[0.001056733,0.0005396901,0.0013345671,0.000059035563,0.000030746112,4.493244e-7,0.00027206872,0.0000015240499,0.30100507,0.000095642805,0.6951756,0.00042889378],"about_ca_topic_score_codex":0.00043545797,"about_ca_topic_score_gemma":0.0012234513,"teacher_disagreement_score":0.32569692,"about_ca_system_score_codex":0.00006364605,"about_ca_system_score_gemma":0.00020084101,"threshold_uncertainty_score":0.9997287},"labels":[],"label_agreement":null},{"id":"W4387777519","doi":"10.1101/2023.10.18.561931","title":"The sensor of the bacterial histidine kinase CpxA is a novel dimer of extracytoplasmic Per-ARNT-Sim (PAS) domains","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Light Source","keywords":"Histidine kinase; Two-component regulatory system; Biology; Transmembrane domain; Operon; Response regulator; Dimer; Biochemistry; Mutant; Genetics; Cell biology; Chemistry; Gene","score_opus":0.014787471681810256,"score_gpt":0.21486963104064902,"score_spread":0.20008215935883877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387777519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99344057,0.00065570045,0.00022148332,0.0009785226,0.0025939862,0.00064727437,0.0014100582,0.000048710186,0.000003691257],"genre_scores_gemma":[0.9966878,0.0009851747,0.0013095755,0.00010718105,0.00065444567,0.00007643158,0.0000029562289,0.00012177915,0.00005464803],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974251,0.00012192638,0.0007657047,0.0008639596,0.00030504118,0.00051826215],"domain_scores_gemma":[0.9963694,0.00005718822,0.0008043649,0.0022002698,0.0004605278,0.00010820728],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004872788,0.00051297044,0.000543821,0.00009705718,0.00019393417,0.00006398159,0.0012169365,0.0011067187,0.00002245898],"category_scores_gemma":[0.00038910922,0.00037128135,0.00036639537,0.00027809708,0.00063275197,0.000003667704,0.001587026,0.00051175116,0.000010265711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015123273,0.00012159941,0.0008172438,0.00012689798,0.00024815399,0.000002293147,0.0000056545305,0.000011478819,0.9977218,0.00024355907,0.0005448098,0.0000052809964],"study_design_scores_gemma":[0.0006003081,0.00013575022,0.020812895,0.00013125378,0.00013294199,7.658297e-8,0.0000045491474,0.000032457832,0.92988944,0.0000031672585,0.047861274,0.00039586832],"about_ca_topic_score_codex":0.00007574779,"about_ca_topic_score_gemma":0.000026404412,"teacher_disagreement_score":0.067832336,"about_ca_system_score_codex":0.000053981177,"about_ca_system_score_gemma":0.00055739,"threshold_uncertainty_score":0.99987394},"labels":[],"label_agreement":null},{"id":"W4387944309","doi":"10.52843/cassyni.44vfhg","title":"Coding bacterial genetic information into structural attributes","year":2021,"lang":"en","type":"preprint","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Promoter; Genetics; Biology; Gene; Computational biology; Transcription (linguistics); Coding region; Sigma factor; Transcription factor; DNA; Response element; Gene expression","score_opus":0.008383786202715838,"score_gpt":0.228961440857996,"score_spread":0.22057765465528015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387944309","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929439,0.00037780372,0.0033778946,0.0003300455,0.0023187613,0.00027375613,0.00008321816,0.000043945445,0.00025070127],"genre_scores_gemma":[0.97913027,0.0006133273,0.013748792,0.00022058147,0.0008698592,0.00002892363,0.00528782,0.000022552475,0.00007787865],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998594,0.000053406737,0.000456668,0.00045676457,0.00013422818,0.00030495232],"domain_scores_gemma":[0.9988236,0.000004586753,0.00021198565,0.0006562053,0.00022146515,0.000082201215],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008227993,0.00033417012,0.00030262297,0.00007771451,0.00009186487,0.00029488318,0.0004230923,0.0012101865,0.00018933183],"category_scores_gemma":[0.00008399165,0.00031806645,0.0001652658,0.00006568371,0.0000951117,0.000005764442,0.0018466006,0.00029681504,0.00001361496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052180985,0.000010429611,0.00052858866,0.00011077387,0.000116529634,0.0000028120332,0.000052492425,0.000101545855,0.98701566,0.00008745925,0.0007991649,0.011122351],"study_design_scores_gemma":[0.00062095665,0.00024067993,0.009777356,0.000050987583,0.00006492008,0.00004711113,0.00009519779,0.00040932605,0.95056605,0.0004691993,0.0368478,0.00081038184],"about_ca_topic_score_codex":0.000115428054,"about_ca_topic_score_gemma":0.00012338473,"teacher_disagreement_score":0.03644959,"about_ca_system_score_codex":0.00003042113,"about_ca_system_score_gemma":0.00023855655,"threshold_uncertainty_score":0.99992716},"labels":[],"label_agreement":null},{"id":"W4388347062","doi":"10.1101/2023.11.03.565435","title":"Conserved patterns of sequence diversification provide insight into the evolution of two-component systems in Enterobacteriaceae","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta; Universities Space Research Association","keywords":"Biology; Conserved sequence; Genetics; Evolutionary biology; Molecular evolution; Enterobacteriaceae; Gene; Computational biology; Phylogenetics; Peptide sequence; Escherichia coli","score_opus":0.01918199634307314,"score_gpt":0.22397783124600076,"score_spread":0.20479583490292763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388347062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99629873,0.000842789,0.00069625204,0.00015911995,0.00094192993,0.00076049054,0.00026662138,0.000033425447,6.2770056e-7],"genre_scores_gemma":[0.9988234,0.0005977357,0.00027396926,0.000012672615,0.00012497693,0.000117527576,0.0000060465595,0.00004093667,0.0000027577523],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99813986,0.00021086348,0.0006264815,0.000605856,0.0001721589,0.00024479584],"domain_scores_gemma":[0.99789613,0.000017878467,0.0006469191,0.0010661602,0.00032273476,0.000050192764],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045972102,0.00027720968,0.00037875277,0.0001774318,0.00004462659,0.000035355708,0.00063182914,0.0005344191,0.0000018199696],"category_scores_gemma":[0.00008930487,0.00024759874,0.00010045401,0.00021579178,0.00017916286,0.00000534837,0.00073493435,0.0002543964,0.000003295568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005617519,0.00006987816,0.05100828,0.00036653978,0.00008189448,0.0000028466459,0.000021622363,0.00012182601,0.94801897,0.00024266,0.0000074828795,0.0000018510335],"study_design_scores_gemma":[0.00042029077,0.00010491507,0.17683078,0.000351317,0.000041649437,2.0533902e-8,0.000017666893,0.00021847025,0.8210568,0.000002357684,0.00071682665,0.00023891263],"about_ca_topic_score_codex":0.0028217887,"about_ca_topic_score_gemma":0.00014075293,"teacher_disagreement_score":0.12696216,"about_ca_system_score_codex":0.00016036791,"about_ca_system_score_gemma":0.00033690227,"threshold_uncertainty_score":0.9999976},"labels":[],"label_agreement":null},{"id":"W4388538792","doi":"10.1111/omi.12444","title":"Dual function of the O‐antigen WaaL ligase of <i>Aggregatibacter actinomycetemcomitans</i>","year":2023,"lang":"en","type":"article","venue":"Molecular Oral Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; National Institute of Dental and Craniofacial Research; University of Wisconsin-Madison; University of Pennsylvania; National Institutes of Health; Children's Hospital of Philadelphia","keywords":"DNA ligase; Plasmid; Bacterial adhesin; Glycosylation; Biology; Escherichia coli; Biochemistry; Chemistry; Molecular biology; Enzyme; DNA; Gene","score_opus":0.006970813603558805,"score_gpt":0.2071398551126953,"score_spread":0.2001690415091365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388538792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99828595,0.00022172376,0.00011283232,0.00045927687,0.00047854043,0.00020922183,0.00011154192,0.00001841343,0.00010249064],"genre_scores_gemma":[0.9990137,0.000086546024,0.00020473376,0.00023054023,0.00006151745,0.000008227171,0.00020905456,0.000023435558,0.00016225042],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887675,0.00012839895,0.00033201618,0.00032339073,0.000048246147,0.00029122323],"domain_scores_gemma":[0.99911445,0.0000090572385,0.00021290363,0.00053281087,0.00009912371,0.00003162758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016537576,0.000172948,0.00025206746,0.00007693228,0.00004592859,0.000005174249,0.0003093,0.00042571974,0.00002038026],"category_scores_gemma":[0.000052419404,0.00013098668,0.0001998211,0.00029902114,0.00033161667,0.0000019534139,0.00038756483,0.00012125386,0.000015628913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011673671,0.000036836016,0.0019184103,0.000017422328,0.0001027639,0.0000032171945,0.000010018586,0.000018077244,0.9953001,0.00012996889,0.0011131603,0.0012332927],"study_design_scores_gemma":[0.0004165877,0.0003867835,0.005439296,0.0000117062045,0.000031218508,0.000034832276,0.000017374608,0.0000032683827,0.95544714,0.00009289205,0.03798599,0.00013288516],"about_ca_topic_score_codex":0.000017739714,"about_ca_topic_score_gemma":0.000024202916,"teacher_disagreement_score":0.039852932,"about_ca_system_score_codex":0.000006363363,"about_ca_system_score_gemma":0.000066561355,"threshold_uncertainty_score":0.5341482},"labels":[],"label_agreement":null},{"id":"W4388971678","doi":"10.7554/elife.91125","title":"Mapping the architecture of the initiating phosphoglycosyl transferase from S. enterica O-antigen biosynthesis in a liponanoparticle","year":2023,"lang":"en","type":"article","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Glycoconjugate; Biosynthesis; Transferase; Glycosyltransferase; Biology; Biochemistry; Function (biology); Enzyme; Computational biology; Glycomics; Structural biology; Cell biology; Gene; Proteomics","score_opus":0.014646338229758209,"score_gpt":0.21273796559033575,"score_spread":0.19809162736057753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388971678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969259,0.00033314142,0.000080375656,0.0022431032,0.00013898026,0.00015026164,0.00006120403,0.000014315343,0.00005274106],"genre_scores_gemma":[0.9989706,0.00029670808,0.00019581808,0.00037934986,0.00009436368,0.000015724268,0.000016536953,0.000012996472,0.000017901493],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991979,0.000080139245,0.00021219367,0.00020128716,0.00010392358,0.0002045641],"domain_scores_gemma":[0.99952483,0.0000318571,0.000055465014,0.00034517847,0.000020529247,0.000022117722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016931069,0.00009868162,0.00011536014,0.00003515884,0.00006522816,0.000011961522,0.00033248105,0.000121692305,0.00001629342],"category_scores_gemma":[0.0001155976,0.00006027801,0.00008251617,0.0003425564,0.0001014823,0.0000010574109,0.00017244871,0.00010369227,0.000007125407],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029843419,0.000020289175,0.004344995,0.000004006164,0.00002371299,0.0000014889237,0.00036797556,0.00003380631,0.9876647,0.000008681625,0.00009766941,0.007402836],"study_design_scores_gemma":[0.00017470284,0.00004005026,0.050111122,0.000023123288,0.0000046543532,0.0000015030394,0.00020346709,0.000093718765,0.9382935,0.00006141966,0.010917195,0.00007554549],"about_ca_topic_score_codex":0.00010756692,"about_ca_topic_score_gemma":0.00017726985,"teacher_disagreement_score":0.049371198,"about_ca_system_score_codex":0.000004402662,"about_ca_system_score_gemma":0.00003643869,"threshold_uncertainty_score":0.24580659},"labels":[],"label_agreement":null},{"id":"W4389008168","doi":"10.1096/fasebj.30.1_supplement.1092.3","title":"Influence of NSAID Flurbiprofen on Protein Helix‐helix Interactions","year":2016,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Flurbiprofen; Transmembrane protein; Chemistry; Membrane protein; Integral membrane protein; Helix (gastropod); Transmembrane domain; Biophysics; Protein–protein interaction; Biochemistry; Protein structure; Alpha helix; Leucine zipper; Membrane; Biology; Peptide sequence; Pharmacology; Receptor","score_opus":0.00857854988173814,"score_gpt":0.23867010396320545,"score_spread":0.2300915540814673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389008168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968726,0.000085575964,0.00020041665,0.0023501522,0.00014318987,0.00011937395,0.000019606685,0.0000057855973,0.0002032825],"genre_scores_gemma":[0.99817824,0.00018111634,0.00016833955,0.00016493663,0.00028107734,0.000007360888,0.0000020500734,0.000011125497,0.0010057683],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930423,0.00007078418,0.00021585132,0.00013223036,0.00009825413,0.0001786634],"domain_scores_gemma":[0.9993502,0.0000121493995,0.00016449636,0.00031566824,0.000107505766,0.00004997565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019766613,0.00010219185,0.0000978106,0.00004516209,0.00010106097,0.000014423126,0.00032851187,0.000109934284,0.00004841514],"category_scores_gemma":[0.00010033351,0.00005221864,0.000074208525,0.000056522833,0.00015240854,0.0000037341763,0.00009922095,0.00016219883,0.000033380587],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013511139,0.000034766806,0.0001675413,0.000002719422,0.00003561655,0.0000017765125,0.0000119333345,0.000024715211,0.99355173,0.00012983764,0.00026130097,0.00564295],"study_design_scores_gemma":[0.00033992616,0.00053648994,0.0013525405,0.00007179524,0.000009180794,0.00009274594,0.0000192824,0.0000013410757,0.9841559,0.00031649254,0.013022987,0.0000813449],"about_ca_topic_score_codex":0.0000055315027,"about_ca_topic_score_gemma":0.000009952353,"teacher_disagreement_score":0.012761686,"about_ca_system_score_codex":0.000012424065,"about_ca_system_score_gemma":0.00005988294,"threshold_uncertainty_score":0.21294142},"labels":[],"label_agreement":null},{"id":"W4389024321","doi":"10.1096/fasebj.30.1_supplement.810.1","title":"Exploring GTP Control of Bacterial Respiratory System Specific Chaperone Interaction with its Substrate Protein's Twin‐Arginine Signal Peptide","year":2016,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; University of Alberta","funders":"","keywords":"Cooperativity; Chemistry; Chaperone (clinical); Biophysics; Protein folding; Translocase; Dimer; Biochemistry; GTP'; Twin-arginine translocation pathway; Crystallography; Signal peptide; Peptide sequence; Enzyme; Biology; Chromosomal translocation","score_opus":0.03567225100249549,"score_gpt":0.21540552004794067,"score_spread":0.17973326904544518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389024321","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970806,0.00024170591,0.0016560014,0.00023256597,0.00040315863,0.00024981852,0.000030851657,0.000012718477,0.00009253976],"genre_scores_gemma":[0.9982879,0.00014152016,0.00009253453,0.000020544248,0.0013257792,0.00002529361,0.000004223159,0.000025090441,0.00007710436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988545,0.00013932122,0.00035760156,0.00021682848,0.00015791459,0.00027379024],"domain_scores_gemma":[0.9991255,0.00001357379,0.00034365288,0.00026509975,0.0001713985,0.00008078865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039881954,0.00017781908,0.00020989882,0.000063650674,0.00011705454,0.00003798404,0.0002692011,0.00011885103,0.000078944606],"category_scores_gemma":[0.000015084702,0.00009342513,0.00007991614,0.00006417818,0.00013806841,0.000017685177,0.00005143995,0.0001770923,0.000012245482],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015859557,0.000028757038,0.000090390204,0.000012956925,0.00009204606,0.000013527685,0.000026578424,0.0000117103555,0.99555105,0.00010085918,0.000027755674,0.0024583875],"study_design_scores_gemma":[0.001848459,0.0013723276,0.0006892743,0.0001705554,0.000025521977,0.00023172764,0.00018090475,0.000005063566,0.9888588,0.0000035936644,0.006467998,0.00014576771],"about_ca_topic_score_codex":0.0000018943167,"about_ca_topic_score_gemma":0.000005794034,"teacher_disagreement_score":0.006692269,"about_ca_system_score_codex":0.000032726337,"about_ca_system_score_gemma":0.00007952635,"threshold_uncertainty_score":0.38097662},"labels":[],"label_agreement":null},{"id":"W4389042099","doi":"10.1073/pnas.2316668120","title":"Tad and toxin-coregulated pilus structures reveal unexpected diversity in bacterial type IV pili","year":2023,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of General Medical Sciences; National Institutes of Health; National Cancer Institute; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Office of Science; U.S. Department of Energy","keywords":"Pilus; Caulobacter crescentus; Pilin; Biology; Fimbriae Proteins; Archaea; Bacteria; Helix (gastropod); Bacterial cell structure; Microbiology; Escherichia coli; Genetics; Bacterial protein; Gene","score_opus":0.029756884624180115,"score_gpt":0.2742020092103083,"score_spread":0.2444451245861282,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389042099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988958,0.000047952595,3.151115e-8,0.00073971355,0.000042492346,0.0000842343,0.000015326736,0.0000058517885,0.00016855562],"genre_scores_gemma":[0.99955887,0.00008292719,0.00017785009,0.000045155164,0.00006535619,0.0000010152676,0.0000014666614,0.0000022502272,0.0000650926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99931824,0.0000051642987,0.00014503904,0.0001991804,0.00021903061,0.00011331984],"domain_scores_gemma":[0.9997376,0.000008416874,0.00012478494,0.000008390228,0.000103585626,0.000017175314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029675293,0.000064137595,0.000092336064,0.00009838601,0.00010360272,0.000009952094,0.00035369152,0.00016364935,0.0000046221426],"category_scores_gemma":[0.0001604618,0.000046234036,0.000022423761,0.0005418886,0.0004981579,0.000007817906,0.0004414658,0.00006870325,2.6296985e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054228596,0.000007275901,0.009197578,0.000010846586,0.0000071536565,7.3423645e-9,0.000043178552,0.000006642708,0.9890927,0.0010829379,0.00033914534,0.00015829709],"study_design_scores_gemma":[0.00017355681,0.00008642824,0.35298377,0.000009337034,0.0000032609018,0.0000027761662,0.0000362339,0.000050940118,0.6389878,0.0074319923,0.00018452648,0.000049414128],"about_ca_topic_score_codex":0.0000094171755,"about_ca_topic_score_gemma":7.535189e-7,"teacher_disagreement_score":0.35010493,"about_ca_system_score_codex":0.000006562877,"about_ca_system_score_gemma":0.000016010965,"threshold_uncertainty_score":0.18853693},"labels":[],"label_agreement":null},{"id":"W4389117591","doi":"10.1016/j.heliyon.2023.e22986","title":"ArdA genes from pKM101 and from B. bifidum chromosome have a different range of regulated genes","year":2023,"lang":"en","type":"article","venue":"Heliyon","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Research Center \"Kurchatov Institute\"; National Research Council Canada; Ministry of Science and Higher Education of the Russian Federation; Russian Science Foundation; Ministry of Education and Science of the Russian Federation","keywords":"Plasmid; Gene; Biology; Genetics; Transposable element; Bacteriophage; Chromosome; Escherichia coli; Mutant","score_opus":0.012071897100579217,"score_gpt":0.2212613518337454,"score_spread":0.2091894547331662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389117591","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9851593,0.0135987615,0.000038422237,0.00025519705,0.0002917732,0.00014967806,0.000441044,0.00004042201,0.000025445179],"genre_scores_gemma":[0.9766817,0.021705216,0.00022424206,0.000055359484,0.00036002556,0.000015474261,0.0006755081,0.000029586938,0.00025286953],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989396,0.00004456542,0.0002442021,0.00043435593,0.00010108153,0.00023622016],"domain_scores_gemma":[0.9993539,0.00001475436,0.0000965395,0.00041977575,0.000047810365,0.00006721864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000046323985,0.00019262618,0.00026857428,0.00006828813,0.00004413249,0.000018866363,0.00017059076,0.00040538894,0.000054033124],"category_scores_gemma":[0.000017287883,0.00016558806,0.00007435131,0.00009125163,0.00015657916,0.0000018216907,0.0002592532,0.00006686302,0.000014933588],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000085638356,0.000031379437,0.009286306,0.000032153926,0.000092929266,0.0000053641306,0.000032707332,0.0000022768907,0.981977,0.000007869663,0.00013026403,0.008316119],"study_design_scores_gemma":[0.00063567696,0.0002006099,0.07133884,0.00005020489,0.000036460155,0.000002282253,0.00004676527,0.000051031067,0.9160223,0.0001643627,0.011260833,0.00019060401],"about_ca_topic_score_codex":0.00013484005,"about_ca_topic_score_gemma":0.00020233184,"teacher_disagreement_score":0.06595466,"about_ca_system_score_codex":0.00000584882,"about_ca_system_score_gemma":0.000018145462,"threshold_uncertainty_score":0.6752485},"labels":[],"label_agreement":null},{"id":"W4389805711","doi":"10.1016/j.engmic.2023.100135","title":"Chromatographic and mass spectroscopic guided discovery of Trichoderma peptaibiotics and their bioactivity","year":2023,"lang":"en","type":"review","venue":"Engineering Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Isolation (microbiology); Trichoderma; Chromatography; Chemistry; Peptide; Amino acid; Biochemical engineering; Combinatorial chemistry; Computational biology; Biotechnology; Biology; Biochemistry; Microbiology; Engineering","score_opus":0.015001845062915088,"score_gpt":0.24380159016638348,"score_spread":0.2287997451034684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389805711","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04302871,0.95526767,0.0006916445,0.000016210144,0.0003224117,0.00034365593,0.00028145296,0.000039698374,0.000008544483],"genre_scores_gemma":[0.00726451,0.99149954,0.00058583217,0.000005712495,0.00014105762,0.0000129094105,0.00031763027,0.00006899924,0.00010382501],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99864715,0.00005973066,0.0004148834,0.0005313995,0.000018342596,0.00032849677],"domain_scores_gemma":[0.9993135,0.000044281092,0.00019735891,0.00037810544,0.000021377351,0.00004540231],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013804137,0.0004302927,0.0010604577,0.0002517043,0.000029096205,0.000022080752,0.0002104615,0.00095785887,0.0000013732389],"category_scores_gemma":[0.000051853523,0.0003445712,0.0001852812,0.0002123984,0.0002100633,0.000002586822,0.00030621912,0.00023424467,0.000001838636],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000041754606,0.000015881997,0.000021028745,0.003624819,0.00034962856,0.0000027037727,0.0000054868156,0.0000015311673,0.9850876,0.00005711694,0.00007516541,0.010754865],"study_design_scores_gemma":[0.00040943522,0.00047346094,0.000058082307,0.0013902228,0.00029576884,0.00035970047,0.0000095456335,0.00002239217,0.13768406,0.00002670125,0.85848516,0.0007854775],"about_ca_topic_score_codex":0.0000039552096,"about_ca_topic_score_gemma":0.0000031008278,"teacher_disagreement_score":0.85841,"about_ca_system_score_codex":0.000011346623,"about_ca_system_score_gemma":0.00006100841,"threshold_uncertainty_score":0.99990064},"labels":[],"label_agreement":null},{"id":"W4390615171","doi":"10.3390/microorganisms12010115","title":"Regulatory Role of GgaR (YegW) for Glycogen Accumulation in Escherichia coli K-12","year":2024,"lang":"en","type":"article","venue":"Microorganisms","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; Meiji University","keywords":"Glycogen; Operon; Escherichia coli; Repressor; Biology; Transcription factor; Chromatin immunoprecipitation; Biochemistry; Glycogen synthase; Transcription (linguistics); Cell biology; Gene; Gene expression; Promoter","score_opus":0.009126294187813869,"score_gpt":0.24086866918516261,"score_spread":0.23174237499734873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390615171","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969462,0.0017616997,0.0004934558,0.000119862954,0.00022741614,0.00024803582,0.000049415386,0.000019969562,0.00013391516],"genre_scores_gemma":[0.99665433,0.00008258772,0.0026003052,0.000059716276,0.00016381168,0.000015880727,0.00012865847,0.000031383937,0.00026331822],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928236,0.00001658719,0.00020756798,0.00027577495,0.000044528013,0.0001731892],"domain_scores_gemma":[0.99967164,0.000007352013,0.000040752093,0.00021998245,0.000034812416,0.000025442758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000115160874,0.00011224769,0.00012933617,0.000060421153,0.000020823212,0.00001762674,0.00014246584,0.00031077547,0.00002429994],"category_scores_gemma":[0.000019651088,0.00011179441,0.00006344469,0.000097983095,0.000058764224,0.0000023485725,0.000076739554,0.000058686906,0.0000068154905],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053977757,0.00002917642,0.00022933322,0.000034903387,0.000026590162,7.100793e-7,0.00004133064,0.000008815577,0.9953123,0.0005303984,0.00029645383,0.0034360564],"study_design_scores_gemma":[0.0002643622,0.00018771747,0.0019303821,0.000014617427,0.0000131685665,0.0000030526942,0.00003296541,0.000088484514,0.9127209,0.0007054129,0.08392024,0.00011867768],"about_ca_topic_score_codex":0.00001720279,"about_ca_topic_score_gemma":0.000059773163,"teacher_disagreement_score":0.08362379,"about_ca_system_score_codex":0.00001691187,"about_ca_system_score_gemma":0.00007892833,"threshold_uncertainty_score":0.4558844},"labels":[],"label_agreement":null},{"id":"W4390744494","doi":"10.1073/pnas.2312455121","title":"Structure of a tripartite protein complex that targets toxins to the type VII secretion system","year":2024,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Burroughs Wellcome Fund","keywords":"Effector; Secretion; Cytoplasm; Toxin; Cell biology; Function (biology); Extracellular; Biology; Microbial toxins; Pathogen; Domain (mathematical analysis); Bacteria; Microbiology; Biochemistry; Genetics","score_opus":0.028601945155654063,"score_gpt":0.28092786962653465,"score_spread":0.2523259244708806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390744494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961063,0.0003068165,0.000004250911,0.0029005646,0.000051449377,0.00025498605,0.0000566421,0.0000057658685,0.00031317558],"genre_scores_gemma":[0.99910885,0.000018606375,0.00060335675,0.000081566184,0.00010771129,0.000004746709,0.0000011084364,0.0000033371502,0.0000706878],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992227,0.0000063304183,0.0001710417,0.00018079112,0.000325615,0.00009351904],"domain_scores_gemma":[0.99967605,0.0000065435106,0.00013422089,0.000013216582,0.00015362918,0.00001634091],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003430177,0.00006638101,0.0000899521,0.000060319922,0.00007110204,0.00001771548,0.00049182074,0.0001238222,0.0000065439967],"category_scores_gemma":[0.000064940796,0.000036032452,0.00004590973,0.00039795722,0.0002905419,0.000006894758,0.00012850929,0.00007456666,5.77236e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020533027,0.0000058440787,0.000078856465,0.00008571725,0.000014409892,2.2015552e-9,0.00004896956,0.000022630185,0.9894022,0.009591341,0.00055455766,0.0001749928],"study_design_scores_gemma":[0.00004487987,0.00015077741,0.0036683183,0.00007725087,0.0000074791815,0.000005482903,0.00009471512,0.00037154133,0.98845744,0.0012477259,0.0058295624,0.000044850283],"about_ca_topic_score_codex":0.0000034709403,"about_ca_topic_score_gemma":4.615672e-7,"teacher_disagreement_score":0.008343615,"about_ca_system_score_codex":0.000009572201,"about_ca_system_score_gemma":0.000029970328,"threshold_uncertainty_score":0.14693607},"labels":[],"label_agreement":null},{"id":"W4390910879","doi":"10.7554/elife.90274.3","title":"Dual recognition of multiple signals in bacterial outer membrane proteins enhances assembly and maintains membrane integrity","year":2024,"lang":"en","type":"article","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Impact","funders":"Japan Science and Technology Agency; Waksman Foundation of Japan; National Health and Medical Research Council; Japan Society for the Promotion of Science; Sumitomo Foundation; Tokyo Biochemical Research Foundation; Australian Research Council; Ichiro Kanehara Foundation for the Promotion of Medical Sciences and Medical Care; Shinnihon Foundation of Advanced Medical Treatment Research; Uehara Memorial Foundation; Japan Agency for Medical Research and Development; Naito Foundation","keywords":"Bacterial outer membrane; Membrane; Biology; Inner membrane; Outer membrane efflux proteins; Cell biology; Folding (DSP implementation); Membrane protein; Biophysics; Biochemistry; Membrane transport protein; Escherichia coli","score_opus":0.016602411752628072,"score_gpt":0.2538383029490987,"score_spread":0.23723589119647062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390910879","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998164,0.00041000146,0.00018835253,0.00034394057,0.00036332206,0.00029150525,0.00012627651,0.0000205043,0.0000920938],"genre_scores_gemma":[0.99728775,0.00076758815,0.0011953998,0.000062490064,0.0003714594,0.00003419139,0.00018965596,0.000017463219,0.00007397581],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989794,0.00007247581,0.00029172996,0.00035751236,0.00009793065,0.00020098078],"domain_scores_gemma":[0.99966174,0.000021419559,0.000055305925,0.00015703664,0.0000577893,0.000046699242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002988433,0.00014922112,0.00020214374,0.00009038151,0.00002350563,0.000038017766,0.0000911449,0.00034563144,0.000046766527],"category_scores_gemma":[0.00012266576,0.00013130262,0.00005449627,0.00010198818,0.0001052292,0.000006720451,0.000112581976,0.0001642888,0.000007701307],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015945485,0.000057201178,0.00011799315,0.00009001715,0.000036209472,0.000010019548,0.000055314256,0.0000010275674,0.9930937,0.000019095109,0.000053352847,0.0063066077],"study_design_scores_gemma":[0.0004467854,0.00039020425,0.0009105357,0.00008336171,0.000013093108,0.000018395525,0.000052511572,0.00009101221,0.9913905,0.00005315978,0.0063891634,0.0001612747],"about_ca_topic_score_codex":0.00009583985,"about_ca_topic_score_gemma":0.0004778984,"teacher_disagreement_score":0.0063358103,"about_ca_system_score_codex":0.000009334111,"about_ca_system_score_gemma":0.00007303584,"threshold_uncertainty_score":0.5354365},"labels":[],"label_agreement":null},{"id":"W4391681169","doi":"10.1038/s41564-024-01603-2","title":"Synthesis of lipid-linked precursors of the bacterial cell wall is governed by a feedback control mechanism in Pseudomonas aeruginosa","year":2024,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of General Medical Sciences; Biotechnology and Biological Sciences Research Council; Engineering and Physical Sciences Research Council; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Warwick; Research Councils UK; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; G. Harold and Leila Y. Mathers Foundation; Universities Space Research Association; Wellcome Trust; National Institute of Allergy and Infectious Diseases; Medical Research Council; Howard Hughes Medical Institute; California Institute of Technology; Division of Intramural Research, National Institute of Allergy and Infectious Diseases; McMaster University; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Peptidoglycan; Lipid II; Pseudomonas aeruginosa; Biogenesis; Lipid A; Extracellular; Enzyme; Chemistry; Glycan; Cell biology; Biochemistry; Dimer; Cell wall; Bacterial cell structure; Monomer; Bacteria; Biophysics; Biology; Gene; Glycoprotein; Genetics","score_opus":0.0021031770755360318,"score_gpt":0.1891612311463514,"score_spread":0.18705805407081535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391681169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929134,0.002646572,0.000026922957,0.0012230611,0.0011681803,0.00037306352,0.0014880998,0.000012222391,0.00014844332],"genre_scores_gemma":[0.9984564,0.00041950663,0.00015456308,0.00037803114,0.00014931147,0.000019310548,0.00010051341,0.000028251194,0.000294091],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99852836,0.00016804421,0.00042155536,0.0005061118,0.00005608782,0.0003198128],"domain_scores_gemma":[0.99921966,0.00005772198,0.00018094317,0.00043956662,0.000070496986,0.000031641415],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00020439384,0.00025013497,0.000418303,0.00007177069,0.000023094566,0.000010939864,0.00054037716,0.0018235388,0.00008061081],"category_scores_gemma":[0.00007877545,0.00018159107,0.00021758373,0.00018383612,0.00023993243,0.000002431419,0.00019725069,0.0004336803,0.000005568503],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002892378,0.00009104427,0.00012383368,0.00008016755,0.00009764531,0.0000012332763,0.00003926731,8.439547e-7,0.9938279,0.00015953211,0.0048346147,0.00045469395],"study_design_scores_gemma":[0.00075120514,0.00024584914,0.0001767251,0.000049235863,0.000046974455,0.000018098299,0.0000130221615,0.000009388303,0.92632824,0.000095610776,0.07209362,0.00017202273],"about_ca_topic_score_codex":0.000030756906,"about_ca_topic_score_gemma":0.00007220996,"teacher_disagreement_score":0.06749964,"about_ca_system_score_codex":0.000024061517,"about_ca_system_score_gemma":0.00011912154,"threshold_uncertainty_score":0.9994723},"labels":[],"label_agreement":null},{"id":"W4391774909","doi":"10.7554/elife.92307.3","title":"Structural and biophysical analysis of a Haemophilus influenzae tripartite ATP-independent periplasmic (TRAP) transporter","year":2024,"lang":"en","type":"article","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"Marsden Fund; Biomolecular Interaction Centre, University of Canterbury; Ministry of Business, Innovation and Employment; Australian Institute of Nuclear Science and Engineering","keywords":"Periplasmic space; ATP-binding cassette transporter; Transporter; Structural biology; Chemistry; Biophysics; Cryo-electron microscopy; Biochemistry; Biology; Escherichia coli","score_opus":0.00888199524928399,"score_gpt":0.24430110119109563,"score_spread":0.23541910594181165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391774909","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99814487,0.0011430535,0.00008491849,0.00019922928,0.0001718646,0.00008418678,0.00011996182,0.00001902179,0.000032925323],"genre_scores_gemma":[0.9991617,0.00025119606,0.00013627858,0.000121814,0.00012741069,0.0000055925652,0.00010177128,0.000013688029,0.00008053034],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911016,0.000016921895,0.00023714297,0.00034586305,0.00011653066,0.00017339477],"domain_scores_gemma":[0.99963063,0.0000048606994,0.00003945892,0.00022578906,0.000036862373,0.000062386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006346494,0.00014061942,0.00024295328,0.00013805676,0.000028194207,0.000026715092,0.00011120291,0.00022102264,0.00003479754],"category_scores_gemma":[0.0000053891595,0.00011756285,0.00016869837,0.00027670374,0.00014075475,0.0000029927926,0.000052858573,0.00009408495,0.000002787709],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000069728594,0.000015467194,0.0017846298,0.00002570867,0.0006510636,0.0000074346995,0.000115333016,0.00004324601,0.9947185,0.0001485929,0.00005843304,0.002361882],"study_design_scores_gemma":[0.000473908,0.0004304941,0.09151846,0.000016722886,0.00078368146,0.000018658058,0.000042419477,0.003099944,0.8805622,0.000032709027,0.022730798,0.00029003798],"about_ca_topic_score_codex":0.00002682835,"about_ca_topic_score_gemma":0.00005719716,"teacher_disagreement_score":0.11415631,"about_ca_system_score_codex":0.000005570906,"about_ca_system_score_gemma":0.00003558284,"threshold_uncertainty_score":0.4794074},"labels":[],"label_agreement":null},{"id":"W4391818308","doi":"10.1101/2024.02.13.579886","title":"A selection of Golden Gate vectors to simplify recombinant protein production in <i>Escherichia coli</i>","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Plasmid; Escherichia coli; Periplasmic space; Cloning (programming); Fusion protein; Recombinant DNA; Insert (composites); Biology; Expression vector; Target protein; Gene; Cloning vector; Multiple cloning site; Vector (molecular biology); Molecular biology; Genetics; Computer science","score_opus":0.0079121775499925,"score_gpt":0.21304769280998587,"score_spread":0.20513551525999338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391818308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957201,0.00042311556,0.00004829893,0.00056452135,0.0016289616,0.0014528653,0.000068939546,0.00008879041,0.000004434975],"genre_scores_gemma":[0.9965007,0.00020409559,0.002252389,0.000062888554,0.00044092868,0.00040149956,0.0000013921466,0.00010893393,0.000027223361],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99756664,0.000109013316,0.0005636727,0.001150767,0.00016822114,0.00044167545],"domain_scores_gemma":[0.998562,0.000002980068,0.0002577084,0.00077285274,0.00028176818,0.00012270409],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044246812,0.0004306537,0.00045283278,0.00029988552,0.000041906544,0.000063259235,0.00037493685,0.0010113309,0.0000071846243],"category_scores_gemma":[0.00017335544,0.00045893688,0.00012109675,0.0007070563,0.00007944359,0.0000036320312,0.0007621422,0.00061412784,0.000018980749],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011704697,0.00013394884,0.0005013507,0.00041406788,0.00008536303,0.0000051752436,0.0000045769316,0.00007275885,0.99829984,0.000056523608,0.00029862084,0.000010729748],"study_design_scores_gemma":[0.00020526392,0.00037090498,0.0079622995,0.00038306956,0.000044502143,3.2754397e-8,0.0000015799617,0.000038110753,0.9821207,0.000009971892,0.008378557,0.0004849866],"about_ca_topic_score_codex":0.000098108234,"about_ca_topic_score_gemma":0.00004194222,"teacher_disagreement_score":0.016179116,"about_ca_system_score_codex":0.00012431802,"about_ca_system_score_gemma":0.00048409076,"threshold_uncertainty_score":0.99978626},"labels":[],"label_agreement":null},{"id":"W4391843376","doi":"10.1038/s41598-024-54508-9","title":"The NMR structure of the Orf63 lytic developmental protein from lambda bacteriophage","year":2024,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada; Narodowe Centrum Nauki","keywords":"Lytic cycle; Bacteriophage; Lambda; Computational biology; Biology; Virology; Genetics; Physics; Virus; Gene; Escherichia coli","score_opus":0.004237092348493536,"score_gpt":0.19864004202942542,"score_spread":0.19440294968093189,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391843376","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994236,0.0008492269,0.000013175194,0.00027889077,0.004136964,0.00027942102,0.000033168435,0.000014454253,0.00015872101],"genre_scores_gemma":[0.9960402,0.000011695365,0.00031307832,0.000016909578,0.00013242866,0.000007877015,0.00007463358,0.00001344552,0.0033897301],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987759,0.00003434252,0.00030643246,0.0004914386,0.00019104578,0.00020084201],"domain_scores_gemma":[0.9991176,0.0000060521706,0.00011537303,0.00067061547,0.00005778992,0.000032579057],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023974602,0.000120823745,0.000092292896,0.000024622504,0.00023842455,0.0002142029,0.00030293598,0.00016543252,0.000057023863],"category_scores_gemma":[0.00007415476,0.000064930406,0.00008686634,0.00021242877,0.00042864677,0.0000029954829,0.0003123122,0.00010753287,0.000004649015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000066681237,0.0000068491167,0.00022547127,0.000009969572,0.000032746066,0.0000142986,0.000032357133,0.0000010120348,0.99500066,0.000044312113,0.0018784364,0.0027472228],"study_design_scores_gemma":[0.00003040024,0.000018447961,0.0014050223,0.000024413806,0.0000086963455,0.000059557056,0.000025343366,0.0000071990557,0.79358053,0.0015145123,0.20325239,0.00007347304],"about_ca_topic_score_codex":0.000021327116,"about_ca_topic_score_gemma":0.00014720304,"teacher_disagreement_score":0.2014201,"about_ca_system_score_codex":0.000015661864,"about_ca_system_score_gemma":0.00028361866,"threshold_uncertainty_score":0.2647785},"labels":[],"label_agreement":null},{"id":"W4392715983","doi":"10.1128/msystems.00665-23","title":"A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria","year":2024,"lang":"en","type":"article","venue":"mSystems","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Health and Medical Research Council; Department of Education and Training; Bayerisches Staatsministerium für Bildung und Kultus, Wissenschaft und Kunst; Medical Research Council; Department of Health and Aged Care, Australian Government; Wellcome Trust","keywords":"Bacteria; Biology; Genomics; Computational biology; Antibiotics; DNA; Functional genomics; Genetics; Microbiology; Genome; Gene","score_opus":0.028041205440828842,"score_gpt":0.2808856712485654,"score_spread":0.25284446580773656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392715983","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7084009,0.00006766769,0.2878147,0.00044509617,0.0012613473,0.0010409823,0.0002606304,0.000050300117,0.00065833004],"genre_scores_gemma":[0.9885197,0.00000880251,0.009360902,0.0002831433,0.00046490054,0.00014060704,0.00047708553,0.000043459968,0.0007013836],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871814,0.000061721395,0.0002840629,0.00055230444,0.00007905983,0.0003047142],"domain_scores_gemma":[0.9995041,0.000034262368,0.000037032187,0.00026867044,0.000051787,0.00010416206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035104933,0.00020132978,0.00024655028,0.000112216156,0.000056911907,0.00011994555,0.00014436821,0.0003351194,0.000031652748],"category_scores_gemma":[0.00001843333,0.00018670004,0.00008078056,0.00022537052,0.000024517469,0.0000022855859,0.000102903614,0.00008104501,0.00010878152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021171896,0.00003562669,0.00045661302,0.00004782625,0.00006309727,0.0000028069235,0.000048944814,0.00038098788,0.9872066,0.000523706,0.00618274,0.0048393523],"study_design_scores_gemma":[0.00029983028,0.00020948975,0.00058725855,0.000037756585,0.00001915567,0.000028614944,0.00006828778,0.0007053853,0.74493384,0.000021083733,0.25286186,0.00022741947],"about_ca_topic_score_codex":0.00007709356,"about_ca_topic_score_gemma":0.00030790383,"teacher_disagreement_score":0.2801188,"about_ca_system_score_codex":0.000071207214,"about_ca_system_score_gemma":0.00009475312,"threshold_uncertainty_score":0.7613406},"labels":[],"label_agreement":null},{"id":"W4392813996","doi":"10.1101/2024.03.13.584740","title":"A vector system for single and tandem expression of cloned genes and multi-colour fluorescent tagging in <i>Haloferax volcanii</i>","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"University of Technology Sydney","keywords":"Haloferax volcanii; Biology; mCherry; FtsZ; Fusion protein; Multiple cloning site; Computational biology; Expression vector; Gene; Green fluorescent protein; Plasmid; Cell biology; Genetics; Escherichia coli; Recombinant DNA","score_opus":0.011446889781135951,"score_gpt":0.21319317681465952,"score_spread":0.20174628703352357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392813996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98645353,0.011177229,0.0003441973,0.00010723818,0.0007131135,0.0008523154,0.00029161223,0.000059893242,8.756965e-7],"genre_scores_gemma":[0.9915189,0.0009061175,0.0070333052,0.00003216219,0.00025234526,0.00016740315,0.0000018155301,0.00008581776,0.0000020959287],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99807465,0.00006580456,0.00047120333,0.00092314073,0.00010592167,0.00035929098],"domain_scores_gemma":[0.99893415,0.000016055434,0.0002463237,0.0005184255,0.00017180214,0.0001132489],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003101006,0.00039130525,0.0005075106,0.00016691079,0.000059650567,0.00008177533,0.00022109272,0.0009343717,6.6230746e-7],"category_scores_gemma":[0.00007292601,0.00038594808,0.000086671695,0.00012348722,0.00012961,0.0000032552382,0.00091404794,0.000267661,5.5538135e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000082690996,0.000088601235,0.001297119,0.001354918,0.000057569418,0.0000106199495,0.0000066936504,0.0000054563907,0.99697363,0.000074572665,0.000030647378,0.00001748372],"study_design_scores_gemma":[0.00083404535,0.00020787866,0.0032851226,0.0007822981,0.00006816084,1.477666e-7,0.000009724044,0.00036838945,0.99243456,0.0000012124074,0.0016076141,0.0004008597],"about_ca_topic_score_codex":0.000030243802,"about_ca_topic_score_gemma":0.000013913095,"teacher_disagreement_score":0.0102711115,"about_ca_system_score_codex":0.00006699974,"about_ca_system_score_gemma":0.00017929492,"threshold_uncertainty_score":0.9998592},"labels":[],"label_agreement":null},{"id":"W4392820966","doi":"10.1007/978-1-0716-3734-0_6","title":"Examining Protein Translocation by β-Barrel Membrane Proteins Using Reconstituted Proteoliposomes","year":2024,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"March of Dimes Canada; MaRS; University of Toronto","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Intermembrane space; Translocase of the outer membrane; Membrane protein; Cell biology; Translocase of the inner membrane; Peripheral membrane protein; Biology; Mitochondrial membrane transport protein; Inner membrane; Vesicle-associated membrane protein 8; Lipid bilayer; Biochemistry; Membrane; Integral membrane protein; Mitochondrion; Escherichia coli","score_opus":0.02936491161877818,"score_gpt":0.3479299300363834,"score_spread":0.3185650184176052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392820966","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.43433163,0.00454755,0.5595408,0.00023281752,0.00029307202,0.00085415394,0.000025320414,0.000051024166,0.00012365068],"genre_scores_gemma":[0.31412515,0.0002316084,0.68466115,0.00012659487,0.00013462322,0.00033111766,0.00019142147,0.00006165051,0.00013668415],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997423,0.00071345846,0.0004759087,0.00085263094,0.00007025204,0.00046475918],"domain_scores_gemma":[0.99933344,0.000019078969,0.00008218678,0.00044511992,0.000051266772,0.00006891379],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00096881256,0.0003065144,0.00033067729,0.00023111321,0.000058200694,0.00004694263,0.00031645445,0.00081502047,0.00002549142],"category_scores_gemma":[0.0002089582,0.0002919289,0.00009462921,0.00040564372,0.0002896251,0.0000056002577,0.00012265304,0.0003219706,0.000004321381],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045548964,0.000043097698,0.00005727592,0.000066884975,0.000068290035,0.000013877736,0.000024261737,0.000026092328,0.9638886,0.00088194513,0.000012184319,0.034871962],"study_design_scores_gemma":[0.00037047872,0.0003722532,0.000009262344,0.00009897655,0.000018709057,0.00005394755,0.000020471325,0.00085127656,0.98007005,0.0009795855,0.016807655,0.00034733195],"about_ca_topic_score_codex":0.00006955255,"about_ca_topic_score_gemma":0.000018498155,"teacher_disagreement_score":0.12512034,"about_ca_system_score_codex":0.0000380762,"about_ca_system_score_gemma":0.00018918373,"threshold_uncertainty_score":0.99995327},"labels":[],"label_agreement":null},{"id":"W4392898324","doi":"10.1101/2024.03.16.585348","title":"“Multiplexed screen identifies a <i>Pseudomonas aeruginosa</i> -specific small molecule targeting the outer membrane protein OprH and its interaction with LPS”","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Illinois at Urbana-Champaign; National Institutes of Health; Cystic Fibrosis Canada; Georgia Institute of Technology","keywords":"Pseudomonas aeruginosa; Bacterial outer membrane; Small molecule; Cell biology; Chemistry; Membrane; Multiplexing; Microbiology; Biophysics; Nanotechnology; Bacteria; Biology; Computer science; Biochemistry; Materials science; Genetics; Escherichia coli; Telecommunications; Gene","score_opus":0.010889994522627115,"score_gpt":0.2021095290130204,"score_spread":0.19121953449039328,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392898324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903265,0.0061541586,0.0001859928,0.00088406197,0.00080219196,0.0012874672,0.00020120121,0.00014633464,0.000012086351],"genre_scores_gemma":[0.9952364,0.001070176,0.0021956689,0.00014829154,0.0008272526,0.0003258024,0.0000066423127,0.00015135134,0.00003843324],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99730307,0.0001421578,0.00048075707,0.0013278318,0.00022081086,0.0005253505],"domain_scores_gemma":[0.9982225,0.000015782538,0.00032175446,0.0009543651,0.00034637787,0.00013927025],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042980103,0.00063454325,0.0004238033,0.00014870947,0.00019651784,0.0004749288,0.00058884115,0.0008376938,0.00001159214],"category_scores_gemma":[0.00007458958,0.00048981054,0.0001366367,0.0002347649,0.00021242627,0.000009046018,0.0015239059,0.0008948977,0.000025654432],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016278237,0.00005061771,0.000050216386,0.00026563174,0.00024773358,0.000044687295,0.000010128082,0.000016496571,0.99873406,0.00015999297,0.0002499171,0.000007733442],"study_design_scores_gemma":[0.0004174299,0.00015807271,0.00038652195,0.0003341221,0.000097883654,4.2856007e-7,0.000011527935,0.00012072044,0.9823545,0.0000029041062,0.015475872,0.0006400021],"about_ca_topic_score_codex":0.000047332214,"about_ca_topic_score_gemma":0.000024939869,"teacher_disagreement_score":0.016379548,"about_ca_system_score_codex":0.00004596884,"about_ca_system_score_gemma":0.00019321303,"threshold_uncertainty_score":0.9997554},"labels":[],"label_agreement":null},{"id":"W4392950477","doi":"10.1099/mgen.0.001215","title":"Conserved patterns of sequence diversification provide insight into the evolution of two-component systems in Enterobacteriaceae","year":2024,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta; Universities Space Research Association","keywords":"Biology; Conserved sequence; Genetics; Evolutionary biology; Enterobacteriaceae; Molecular evolution; Sequence (biology); Phylogenetics; Gene; Computational biology; Peptide sequence; Escherichia coli","score_opus":0.011565455155522996,"score_gpt":0.21912318153702715,"score_spread":0.20755772638150416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392950477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99675536,0.0014072927,0.000745874,0.00014935495,0.00051434,0.00030613018,0.00010211445,0.0000069369853,0.000012582718],"genre_scores_gemma":[0.99922085,0.0003415769,0.00016677534,0.000014818469,0.00008178617,0.000008842434,0.00012033343,0.00001152566,0.00003348385],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992033,0.000070592294,0.00032312173,0.00023786542,0.00004167049,0.00012344115],"domain_scores_gemma":[0.999538,0.000007720406,0.00011117051,0.0002727542,0.000053878815,0.00001645314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016565082,0.00010464117,0.0001404005,0.00006922021,0.000023980276,0.000022736154,0.00024070333,0.00014539804,0.0000027152398],"category_scores_gemma":[0.00000887475,0.00008612102,0.000057667337,0.000086160326,0.00010823154,0.0000032758908,0.00015830107,0.00007510081,0.0000024593928],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006448993,0.00003150358,0.0023900028,0.00010942755,0.000032899436,0.0000010880254,0.00038028776,0.00011252256,0.99588305,0.00033913858,0.000018224313,0.0006373738],"study_design_scores_gemma":[0.0003354433,0.00013871174,0.0030909523,0.000084899686,0.00002112324,0.000012273201,0.00017077342,0.00031402815,0.98134923,0.000029452536,0.014340808,0.00011232291],"about_ca_topic_score_codex":0.0019900561,"about_ca_topic_score_gemma":0.0005838953,"teacher_disagreement_score":0.01453383,"about_ca_system_score_codex":0.00010424164,"about_ca_system_score_gemma":0.00012089054,"threshold_uncertainty_score":0.35119134},"labels":[],"label_agreement":null},{"id":"W4392967223","doi":"10.1101/2024.03.18.585515","title":"A widespread family of ribosomal peptide metallophores involved in bacterial adaptation to metal stress","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nautical Research Society","funders":"Agence Nationale de la Recherche; Institut Chevreul; Conseil Régional Midi-Pyrénées; European Regional Development Fund; Muséum National d'Histoire Naturelle; Centre National de la Recherche Scientifique","keywords":"Periplasmic space; Signal peptide; Peptide; Bacteria; Biochemistry; Chemistry; Peptide sequence; Biology; Gene; Genetics; Escherichia coli; Computational biology","score_opus":0.013290960057391847,"score_gpt":0.21922834135981778,"score_spread":0.20593738130242592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392967223","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943478,0.0017183771,0.00016657307,0.00013458983,0.0018172484,0.00071531325,0.0010282776,0.00006478922,0.000007030468],"genre_scores_gemma":[0.99269307,0.00039528898,0.0060106306,0.00006907443,0.0005361618,0.00016551562,0.000010793581,0.00011280065,0.000006696918],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99724895,0.00013350234,0.0007501006,0.00113651,0.00025238516,0.00047857864],"domain_scores_gemma":[0.99824905,0.000016282518,0.00029157096,0.0009870273,0.00029094907,0.00016510932],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00037709583,0.0005443701,0.0006560403,0.0004058697,0.000033630105,0.00010109698,0.0006300843,0.0010908319,0.000012746643],"category_scores_gemma":[0.00021163815,0.0005715684,0.00022912733,0.00041313356,0.00014407535,0.000005589947,0.0014882963,0.0004890549,0.000018696217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023143426,0.00012569857,0.0004975175,0.00024659163,0.0002512242,0.000022262735,0.0000128977235,0.00014438381,0.99820983,0.00014621424,0.00010274298,0.000009224339],"study_design_scores_gemma":[0.00044551506,0.0003086002,0.017349826,0.0003298688,0.00013014399,1.7622959e-8,0.00001236852,0.0000940952,0.9770784,0.0000085538995,0.0036590102,0.00058364036],"about_ca_topic_score_codex":0.0002767782,"about_ca_topic_score_gemma":0.00018625698,"teacher_disagreement_score":0.021131448,"about_ca_system_score_codex":0.000071498434,"about_ca_system_score_gemma":0.0005786964,"threshold_uncertainty_score":0.9996736},"labels":[],"label_agreement":null},{"id":"W4393197237","doi":"10.3389/fmicb.2024.1373344","title":"SOS genes are rapidly induced while translesion synthesis polymerase activity is temporally regulated","year":2024,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Norges Teknisk-Naturvitenskapelige Universitet","keywords":"SOS response; Repressor lexA; DNA repair; Biology; Gene; DNA damage; Mutagenesis; Escherichia coli; DNA mismatch repair; Genetics; Transcriptome; Stringent response; DNA; Computational biology; Gene expression; Cell biology; Mutation; Repressor","score_opus":0.009057005834704661,"score_gpt":0.21520300351289365,"score_spread":0.20614599767818897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393197237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98709905,0.008082601,0.0008575235,0.0017349296,0.0016170825,0.00027323954,0.00022632936,0.000059138278,0.00005009801],"genre_scores_gemma":[0.996157,0.0012927708,0.0015724483,0.0002748427,0.00020107401,0.00003690627,0.00013586621,0.00004668754,0.0002823857],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982358,0.00017014847,0.0003019757,0.0007932292,0.000040406798,0.000458438],"domain_scores_gemma":[0.9993563,0.000012830096,0.00008669062,0.0004423845,0.000037434478,0.000064330976],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019424039,0.00030522235,0.00038965183,0.00025047487,0.00006766029,0.00003563561,0.00033516748,0.0010837725,0.000058102738],"category_scores_gemma":[0.000023174363,0.0002833936,0.00015597242,0.00026305582,0.00018981544,0.0000060927723,0.00012176524,0.0002443706,0.000015130022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021707542,0.000069957,0.0010705815,0.000042631134,0.00012030438,0.000025063171,0.000035451154,0.0000023030746,0.9482257,0.0000041474436,0.011817987,0.038368817],"study_design_scores_gemma":[0.00031113336,0.00021047301,0.0008692654,0.00005440595,0.00003058753,0.000049645976,0.00005035317,0.000050179016,0.934846,0.000045591296,0.0631536,0.00032878082],"about_ca_topic_score_codex":0.000046325295,"about_ca_topic_score_gemma":0.00006963765,"teacher_disagreement_score":0.05133561,"about_ca_system_score_codex":0.000037677277,"about_ca_system_score_gemma":0.0001209557,"threshold_uncertainty_score":0.9999618},"labels":[],"label_agreement":null},{"id":"W4393226541","doi":"10.1016/j.isci.2024.109592","title":"The inactivation of tolC sensitizes Escherichia coli to perturbations in lipopolysaccharide transport","year":2024,"lang":"en","type":"article","venue":"iScience","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Guelph","funders":"Canadian Institutes of Health Research; Fonds De La Recherche Scientifique - FNRS; Canada Foundation for Innovation; Ontario Research Foundation; University of Guelph; Natural Sciences and Engineering Research Council of Canada; Université Catholique de Louvain","keywords":"Escherichia coli; Lipopolysaccharide; Chemistry; Biophysics; Microbiology; Escherichia coli Proteins; Cell biology; Biochemistry; Biology; Immunology; Gene","score_opus":0.008169497774041074,"score_gpt":0.24216212421173283,"score_spread":0.23399262643769175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393226541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960452,0.00034269175,0.0010231195,0.0020055396,0.00023175785,0.000101138576,0.000007545327,0.000007940428,0.00023507462],"genre_scores_gemma":[0.99900544,0.00012554134,0.00044010382,0.00009920459,0.000045251032,0.000009710101,0.0000040618825,0.000004236138,0.00026643038],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995,0.000012272933,0.00012224707,0.00017891695,0.00006759493,0.00011899056],"domain_scores_gemma":[0.9997628,0.000012828665,0.000017641398,0.00015162543,0.000032773845,0.000022375492],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001510063,0.000052627835,0.000051754,0.000040304632,0.000049882943,0.000018978826,0.0001454742,0.000069469956,0.000002535396],"category_scores_gemma":[0.00005227705,0.000037725087,0.000023380302,0.00023411252,0.0001046279,0.0000028941631,0.000036147838,0.000049364866,0.0000025151912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011052238,0.000008173924,0.00014479544,0.0000035840303,0.0000026632038,8.082811e-7,0.00007868815,0.0000336522,0.9923372,0.0012768046,0.00007233332,0.0060302434],"study_design_scores_gemma":[0.00003558215,0.00010590345,0.0074497447,0.000012824976,0.0000024493825,0.0000022266493,0.00009262978,0.00025047307,0.97061014,0.00013882341,0.021240985,0.000058205773],"about_ca_topic_score_codex":0.00006235567,"about_ca_topic_score_gemma":0.0002959611,"teacher_disagreement_score":0.02172705,"about_ca_system_score_codex":0.000008661321,"about_ca_system_score_gemma":0.00007916377,"threshold_uncertainty_score":0.15383844},"labels":[],"label_agreement":null},{"id":"W4393928117","doi":"10.1016/j.celrep.2024.114053","title":"A platform for predicting mechanism of action based on bacterial transcriptional responses identifies an unusual DNA gyrase inhibitor","year":2024,"lang":"en","type":"article","venue":"Cell Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Glycomics Network; Canadian Institutes of Health Research; Ontario Research Foundation; University of Oklahoma","keywords":"DNA gyrase; Mechanism (biology); DNA; Mechanism of action; Computational biology; Cell biology; Chemistry; Biology; Genetics; Gene; Escherichia coli","score_opus":0.01978624286057704,"score_gpt":0.26203323594977096,"score_spread":0.24224699308919392,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393928117","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99485874,0.000071110655,0.002198202,0.000056188022,0.0022837801,0.00027809024,0.00012684414,0.00003924599,0.00008779568],"genre_scores_gemma":[0.99781847,0.000020343525,0.0004954833,0.000026720165,0.000676576,0.000041199295,0.00053284067,0.000026903968,0.00036145866],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989429,0.000023288303,0.0003377943,0.00040620053,0.00012278437,0.00016703196],"domain_scores_gemma":[0.99948776,0.000019987252,0.00011421856,0.00025753232,0.00006891437,0.000051598883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026896544,0.0001388202,0.00013018699,0.00010378278,0.000063106665,0.000047516132,0.00006419905,0.00031119812,0.000024109599],"category_scores_gemma":[0.00006635723,0.0001302899,0.00011859152,0.000058798043,0.000054143264,0.000008045263,0.000022607837,0.00007232318,6.775659e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006994716,0.00009117275,0.00001695144,0.000105634244,0.000019475596,0.000024477526,0.000023117564,0.000013235824,0.9974779,0.00011674001,0.00016067442,0.0012511438],"study_design_scores_gemma":[0.00027617055,0.0012121897,0.000116060946,0.00003803318,0.00003531099,0.00004431636,0.00004317263,0.0005140672,0.9866,0.00040007062,0.01058733,0.00013328162],"about_ca_topic_score_codex":0.0000068398035,"about_ca_topic_score_gemma":0.000020115156,"teacher_disagreement_score":0.010877908,"about_ca_system_score_codex":0.000015239756,"about_ca_system_score_gemma":0.00015185177,"threshold_uncertainty_score":0.5313068},"labels":[],"label_agreement":null},{"id":"W4394724444","doi":"10.1101/2024.04.10.588480","title":"Phenotypic and Transcriptomic Characterization of ElyC-Defective <i>Escherichia coli</i> Cells Reveal the Importance of ElyC in Cell Envelope Biology at Optimal and Sub-Optimal Temperatures","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Université de Montréal; Natural Sciences and Engineering Research Council of Canada; Knut och Alice Wallenbergs Stiftelse; Vetenskapsrådet; Kempe Foundation","keywords":"Escherichia coli; Phenotype; Biology; Envelope (radar); Transcriptome; Cell envelope; Characterization (materials science); Cell; Computational biology; Genetics; Cell biology; Gene; Nanotechnology; Gene expression; Computer science; Materials science","score_opus":0.0047623259523803686,"score_gpt":0.18893253278338107,"score_spread":0.1841702068310007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394724444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939873,0.0040814485,0.000055107696,0.00011507949,0.00042524232,0.0006309772,0.0006814969,0.000020724925,0.0000026126],"genre_scores_gemma":[0.9953992,0.0033429374,0.00088812184,0.000091788745,0.00013615019,0.0000651352,0.000007663768,0.000063559215,0.000005454706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99806595,0.00013661203,0.0005463658,0.00083997985,0.000087940374,0.00032318116],"domain_scores_gemma":[0.998856,0.000016739037,0.0003695955,0.000537142,0.0001482616,0.000072270625],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032200332,0.0004105881,0.00053245446,0.00012243137,0.000056194433,0.000037334292,0.0002949058,0.0008914065,0.000003865335],"category_scores_gemma":[0.000024204424,0.00035336125,0.00008985679,0.00021521856,0.00043169645,0.000004810243,0.0006402222,0.00048973446,9.591442e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002368491,0.00006188825,0.0056930427,0.00039619664,0.000093263945,0.000004105149,0.000028126693,0.000007817512,0.9933789,0.00008042694,0.000016300593,0.0000030837778],"study_design_scores_gemma":[0.00040900728,0.00022092953,0.068843514,0.00008779616,0.000080774866,7.934375e-8,0.0000043684504,0.000036793874,0.9292383,0.0000029816736,0.0007510602,0.00032437744],"about_ca_topic_score_codex":0.000018227132,"about_ca_topic_score_gemma":0.000013773575,"teacher_disagreement_score":0.06414058,"about_ca_system_score_codex":0.000037948037,"about_ca_system_score_gemma":0.00024213799,"threshold_uncertainty_score":0.9998918},"labels":[],"label_agreement":null},{"id":"W4394753009","doi":"10.1016/j.jbc.2024.107265","title":"The sensor of the bacterial histidine kinase CpxA is a novel dimer of extracytoplasmic Per-ARNT-Sim domains","year":2024,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Canadian Light Source","keywords":"Histidine kinase; Two-component regulatory system; Biology; Transmembrane domain; Operon; Response regulator; Dimer; Sigma factor; Biochemistry; Genetics; Mutant; Escherichia coli; Cell biology; Chemistry; Gene; RNA polymerase","score_opus":0.012997955269168044,"score_gpt":0.23765820061929854,"score_spread":0.2246602453501305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394753009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99550617,0.0023465336,0.000082708335,0.0011887053,0.0005451674,0.00007362768,0.00012057981,0.0000045754086,0.00013192599],"genre_scores_gemma":[0.99753124,0.0010548604,0.00038933297,0.000060456776,0.0006301559,0.0000020799139,0.000010287907,0.000012203237,0.00030939857],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99876326,0.000041310384,0.00060323783,0.0002189517,0.00015484296,0.00021837871],"domain_scores_gemma":[0.99898005,0.000065957815,0.00038492103,0.00034269638,0.00016324529,0.00006315159],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031776578,0.00018071808,0.0002848317,0.000016624119,0.000066831475,0.000024149167,0.00054045673,0.00047556133,0.00009953536],"category_scores_gemma":[0.00024012734,0.000087723725,0.00037201316,0.00010532057,0.00054459786,0.0000026420355,0.00023666983,0.00031367937,0.0000012062287],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028998623,0.00009295269,0.00023902293,0.000046085883,0.000121074954,0.0000041791486,0.0000128354595,0.0000022172146,0.9973616,0.000036650563,0.0007381462,0.0010552229],"study_design_scores_gemma":[0.0003615801,0.00031649065,0.000876659,0.00004814825,0.000044485605,0.00019589692,0.00004389969,0.0000097521915,0.9026921,0.00008844795,0.09521878,0.00010381043],"about_ca_topic_score_codex":0.0000027524045,"about_ca_topic_score_gemma":0.0000010458423,"teacher_disagreement_score":0.09466957,"about_ca_system_score_codex":0.000019469919,"about_ca_system_score_gemma":0.00014095166,"threshold_uncertainty_score":0.36679646},"labels":[],"label_agreement":null},{"id":"W4395462614","doi":"10.1101/2024.04.24.590444","title":"Horizontally acquired HosA transcription factor bound with 4-hydroxy-benzoic acid exhibits unique tug-of-water dynamics","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tellabs (Canada)","funders":"","keywords":"Transcription factor; Benzoic acid; Dynamics (music); Transcription (linguistics); Factor (programming language); Chemistry; Computer science; Physics; Biochemistry","score_opus":0.006809339744428464,"score_gpt":0.19444248154266286,"score_spread":0.1876331417982344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4395462614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99362236,0.0015935859,0.0011133825,0.00030643554,0.0012803825,0.00076887914,0.0011370368,0.00016741561,0.000010532372],"genre_scores_gemma":[0.99660426,0.00062697724,0.0018732015,0.000067393536,0.00045560254,0.000118098964,0.000027448703,0.0002063355,0.000020697062],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970197,0.00009901521,0.0006135117,0.0013212415,0.0002774073,0.0006691309],"domain_scores_gemma":[0.9978258,0.000005031795,0.00026576238,0.001327044,0.00037825035,0.00019812012],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00022924243,0.00076533353,0.00064758054,0.00025232128,0.00009300751,0.00018126168,0.00065053476,0.0018206184,0.000023997944],"category_scores_gemma":[0.000022021311,0.0006412573,0.00024910457,0.00023940761,0.0003149523,0.000008929591,0.0006956954,0.0005645629,0.000020792872],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017766893,0.00011459373,0.00028267203,0.00048619736,0.00038514417,0.000034222532,0.000009979909,0.000012458253,0.9982092,0.00022594897,0.00004522948,0.000016682168],"study_design_scores_gemma":[0.0004988837,0.0006940159,0.0024964446,0.00027681555,0.00018674266,2.2724129e-7,0.0000030658084,0.000111769514,0.9908162,0.000010413993,0.004056099,0.00084933377],"about_ca_topic_score_codex":0.000055937613,"about_ca_topic_score_gemma":0.000069155096,"teacher_disagreement_score":0.007393014,"about_ca_system_score_codex":0.00014804573,"about_ca_system_score_gemma":0.0006427125,"threshold_uncertainty_score":0.99960387},"labels":[],"label_agreement":null},{"id":"W4395662093","doi":"10.1371/journal.pone.0300634","title":"Overexpression of the flagellar motor protein MotB sensitizes Bacillus subtilis to aminoglycosides in a motility-independent manner","year":2024,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Institute of Genetics; Ryobi Teien Memory Foundation; Ichiro Kanehara Foundation for the Promotion of Medical Sciences and Medical Care; Takeda Science Foundation","keywords":"Bacillus subtilis; Flagellum; Motility; Aminoglycoside; Cell biology; Mutant; Chemistry; Biology; Antibiotics; Microbiology; Biochemistry; Bacteria; Genetics; Gene","score_opus":0.014610805856102584,"score_gpt":0.20581642876100906,"score_spread":0.19120562290490647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4395662093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980418,0.0003943308,0.000017996348,0.00061407615,0.00006780462,0.00063821644,0.0000808332,0.000018621478,0.00012632976],"genre_scores_gemma":[0.99783474,0.000064114734,0.0007884956,0.000071032235,0.00010999925,0.000041056104,0.000014952994,0.000021918535,0.0010536858],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988673,0.000071765266,0.00024104658,0.00039519923,0.00020163256,0.00022307623],"domain_scores_gemma":[0.9993514,0.000008135911,0.0000401058,0.0004905825,0.000059596598,0.000050199633],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001512494,0.00014974357,0.00018701969,0.00007161926,0.000029888666,0.000025392124,0.00023582135,0.00027967067,0.000024922056],"category_scores_gemma":[0.00010004693,0.00010986947,0.000078623576,0.00015472394,0.000071862705,0.0000025650645,0.0003616232,0.00014541639,0.000011519159],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086180815,0.00023214796,0.00024745832,0.00015325539,0.00005623716,0.0000049766873,0.000045488992,0.000005519376,0.9984697,0.00002829648,0.000058860955,0.00061185],"study_design_scores_gemma":[0.00017421084,0.00026033825,0.0048185894,0.0003916885,0.000020796486,0.0000027245906,0.000027103386,0.00014918928,0.9930164,0.00011071849,0.0009127598,0.000115482406],"about_ca_topic_score_codex":0.00004901889,"about_ca_topic_score_gemma":0.00008032277,"teacher_disagreement_score":0.0054533295,"about_ca_system_score_codex":0.000021146998,"about_ca_system_score_gemma":0.000046112436,"threshold_uncertainty_score":0.4480347},"labels":[],"label_agreement":null},{"id":"W4398766968","doi":"10.1099/mic.0.001461","title":"A vector system for single and tandem expression of cloned genes and multi-colour fluorescent tagging in Haloferax volcanii","year":2024,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Australian Research Council; University of Technology Sydney","keywords":"Haloferax volcanii; Biology; FtsZ; mCherry; Fusion protein; Computational biology; Gene; Green fluorescent protein; Multiple cloning site; Expression vector; Plasmid; Cell biology; Genetics; Escherichia coli; Recombinant DNA","score_opus":0.0102858712192428,"score_gpt":0.2245145319804961,"score_spread":0.2142286607612533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398766968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888567,0.009715901,0.0005581075,0.00015635918,0.00030664905,0.00029283247,0.00009073299,0.000017759294,0.000004992588],"genre_scores_gemma":[0.9967725,0.00032846152,0.0026326512,0.000031416825,0.000077906196,0.000026221423,0.000081170576,0.00001753481,0.000032097796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991373,0.000043862918,0.00021994983,0.0003764135,0.000012788491,0.00020971791],"domain_scores_gemma":[0.9997471,0.000016794951,0.00004853425,0.00012699541,0.00003116666,0.000029433852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001241559,0.0001338221,0.00021746432,0.00007640229,0.000033154156,0.00001517157,0.00007786405,0.00036266065,0.0000014599302],"category_scores_gemma":[0.000020034,0.0001138875,0.000036974605,0.00004876057,0.000120649886,0.0000017034492,0.00014410936,0.000060822684,4.3934037e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007391713,0.00003548324,0.0005660387,0.00019036753,0.000020111407,0.0000038610383,0.00004111991,0.0000012307297,0.99652153,0.000063515836,0.00007764904,0.0024051436],"study_design_scores_gemma":[0.0006736693,0.00040724952,0.00034915042,0.00010743829,0.000013460186,0.00009714122,0.000069832975,0.00013868441,0.98624736,0.0000058786277,0.0117638465,0.00012629022],"about_ca_topic_score_codex":0.000019711344,"about_ca_topic_score_gemma":0.00007943286,"teacher_disagreement_score":0.0116861975,"about_ca_system_score_codex":0.000017123832,"about_ca_system_score_gemma":0.000029429128,"threshold_uncertainty_score":0.46441975},"labels":[],"label_agreement":null},{"id":"W4399067453","doi":"10.1016/j.jbc.2024.107420","title":"Klebsiella pneumoniae O-polysaccharide biosynthesis highlights the diverse organization of catalytic modules in ABC transporter-dependent glycan assembly","year":2024,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Guelph","funders":"Canadian Glycomics Network; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Glycosyltransferase; Glycan; Biology; Biochemistry; Escherichia coli; Terminator (solar); Klebsiella pneumoniae; Polymerase; Operon; Enzyme; Gene; Glycoprotein","score_opus":0.0111392698696121,"score_gpt":0.22048144076725912,"score_spread":0.209342170897647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399067453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977007,0.0009629904,0.00011469444,0.0008914495,0.00017790802,0.000061007,0.000036377365,0.0000085009,0.00004636598],"genre_scores_gemma":[0.99756706,0.0019910755,0.00007875773,0.000030870564,0.00023742934,0.0000013265692,0.000021437245,0.000012579051,0.000059450365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892306,0.000033978344,0.00048851175,0.00023787255,0.00013113952,0.00018545227],"domain_scores_gemma":[0.9993884,0.0000388723,0.00019987777,0.00021221174,0.00010317083,0.000057485122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024180244,0.00016286122,0.00025377856,0.000045819837,0.00003340046,0.000026530875,0.00040741274,0.0004136774,0.000040853545],"category_scores_gemma":[0.000117355325,0.00009663115,0.00013455619,0.00020077269,0.00015993633,0.0000047371464,0.00008050687,0.0002105563,0.000002117047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044726934,0.000072633695,0.0023816987,0.00004092531,0.00007054922,0.000045936966,0.000024878349,0.000014108058,0.9958151,0.000025515892,0.000050191436,0.0014137523],"study_design_scores_gemma":[0.00018147797,0.00016485917,0.0056993687,0.000054857006,0.000039578907,0.00012270275,0.00010294421,0.000016165,0.99178433,0.000061223385,0.0016486188,0.00012384716],"about_ca_topic_score_codex":0.000011796322,"about_ca_topic_score_gemma":0.00001042885,"teacher_disagreement_score":0.004030726,"about_ca_system_score_codex":0.000027060974,"about_ca_system_score_gemma":0.00007622046,"threshold_uncertainty_score":0.3940504},"labels":[],"label_agreement":null},{"id":"W4399867320","doi":"10.1101/2024.06.19.599759","title":"Structural architecture of TolQ-TolR inner membrane protein complex from opportunistic pathogen <i>Acinetobacter baumannii</i>","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Calgary","funders":"","keywords":"Acinetobacter baumannii; Opportunistic pathogen; Microbiology; Acinetobacter; Pathogen; Biology; Computational biology; Bacteria; Genetics; Pseudomonas aeruginosa; Antibiotics","score_opus":0.013821915367572326,"score_gpt":0.2117012267411134,"score_spread":0.1978793113735411,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399867320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904226,0.0013742765,0.0001864692,0.00043055048,0.0009953167,0.0009028405,0.005541709,0.00012800057,0.000018225279],"genre_scores_gemma":[0.9928162,0.00014745172,0.0053777057,0.00020575269,0.0010671244,0.000116127085,0.000070465576,0.00017618453,0.000022952434],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99676365,0.00013899054,0.0007764659,0.0014419601,0.0002981945,0.0005807635],"domain_scores_gemma":[0.99719626,0.000012742915,0.00046769765,0.0017526028,0.00033555014,0.00023517571],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00021921325,0.00078104687,0.0008041613,0.00019784234,0.00008033061,0.0001355165,0.0009675638,0.0015080144,0.00012824626],"category_scores_gemma":[0.00008251839,0.00072972424,0.00028757448,0.00020899596,0.000323148,0.0000037199827,0.0020514089,0.0008940296,0.000026218077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011436226,0.000049500803,0.00020784837,0.0004510608,0.00035648706,0.000048767426,0.000005093044,0.000022264725,0.9982041,0.00019861542,0.0003159846,0.000025923493],"study_design_scores_gemma":[0.00045885603,0.00020852913,0.005620792,0.00026737992,0.00020165858,1.4247638e-7,0.0000019339802,0.00011019878,0.9658565,0.000045464683,0.026351111,0.0008774598],"about_ca_topic_score_codex":0.00009779702,"about_ca_topic_score_gemma":0.000018517429,"teacher_disagreement_score":0.03234762,"about_ca_system_score_codex":0.00004887756,"about_ca_system_score_gemma":0.0005042849,"threshold_uncertainty_score":0.9997882},"labels":[],"label_agreement":null},{"id":"W4399939543","doi":"10.1371/journal.pgen.1011335","title":"Genetic evidence for functional diversification of gram-negative intermembrane phospholipid transporters","year":2024,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; University of Alberta","keywords":"Cardiolipin; Biology; Phospholipid; Fatty acid; Biochemistry; Oleic acid; Bacterial outer membrane; Membrane; Gene; Escherichia coli","score_opus":0.04342597975155962,"score_gpt":0.2634724796009354,"score_spread":0.22004649984937577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399939543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98759353,0.003435281,0.0074581103,0.00025390447,0.0006046807,0.00043111225,0.00016203118,0.000028256774,0.000033111355],"genre_scores_gemma":[0.99446523,0.0016322525,0.0031192189,0.00007437865,0.00032108807,0.000056929715,0.00011040198,0.000031169933,0.0001893124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988853,0.000022122591,0.00029945734,0.00044572915,0.00013513745,0.00021226144],"domain_scores_gemma":[0.999351,0.000043317123,0.000075933945,0.00031865854,0.00015455061,0.000056535453],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000083420506,0.00017077618,0.00016086243,0.00007500395,0.00004657415,0.000025118103,0.00022582909,0.0002388224,0.00003441694],"category_scores_gemma":[0.00005980242,0.00016650015,0.00014676484,0.0001339355,0.00018606146,0.000003816124,0.000056280274,0.00007854618,0.0000068779077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020816346,0.000060714254,0.00067415583,0.00018737892,0.00015046011,0.0000010759044,0.000080286256,0.000109708315,0.9925071,0.00009155818,0.00039971338,0.005529692],"study_design_scores_gemma":[0.00031736854,0.0006726267,0.004114515,0.000093212075,0.00014170216,0.000007163868,0.000041431056,0.0019169013,0.9871546,0.0002483886,0.0050957203,0.00019637687],"about_ca_topic_score_codex":0.000004469795,"about_ca_topic_score_gemma":0.000012445833,"teacher_disagreement_score":0.006871736,"about_ca_system_score_codex":0.000016874805,"about_ca_system_score_gemma":0.00008982324,"threshold_uncertainty_score":0.6789679},"labels":[],"label_agreement":null},{"id":"W4400040614","doi":"10.1016/j.molcel.2024.06.003","title":"A cell-free transcription-translation pipeline for recreating methylation patterns boosts DNA transformation in bacteria","year":2024,"lang":"en","type":"article","venue":"Molecular Cell","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Division of Chemical, Bioengineering, Environmental, and Transport Systems; Novo Nordisk Fonden; Deutsche Forschungsgemeinschaft; Novo Nordisk; Camille and Henry Dreyfus Foundation; National Science Foundation","keywords":"Biology; Methyltransferase; DNA methylation; DNA; Genetics; Transformation (genetics); Methylation; Computational biology; Gene; Gene expression","score_opus":0.010741117364658416,"score_gpt":0.23638754414190452,"score_spread":0.2256464267772461,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400040614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.73050976,0.0014409876,0.26577982,0.0006113895,0.00029090766,0.0005648585,0.00012067269,0.0000372166,0.00064437377],"genre_scores_gemma":[0.99258965,0.00025754326,0.004926096,0.00008203808,0.00012728103,0.000086131484,0.0017475421,0.000043539483,0.00014017223],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988208,0.000062439714,0.00036328108,0.0004006238,0.00009882677,0.00025404347],"domain_scores_gemma":[0.9995579,0.000012331341,0.000048672136,0.00029071383,0.000046899433,0.000043448155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025154534,0.00019163615,0.00014639064,0.00013843138,0.000041348092,0.00006901603,0.00016645595,0.0003567633,0.00001927786],"category_scores_gemma":[0.000014733158,0.00020015979,0.00013678099,0.0001456894,0.000020602769,0.0000116533065,0.000019531644,0.0001063684,0.000004564318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007230239,0.000043585806,0.000017035249,0.0002074859,0.000010351705,0.000008322463,0.0001664522,0.00009511247,0.9824226,0.00005720343,0.00009189021,0.016807683],"study_design_scores_gemma":[0.0009744309,0.00018150866,0.00007776263,0.000044467928,0.00003752409,0.0000073494616,0.00004145711,0.0041291756,0.9642068,0.00028627118,0.029783655,0.00022958648],"about_ca_topic_score_codex":0.000025563342,"about_ca_topic_score_gemma":0.00008271902,"teacher_disagreement_score":0.2620799,"about_ca_system_score_codex":0.000022289889,"about_ca_system_score_gemma":0.000045294248,"threshold_uncertainty_score":0.8162279},"labels":[],"label_agreement":null},{"id":"W4400570145","doi":"10.1101/2024.07.10.602937","title":"Evolutionary and functional divergence of Sfx, a plasmid-encoded H-NS homolog, underlies the regulation of IncX plasmid conjugation","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto; Universities Space Research Association; Ohio State University","keywords":"Plasmid; Biology; Bacterial conjugation; Psychological repression; Genetics; Functional divergence; DNA; Gene; Cell biology; Genome","score_opus":0.009962631288618897,"score_gpt":0.19837559114111125,"score_spread":0.18841295985249235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400570145","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946141,0.002853906,0.00046858183,0.00040403547,0.00085713004,0.00034516226,0.00041521076,0.000033863187,0.000007992668],"genre_scores_gemma":[0.99763435,0.0009232187,0.0010981071,0.000034724108,0.00021075351,0.00004912061,0.0000071822255,0.000032500073,0.000010030774],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851465,0.000084309686,0.0004363793,0.0005671046,0.00020266762,0.00019489099],"domain_scores_gemma":[0.9986233,0.000030633717,0.00036638379,0.0005742884,0.00035491763,0.000050459174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025356066,0.00026965278,0.00028137458,0.00012947778,0.00009221587,0.000027950107,0.00024442075,0.00072942785,0.000018135937],"category_scores_gemma":[0.00011253118,0.0002343521,0.00009903419,0.00019572882,0.00053404854,0.000004820976,0.0009039658,0.0003011291,0.000003565983],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008887465,0.000047066424,0.0020994814,0.0002390675,0.00016813938,8.712211e-7,0.00000565536,0.00023595775,0.99441546,0.002218872,0.00047661708,0.000003942993],"study_design_scores_gemma":[0.00022931398,0.00016099577,0.11626322,0.00012393198,0.000106694795,1.2891446e-7,0.000006526033,0.0006301252,0.8803592,0.0001615099,0.0017064449,0.00025193975],"about_ca_topic_score_codex":0.000028445853,"about_ca_topic_score_gemma":0.000006865473,"teacher_disagreement_score":0.11416374,"about_ca_system_score_codex":0.000037308495,"about_ca_system_score_gemma":0.00039493188,"threshold_uncertainty_score":0.9556601},"labels":[],"label_agreement":null},{"id":"W4401181399","doi":"10.1101/2024.07.30.605496","title":"Bacteria combine polar- and dispersed-growth to power cell elongation and wall width dynamics","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"MreB; Peptidoglycan; Bacteria; Cell wall; Bacterial cell structure; FtsZ; Bacterial growth; Cell division; Cell growth; Actinobacteria; Biology; Cell biology; Streptomyces; Chemistry; Biophysics; Microbiology; Cell; Cytoskeleton; Biochemistry; Genetics","score_opus":0.003755353612590093,"score_gpt":0.1870885039885804,"score_spread":0.1833331503759903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401181399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951585,0.0015111209,0.00020793977,0.0010563573,0.0008667025,0.00051535893,0.0005817086,0.000088519126,0.000013808988],"genre_scores_gemma":[0.99504876,0.0009972813,0.0032175046,0.00033131707,0.00021244421,0.000047491867,0.0000097411585,0.000115010145,0.000020444095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979593,0.00005718294,0.00034265913,0.0011030312,0.00013039875,0.0004074385],"domain_scores_gemma":[0.99867105,0.0000077195655,0.00014390881,0.0007122924,0.00020764199,0.00025736188],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022616147,0.0004938445,0.00037536005,0.00017052786,0.0000864959,0.00023469422,0.0002915172,0.0010015169,0.00000881852],"category_scores_gemma":[0.00005644367,0.0005096768,0.00007356858,0.00017435379,0.00014559286,0.00000463138,0.0014512549,0.00044671114,0.000013809843],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051205636,0.000056056266,0.002260406,0.00023698299,0.0000818634,0.000010612358,0.0000063851635,8.7669844e-7,0.99651927,0.0005174575,0.00025132362,0.000007547424],"study_design_scores_gemma":[0.00054055365,0.0005425606,0.056165636,0.00016085524,0.00013374812,1.7380418e-7,0.000004769875,0.000192139,0.9326822,0.000028170172,0.008558051,0.0009911144],"about_ca_topic_score_codex":0.000083824714,"about_ca_topic_score_gemma":0.0000332958,"teacher_disagreement_score":0.06383705,"about_ca_system_score_codex":0.00006534888,"about_ca_system_score_gemma":0.0001675859,"threshold_uncertainty_score":0.9997355},"labels":[],"label_agreement":null},{"id":"W4402267440","doi":"10.1128/jb.00307-24","title":"Overexpression of diglucosyldiacylglycerol synthase leads to daptomycin resistance in <i>Bacillus subtilis</i>","year":2024,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Ichiro Kanehara Foundation for the Promotion of Medical Sciences and Medical Care; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Ryobi Teien Memory Foundation; Japan Agency for Medical Research and Development; Takeda Science Foundation","keywords":"Daptomycin; Lipopeptide; Bacillus subtilis; Microbiology; Biology; Bacteria; Phosphatidylglycerol; Surfactin; Cardiolipin; Mutant; Minimum inhibitory concentration; Phospholipid; Antibiotics; Staphylococcus aureus; Biochemistry; Gene; Membrane; Vancomycin; Genetics","score_opus":0.007639197121056878,"score_gpt":0.24422376435612594,"score_spread":0.23658456723506907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402267440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99481654,0.0032584548,0.00019304345,0.0006993318,0.00066722283,0.00010829382,0.000044700617,0.00000580137,0.00020660029],"genre_scores_gemma":[0.99745995,0.00061202655,0.001293857,0.00013846101,0.00030072476,0.000004334096,0.000013325906,0.000021392205,0.00015595678],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859875,0.00010962721,0.0006607821,0.00027160332,0.00010277975,0.00025642978],"domain_scores_gemma":[0.9992682,0.000037351012,0.00020765357,0.00028068534,0.000112411944,0.00009370663],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035669596,0.00016811318,0.00039383193,0.00024893126,0.000017130913,0.00001898001,0.0003218435,0.00036996222,0.000038296257],"category_scores_gemma":[0.00016811093,0.00013822671,0.00014129467,0.00020086225,0.00010756989,0.000008084468,0.00015535364,0.00023988272,0.00000595169],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008677455,0.000059033562,0.0009739935,0.00005819254,0.000034343655,0.000039251903,0.000052500538,0.000012692376,0.99420977,0.00011716986,0.0011649133,0.0024103925],"study_design_scores_gemma":[0.0005500565,0.001183142,0.0064482526,0.00029962359,0.000017116567,0.000115480805,0.000022955932,0.0000059637364,0.8831809,0.0001622711,0.10784971,0.00016448776],"about_ca_topic_score_codex":0.0000072679736,"about_ca_topic_score_gemma":0.0000640502,"teacher_disagreement_score":0.111028835,"about_ca_system_score_codex":0.000029855737,"about_ca_system_score_gemma":0.00015000554,"threshold_uncertainty_score":0.5636721},"labels":[],"label_agreement":null},{"id":"W4402576530","doi":"10.1002/jobm.202400253","title":"An Additional L451G452N453 in the RpoB Protein Suppressed the Synthetic Lethality in <i>Escherichia coli</i> at 37 Degrees Caused by Depletion of DnaK/J and Trigger Factor","year":2024,"lang":"en","type":"article","venue":"Journal of Basic Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Natural Science Foundation of China","keywords":"rpoB; Escherichia coli; RNA polymerase; Biology; Gene; Transcription factor; Biochemistry; Genetics; Molecular biology; 16S ribosomal RNA","score_opus":0.008436399752584384,"score_gpt":0.22430993173869815,"score_spread":0.21587353198611375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402576530","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99476945,0.0020740167,0.00003384978,0.0019975905,0.00012800533,0.0002504338,0.0007318296,0.0000026447726,0.000012172677],"genre_scores_gemma":[0.99908376,0.00029441013,0.000083734696,0.00020364697,0.00009800199,0.00001553303,0.00017571753,0.00001169288,0.000033525837],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986262,0.00043917107,0.000451734,0.00022519298,0.000060287843,0.0001974593],"domain_scores_gemma":[0.9994228,0.000087805485,0.00019276018,0.00021020538,0.00005731335,0.000029150504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005382829,0.0001465484,0.0002436876,0.00006534583,0.00003772575,0.000021761285,0.00030075706,0.00033210122,0.0001421563],"category_scores_gemma":[0.00007223607,0.000085930944,0.0000792733,0.00012347946,0.00030928443,0.000006415566,0.00006497907,0.0002937146,0.0000011674337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015583531,0.000098412675,0.00039487952,0.00002651729,0.000037613067,0.000009273534,0.000086884975,0.0000036990498,0.9954496,0.000030738094,0.003236523,0.00047000515],"study_design_scores_gemma":[0.0006850143,0.0008573209,0.009544772,0.00007173962,0.000021831172,0.00019382812,0.00009240848,0.000018414594,0.90069824,0.000091543116,0.08758442,0.0001404464],"about_ca_topic_score_codex":0.000021624428,"about_ca_topic_score_gemma":0.00027103466,"teacher_disagreement_score":0.09475136,"about_ca_system_score_codex":0.000025213241,"about_ca_system_score_gemma":0.000103197126,"threshold_uncertainty_score":0.3504162},"labels":[],"label_agreement":null},{"id":"W4402679392","doi":"10.1093/jambio/lxae246","title":"The plasmid-borne <i>hipBA</i> operon of <i>Klebsiella michiganensis</i> encodes a potent plasmid stabilization system","year":2024,"lang":"en","type":"article","venue":"Journal of Applied Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Trent University; Wellcome Trust; Nottingham Trent University","keywords":"Plasmid; Klebsiella oxytoca; Biology; Microbiology; Operon; Mobile genetic elements; Enterobacteriaceae; Klebsiella; Bacteria; Escherichia coli; Genetics; Gene","score_opus":0.0034814513301055844,"score_gpt":0.1911298537617741,"score_spread":0.18764840243166853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402679392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909712,0.0050854874,0.00077236997,0.0007873358,0.0014206378,0.00024275813,0.00008155253,0.000017120228,0.0006215518],"genre_scores_gemma":[0.9965603,0.0020135138,0.0008083527,0.00013294436,0.00034515353,0.0000056913295,0.00005087903,0.000029076955,0.000054131437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985502,0.00006686071,0.00073160115,0.00028568922,0.00007260618,0.00029308765],"domain_scores_gemma":[0.9990491,0.000058592577,0.00036707104,0.00029268293,0.00017610301,0.00005641131],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048040706,0.00021077921,0.0003483095,0.00009493155,0.00008664906,0.000040029394,0.00041489708,0.00045165655,0.000005228937],"category_scores_gemma":[0.000025192803,0.00013770342,0.00016950627,0.00014690917,0.0002972089,0.000003100428,0.00016211467,0.0002474426,0.000007991648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044249507,0.000039906372,0.0000090660205,0.00009043878,0.00019105103,0.000007224542,0.0000457516,0.0001635661,0.9912081,0.0018134023,0.0038279502,0.0021610789],"study_design_scores_gemma":[0.00037997676,0.00053072517,0.000014240576,0.000059652248,0.00006186643,0.00037863778,0.0002537005,0.000027051037,0.8266484,0.000071287715,0.17144912,0.00012530414],"about_ca_topic_score_codex":0.0000028918214,"about_ca_topic_score_gemma":0.000021540733,"teacher_disagreement_score":0.16762117,"about_ca_system_score_codex":0.000034391047,"about_ca_system_score_gemma":0.00019281317,"threshold_uncertainty_score":0.5615383},"labels":[],"label_agreement":null},{"id":"W4403087971","doi":"10.1139/cjm-2024-0116","title":"Mechanisms and implications of phenotypic switching in bacterial pathogens","year":2024,"lang":"en","type":"review","venue":"Canadian Journal of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Memorial University of Newfoundland","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Canada","keywords":"Biology; Phenotype; Phenotypic switching; Microbiology; Genetics; Gene","score_opus":0.01361505552514212,"score_gpt":0.24686621167943612,"score_spread":0.233251156154294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403087971","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.014418788,0.98399246,0.00006337893,0.00010478615,0.0007943073,0.00016473467,0.00043947535,0.0000012450289,0.000020853908],"genre_scores_gemma":[0.012064074,0.9867888,0.0006873923,0.000032908396,0.0002003722,0.0000044296194,0.00016490034,0.00003372459,0.000023390616],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99869037,0.00010375319,0.00068024726,0.0002490752,0.000013212918,0.00026335826],"domain_scores_gemma":[0.9991886,0.00001195035,0.00037836356,0.00021414498,0.00006802173,0.00013892344],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024800052,0.00022402935,0.0008073594,0.00042873734,0.000026506257,0.000016768741,0.00031767495,0.00082782935,0.00002029975],"category_scores_gemma":[0.00005107311,0.00018241246,0.00020316453,0.00013178695,0.000114799754,0.0000014451997,0.000075072836,0.00032411603,0.0000029595988],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007546275,0.0000086186765,0.00000608277,0.0007571317,0.00016296319,0.000023045555,0.000021548853,1.8246162e-7,0.78123534,0.0005023138,0.0003621861,0.21691306],"study_design_scores_gemma":[0.00016038027,0.00029710447,0.000018273555,0.0009826076,0.0003013233,0.0016495624,0.000011703118,6.4083665e-8,0.0018989893,0.00043461303,0.9940468,0.00019856887],"about_ca_topic_score_codex":0.00014645288,"about_ca_topic_score_gemma":0.007647512,"teacher_disagreement_score":0.99368465,"about_ca_system_score_codex":0.00004342247,"about_ca_system_score_gemma":0.0014373051,"threshold_uncertainty_score":0.74385643},"labels":[],"label_agreement":null},{"id":"W4403096544","doi":"10.1007/978-1-0716-4220-7_26","title":"Assembling DNA Plasmids with the Multi-Kingdom (MK) Cloning System","year":2024,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saint Mary's University","funders":"","keywords":"Plasmid; Cloning (programming); Kingdom; Genetics; Biology; DNA; Computational biology; Computer science; Paleontology; Programming language","score_opus":0.022792467370880344,"score_gpt":0.36014147235301286,"score_spread":0.3373490049821325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403096544","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.33112052,0.0024238573,0.6647751,0.0005232369,0.00057141535,0.0002467342,0.00000949889,0.00006846273,0.00026118814],"genre_scores_gemma":[0.57922536,0.00006824287,0.42003977,0.0002275876,0.00017184936,0.000077186196,0.000044473607,0.000054267774,0.00009127666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99767125,0.0007234496,0.00030981834,0.000734494,0.00007317381,0.00048782834],"domain_scores_gemma":[0.9991877,0.00008002835,0.00007405443,0.0005561035,0.000049869184,0.00005222149],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012558706,0.00028781642,0.00029280406,0.00016071388,0.000091959955,0.00007267033,0.0004684203,0.00060402224,0.000005597556],"category_scores_gemma":[0.000110267334,0.0001878962,0.00011583807,0.0003759485,0.00026734624,0.0000023419623,0.00029619382,0.00038528533,0.000006799681],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045069562,0.000018703638,0.00020431359,0.000044121618,0.00010468719,0.00005338041,0.000025764984,0.000099465666,0.9829576,0.005757549,0.00003002652,0.01065929],"study_design_scores_gemma":[0.00040266896,0.000385821,0.00008716654,0.00007173835,0.00003948542,0.00015433991,0.000115209165,0.0020226564,0.92131114,0.0001135892,0.0749952,0.00030099606],"about_ca_topic_score_codex":0.00003461412,"about_ca_topic_score_gemma":0.000051644412,"teacher_disagreement_score":0.24810484,"about_ca_system_score_codex":0.000036937337,"about_ca_system_score_gemma":0.00009867669,"threshold_uncertainty_score":0.7662185},"labels":[],"label_agreement":null},{"id":"W4403502362","doi":"10.1101/2024.10.15.618472","title":"The ATP-dependent protease ClpYQ degrades cell division proteins DivIVA and Mbl in <i>Bacillus subtilis</i>","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Bacillus subtilis; Cell biology; Protease; Cell division; Division (mathematics); Biology; Microbiology; Cell; Enzyme; Genetics; Biochemistry; Bacteria","score_opus":0.007279705147055203,"score_gpt":0.2004600893727099,"score_spread":0.1931803842256547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403502362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98462063,0.011529395,0.00012321337,0.0007966365,0.0008915817,0.0016892684,0.0002385717,0.00009877912,0.000011944893],"genre_scores_gemma":[0.9949792,0.0031035293,0.00078254676,0.000095580246,0.00036471215,0.0005120246,0.0000017528029,0.00012116482,0.00003949388],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970339,0.00015437946,0.0005402502,0.0013441069,0.00027293173,0.00065444584],"domain_scores_gemma":[0.9980483,0.000019946969,0.0002431852,0.0013347378,0.00016267668,0.00019115595],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006266101,0.00060448213,0.00040444251,0.00014711195,0.00019821695,0.00037940696,0.0006974673,0.0011950355,0.0000040495006],"category_scores_gemma":[0.0001347169,0.00048584957,0.0001381965,0.00023944324,0.00029714586,0.000004890974,0.0026839382,0.0009801019,0.000019085399],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006133315,0.00010749563,0.0014821428,0.00031634807,0.00005866676,0.000040208597,0.000006663517,0.000006727996,0.9976527,0.00010408007,0.00011265986,0.00005098285],"study_design_scores_gemma":[0.00046282826,0.00021620798,0.010241668,0.00020395445,0.000051844596,7.6590304e-8,0.0000051251195,0.000061632636,0.9615204,0.000021124855,0.026586056,0.0006291212],"about_ca_topic_score_codex":0.00007139388,"about_ca_topic_score_gemma":0.0000476186,"teacher_disagreement_score":0.03613233,"about_ca_system_score_codex":0.00007596602,"about_ca_system_score_gemma":0.0003860659,"threshold_uncertainty_score":0.9997593},"labels":[],"label_agreement":null},{"id":"W4403761604","doi":"10.3389/fmicb.2024.1493811","title":"Coordination of cell division and chromosome segregation by iron and a sRNA in Escherichia coli","year":2024,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Cell division; Mutant; Cell biology; Genetics; Transfer RNA; Cell; Gene; RNA","score_opus":0.002283402520742504,"score_gpt":0.18879072056182575,"score_spread":0.18650731804108325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403761604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902627,0.0085818395,0.00040956162,0.00020901622,0.00031276257,0.00014661376,0.00004473098,0.0000053772874,0.00002742006],"genre_scores_gemma":[0.99638766,0.0015375362,0.0017210481,0.000034389617,0.000016182437,0.00000689203,0.00017978346,0.00000976443,0.0001067483],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993214,0.000053332886,0.00017949122,0.000290917,0.0000142531335,0.00014060998],"domain_scores_gemma":[0.99983305,0.000006016612,0.000041823892,0.000088871595,0.000012872656,0.000017339296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012536976,0.00009987731,0.0001547927,0.00010978815,0.000013006309,0.000009896333,0.00006365858,0.00035055634,0.0000025042016],"category_scores_gemma":[0.000012504137,0.00009649181,0.000015524516,0.00010864069,0.00015578076,0.0000033840406,0.00008873344,0.00009707104,4.0423592e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029088547,0.000026746797,0.0059426194,0.00005742147,0.000006688557,0.0000012767779,0.000041799267,0.0000015816258,0.9884398,0.00002156668,0.0017922991,0.0036391332],"study_design_scores_gemma":[0.00057349016,0.0003649609,0.0028429776,0.000032493146,0.0000070303495,0.0000069305247,0.000058096382,0.00036144716,0.9824322,0.00021859891,0.012966462,0.00013535189],"about_ca_topic_score_codex":0.000028249327,"about_ca_topic_score_gemma":0.0000368694,"teacher_disagreement_score":0.011174164,"about_ca_system_score_codex":0.000015469801,"about_ca_system_score_gemma":0.000020593063,"threshold_uncertainty_score":0.39348218},"labels":[],"label_agreement":null},{"id":"W4404345944","doi":"10.1038/s41467-024-54214-0","title":"Diversification of molecular pattern recognition in bacterial NLR-like proteins","year":2024,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Azrieli Foundation; Israel Science Foundation; Deutsche Forschungsgemeinschaft","keywords":"Diversification (marketing strategy); Computational biology; Bacterial protein; Biology; Computer science; Evolutionary biology; Genetics; Bacteria; Business","score_opus":0.014409255071943298,"score_gpt":0.26137370944688254,"score_spread":0.24696445437493925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404345944","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99208957,0.0043466804,0.00048500358,0.0018271741,0.00032821696,0.00031188715,0.00013103252,0.000024755162,0.00045568674],"genre_scores_gemma":[0.9954626,0.000963316,0.0022030103,0.000079177495,0.00005325566,0.000042399493,0.0011630504,0.000013133829,0.000020048441],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937975,0.00007502403,0.00018403267,0.00019879176,0.000060456456,0.00010195258],"domain_scores_gemma":[0.9990674,0.000011384171,0.00004966422,0.00077468384,0.00007657309,0.000020239479],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012207168,0.000085638145,0.00008455342,0.000100386635,0.000032478052,0.000019915135,0.0004413127,0.00046629505,0.000015610269],"category_scores_gemma":[0.000042416774,0.00008703695,0.00005361197,0.0001958597,0.00009473046,0.0000040929426,0.0002514066,0.00029896523,0.000009590101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014530086,0.0000625361,0.00024142301,0.000018585179,0.00001812918,7.840108e-7,0.00002720763,7.5823147e-7,0.97335976,0.00019307126,0.00025060528,0.02581259],"study_design_scores_gemma":[0.00032637123,0.00017915767,0.005678324,0.00006774636,0.000031056516,0.000008387413,0.00004310039,0.00016014684,0.87457246,0.00034866278,0.11837682,0.00020778918],"about_ca_topic_score_codex":0.000028718528,"about_ca_topic_score_gemma":0.00030062298,"teacher_disagreement_score":0.11812622,"about_ca_system_score_codex":0.000014739088,"about_ca_system_score_gemma":0.000051386498,"threshold_uncertainty_score":0.35964945},"labels":[],"label_agreement":null},{"id":"W4404607487","doi":"10.1101/2024.11.20.624502","title":"Transcriptional landscape of the archaeal cell cycle is broadly conserved in eukaryotes","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke; Université de Montréal","funders":"","keywords":"Evolutionary biology; Biology; Archaea; Computational biology; Cell biology; Genetics; Gene","score_opus":0.007364417124422719,"score_gpt":0.19648507916417984,"score_spread":0.18912066203975714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404607487","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927796,0.0041406564,0.00001941745,0.00083016726,0.0011309955,0.0003755435,0.0006632283,0.000032283187,0.000028103717],"genre_scores_gemma":[0.99826956,0.00053697545,0.0005115089,0.00022231278,0.00032698095,0.000051355397,0.0000015748831,0.00006192985,0.000017776107],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982518,0.00008829902,0.00043423855,0.00071007747,0.00018014072,0.00033543364],"domain_scores_gemma":[0.9987176,0.000009802108,0.0001804622,0.0008792493,0.00014092054,0.00007195365],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023601133,0.0003377947,0.0003331212,0.00012549911,0.000042257954,0.00004463218,0.0006259374,0.0008861015,0.000029121275],"category_scores_gemma":[0.000031327043,0.00029069596,0.00022064256,0.00024752587,0.00022829526,0.0000018566004,0.0008412182,0.00059252547,0.000010834572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056568875,0.00009303327,0.0042041065,0.00028668577,0.00006671599,0.000005317357,0.000007714453,0.000024784626,0.9947159,0.00016125175,0.00037592975,0.0000019607382],"study_design_scores_gemma":[0.0003916914,0.00007452444,0.06777919,0.00014481948,0.000048348837,3.3059635e-8,0.000002369793,0.00008641068,0.9258494,0.000032561442,0.00527595,0.0003147068],"about_ca_topic_score_codex":0.00006927491,"about_ca_topic_score_gemma":0.000025438456,"teacher_disagreement_score":0.068866536,"about_ca_system_score_codex":0.000026004216,"about_ca_system_score_gemma":0.000510277,"threshold_uncertainty_score":0.9999545},"labels":[],"label_agreement":null},{"id":"W4404791504","doi":"10.1073/pnas.2408304121","title":"A widespread family of ribosomal peptide metallophores involved in bacterial adaptation to metal stress","year":2024,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bausch Health (Canada)","funders":"Muséum National d'Histoire Naturelle; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; European Synchrotron Radiation Facility; Agence Nationale de la Recherche","keywords":"Bacteria; Peptide; Signal peptide; Biochemistry; Chemistry; Peptide sequence; Gene; Biology; Genetics","score_opus":0.030786188292417114,"score_gpt":0.2824276440637464,"score_spread":0.25164145577132924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404791504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984554,0.00030772088,0.0000021287237,0.00067802327,0.0000617452,0.00014105444,0.00006411074,0.0000036373542,0.0002861843],"genre_scores_gemma":[0.99775374,0.000082466235,0.0019840908,0.000047554437,0.000081256934,0.000008708908,0.0000017013464,0.0000040715972,0.000036391935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990131,0.000007111005,0.0002922021,0.00023660458,0.00034060096,0.00011033634],"domain_scores_gemma":[0.999686,0.0000199131,0.00013370423,0.000010120263,0.00013043285,0.00001984649],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004873389,0.000081273494,0.00013326798,0.00016798584,0.00002678016,0.00001657693,0.00045193525,0.00013544806,0.0000036770132],"category_scores_gemma":[0.00021211054,0.000057429803,0.00006802675,0.0004781986,0.00035751823,0.000015961064,0.0001497211,0.00007239332,3.7755004e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004674187,0.000025196288,0.00053389603,0.00004062154,0.000022139568,7.5349815e-9,0.0000855014,0.00007536987,0.9956534,0.003052332,0.000085312044,0.00037951622],"study_design_scores_gemma":[0.00010024116,0.00016442116,0.019240666,0.000086343716,0.0000110747105,0.0000013181619,0.00015921622,0.00023618419,0.9769202,0.0024131043,0.0006045249,0.00006269169],"about_ca_topic_score_codex":0.000023348768,"about_ca_topic_score_gemma":0.0000034676607,"teacher_disagreement_score":0.018733153,"about_ca_system_score_codex":0.000009124218,"about_ca_system_score_gemma":0.000050036415,"threshold_uncertainty_score":0.23419194},"labels":[],"label_agreement":null},{"id":"W4404794241","doi":"10.1107/s205979832401132x","title":"The 1.3 Å resolution structure of the truncated group Ia type IV pilin from <i>Pseudomonas aeruginosa</i> strain P1","year":2024,"lang":"en","type":"article","venue":"Acta Crystallographica Section D Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Basic Energy Sciences; National Institute of General Medical Sciences; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; York University","keywords":"Pilin; Pseudomonas aeruginosa; Strain (injury); Pilus; Type (biology); Resolution (logic); Group (periodic table); Microbiology; Physics; Biology; Genetics; Computer science; Bacteria; Escherichia coli; Artificial intelligence; Anatomy; Gene","score_opus":0.005301910738841747,"score_gpt":0.22332924216621802,"score_spread":0.21802733142737626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404794241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99222565,0.0018595087,0.000055314238,0.0012425849,0.0036351432,0.0003138474,0.0005589543,0.00006322953,0.000045798635],"genre_scores_gemma":[0.99728084,0.00095825375,0.00017106418,0.00012244818,0.0006236272,0.000007149504,0.0007708682,0.000027463557,0.000038318776],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99821275,0.00026406397,0.00042119628,0.0005978683,0.00011996532,0.00038416628],"domain_scores_gemma":[0.9989652,0.00006192134,0.00017675043,0.0006289514,0.00011212576,0.000055070872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013681047,0.0002913353,0.00022858975,0.00010073198,0.00032914456,0.00006318916,0.0005734218,0.00084989716,0.00004519094],"category_scores_gemma":[0.00008949934,0.00016764963,0.0002210465,0.0006580014,0.00080963364,0.000007715979,0.0002545762,0.00045178173,2.823612e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020186478,0.0000067338137,0.0010081244,0.00001040672,0.00019794068,7.281299e-7,0.000023902445,0.000008475278,0.994518,0.0007826117,0.0005240913,0.0027171383],"study_design_scores_gemma":[0.0010301875,0.0018294372,0.07388729,0.00004995635,0.00020791314,0.0001810376,0.00019340796,0.00049052254,0.25306696,0.020658776,0.64759564,0.0008089008],"about_ca_topic_score_codex":0.0002587701,"about_ca_topic_score_gemma":0.0014701858,"teacher_disagreement_score":0.741451,"about_ca_system_score_codex":0.00002061899,"about_ca_system_score_gemma":0.00007984451,"threshold_uncertainty_score":0.6836553},"labels":[],"label_agreement":null},{"id":"W4405535379","doi":"10.1101/2024.12.16.628611","title":"Functional specialization of the subdomains of a bactofilin driving stalk morphogenesis in <i>Asticcacaulis biprosthecum</i>","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institutes of Health","keywords":"Biology; Morphogenesis; Mutant; Cell biology; Stalk; Phenotype; Regulator; Genetics; Gene","score_opus":0.0078002712699427705,"score_gpt":0.19421768831393307,"score_spread":0.1864174170439903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405535379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958685,0.0013816437,0.00040468454,0.00015562809,0.0012737213,0.00043679905,0.0004487793,0.00002393317,0.000006327091],"genre_scores_gemma":[0.998166,0.0005338407,0.00073438865,0.00003768623,0.00040077648,0.00004383436,0.000003120351,0.00007164794,0.0000086948985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981105,0.00010501219,0.00060684985,0.00065726665,0.00023988674,0.0002805139],"domain_scores_gemma":[0.9983458,0.00001532983,0.0003982374,0.00090445136,0.00027970833,0.000056510245],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032792555,0.00033182587,0.0003918865,0.00019763627,0.00003993882,0.00003213309,0.0004524108,0.0008370586,0.000026531521],"category_scores_gemma":[0.00018094781,0.00029320823,0.00020484041,0.0005174838,0.00023691112,0.0000028587713,0.0011440417,0.00034609486,0.000003722603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047441594,0.00009791054,0.008915779,0.00022938881,0.00009501191,0.000003095412,0.0000029907108,0.00018808464,0.98990905,0.0003327333,0.00017388668,0.0000046266537],"study_design_scores_gemma":[0.0002745575,0.000077825876,0.06909254,0.0002726759,0.00006964848,3.549561e-8,0.000002391664,0.00007222435,0.927789,0.000012007975,0.0020718279,0.00026530414],"about_ca_topic_score_codex":0.000049281436,"about_ca_topic_score_gemma":0.000054450284,"teacher_disagreement_score":0.06212009,"about_ca_system_score_codex":0.000059652357,"about_ca_system_score_gemma":0.0005735061,"threshold_uncertainty_score":0.999952},"labels":[],"label_agreement":null},{"id":"W4405548211","doi":"10.1242/jcs.263768","title":"First person – Safia Mahabub Sauty","year":2024,"lang":"en","type":"article","venue":"Journal of Cell Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biology; Evolutionary biology","score_opus":0.007245324557642798,"score_gpt":0.22625885214260485,"score_spread":0.21901352758496206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405548211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99271995,0.0021090116,0.00070204097,0.0011414151,0.0011729854,0.00003430674,0.0000029129446,0.0000055754913,0.002111806],"genre_scores_gemma":[0.9966097,0.00059045386,0.0017924876,0.000073540774,0.00035893783,3.524435e-7,5.5698837e-7,0.0000062048543,0.00056779524],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993009,0.000008856759,0.00015070403,0.00017265955,0.00018094962,0.00018591614],"domain_scores_gemma":[0.99960405,0.000005447606,0.00007238351,0.00014083745,0.00009497511,0.00008233098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004006344,0.000073566516,0.00008314823,0.000098817,0.000078456884,0.00009069783,0.00039222953,0.00009756077,0.000036989124],"category_scores_gemma":[0.00003726147,0.000054396874,0.000076166056,0.00023512555,0.0002512093,0.0000071817412,0.000073556585,0.000119975666,0.0000129136215],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015364642,0.00001579523,0.00004200266,0.000012577554,0.0000048205366,0.000014050509,0.000029487363,0.000012792964,0.9953987,0.000082434664,0.001729671,0.002642307],"study_design_scores_gemma":[0.000090687965,0.0005268456,0.0006215956,0.000021159123,0.000008776327,0.00014092612,0.00003929467,0.00012159011,0.8113491,0.00008016901,0.18692467,0.000075216],"about_ca_topic_score_codex":0.0000020563366,"about_ca_topic_score_gemma":0.0000060414327,"teacher_disagreement_score":0.185195,"about_ca_system_score_codex":0.000019132769,"about_ca_system_score_gemma":0.00022955122,"threshold_uncertainty_score":0.22182402},"labels":[],"label_agreement":null},{"id":"W4405830644","doi":"10.1016/j.chembiol.2024.12.001","title":"Discovery of a Pseudomonas aeruginosa-specific small molecule targeting outer membrane protein OprH-LPS interaction by a multiplexed screen","year":2024,"lang":"en","type":"article","venue":"Cell chemical biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Illinois at Urbana-Champaign; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Cystic Fibrosis Canada; Georgia Institute of Technology; Broad Institute; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Pseudomonas aeruginosa; Bacterial outer membrane; Microbiology; Small molecule; Chemistry; Cell biology; Bacteria; Membrane protein; Membrane; Biology; Biochemistry; Escherichia coli; Genetics; Gene","score_opus":0.009465150381917118,"score_gpt":0.22075477209122382,"score_spread":0.2112896217093067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405830644","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99385667,0.0030929754,0.0014076759,0.00030643315,0.00035449464,0.00033042187,0.00017730032,0.000049241175,0.00042480297],"genre_scores_gemma":[0.9951997,0.00035303962,0.0024309892,0.00008460116,0.00034918464,0.000050172242,0.0011630757,0.000041242914,0.00032798617],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982863,0.000074237854,0.00043998245,0.0007356345,0.000064272666,0.00039956503],"domain_scores_gemma":[0.9993794,0.000027895865,0.000115572024,0.00034708218,0.0000618359,0.000068208814],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013944927,0.0002843506,0.00031238358,0.00007193964,0.00003172201,0.00004268039,0.00034083615,0.0006971743,0.000031764244],"category_scores_gemma":[0.000049881415,0.00024661695,0.00018462443,0.00013714678,0.00027132992,0.000006381485,0.00031523558,0.00028636114,0.000019502828],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002057578,0.000112616035,0.000039859216,0.000080946666,0.000058635036,0.0000058904757,0.000016894068,8.709154e-7,0.9963569,0.0001327886,0.0015577606,0.0014311025],"study_design_scores_gemma":[0.00042615275,0.00029337255,0.0000032945911,0.000035218363,0.000016786544,0.0000137061015,0.000027499102,0.000055721335,0.9582437,0.00007306799,0.040535703,0.00027577582],"about_ca_topic_score_codex":0.000043633,"about_ca_topic_score_gemma":0.000004066527,"teacher_disagreement_score":0.038977943,"about_ca_system_score_codex":0.000022978533,"about_ca_system_score_gemma":0.00004388958,"threshold_uncertainty_score":0.9999986},"labels":[],"label_agreement":null},{"id":"W4406154259","doi":"10.1128/jb.00285-24","title":"Recent progress in proteins regulating the germination of <i>Bacillus subtilis</i> spores","year":2025,"lang":"en","type":"review","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"China Agricultural University; Ministry of Agriculture and Rural Affairs of the People's Republic of China; National Natural Science Foundation of China","keywords":"Spore; Germination; Bacillus subtilis; Biology; Spore germination; Endospore; Cell biology; Microbiology; Dormancy; Botany; Genetics; Bacteria","score_opus":0.015796844681482503,"score_gpt":0.2886264413918656,"score_spread":0.2728295967103831,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406154259","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.029809993,0.96870404,0.0000100176985,0.00023997143,0.0005918482,0.0005435368,0.000030356932,0.0000024655355,0.00006778458],"genre_scores_gemma":[0.0033663567,0.99566877,0.00040204887,0.000027094175,0.0003281995,0.000028960312,0.000072425246,0.000020154543,0.000085971595],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976875,0.00038655076,0.0013198415,0.00025726465,0.00010611449,0.00024273104],"domain_scores_gemma":[0.9974631,0.00005385247,0.0017885551,0.00039225083,0.00026902935,0.000033202876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00072885863,0.0002756989,0.0012030586,0.00026420478,0.000032310698,0.000014540569,0.0005987465,0.0008982406,0.000012436446],"category_scores_gemma":[0.00025158733,0.00017275002,0.00033358892,0.00028405967,0.00028757978,0.0000034178706,0.00025210847,0.0004414555,6.368182e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000846671,0.00007005379,0.00008398589,0.0016969144,0.00011570262,0.000009405662,0.000013862186,8.235386e-7,0.0070192,0.000035755576,0.00011437593,0.99075526],"study_design_scores_gemma":[0.00030683284,0.00067629275,0.00040684297,0.002808579,0.00015601936,0.00026796747,0.000012696453,7.8223354e-7,0.0032255508,0.0000423251,0.99192905,0.00016706315],"about_ca_topic_score_codex":0.0000020665009,"about_ca_topic_score_gemma":0.000020702566,"teacher_disagreement_score":0.9918147,"about_ca_system_score_codex":0.00004116582,"about_ca_system_score_gemma":0.0006104339,"threshold_uncertainty_score":0.7044541},"labels":[],"label_agreement":null},{"id":"W4406889542","doi":"10.1021/acs.biochem.4c00580","title":"Carboxy-Amidated AamAP1-Lys has Superior Conformational Flexibility and Accelerated Killing of Gram-Negative Bacteria","year":2025,"lang":"en","type":"article","venue":"Biochemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council","keywords":"Gram-negative bacteria; Chemistry; Bacteria; Gram; Gram-negative bacterial infections; Microbiology; Biochemistry; Stereochemistry; Biology; Antibiotics; Escherichia coli; Genetics","score_opus":0.01681546287748263,"score_gpt":0.2561453716996961,"score_spread":0.23932990882221344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406889542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982494,0.0003708327,0.00011121809,0.0002496596,0.00014020766,0.00015464114,0.00017875024,0.00002183369,0.00052342797],"genre_scores_gemma":[0.9978965,0.00014580927,0.0009687955,0.0000986616,0.00006454859,0.000012912127,0.00050980697,0.0000099544195,0.00029300453],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998951,0.000025972757,0.0003584223,0.00037788047,0.000077596036,0.00020910842],"domain_scores_gemma":[0.9992418,0.000014683573,0.00011589577,0.00035549517,0.00021330542,0.000058772188],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012398977,0.0001954138,0.0002291048,0.000042163145,0.0000875364,0.00004607767,0.00020099811,0.00047266425,0.00004103599],"category_scores_gemma":[0.00012885309,0.00019110707,0.00006188552,0.00015662675,0.00042363995,0.000004229973,0.00021421384,0.00011328013,0.0000011777363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014376071,0.00004677176,0.0012579676,0.0000936154,0.00008487107,5.7510493e-7,0.000019058758,0.0000018013535,0.9969135,0.000046376354,0.00018286212,0.001208868],"study_design_scores_gemma":[0.0006360783,0.000078524776,0.0034993067,0.000032289092,0.000024038236,0.0000064979204,0.000092798546,0.00014153533,0.99151397,0.00011132367,0.0036825447,0.00018109535],"about_ca_topic_score_codex":0.000035379086,"about_ca_topic_score_gemma":0.000008266174,"teacher_disagreement_score":0.0053995047,"about_ca_system_score_codex":0.000018314957,"about_ca_system_score_gemma":0.00022820855,"threshold_uncertainty_score":0.7793121},"labels":[],"label_agreement":null},{"id":"W4407132276","doi":"10.1038/s41598-025-85609-8","title":"Identification of a comprehensive set of transcriptional regulators involved in the long-term survivability of Escherichia coli in soil","year":2025,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Survivability; Term (time); Identification (biology); Escherichia coli; Computational biology; Set (abstract data type); Computer science; Biology; Gene; Genetics; Computer network; Ecology","score_opus":0.014493265330102372,"score_gpt":0.25910850056029106,"score_spread":0.2446152352301887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407132276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984784,0.0002655435,0.00006479855,0.00009880333,0.00077201636,0.00027563612,0.000014962061,0.0000018167763,0.000028000073],"genre_scores_gemma":[0.9997406,0.000019810626,0.00003720872,0.000007078613,0.000008168471,0.00001134664,0.00011363029,0.0000030215979,0.0000591313],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985345,0.00011103111,0.0007387291,0.00034714973,0.00015855019,0.00011004123],"domain_scores_gemma":[0.9987921,0.000012712354,0.0003328178,0.0006394923,0.00021130677,0.000011552839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001034096,0.00007845634,0.00019011741,0.00013203731,0.000022978938,0.00001133129,0.00019292925,0.00015668401,0.000004626274],"category_scores_gemma":[0.00006902432,0.000065415115,0.00007457846,0.00051746686,0.00052941975,0.0000031889713,0.000056994017,0.00006215758,8.229045e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000392606,0.00011519508,0.092488274,0.000095127994,0.000012569579,0.0000018217245,0.00009124941,0.000047345682,0.90679634,0.00010380124,0.000032784697,0.00017625272],"study_design_scores_gemma":[0.00011243504,0.00002461258,0.40705615,0.000019804833,0.0000058454516,0.0000012920865,0.0000958547,0.000012488073,0.59183335,0.0006731448,0.00013244875,0.00003257672],"about_ca_topic_score_codex":0.00006707956,"about_ca_topic_score_gemma":0.0007160766,"teacher_disagreement_score":0.31496295,"about_ca_system_score_codex":0.000009881663,"about_ca_system_score_gemma":0.00016587094,"threshold_uncertainty_score":0.2667551},"labels":[],"label_agreement":null},{"id":"W4407478520","doi":"10.1016/j.bpj.2024.11.798","title":"BPS2025 - Investigating cell-width homeostasis in bacteria through computational simulations and experiments","year":2025,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Bacteria; Homeostasis; Cell biology; Computational biology; Cell; Biology; Genetics","score_opus":0.014442850907444614,"score_gpt":0.28317933722132266,"score_spread":0.26873648631387803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407478520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977094,0.000163501,0.001193186,0.00053392287,0.00016928125,0.000072725925,0.000017649694,0.000005365945,0.0001349862],"genre_scores_gemma":[0.99080956,0.0000952273,0.008521877,0.00033419955,0.0001447095,0.0000028921759,0.000040519477,0.000007389474,0.000043645858],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992892,0.0000465714,0.00022334153,0.00020281423,0.00006913156,0.00016895172],"domain_scores_gemma":[0.99972177,0.000015208133,0.00007004555,0.00009840892,0.00004562362,0.000048944505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047594,0.00011367573,0.00012925621,0.000057268524,0.00010922745,0.00006329858,0.00011009295,0.00014321337,0.000010685762],"category_scores_gemma":[0.000029404691,0.00010642212,0.00004043579,0.00013902942,0.00011585187,0.0000062922045,0.00013248154,0.00014110033,0.0000016058539],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019324074,0.000079162724,0.0014117797,0.0000069973735,0.000020960138,0.0000017978463,0.000034951805,0.00024085715,0.995911,0.00031890642,0.00015955107,0.0017947246],"study_design_scores_gemma":[0.0012248876,0.00021708955,0.02545738,0.00004222356,0.000017115563,0.000013242541,0.00007604818,0.0011417905,0.9635624,0.003576098,0.0044573345,0.0002143805],"about_ca_topic_score_codex":0.000008068492,"about_ca_topic_score_gemma":0.0000033818208,"teacher_disagreement_score":0.03234858,"about_ca_system_score_codex":0.000015623227,"about_ca_system_score_gemma":0.000072024326,"threshold_uncertainty_score":0.4339768},"labels":[],"label_agreement":null},{"id":"W4407765430","doi":"10.1111/mmi.15347","title":"Future Directions of the Prokaryotic Chromosome Field","year":2025,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Universiteit Leiden","keywords":"Biology; Field (mathematics); Chromosome; Computational biology; Genetics; Evolutionary biology; Gene","score_opus":0.005228077019869244,"score_gpt":0.24124352431064827,"score_spread":0.23601544729077903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407765430","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00038891617,0.9963406,0.00004203016,0.00024442104,0.0016965154,0.00072083256,0.00020973425,0.000014577127,0.00034239303],"genre_scores_gemma":[0.00015124741,0.99780333,0.00017098509,0.00026138997,0.0002710823,0.000076357355,0.000381941,0.000033691427,0.0008499571],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983416,0.00026649816,0.00047774668,0.0005690572,0.00003499719,0.0003100986],"domain_scores_gemma":[0.9985439,0.000024829746,0.0003022284,0.0010258614,0.0000731445,0.000029996369],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00008661719,0.00038500794,0.0008761412,0.00012177649,0.00007506953,0.000009517603,0.00083681184,0.0016322137,0.000026295203],"category_scores_gemma":[0.00009855545,0.0002612408,0.0007525696,0.0003565691,0.00020153697,6.20353e-7,0.00068869937,0.00037307956,0.000007485167],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010976278,0.0000850615,0.000002462645,0.0039020798,0.000478359,0.000005111844,0.0000044461876,3.2066654e-7,0.5653091,0.00027426,0.0029005134,0.42702731],"study_design_scores_gemma":[0.00009917225,0.00016665533,7.3678314e-7,0.00101284,0.00032083254,0.000116237796,0.000001975118,3.5765012e-8,0.08191961,0.000017074191,0.91611934,0.00022547101],"about_ca_topic_score_codex":0.000005996533,"about_ca_topic_score_gemma":0.000016457161,"teacher_disagreement_score":0.91321886,"about_ca_system_score_codex":0.00001888236,"about_ca_system_score_gemma":0.00036642383,"threshold_uncertainty_score":0.99998397},"labels":[],"label_agreement":null},{"id":"W4408246949","doi":"10.1038/s41467-025-57453-x","title":"Salmonella exploits LRRK2-dependent plasma membrane dynamics to invade host cells","year":2025,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto; University Health Network; SickKids Foundation; University of Saskatchewan; Hospital for Sick Children","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Natural Sciences and Engineering Research Council of Canada; Leona M. and Harry B. Helmsley Charitable Trust; Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Host (biology); Salmonella; Dynamics (music); Exploit; Biology; Microbiology; Bacteria; Computer science; Genetics; Physics; Computer security","score_opus":0.008685474531597384,"score_gpt":0.261756805458648,"score_spread":0.2530713309270506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408246949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95911205,0.0035740002,0.00063069974,0.02121184,0.001061766,0.0006917883,0.0002540756,0.00008536689,0.013378396],"genre_scores_gemma":[0.9884137,0.002525807,0.0052131237,0.0014301178,0.000059092377,0.00005504519,0.00035189814,0.00002066387,0.0019305672],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999045,0.00007414457,0.00023132144,0.0003300396,0.00008735647,0.00023214503],"domain_scores_gemma":[0.99762976,0.000032619148,0.00006294656,0.0020612262,0.00013811869,0.00007534941],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012645847,0.00017132284,0.00015877589,0.00012241404,0.000185825,0.00004244297,0.0014874858,0.0008183424,0.000009700392],"category_scores_gemma":[0.00010214944,0.00017464023,0.00007012165,0.00030289256,0.00010813436,0.0000023795326,0.0012614129,0.00051246583,0.00003337376],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003274785,0.00010458043,0.00019272046,0.000008019039,0.00005344709,5.601045e-7,0.000016169324,0.000018485787,0.9890546,0.004431501,0.004576055,0.0015110939],"study_design_scores_gemma":[0.0002675493,0.000079292106,0.00064548996,0.00001702818,0.000022045291,0.000004036812,0.00007223392,0.00013528661,0.7268015,0.00006267858,0.27171066,0.00018214688],"about_ca_topic_score_codex":0.000017057979,"about_ca_topic_score_gemma":0.0014747657,"teacher_disagreement_score":0.2671346,"about_ca_system_score_codex":0.000041129773,"about_ca_system_score_gemma":0.0000936594,"threshold_uncertainty_score":0.7121622},"labels":[],"label_agreement":null},{"id":"W4408319113","doi":"10.1016/j.jbc.2025.108395","title":"YibN, a bona fide interactor of the bacterial YidC insertase with effects on membrane protein insertion and membrane lipid production","year":2025,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina; University of British Columbia","funders":"Canadian Institutes of Health Research; Foundation for Promotion of Material Science and Technology of Japan; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research - Antimicrobial Resistance Research Initiative; University of British Columbia; Japan Society for the Promotion of Science; Canada Research Chairs","keywords":"Interactor; Membrane; Membrane protein; Chemistry; Membrane integrity; Cell biology; Biophysics; Biology; Biochemistry","score_opus":0.005392505626528626,"score_gpt":0.20952360812893714,"score_spread":0.2041311025024085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408319113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981661,0.00014606104,0.000010256927,0.001123518,0.0002599808,0.0002052082,0.00000801016,0.0000045795564,0.00007630295],"genre_scores_gemma":[0.99898046,0.0001596565,0.00019082593,0.00011323862,0.00039965918,0.000008776926,0.0000135513565,0.0000067244155,0.00012711032],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999123,0.00007230823,0.0003381298,0.0002322385,0.000095568364,0.00013879994],"domain_scores_gemma":[0.9992339,0.000022730137,0.00033627608,0.0002325055,0.00012856633,0.000046036454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017836253,0.00016359723,0.00025606027,0.000028369406,0.00004600799,0.000015398518,0.00021465153,0.00034867553,0.000011796599],"category_scores_gemma":[0.00045344554,0.00008821175,0.000090997484,0.0001138468,0.00017824954,0.000004210403,0.00011200703,0.00025189758,2.1460268e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022586454,0.00012965193,0.0005700974,0.00014276513,0.00006494213,0.0000028459592,0.000006684698,0.0000026153402,0.9943918,0.0000053333724,0.00007012483,0.002354515],"study_design_scores_gemma":[0.00077478244,0.0010406481,0.003726733,0.00025620128,0.000028958662,0.00006540522,0.000016832559,0.0000014628511,0.99023074,0.000030068728,0.0037271604,0.00010099322],"about_ca_topic_score_codex":0.000002610002,"about_ca_topic_score_gemma":0.000002900107,"teacher_disagreement_score":0.0041610254,"about_ca_system_score_codex":0.000016171569,"about_ca_system_score_gemma":0.00007959435,"threshold_uncertainty_score":0.35971707},"labels":[],"label_agreement":null},{"id":"W4409087013","doi":"10.1007/s00203-025-04290-7","title":"Cra-controlled antisense RNA-downregulation of isocitrate dehydrogenase in Escherichia coli","year":2025,"lang":"en","type":"article","venue":"Archives of Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Advanced Micro Devices (Canada)","funders":"","keywords":"Catabolite repression; Escherichia coli; Repressor; Biology; Biochemistry; Isocitrate dehydrogenase; Molecular biology; Gene expression; Dehydrogenase; Activator (genetics); Gene; Downregulation and upregulation; Fructose; PEP group translocation; Enzyme; Mutant","score_opus":0.0036810721812705143,"score_gpt":0.2137124765917639,"score_spread":0.2100314044104934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409087013","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99719894,0.0009098399,0.0003217013,0.00025402618,0.00009902059,0.00028610477,0.00005156741,0.0000053658764,0.00087343226],"genre_scores_gemma":[0.99734324,0.00045217844,0.0017328835,0.00009834228,0.000021379687,0.000010593484,0.00011362221,0.000008330784,0.00021941298],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892473,0.00013990657,0.0004366473,0.00027278942,0.00001619867,0.00020972884],"domain_scores_gemma":[0.9994435,0.000043653257,0.00018689844,0.0002740549,0.000032481257,0.000019459547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011529564,0.0001376408,0.00039442774,0.0001614009,0.000020839885,0.0000025722618,0.00020475023,0.00025264217,0.000008384365],"category_scores_gemma":[0.0000645489,0.00012717767,0.00013307661,0.00012618667,0.000372723,0.0000011964407,0.00013392484,0.00008392349,9.123049e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010194198,0.00011264209,0.0011490379,0.000031069583,0.00010817105,0.0000012574532,0.000029341667,0.000061217215,0.9955262,0.0005381773,0.000064727516,0.0013587184],"study_design_scores_gemma":[0.0029880602,0.00027317269,0.007826551,0.000027312191,0.000022315426,0.0000034620912,0.00002246708,0.000082781226,0.98662674,0.0005751266,0.0014480602,0.000103966464],"about_ca_topic_score_codex":0.000032368527,"about_ca_topic_score_gemma":0.0001071344,"teacher_disagreement_score":0.008899495,"about_ca_system_score_codex":0.0000036911892,"about_ca_system_score_gemma":0.0000930831,"threshold_uncertainty_score":0.5186155},"labels":[],"label_agreement":null},{"id":"W4409157261","doi":"10.1126/sciadv.adq9845","title":"Structural architecture of TolQ-TolR inner membrane protein complex from opportunistic pathogen <i>Acinetobacter baumannii</i>","year":2025,"lang":"en","type":"article","venue":"Science Advances","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Pentamer; Cell envelope; Biology; Acinetobacter baumannii; Transmembrane protein; Bacterial outer membrane; Biophysics; Bacteria; Genetics; Escherichia coli; Pseudomonas aeruginosa; Biochemistry; Gene","score_opus":0.010499688702470821,"score_gpt":0.25640983734919476,"score_spread":0.24591014864672395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409157261","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966723,0.00059860724,0.0006092604,0.00050162966,0.00029000346,0.0002446745,0.00021344866,0.000015493662,0.0008546343],"genre_scores_gemma":[0.9932463,0.000042544005,0.0058595543,0.0002715631,0.00008913673,0.000013107012,0.000148591,0.0000074180716,0.00032175373],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871516,0.000028372162,0.00026095132,0.000520097,0.0001719899,0.00030341098],"domain_scores_gemma":[0.99920464,0.000008344435,0.00012738653,0.00046693615,0.00012841096,0.00006426689],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013379642,0.00016955992,0.00021116177,0.00010004464,0.00013001137,0.000033465778,0.0006873717,0.00012773369,0.000049612085],"category_scores_gemma":[0.0000801415,0.00013338304,0.0000538098,0.0003087659,0.0009739219,0.000010590197,0.00031948005,0.0000973554,0.0000022726163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005631158,0.000013572604,0.00043233312,0.000019583675,0.000011313086,0.0000014837246,0.0000134246,0.000028747632,0.9762633,0.00028722864,0.000029746823,0.022842998],"study_design_scores_gemma":[0.00027252722,0.00016713221,0.003752237,0.000027171172,0.000011564866,0.0000033523165,0.00004312402,0.000032253796,0.9475535,0.001684219,0.046286814,0.00016609686],"about_ca_topic_score_codex":0.000027342996,"about_ca_topic_score_gemma":0.0000767999,"teacher_disagreement_score":0.046257067,"about_ca_system_score_codex":0.000009897879,"about_ca_system_score_gemma":0.00018699895,"threshold_uncertainty_score":0.5439203},"labels":[],"label_agreement":null},{"id":"W4409162398","doi":"10.1128/jb.00078-25","title":"<i>Bacillus subtilis</i> MurJ and Amj Lipid II flippases are not essential for growth","year":2025,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Columbia College","funders":"National Institute of General Medical Sciences","keywords":"Lipid II; Flippase; Biology; Bacillus subtilis; Peptidoglycan; Biochemistry; Transmembrane protein; Membrane protein; Cell envelope; Cytoplasm; Lipid bilayer; Cell biology; Enzyme; Gene; Genetics; Membrane; Bacteria; Escherichia coli; Phospholipid; Phosphatidylserine","score_opus":0.006547138450259125,"score_gpt":0.23081825085879976,"score_spread":0.22427111240854064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409162398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938194,0.0007225749,0.00085700647,0.0029258623,0.0013907966,0.00014837435,0.000063502855,0.0000064074025,0.0000660797],"genre_scores_gemma":[0.995269,0.001342508,0.0012037416,0.00097112515,0.00086671533,0.000008516457,0.000029085724,0.000014967388,0.0002943506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988719,0.000063315136,0.0004756178,0.0002687422,0.000052809202,0.0002675698],"domain_scores_gemma":[0.99902153,0.000034573866,0.00037751556,0.00019643352,0.00029773748,0.000072197756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023364117,0.00018517477,0.00040991313,0.00013564523,0.00012337619,0.00002577068,0.00025909074,0.00046183667,0.000012477001],"category_scores_gemma":[0.00025516574,0.0001566752,0.00016098908,0.00007548332,0.00023496881,0.000005614253,0.00025316302,0.00016033014,6.2165356e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008413759,0.000074449694,0.0011092508,0.00004305181,0.0001407943,0.0000054428933,0.000012454306,0.0000010058623,0.9910828,0.00027995542,0.002873679,0.0035357804],"study_design_scores_gemma":[0.0017624939,0.0019477251,0.010660956,0.000039509225,0.00009410126,0.0002272793,0.000049493297,0.000009478773,0.7833022,0.00035382257,0.20135558,0.0001973906],"about_ca_topic_score_codex":0.00000573745,"about_ca_topic_score_gemma":0.000024263858,"teacher_disagreement_score":0.20778058,"about_ca_system_score_codex":0.00001234325,"about_ca_system_score_gemma":0.00011849708,"threshold_uncertainty_score":0.6389029},"labels":[],"label_agreement":null},{"id":"W4409712850","doi":"10.1038/s41467-025-59009-5","title":"Conformational changes in the motor ATPase CpaF facilitate a rotary mechanism of Tad pilus assembly","year":2025,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Université de Montréal; Hospital for Sick Children; McMaster University; University of Toronto","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Hospital for Sick Children; Canada Foundation for Innovation; Canada Research Chairs; Government of Canada","keywords":"Pilus; Caulobacter crescentus; Pilin; Random hexamer; ATPase; ATP hydrolysis; Protein filament; Biophysics; Cell biology; Biology; Crystallography; Chemistry; Biochemistry; Bacteria; Bacterial protein; Genetics; Escherichia coli; Enzyme","score_opus":0.014876243008632517,"score_gpt":0.27339605575105336,"score_spread":0.25851981274242086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409712850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9520089,0.0076035857,0.00048715738,0.032776464,0.0002756276,0.00077312713,0.0004197578,0.000020989823,0.0056344136],"genre_scores_gemma":[0.99562246,0.001158212,0.0015930734,0.0011033147,0.000018984541,0.0000720875,0.0003026071,0.00000382016,0.00012546056],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994302,0.00010354341,0.00017476005,0.0001128265,0.00006956796,0.00010910418],"domain_scores_gemma":[0.99876165,0.000045132958,0.00006946858,0.0010068382,0.00010418507,0.000012720969],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023966806,0.000084843545,0.00009782665,0.00008541795,0.0000836333,0.0000116112005,0.0009319826,0.00036818406,0.0000040794353],"category_scores_gemma":[0.00010526755,0.000066679175,0.00004410403,0.0001867615,0.0001164771,0.0000023887437,0.00033871978,0.0003192947,0.0000018245388],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003907291,0.00011493233,0.00016331433,0.000017079821,0.000040967396,2.612137e-7,0.00012601369,0.0000023131154,0.9162846,0.07997584,0.001387265,0.0018483144],"study_design_scores_gemma":[0.0012017954,0.00043106815,0.01694164,0.000061222156,0.00005272697,0.00001315109,0.0007801615,0.0006243392,0.43519035,0.005353376,0.5390351,0.00031509274],"about_ca_topic_score_codex":0.000028585559,"about_ca_topic_score_gemma":0.001209557,"teacher_disagreement_score":0.5376478,"about_ca_system_score_codex":0.000008934424,"about_ca_system_score_gemma":0.000064111955,"threshold_uncertainty_score":0.28397727},"labels":[],"label_agreement":null},{"id":"W4409826757","doi":"10.1101/2025.04.24.650125","title":"Harnessing Coding Sequence Cleavage: Theophylline Aptazymes as Portable Gene Regulators in Bacteria","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Theophylline; Bacteria; Coding region; Cleavage (geology); Gene; Coding (social sciences); Chemistry; Computational biology; Biology; Genetics; Pharmacology; Mathematics","score_opus":0.011370158604115936,"score_gpt":0.2314311949666054,"score_spread":0.22006103636248947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409826757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949459,0.0016600892,0.0003519712,0.00026688707,0.0015700869,0.00056738727,0.0004801313,0.0001277265,0.000029832978],"genre_scores_gemma":[0.99111927,0.0015744496,0.006147143,0.00029740547,0.00058129395,0.00010383466,0.000012557203,0.000097965145,0.00006605985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99660647,0.00015574635,0.000756279,0.0015042075,0.0002192217,0.0007580766],"domain_scores_gemma":[0.9974505,0.000016684293,0.00045557346,0.0016513326,0.00025097645,0.00017495934],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00058045314,0.00069423276,0.0006909595,0.00033425773,0.00014759687,0.00022122345,0.0009001358,0.0016665659,0.000029466442],"category_scores_gemma":[0.00021392535,0.00076344854,0.00018082064,0.0004813672,0.00023284619,0.000012209918,0.0012531199,0.0007148181,0.000013924406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007993096,0.00008760071,0.0026297658,0.00019170447,0.000101258796,0.000046648584,0.0000033197919,0.000042698648,0.9961459,0.0004962959,0.00015708445,0.000017812883],"study_design_scores_gemma":[0.00047160828,0.0000916649,0.01430534,0.00035297632,0.000058897178,1.2341422e-7,0.0000034707232,0.000115050745,0.97214574,0.000011821234,0.011650056,0.00079328055],"about_ca_topic_score_codex":0.00013798203,"about_ca_topic_score_gemma":0.000020241325,"teacher_disagreement_score":0.024000168,"about_ca_system_score_codex":0.00013017337,"about_ca_system_score_gemma":0.0009829852,"threshold_uncertainty_score":0.9996295},"labels":[],"label_agreement":null},{"id":"W4409962323","doi":"10.1073/pnas.2427151122","title":"Compatibility of intracellular binding: Evolutionary design principles for metal sensors","year":2025,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"Simons Foundation","keywords":"Intracellular; Compatibility (geochemistry); Cytosol; Metal; Chemistry; Biophysics; Biochemistry; Biology; Materials science; Enzyme","score_opus":0.049485139616024645,"score_gpt":0.29978793508206847,"score_spread":0.25030279546604384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409962323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980472,0.00020622705,0.000050078826,0.0010954492,0.000025329193,0.00024753925,0.00003562412,0.000002612564,0.00028997342],"genre_scores_gemma":[0.98827237,0.000039858485,0.01150156,0.000027959697,0.000026621845,0.000007881985,8.350026e-7,0.0000018372008,0.00012106285],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992032,0.000007544914,0.00028170104,0.000197905,0.00021542636,0.00009423176],"domain_scores_gemma":[0.99938357,0.000038368205,0.0002800101,0.000012083042,0.00027489587,0.000011075966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008656217,0.000064673266,0.00012363643,0.000086534,0.00008264293,0.0000042688653,0.0004594895,0.00014376124,0.0000017739779],"category_scores_gemma":[0.0004414314,0.000045812285,0.000076260505,0.00027662984,0.0007937675,0.0000060443713,0.00012654114,0.000051004004,6.9886035e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044809734,0.00004261537,0.0018394559,0.00004653588,0.000026800762,3.929391e-10,0.000008263348,0.00017517827,0.9816009,0.015893523,0.00018649228,0.00013545518],"study_design_scores_gemma":[0.00013162295,0.00011317141,0.012696262,0.000022911301,0.000014156395,9.822261e-7,0.000032893557,0.0009225747,0.97685766,0.008240202,0.00092425774,0.00004333229],"about_ca_topic_score_codex":0.0000012678955,"about_ca_topic_score_gemma":3.8598955e-8,"teacher_disagreement_score":0.011451481,"about_ca_system_score_codex":0.0000092754235,"about_ca_system_score_gemma":0.000053467527,"threshold_uncertainty_score":0.29246697},"labels":[],"label_agreement":null},{"id":"W4410136623","doi":"10.1101/2025.05.06.652344","title":"The small membrane protein YohP induces membrane depolarization and ppGpp accumulation in <i>Escherichia coli</i>","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institutes of Health; Deutsche Forschungsgemeinschaft","keywords":"Depolarization; Escherichia coli; Membrane; Chemistry; Membrane protein; Biophysics; Cell biology; Biochemistry; Biology; Gene","score_opus":0.013419748008411244,"score_gpt":0.22200442428788253,"score_spread":0.20858467627947128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410136623","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954612,0.0017726958,0.00040666337,0.0005437975,0.0005102476,0.0011363989,0.00009441977,0.00006194752,0.000012608252],"genre_scores_gemma":[0.9954093,0.0018041662,0.0020558985,0.00017378568,0.00024861228,0.00023163621,0.000004683224,0.00004924649,0.000022659991],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978982,0.00018841706,0.0004970465,0.0008572516,0.00014356973,0.00041549662],"domain_scores_gemma":[0.99849635,0.000023487684,0.00031097812,0.0008604272,0.00021639875,0.0000923296],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00050529244,0.00042306256,0.00034580674,0.00013703399,0.00019056395,0.0002171732,0.0005003833,0.0012923294,0.0000023129737],"category_scores_gemma":[0.00020502818,0.00038760237,0.00007128305,0.00034544358,0.00016715936,0.0000070864753,0.0007302204,0.00055604044,0.0000019009623],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008482164,0.000053114116,0.00092438044,0.0001770164,0.00007028756,0.00000307402,0.0000031683815,0.00004191492,0.99831027,0.00029845198,0.000009587583,0.000023930475],"study_design_scores_gemma":[0.00048628196,0.00007380585,0.016737886,0.00014909731,0.000041993226,1.4828133e-8,0.0000024574042,0.0002022222,0.97357076,0.000005112473,0.0083110025,0.000419362],"about_ca_topic_score_codex":0.00011054094,"about_ca_topic_score_gemma":0.00011715848,"teacher_disagreement_score":0.024739489,"about_ca_system_score_codex":0.00004767417,"about_ca_system_score_gemma":0.0004406624,"threshold_uncertainty_score":0.9998576},"labels":[],"label_agreement":null},{"id":"W4410221442","doi":"10.1016/j.carres.2025.109517","title":"From structure to function: Decoding peptidoglycan O-acetylation in pathogenic bacteria","year":2025,"lang":"en","type":"review","venue":"Carbohydrate Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Glycomics Network; Canadian Institutes of Health Research; Government of Ontario","keywords":"Chemistry; Peptidoglycan; Acetylation; Bacteria; Function (biology); Pathogenic bacteria; Microbiology; Computational biology; Biochemistry; Cell biology; Cell wall; Genetics; Gene","score_opus":0.046822556078790954,"score_gpt":0.3682685397628855,"score_spread":0.32144598368409455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410221442","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.052379645,0.94457704,0.000036471094,0.00010462358,0.0010279622,0.0011564645,0.0005422184,0.000020171687,0.00015540559],"genre_scores_gemma":[0.0054473598,0.9896844,0.00034087637,0.000045644556,0.0013489355,0.0001779763,0.0023893528,0.000061902574,0.00050357083],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970298,0.0005145278,0.00053170504,0.0010454102,0.0002388383,0.00063976593],"domain_scores_gemma":[0.99854356,0.0000595278,0.000102774415,0.0009160372,0.00023157854,0.00014654489],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00045500044,0.00039296038,0.00081096997,0.0006743015,0.000106985615,0.00012059305,0.00063278084,0.0014133387,0.000101201025],"category_scores_gemma":[0.0002771765,0.00036427053,0.00020983066,0.0012039074,0.00008437072,0.0000031801983,0.00076292094,0.00072511286,0.00003742192],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005194288,0.000018080615,0.0000047828994,0.0009453334,0.00008386429,0.000009052792,0.0000140861075,0.0000025690958,0.4907324,0.000026708612,0.0007067888,0.5074044],"study_design_scores_gemma":[0.00021270795,0.00024035263,0.000024404639,0.0020068905,0.00007692499,0.0000033310407,0.000025967118,0.0000044377402,0.00640375,0.00016670578,0.9904267,0.000407791],"about_ca_topic_score_codex":0.0000924584,"about_ca_topic_score_gemma":0.0004140546,"teacher_disagreement_score":0.9897199,"about_ca_system_score_codex":0.00014753011,"about_ca_system_score_gemma":0.00073713664,"threshold_uncertainty_score":0.99988306},"labels":[],"label_agreement":null},{"id":"W4410763543","doi":"10.1139/bcb-2025-0096","title":"An artifact of recombinatorial cloning challenges established beliefs of plasmid cotransformation, selection, and maintenance","year":2025,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Brandon University; University of Manitoba; Research Institute in Oncology and Hematology; Children's Hospital Research Institute of Manitoba; CancerCare Manitoba","funders":"Children's Hospital Research Institute of Manitoba; Brandon University","keywords":"Plasmid; Cloning (programming); Selection (genetic algorithm); Transformation (genetics); clone (Java method); Computer science; Vector (molecular biology); Cloning vector; Computational biology; Biology; Genetics; DNA; Gene; Recombinant DNA; Artificial intelligence","score_opus":0.004408621104773674,"score_gpt":0.21542916230500492,"score_spread":0.21102054120023125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410763543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99541557,0.0030772216,0.0001770138,0.00017201218,0.00017009431,0.00008567985,0.000030225312,0.000008590068,0.000863615],"genre_scores_gemma":[0.9939817,0.0053733494,0.00039065434,0.000025874655,0.00006250967,0.0000070059614,0.00008896559,0.000005589721,0.000064349115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999193,0.00003777333,0.00027551776,0.0003055632,0.000027383938,0.0001607465],"domain_scores_gemma":[0.99952775,0.000013694202,0.00012468618,0.00017847412,0.000114558556,0.00004080914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015105112,0.00013104352,0.0002040021,0.000042090698,0.000048871985,0.000006654334,0.000116567135,0.00047209862,0.000006632513],"category_scores_gemma":[0.000040467585,0.00012341562,0.000030682204,0.00007557236,0.00023114956,0.000003934203,0.000057318128,0.00008143234,1.06346626e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015448572,0.00007010573,0.0011574822,0.00016521376,0.000029972442,9.6221896e-8,0.000027625016,0.0000017851708,0.99210745,0.000814248,0.00006492177,0.005406624],"study_design_scores_gemma":[0.0006402596,0.0005030091,0.00072459993,0.00002208767,0.00001655923,0.0000052547107,0.00010003677,0.00002739341,0.9885533,0.0005509339,0.008741702,0.00011488422],"about_ca_topic_score_codex":0.000014158612,"about_ca_topic_score_gemma":0.000010429195,"teacher_disagreement_score":0.00867678,"about_ca_system_score_codex":0.0000045280362,"about_ca_system_score_gemma":0.00006553701,"threshold_uncertainty_score":0.5032743},"labels":[],"label_agreement":null},{"id":"W4410942579","doi":"10.1093/jambio/lxaf135","title":"The outer membrane transporter FadL was involved in the uptake of C18  <i>n</i>-alkane for enhancement of biodegradation in <i>Pseudomonas aeruginosa</i> TJM4","year":2025,"lang":"en","type":"article","venue":"Journal of Applied Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Science North","funders":"Shaanxi Provincial Science and Technology Department; National Natural Science Foundation of China","keywords":"Alkane; Pseudomonas aeruginosa; Mutant; Biofilm; Bacteria; Pseudomonadaceae; Efflux; Bacterial outer membrane; Microbiology; Pseudomonadales; Chemistry; Biodegradation; Biology; Gene; Biochemistry; Bioremediation; Escherichia coli; Genetics; Organic chemistry","score_opus":0.006798308160928614,"score_gpt":0.22204822765165713,"score_spread":0.21524991949072853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410942579","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962301,0.00086183054,0.00071610836,0.0013133474,0.00026570092,0.0004245562,0.000033193097,0.0000010045799,0.00015410481],"genre_scores_gemma":[0.99684113,0.0012923778,0.0012835271,0.0004082273,0.000055610217,0.000022483171,0.000059852176,0.000007099632,0.000029717554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860966,0.00004063487,0.000906783,0.00017753699,0.00004544096,0.00021994227],"domain_scores_gemma":[0.99913746,0.000051496518,0.00043942634,0.0002518707,0.00010662822,0.000013114756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007565059,0.00014304614,0.00034869852,0.000118226206,0.000029738005,0.0000064785636,0.0004483731,0.0003045848,0.0000029974992],"category_scores_gemma":[0.000017369013,0.000086640764,0.00013090362,0.00015952563,0.00021378245,0.0000022481847,0.000043666136,0.0001682946,2.2940911e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010328811,0.0001469496,0.00011104548,0.000040792962,0.000075817115,0.0000010322719,0.00009128678,0.000010664643,0.98947686,0.0005831808,0.00043593417,0.007993542],"study_design_scores_gemma":[0.0016360407,0.00041571213,0.0005599433,0.000028694874,0.000034099405,0.00000987278,0.00023223375,0.0000015395441,0.9322241,0.00034798527,0.06443629,0.00007352123],"about_ca_topic_score_codex":0.000008172126,"about_ca_topic_score_gemma":0.00028935555,"teacher_disagreement_score":0.06400035,"about_ca_system_score_codex":0.000014374342,"about_ca_system_score_gemma":0.000112656984,"threshold_uncertainty_score":0.35331076},"labels":[],"label_agreement":null},{"id":"W4411660178","doi":"10.51847/c5waffaszs","title":"10.51847/C5WafFAsZs","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Escherichia coli; Chromatography; Chemistry; Biochemistry; Gene","score_opus":0.0036531771658610923,"score_gpt":0.1742037110975641,"score_spread":0.17055053393170302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411660178","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17644338,0.00014814772,0.0000021925202,0.0004942292,0.000008405418,0.00016813945,0.000029150338,0.000049141618,0.8226572],"genre_scores_gemma":[0.013352223,0.00000580682,0.00022588196,0.0001344775,0.00023749121,0.000011408032,0.00007096228,0.00002061157,0.9859411],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992965,0.000018393246,0.000119650314,0.0002729901,0.000058969916,0.00023351586],"domain_scores_gemma":[0.99951786,0.0000021830674,0.000017830791,0.0003466,0.000028695351,0.00008682554],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000058093738,0.0001200454,0.00010296948,0.00002978926,0.000042598378,0.00001936112,0.00021898677,0.00020419237,0.8766895],"category_scores_gemma":[0.000013345982,0.00011573392,0.000050288523,0.000084967825,0.000042519205,9.2140436e-7,0.000076353506,0.000049893904,0.76019126],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008336956,0.000027207328,2.741014e-7,0.0000014363468,0.000014198938,0.0000013292414,0.00000108734,0.000009246614,0.35847244,7.290002e-7,0.01279018,0.6285985],"study_design_scores_gemma":[0.000170071,0.0004287196,0.00004414388,0.000002611545,0.00000562903,0.000011639018,3.3079738e-7,0.000007819169,0.04953604,0.0000016730089,0.94963473,0.00015658078],"about_ca_topic_score_codex":0.000004950455,"about_ca_topic_score_gemma":3.2343385e-7,"teacher_disagreement_score":0.9368446,"about_ca_system_score_codex":0.0000051480697,"about_ca_system_score_gemma":0.000021274429,"threshold_uncertainty_score":0.47194925},"labels":[],"label_agreement":null},{"id":"W4412027403","doi":"10.1007/s11357-025-01769-5","title":"Gene expression and co-expression heterogeneity patterns and biodemography analyses during the cell cycle encourage aging studies in archaea","year":2025,"lang":"en","type":"article","venue":"GeroScience","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Charles-Le Moyne; Canadian Institute for Advanced Research; Université de Montréal; Université de Sherbrooke","funders":"European Research Council; Sorbonne Université; Agence Nationale de la Recherche; European Commission","keywords":"Archaea; Gene expression; Biology; Expression (computer science); Gene; Computational biology; Cell cycle; Genetics; Cell biology; Computer science","score_opus":0.023993164001335915,"score_gpt":0.3244173919762232,"score_spread":0.3004242279748873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412027403","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954261,0.003763375,0.00047302048,0.000103494385,0.00009486139,0.000105795654,0.000011984429,0.000007804295,0.000013569886],"genre_scores_gemma":[0.99503386,0.0043694456,0.00043679329,0.00009187114,0.000023253973,0.000012236216,0.0000032694459,0.000004029721,0.000025238945],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991114,0.000058403664,0.0001395561,0.000407402,0.00007122837,0.00021197669],"domain_scores_gemma":[0.9996371,0.00001431636,0.000053519754,0.00024439197,0.000019046889,0.00003157299],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001742372,0.00011730767,0.00011814952,0.00009471572,0.00021662014,0.000035032805,0.00018604973,0.00009151691,5.6104e-7],"category_scores_gemma":[0.000024538338,0.000079268844,0.00002721207,0.00015490493,0.00040905847,0.0000053181857,0.00047025114,0.00007949322,1.2800577e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010538519,0.000014844925,0.06019681,0.000030808766,0.0000037702837,0.000001811613,0.00007680804,0.000015947744,0.9391294,8.378454e-7,0.000003915667,0.00051451736],"study_design_scores_gemma":[0.00019507845,0.000041559102,0.07949538,0.000040504863,0.000004208521,0.000004209756,0.0002003506,0.00004474428,0.9197775,0.00003089797,0.00008044206,0.00008513233],"about_ca_topic_score_codex":0.000018197505,"about_ca_topic_score_gemma":0.000050127,"teacher_disagreement_score":0.0193519,"about_ca_system_score_codex":0.00000538607,"about_ca_system_score_gemma":0.000010818375,"threshold_uncertainty_score":0.32324898},"labels":[],"label_agreement":null},{"id":"W4412785590","doi":"10.1038/s41467-025-62457-8","title":"The structure of the Tad pilus alignment complex reveals a periplasmic conduit for pilus extension","year":2025,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto","funders":"Biotechnology and Biological Sciences Research Council; Human Frontier Science Program; Research Councils UK; King's College London; Imperial College London; DeepMind","keywords":"Pilus; Periplasmic space; Cell biology; Biology; Bacterial cell structure; Biophysics; Chemistry; Virulence; Biochemistry; Genetics; Bacteria; Escherichia coli; Gene","score_opus":0.015124748265037128,"score_gpt":0.2943820642287428,"score_spread":0.2792573159637057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412785590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9552985,0.014374552,0.00031991236,0.026509471,0.00086028624,0.0014037733,0.00040194567,0.000019525787,0.0008120426],"genre_scores_gemma":[0.99577796,0.0008158631,0.0019622056,0.00091306644,0.000033666383,0.000024307657,0.00011402486,0.000008907693,0.00034998544],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993044,0.000095251286,0.00021697259,0.00017564431,0.00006532323,0.0001424124],"domain_scores_gemma":[0.9975354,0.00007375506,0.00013316635,0.0020407834,0.00020030895,0.00001658333],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012129536,0.000106670974,0.00012012761,0.00002152805,0.0004634796,0.000020341844,0.0013326046,0.0004116324,0.000002468166],"category_scores_gemma":[0.00016484181,0.00006461672,0.00009891061,0.0001379291,0.00034237423,0.0000010498588,0.000762614,0.00028045254,2.9143342e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003247282,0.000025688665,0.00013516437,0.000007687468,0.000049441987,1.2897632e-8,0.00001552326,0.0000037648458,0.9640369,0.025367785,0.009355917,0.0009696699],"study_design_scores_gemma":[0.0003657511,0.000079184065,0.0063163284,0.000021188867,0.000043336026,0.0000036797978,0.000060668972,0.00008590257,0.3997488,0.003625131,0.589562,0.000088009605],"about_ca_topic_score_codex":0.000010816345,"about_ca_topic_score_gemma":0.00051317556,"teacher_disagreement_score":0.5802061,"about_ca_system_score_codex":0.000016494809,"about_ca_system_score_gemma":0.00006635501,"threshold_uncertainty_score":0.35647574},"labels":[],"label_agreement":null},{"id":"W4413003191","doi":"10.21203/rs.3.rs-7023205/v1","title":"A Novel Molecular Mechanism for Effector Protein Wrapping and Delivery by the Bacterial Type VI Secretion System","year":2025,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Effector; Secretion; Mechanism (biology); Type three secretion system; Cell biology; Chemistry; Computational biology; Biology; Biochemistry; Philosophy; Gene; Epistemology","score_opus":0.02169645469271179,"score_gpt":0.30199738847022994,"score_spread":0.28030093377751814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413003191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98268026,0.0013467509,0.009977168,0.00055846985,0.0005089904,0.0037625832,0.0010480755,0.000034581408,0.00008314369],"genre_scores_gemma":[0.9953348,0.00032812043,0.0011355157,0.00003857266,0.0004266494,0.0009728571,0.0013930703,0.000038570382,0.0003318534],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980235,0.0002737567,0.00024564617,0.0007422691,0.00025014495,0.00046467705],"domain_scores_gemma":[0.9984973,0.00004297964,0.0000975381,0.0006551147,0.0006295978,0.00007748109],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008388679,0.0002659149,0.00026997153,0.00011408281,0.00022685765,0.00015815375,0.00046680172,0.001066806,0.0000041474773],"category_scores_gemma":[0.00026458828,0.00021267618,0.00012122916,0.00013601725,0.00014815103,0.0000017017305,0.0014344448,0.00050537876,0.0000021954845],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003692173,0.000032549182,0.0000024705728,0.0013592622,0.00012152691,0.0000014347102,0.000012174435,0.0000031052584,0.99445593,0.0019840742,0.0004883517,0.0011699093],"study_design_scores_gemma":[0.0007469328,0.0010266966,0.000018954017,0.00065644516,0.000038179664,0.0000086867685,0.00009099783,0.0007444199,0.9825924,0.00033432365,0.01345447,0.00028747047],"about_ca_topic_score_codex":0.00014348149,"about_ca_topic_score_gemma":0.000027078991,"teacher_disagreement_score":0.012966118,"about_ca_system_score_codex":0.00006701116,"about_ca_system_score_gemma":0.00032925495,"threshold_uncertainty_score":0.86726826},"labels":[],"label_agreement":null},{"id":"W4413056070","doi":"10.1371/journal.ppat.1013291","title":"Inactivation of branched-chain amino acid uptake halts Staphylococcus aureus growth and induces bacterial quiescence within macrophages","year":2025,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Julius-Maximilians-Universität Würzburg; Deutsche Forschungsgemeinschaft; Graduate School of Life Sciences, Julius-Maximilians-Universität Würzburg; Deutscher Akademischer Austauschdienst","keywords":"Staphylococcus aureus; Intracellular; Biology; Mutant; Intracellular parasite; Microbiology; Cell biology; Repressor; Bacteria; Amino acid; Gene; Biochemistry; Gene expression; Genetics","score_opus":0.008517407415552968,"score_gpt":0.21901115106003777,"score_spread":0.2104937436444848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413056070","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99826175,0.00048624113,0.0001915281,0.00023386028,0.00029084025,0.0002494589,0.00014010369,0.000019444824,0.00012674673],"genre_scores_gemma":[0.9978148,0.00035160387,0.0014136141,0.000096274365,0.00014656405,0.000020956599,0.00008857565,0.000015907977,0.00005175506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888587,0.000064723965,0.00032009472,0.00041124708,0.00009670221,0.00022134614],"domain_scores_gemma":[0.99934745,0.000010901073,0.00017454148,0.0003059458,0.00011151206,0.0000496395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117637035,0.00019602098,0.00024007694,0.000102547834,0.00007537689,0.00002716904,0.00019416727,0.00039504832,0.000007507442],"category_scores_gemma":[0.00019268789,0.0001849101,0.000049987506,0.00016983261,0.00019137947,0.000005474782,0.0002010455,0.00012066541,9.3437984e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015616932,0.000095702846,0.0012746633,0.00008467499,0.00007257712,0.0000028326704,0.00008309015,7.916289e-7,0.99528897,0.00026386193,0.000036428806,0.002640243],"study_design_scores_gemma":[0.0004682443,0.00032857113,0.020296404,0.000040913175,0.000036547117,0.0000019452675,0.00008006108,0.000011599501,0.97806895,0.00018815472,0.00031152184,0.00016707965],"about_ca_topic_score_codex":0.000018386178,"about_ca_topic_score_gemma":0.00003161703,"teacher_disagreement_score":0.01902174,"about_ca_system_score_codex":0.000009468425,"about_ca_system_score_gemma":0.000083580686,"threshold_uncertainty_score":0.7540415},"labels":[],"label_agreement":null},{"id":"W4413113097","doi":"10.1016/j.str.2025.07.013","title":"Small molecule dysregulation of ClpP activity via bidirectional allosteric pathways","year":2025,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Allosteric regulation; Small molecule; Effector; Protease; Cell biology; Chemistry; Mechanism (biology); Biology; Biochemistry; Biophysics; Enzyme","score_opus":0.006954058111072602,"score_gpt":0.20908572510153645,"score_spread":0.20213166699046384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413113097","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965199,0.0002378319,0.0021636274,0.0001448034,0.00042663244,0.00010661931,0.000058622816,0.000012525482,0.00032938627],"genre_scores_gemma":[0.99857324,0.000032439762,0.00088596815,0.00007902285,0.00011804713,0.0000034372645,0.00012724007,0.000008047419,0.00017253203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999449,0.000028411083,0.0001179568,0.00023151819,0.000051133855,0.00012198172],"domain_scores_gemma":[0.9995992,0.0000031909162,0.000071423834,0.0002385369,0.000067504654,0.000020142406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003154262,0.00010883187,0.000114812145,0.00005492036,0.00003931929,0.000007649538,0.00012180922,0.00031882722,0.00002746069],"category_scores_gemma":[0.000016936288,0.000100868434,0.0000567609,0.00013035275,0.000058871028,0.0000011431703,0.00010632896,0.00007582153,8.8875106e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072759314,0.00001701031,0.0005586557,0.000017938866,0.00004676278,3.3331267e-7,0.000004625888,0.000017728016,0.9873334,0.00020445685,0.0001547411,0.011571567],"study_design_scores_gemma":[0.000219316,0.00011814544,0.02422692,0.0000058385217,0.000016404161,0.0000039514457,0.0000031556465,0.00005332919,0.96768934,0.0009719668,0.006599535,0.00009209265],"about_ca_topic_score_codex":0.000014121218,"about_ca_topic_score_gemma":0.00005153785,"teacher_disagreement_score":0.023668265,"about_ca_system_score_codex":0.000009082995,"about_ca_system_score_gemma":0.000056005436,"threshold_uncertainty_score":0.41132954},"labels":[],"label_agreement":null},{"id":"W4413117138","doi":"10.1371/journal.pgen.1011542","title":"Polymerization and flanking domains of the bactofilin BacA collectively regulate stalk formation in Asticcacaulis biprosthecum","year":2025,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Stalk; 5' flanking region; Genetics; Cell biology; Evolutionary biology; Gene; Promoter; Gene expression","score_opus":0.005429860335403158,"score_gpt":0.20708874559595777,"score_spread":0.20165888526055462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413117138","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977595,0.0007066726,0.00051250524,0.00027587565,0.000102839345,0.00029227042,0.000029514815,0.000005722948,0.0003150762],"genre_scores_gemma":[0.9987187,0.0004639301,0.00052499486,0.00008665875,0.00002902341,0.000010936299,0.000027081496,0.000010317637,0.00012839613],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992617,0.00005719475,0.00024819185,0.00019844985,0.00007938491,0.0001550807],"domain_scores_gemma":[0.9995585,0.000010291889,0.00010708575,0.00024397098,0.000062008854,0.000018124207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006701809,0.000111839436,0.00012803616,0.00008860148,0.00006317114,0.000016467815,0.00015186281,0.00022409686,0.0000031742775],"category_scores_gemma":[0.00006040799,0.00009291943,0.000032085838,0.0002977859,0.00012095861,0.0000026329235,0.00019951412,0.000072717165,2.7750454e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005389491,0.0000385514,0.0030707435,0.000032992386,0.000023019647,2.2571504e-7,0.000047011115,0.000053060732,0.9951021,0.00013955156,0.000030293715,0.0014085673],"study_design_scores_gemma":[0.00049612176,0.00012171012,0.014787898,0.000042727686,0.00002299578,0.0000033291935,0.0000488824,0.0012411617,0.9816563,0.00037755613,0.0011081184,0.00009317267],"about_ca_topic_score_codex":0.000004983156,"about_ca_topic_score_gemma":0.00010742332,"teacher_disagreement_score":0.013445762,"about_ca_system_score_codex":0.000015206618,"about_ca_system_score_gemma":0.000057024015,"threshold_uncertainty_score":0.37891445},"labels":[],"label_agreement":null},{"id":"W4413286172","doi":"10.1128/mbio.01288-25","title":"(p)ppGpp-dependent activation of gene expression during nutrient limitation","year":2025,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Columbia College","funders":"National Institute of General Medical Sciences","keywords":"Repressor; Transcription (linguistics); Cell biology; Gene; Stringent response; Biology; Gene expression; Regulation of gene expression; Ribosome; Protein biosynthesis; Bacillus subtilis; Guanosine; Transcription factor; RNA polymerase; RNA; Biochemistry; Chemistry; Genetics; Mutant; Bacteria","score_opus":0.006646967353435909,"score_gpt":0.2237360153481576,"score_spread":0.21708904799472167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413286172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960564,0.00014844887,0.0029988505,0.00018290075,0.000139545,0.00012038383,0.000007063627,0.000010341675,0.00033609773],"genre_scores_gemma":[0.99797624,0.00013032876,0.0011060755,0.000041907853,0.00005833716,0.000011700085,0.000082826635,0.0000059983504,0.00058658264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994727,0.000019175262,0.00015445834,0.00019281916,0.000058517995,0.00010236872],"domain_scores_gemma":[0.9996303,0.0000032691316,0.000070553055,0.00021889093,0.000060814033,0.00001621095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004862254,0.00007355983,0.00007981375,0.00005924437,0.000040751336,0.000007570514,0.00009895262,0.00019075195,0.0000062867234],"category_scores_gemma":[0.00003307711,0.00007018919,0.000036933117,0.000076094846,0.000030684387,0.0000017198245,0.00008332014,0.00004343877,0.0000021592748],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008731551,0.00005663081,0.0006094389,0.000021669348,0.000014799902,2.2427284e-7,0.000013985281,0.000015318345,0.9980984,0.00013331386,0.00016163258,0.0007873125],"study_design_scores_gemma":[0.00043886245,0.000072071416,0.007489279,0.000024439618,0.0000064887777,9.0558973e-7,0.00003311822,0.0000061841556,0.9885597,0.00013704617,0.0031655289,0.00006634448],"about_ca_topic_score_codex":0.000005879234,"about_ca_topic_score_gemma":0.0000030139688,"teacher_disagreement_score":0.009538627,"about_ca_system_score_codex":0.000012173685,"about_ca_system_score_gemma":0.000026958814,"threshold_uncertainty_score":0.28622323},"labels":[],"label_agreement":null},{"id":"W4413341071","doi":"10.1101/2025.08.12.669831","title":"Contrasts and similarities in the transcriptomic response to antimicrobial coinage metals in <i>Escherichia coli</i>","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Defence and Security Accelerator; Natural Sciences and Engineering Research Council of Canada; Cumming School of Medicine, University of Calgary","keywords":"Escherichia coli; Antimicrobial; Transcriptome; Microbiology; Biology; Genetics; Gene; Gene expression","score_opus":0.00778902760097942,"score_gpt":0.21319347156459087,"score_spread":0.20540444396361146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413341071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99428606,0.0011626044,0.00016977696,0.002385282,0.00045741384,0.0010011332,0.00050157873,0.000029011624,0.0000071295453],"genre_scores_gemma":[0.9949903,0.0007433609,0.0011871555,0.0027582543,0.000113656155,0.00015993376,0.0000012674941,0.000036917318,0.000009180643],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976638,0.00043048864,0.00046580256,0.0008526875,0.00011692001,0.00047030058],"domain_scores_gemma":[0.99884266,0.000053486587,0.000112840076,0.00081474945,0.00009646934,0.00007977804],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010789415,0.000421846,0.0005024652,0.00026003996,0.00006443135,0.00013754048,0.0006307383,0.0009031682,0.0000029422438],"category_scores_gemma":[0.0002332114,0.0003995243,0.00009155951,0.00035963557,0.00017730029,0.00000459061,0.00042992338,0.00055810343,0.0000018871849],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065439,0.00009656939,0.000703642,0.00011993972,0.00004986177,0.000028950299,0.000023112776,0.000022469649,0.9978736,0.00008248328,0.00034296836,0.00000200482],"study_design_scores_gemma":[0.0009708794,0.0001643972,0.06386977,0.00019152251,0.00004807022,5.228295e-8,0.000011439985,0.000020802114,0.9065969,0.0000020011253,0.027628865,0.0004952781],"about_ca_topic_score_codex":0.00008284063,"about_ca_topic_score_gemma":0.00014071832,"teacher_disagreement_score":0.09127668,"about_ca_system_score_codex":0.000047130474,"about_ca_system_score_gemma":0.0003999546,"threshold_uncertainty_score":0.9998457},"labels":[],"label_agreement":null},{"id":"W4413352948","doi":"10.3390/microorganisms13081939","title":"PapB Family Regulators as Master Switches of Fimbrial Expression","year":2025,"lang":"en","type":"review","venue":"Microorganisms","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institut National de la Recherche Scientifique; Cegep de Saint Hyacinthe","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Fimbria; Operon; Biology; Pilus; Computational biology; Genetics; Bacterial adhesin; Cell biology; Gene; Escherichia coli","score_opus":0.014310135913609091,"score_gpt":0.2604738554204581,"score_spread":0.246163719506849,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413352948","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0075975177,0.9903611,0.00006056706,0.000019625182,0.0008227329,0.00047724711,0.00014279078,0.000021070779,0.0004973716],"genre_scores_gemma":[0.00062575226,0.9946543,0.0007545301,0.00006186258,0.00039927097,0.000023786839,0.0004827299,0.000065655186,0.0029321155],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99824804,0.00008062983,0.00061645336,0.000643592,0.00010938364,0.00030187625],"domain_scores_gemma":[0.998683,0.000013804213,0.00035462203,0.00081842934,0.00007049071,0.000059650272],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000116752584,0.00045288884,0.0010476434,0.00013240083,0.00005160984,0.000026574144,0.00060221244,0.0015521302,0.000062151346],"category_scores_gemma":[0.000053356845,0.00037143604,0.00041174627,0.00018105877,0.00013446414,0.0000013912039,0.00064146466,0.00020974108,0.00003684011],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019177056,0.000036272824,0.0000011048623,0.002156639,0.00008602323,0.000001863989,0.0000054309953,3.96851e-8,0.8253979,0.00001813985,0.002150451,0.17012693],"study_design_scores_gemma":[0.00014081247,0.00013121907,0.0000019022963,0.001368879,0.00013299102,0.000011804919,0.0000078907415,8.906627e-9,0.43062055,0.000026181253,0.56734574,0.0002119904],"about_ca_topic_score_codex":0.000008925611,"about_ca_topic_score_gemma":0.0000029372466,"teacher_disagreement_score":0.5651953,"about_ca_system_score_codex":0.000018767318,"about_ca_system_score_gemma":0.00041382157,"threshold_uncertainty_score":0.99987376},"labels":[],"label_agreement":null},{"id":"W4414824933","doi":"10.1101/2025.10.02.679994","title":"Comparative Analysis of Gene Importance in <i>Escherichia coli</i> Across Growth Conditions","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de recherche du Québec – Nature et technologies; Université de Sherbrooke; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Alliance de recherche numérique du Canada; Compute Canada","keywords":"Gene; Genome; Transposable element; Mutagenesis; Gene prediction; Set (abstract data type); Organism; Model organism","score_opus":0.011269250793158186,"score_gpt":0.25478881975715195,"score_spread":0.24351956896399377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414824933","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941541,0.0010851136,0.0004139423,0.00009119715,0.0003548702,0.00044157842,0.0034005952,0.000036780002,0.000021803966],"genre_scores_gemma":[0.99628526,0.00064657314,0.0025761307,0.00019939414,0.000100763085,0.00013860181,0.000022072672,0.000023506627,0.000007684096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976855,0.0001100626,0.0006825744,0.00093157426,0.0001508071,0.000439508],"domain_scores_gemma":[0.9978269,0.000018086052,0.00048923574,0.0010876069,0.00047942772,0.000098782744],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002967721,0.00042189157,0.00092382875,0.00030714824,0.000071779265,0.000045093555,0.0006118447,0.0009972827,0.000014960118],"category_scores_gemma":[0.00007437514,0.00047646835,0.00027227713,0.0012950154,0.00027607617,0.0000041949675,0.0005439261,0.00042258247,0.0000022084039],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005044958,0.00016610842,0.026132971,0.00008777991,0.0011253814,0.000006526606,0.000010206222,0.00020363623,0.9718616,0.00023432265,0.0001208183,1.77771e-7],"study_design_scores_gemma":[0.0003292356,0.00006132797,0.19893281,0.00004623144,0.0003359507,3.2194654e-9,0.000006076004,0.00013188581,0.7985952,0.0000018777786,0.0011866912,0.00037274155],"about_ca_topic_score_codex":0.00010424269,"about_ca_topic_score_gemma":0.00015537858,"teacher_disagreement_score":0.17326646,"about_ca_system_score_codex":0.00006427994,"about_ca_system_score_gemma":0.0004514858,"threshold_uncertainty_score":0.9997687},"labels":[],"label_agreement":null},{"id":"W4414985606","doi":"10.1128/jb.00359-25","title":"Compositional analysis of bacterial peptidoglycan: insights from peptidoglycomics into structure and function","year":2025,"lang":"en","type":"review","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada); University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Peptidoglycan; Function (biology); Component (thermodynamics); Cell wall; Bacterial protein; Bacterial cell structure; Protein structure; Structural integrity; Cell function","score_opus":0.007999279800681516,"score_gpt":0.2520547661953918,"score_spread":0.24405548639471028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414985606","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.35114527,0.64683384,0.00016403807,0.000021032529,0.0011359352,0.00013913427,0.00054629263,0.0000028931377,0.0000116083775],"genre_scores_gemma":[0.02847471,0.9659809,0.0013676792,0.000050064555,0.00094261375,0.0000036579543,0.0031339768,0.000024400046,0.000022023567],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977615,0.00029347962,0.0012410799,0.00041461107,0.00011193601,0.00017739553],"domain_scores_gemma":[0.9975771,0.000090285044,0.0016079283,0.00037571214,0.00026010556,0.000088895154],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00010359105,0.00040674812,0.0023101093,0.00075797236,0.000054383043,0.000029093137,0.0004063684,0.0014324221,0.00009028165],"category_scores_gemma":[0.0000687977,0.0003225166,0.0007196562,0.00036006633,0.00026641926,0.0000063418556,0.00030700592,0.00040980394,5.8014865e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009941679,0.00012204243,0.00010838648,0.0017069876,0.0134818675,0.000014244839,0.00005228317,0.000011048833,0.6929114,0.00019913078,0.00035190253,0.29004654],"study_design_scores_gemma":[0.0008392498,0.0017302806,0.0016331556,0.0011648743,0.012469566,0.00012937195,0.00001978795,0.0000047853114,0.003471548,0.00041404413,0.9776264,0.0004969734],"about_ca_topic_score_codex":0.000022048987,"about_ca_topic_score_gemma":0.00009577042,"teacher_disagreement_score":0.9772745,"about_ca_system_score_codex":0.000039747643,"about_ca_system_score_gemma":0.00044642144,"threshold_uncertainty_score":0.9999227},"labels":[],"label_agreement":null},{"id":"W4415072014","doi":"10.1016/j.jmb.2025.169485","title":"Molecular Insights into CLD Domain Dynamics and Toxin Recruitment of the HlyA E. coli T1SS","year":2025,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Corrections; Gauss Centre for Supercomputing; Helmholtz Association; Jülich Supercomputing Centre, Forschungszentrum Jülich; Deutsche Forschungsgemeinschaft; Heinrich-Heine-Universität Düsseldorf; European Synchrotron Radiation Facility; Ontario Ministry of Research, Innovation and Science","keywords":"Allosteric regulation; Virulence; Secretion; Escherichia coli; ATP-binding cassette transporter; Bacterial outer membrane; Protein structure; Plasma protein binding; Transporter; Hemolysin","score_opus":0.006667777597393643,"score_gpt":0.2594334498191873,"score_spread":0.2527656722217937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415072014","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9808121,0.005485547,0.010423833,0.002201222,0.0005228024,0.00027086498,0.000007746917,0.0000028823476,0.0002730215],"genre_scores_gemma":[0.99559754,0.00089245,0.0026200667,0.0007564981,0.000048860285,0.000008030169,0.000012024446,0.000013861853,0.000050664083],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998666,0.00023912097,0.00053455366,0.0002525689,0.000097850665,0.0002099395],"domain_scores_gemma":[0.9989131,0.000014659491,0.0003931504,0.00041653228,0.00020277762,0.000059799964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026355663,0.0001912794,0.00034598235,0.00013987094,0.00005921477,0.000012743911,0.0004767087,0.00050151325,0.0000026195569],"category_scores_gemma":[0.00011555669,0.00013432452,0.0001943159,0.0002036713,0.0003870666,0.000002202115,0.00043029283,0.00022766329,3.1490765e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012609012,0.00006906912,0.0006817564,0.000022639017,0.00021482482,0.00001198513,0.000023301385,0.000019750885,0.9752544,0.018511422,0.00008597864,0.004978736],"study_design_scores_gemma":[0.00084565574,0.00083150563,0.0011016593,0.000045900924,0.000066331624,0.000053052176,0.000068823814,0.000026929905,0.96403,0.010810196,0.021980895,0.00013903073],"about_ca_topic_score_codex":0.000011367429,"about_ca_topic_score_gemma":0.00004246263,"teacher_disagreement_score":0.021894917,"about_ca_system_score_codex":0.000037272603,"about_ca_system_score_gemma":0.00017936096,"threshold_uncertainty_score":0.54775953},"labels":[],"label_agreement":null},{"id":"W4415629993","doi":"10.1021/acschembio.5c00753","title":"Exploring Metalloproteome Remodeling in Calprotectin-Stressed <i>Acinetobacter baumannii</i> Using Chemoproteomics","year":2025,"lang":"en","type":"article","venue":"ACS Chemical Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases; National Institute of Allergy and Infectious Diseases; Division of Molecular and Cellular Biosciences; National Institute of General Medical Sciences","keywords":"Enzyme; Strain (injury); Host–pathogen interaction; Calprotectin; GTP'; Quantitative proteomics; Translation (biology); Pathogen; Metabolic pathway","score_opus":0.05085497437255886,"score_gpt":0.2714608082605482,"score_spread":0.22060583388798932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415629993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99679846,0.00034441854,0.0013020253,0.0004988811,0.00031666268,0.00041930896,0.000015863852,0.000038512506,0.0002658937],"genre_scores_gemma":[0.9925293,0.00033230096,0.0061158924,0.00047955598,0.00022716593,0.00011036694,0.00012168007,0.000029785182,0.000053949603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99798995,0.000066154316,0.00051279285,0.0007846112,0.00006177165,0.0005846987],"domain_scores_gemma":[0.9991641,0.00001823208,0.000110946836,0.00055236765,0.00008661086,0.00006773848],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024108388,0.00031909245,0.00041618466,0.0001699907,0.00006222991,0.000023913497,0.00044738917,0.0007362932,0.000012260311],"category_scores_gemma":[0.00020778668,0.0003073986,0.00011354802,0.00034987458,0.0002515549,0.000008264318,0.0005154633,0.0003990933,0.000004742173],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016904404,0.000055700413,0.00068103895,0.000026342004,0.00004748311,0.0000024038254,0.000009128504,0.000040405354,0.99339825,0.00040067226,0.000014107643,0.0051554446],"study_design_scores_gemma":[0.0008621297,0.00008533433,0.00014314555,0.0000403022,0.000020446949,0.000012832639,0.000019752964,0.00026293175,0.9902101,0.0009115526,0.0071122986,0.00031918113],"about_ca_topic_score_codex":0.00009082946,"about_ca_topic_score_gemma":0.00001943701,"teacher_disagreement_score":0.007098191,"about_ca_system_score_codex":0.000059420614,"about_ca_system_score_gemma":0.00009253357,"threshold_uncertainty_score":0.99993783},"labels":[],"label_agreement":null},{"id":"W4415721982","doi":"10.21203/rs.3.rs-7024135/v1","title":"Dual regulatory role of IS91-encoded Orf121 in IS91 transposition","year":2025,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Institut National de la Santé et de la Recherche Médicale; Université de Sherbrooke","keywords":"Transposase; Transposition (logic); Insertion sequence; Gene; Stop codon; Transposable element; Genome; Integrases","score_opus":0.018096281960870278,"score_gpt":0.33070942223784483,"score_spread":0.31261314027697457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415721982","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992645,0.004203047,0.000064437205,0.0004277193,0.00018659566,0.0006587264,0.0004317736,0.000015103814,0.001367596],"genre_scores_gemma":[0.99601746,0.0019415544,0.00038558405,0.000019451476,0.00019406668,0.00009900506,0.0008181873,0.000021744305,0.0005029722],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99757135,0.00042593383,0.00046560168,0.00069490646,0.00036942874,0.00047279493],"domain_scores_gemma":[0.9985684,0.00002588798,0.00010120012,0.00088352,0.00036038572,0.00006057235],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00093985075,0.00022696992,0.0003680306,0.00042071412,0.000060058806,0.000025787911,0.0004785931,0.0014541334,0.00003995214],"category_scores_gemma":[0.000105512285,0.00023459563,0.00016740235,0.00029558697,0.00030141388,0.0000018390419,0.0008319999,0.000826417,0.0000034710838],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022621162,0.00018578826,0.0016282846,0.0005138978,0.000059936512,0.0000063792,0.000086600594,0.00019386859,0.9882717,0.0005285467,0.00030718403,0.007991589],"study_design_scores_gemma":[0.0005654163,0.0004907991,0.013386103,0.00050573406,0.000015055952,0.0000029976707,0.0002519369,0.00014925342,0.97365475,0.0025440573,0.008161054,0.00027286392],"about_ca_topic_score_codex":0.00026462946,"about_ca_topic_score_gemma":0.00029278581,"teacher_disagreement_score":0.014616985,"about_ca_system_score_codex":0.00006384174,"about_ca_system_score_gemma":0.00058848265,"threshold_uncertainty_score":0.99984217},"labels":[],"label_agreement":null},{"id":"W4415979433","doi":"10.1101/2025.11.05.686661","title":"Tn <i>3</i> -derived inverted-repeat miniature elements (TIMEs) that mobilize antibiotic resistance genes","year":2025,"lang":"","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Environmental Restoration and Conservation Agency","keywords":"Mobile genetic elements; Plasmid; Transposable element; Transposase; Gene; Insertion sequence; DNA Transposable Elements; Enterobacteriaceae","score_opus":0.008653612204298415,"score_gpt":0.21033049576118973,"score_spread":0.2016768835568913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415979433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95988864,0.027338201,0.0005324962,0.0012924877,0.0055275196,0.0026000785,0.0023992527,0.00029091755,0.00013040494],"genre_scores_gemma":[0.9598342,0.027863998,0.0092164865,0.0011943906,0.001007957,0.00017077485,0.00001867816,0.00024800544,0.00044550604],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9911619,0.00049749296,0.0016937815,0.0040682624,0.0006615762,0.001917008],"domain_scores_gemma":[0.9922267,0.000049220464,0.0013923818,0.0046900203,0.0010592678,0.0005824167],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0008238607,0.0020797981,0.0017295787,0.00045970723,0.00055064063,0.00045672266,0.0025650614,0.0049895803,0.00012782555],"category_scores_gemma":[0.00029959533,0.0022975022,0.00073447975,0.0009582113,0.0008304117,0.00002476649,0.0031000802,0.0015374444,0.00007485572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004190316,0.0005012468,0.0039193886,0.0011558081,0.0011762067,0.00006370033,0.0000065822123,0.000012255361,0.9895548,0.00015165881,0.0029990461,0.00004025007],"study_design_scores_gemma":[0.0014889005,0.000254883,0.0062167905,0.0008176133,0.00047096578,8.145139e-8,0.000009216554,0.00006137345,0.7934815,0.0000026616988,0.19537015,0.0018258044],"about_ca_topic_score_codex":0.000039132625,"about_ca_topic_score_gemma":0.000052682455,"teacher_disagreement_score":0.19607328,"about_ca_system_score_codex":0.00028950404,"about_ca_system_score_gemma":0.001758718,"threshold_uncertainty_score":0.9991944},"labels":[],"label_agreement":null},{"id":"W4416019393","doi":"10.1016/j.jsb.2025.108260","title":"Crystal structure of Escherichia coli type I signal peptidase P84A in complex with lipopeptide antibiotic arylomycin A2","year":2025,"lang":"en","type":"article","venue":"Journal of Structural Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Government of Saskatchewan; Natural Sciences and Engineering Research Council of Canada; National Research Council; Canadian Institutes of Health Research; National Research Council Canada; Canada Foundation for Innovation; University of Saskatchewan","keywords":"Periplasmic space; Escherichia coli; Signal peptidase; Hydrolase; Serine; Alanine; Protein structure; Enzyme; Signal peptide","score_opus":0.007328050885535491,"score_gpt":0.2431867821836146,"score_spread":0.23585873129807913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416019393","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99863386,0.0005065434,0.00007548807,0.00024299056,0.00027431766,0.00013334544,0.000050419392,0.000003524267,0.00007948015],"genre_scores_gemma":[0.996233,0.00009362237,0.0032311324,0.00016181041,0.00016374535,2.3699621e-7,0.00006672849,0.000011969552,0.000037743717],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987377,0.00009710143,0.0005639499,0.00024351254,0.00007908475,0.00027867293],"domain_scores_gemma":[0.99902254,0.000017495786,0.00042299443,0.00021281149,0.00026530633,0.000058822385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000991023,0.00021872125,0.00047732177,0.0001958925,0.00003777427,0.000012863399,0.00035346876,0.00040866336,0.00007002706],"category_scores_gemma":[0.000045167675,0.00015262335,0.0000886636,0.00030740286,0.00033744704,0.0000056132158,0.00013359095,0.00030847595,3.9887482e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009822942,0.000022459293,0.026910925,0.000035232457,0.00013077744,0.00001033396,0.000015721303,0.00007282217,0.97004163,0.00019887758,0.00014547369,0.0014334614],"study_design_scores_gemma":[0.0016807882,0.0027846755,0.12336346,0.00006105575,0.000048037637,0.00015555242,0.00008859272,0.00003904632,0.8684962,0.000604743,0.0024640795,0.00021381144],"about_ca_topic_score_codex":0.000042800046,"about_ca_topic_score_gemma":0.00016236013,"teacher_disagreement_score":0.10154546,"about_ca_system_score_codex":0.000023717634,"about_ca_system_score_gemma":0.0002173105,"threshold_uncertainty_score":0.62237996},"labels":[],"label_agreement":null},{"id":"W4416168641","doi":"10.1128/mbio.02227-25","title":"Bacteria export alarmone synthetases that produce (p)ppApp and (p)ppGpp","year":2025,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre; McMaster University; University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Enzyme; Extracellular; Bacteria; Secretion; Guanosine; Intracellular; Cytoplasm; Adenosine","score_opus":0.008222200918201012,"score_gpt":0.22368567681578105,"score_spread":0.21546347589758005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416168641","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995587,0.0015909912,0.00016618364,0.0011182968,0.0003635111,0.00019302889,0.000032048298,0.000031230804,0.0009176889],"genre_scores_gemma":[0.9957717,0.0008042344,0.00071651425,0.00038790485,0.00010647711,0.000024161625,0.000076842356,0.000014232213,0.0020979499],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990932,0.000027416747,0.00014997918,0.00044608756,0.00005280709,0.0002305111],"domain_scores_gemma":[0.99942976,0.000005212337,0.000050622562,0.000431358,0.000036134825,0.000046938796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011290604,0.00016293467,0.00016184011,0.000051758136,0.0000741733,0.00003986422,0.00016841636,0.00026466808,0.000029195264],"category_scores_gemma":[0.00003780429,0.0001475439,0.00004643226,0.00007953934,0.00014359331,0.000002249598,0.0001910574,0.00007453144,0.000008006833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005370941,0.000047385525,0.0023794756,0.00002065178,0.000050489616,0.0000029735709,0.0000068665327,1.013149e-7,0.9838271,0.00014496486,0.0037306247,0.009735614],"study_design_scores_gemma":[0.00022860355,0.00011693531,0.01042008,0.00001401836,0.000021236592,0.000014040009,0.00002095357,0.000002390612,0.7852806,0.00008572437,0.2036547,0.0001407393],"about_ca_topic_score_codex":0.000014578196,"about_ca_topic_score_gemma":0.00002032448,"teacher_disagreement_score":0.19992408,"about_ca_system_score_codex":0.0000061238775,"about_ca_system_score_gemma":0.000047197547,"threshold_uncertainty_score":0.60166657},"labels":[],"label_agreement":null},{"id":"W4416203568","doi":"10.1093/g3journal/jkaf225","title":"Nearly a century of discoveries in bacterial genetics and their continuing impact on the field","year":2025,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Field (mathematics); Human genetics; Bacterial virus; Microbial genetics; Population genetics","score_opus":0.00451847315937055,"score_gpt":0.23129287196612722,"score_spread":0.22677439880675668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416203568","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8816329,0.11684623,0.00011471947,0.00048006815,0.00034051953,0.00031853025,0.00007949356,0.0000069438547,0.00018058233],"genre_scores_gemma":[0.9018714,0.09724389,0.00027882625,0.00029008617,0.00015708052,0.000017796378,0.00003612362,0.000021292228,0.00008349802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986739,0.00009341141,0.00038545186,0.0004062633,0.00008195258,0.0003589965],"domain_scores_gemma":[0.99906284,0.000078551886,0.00013109655,0.00061161944,0.00006742493,0.000048479826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017539965,0.00029744042,0.00031403865,0.00011561921,0.000063719395,0.000062420746,0.00038668013,0.0003405365,0.000024772826],"category_scores_gemma":[0.00002235854,0.00019936902,0.00012335733,0.00019925024,0.00023349565,0.0000024458514,0.00040087398,0.00013990302,0.0000011403532],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002080779,0.000041619667,0.008083208,0.000019752442,0.000074224554,7.909088e-7,0.00014192236,0.00007913642,0.6767708,0.000127046,0.00012330138,0.31433013],"study_design_scores_gemma":[0.0006175995,0.0009641793,0.0126789855,0.000042803156,0.000025190498,0.0000049381397,0.00031570956,0.00010036941,0.84465504,0.00030984543,0.14001468,0.00027066894],"about_ca_topic_score_codex":0.000024903478,"about_ca_topic_score_gemma":0.00009921566,"teacher_disagreement_score":0.31405947,"about_ca_system_score_codex":0.000015298092,"about_ca_system_score_gemma":0.000099851815,"threshold_uncertainty_score":0.8130033},"labels":[],"label_agreement":null},{"id":"W4416385039","doi":"10.1073/pnas.2513479122","title":"Glyceraldehyde-3-phosphate dehydrogenase homologs as bifunctional gatekeepers of metabolic segregation in <i> <i>Pseudomonas</i> putida </i>","year":2025,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Science North","funders":"U.S. Department of Energy","keywords":"Citric acid cycle; Glycolysis; Metabolomics; Metabolic pathway; Mutant; Dehydrogenase; Flux (metallurgy); Metabolism; Catabolism","score_opus":0.011054782917589212,"score_gpt":0.26351617132017674,"score_spread":0.2524613884025875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416385039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99498266,0.0008235538,0.00000210553,0.0019834468,0.000047978585,0.00015997984,0.000020108979,0.0000034717145,0.001976693],"genre_scores_gemma":[0.99809206,0.00041110153,0.000743894,0.00048461524,0.000029122682,0.000011881292,0.0000014874183,0.0000032523303,0.00022261837],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988459,0.00000953087,0.00037141377,0.00027401178,0.00035113518,0.00014800609],"domain_scores_gemma":[0.99940675,0.000019195313,0.00031548316,0.00001670331,0.0002225134,0.00001937087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061149045,0.000103653205,0.0001725636,0.0001868822,0.00007105013,0.0000087984945,0.0005457364,0.00021575886,0.00000659367],"category_scores_gemma":[0.00020335276,0.00007839203,0.00008946612,0.0008023787,0.00080046227,0.000015862975,0.0001584766,0.00010798833,5.5575225e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006565411,0.00005241302,0.005092271,0.000026295313,0.00002480267,6.1371948e-9,0.000013086539,0.00010423811,0.94941396,0.044565305,0.00018548097,0.0004564933],"study_design_scores_gemma":[0.0003335964,0.000079377874,0.014128329,0.00003722404,0.000013479781,0.0000061021074,0.000033268792,0.000104665596,0.9610419,0.022587571,0.0015656406,0.00006882489],"about_ca_topic_score_codex":0.000025011856,"about_ca_topic_score_gemma":8.54406e-7,"teacher_disagreement_score":0.021977732,"about_ca_system_score_codex":0.0000093633425,"about_ca_system_score_gemma":0.0000884613,"threshold_uncertainty_score":0.31967345},"labels":[],"label_agreement":null},{"id":"W4416394529","doi":"10.1093/g3journal/jkaf279","title":"Copy number and sequence variation in ribosomal DNA and the transposon, <i>Pokey</i> , in mutation accumulation lines of <i>Daphnia obtusa</i>","year":2025,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Alliance de recherche numérique du Canada; Ministère de l’Enseignement Supérieur, de la Recherche Scientifique et des Technologies de l'Information et de la Communication; Ministry of Higher Education and Scientific Research","keywords":"Ribosomal DNA; Ribosomal RNA; Transposable element; Copy-number variation; Concerted evolution; Tandem repeat; 28S ribosomal RNA; Repeated sequence; Gene","score_opus":0.011183423422218034,"score_gpt":0.26644880526674736,"score_spread":0.25526538184452935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416394529","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9500951,0.048053794,0.0007538567,0.0004450706,0.0001435699,0.00038917284,0.000028006009,0.0000060680622,0.0000853153],"genre_scores_gemma":[0.9374343,0.060559906,0.0016469153,0.00016069769,0.000060039467,0.000027204522,0.00006210057,0.0000119281185,0.000036913792],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885255,0.00011228489,0.00041717678,0.00034445696,0.00007981348,0.00019369533],"domain_scores_gemma":[0.9994946,0.00003511335,0.00012073141,0.00024443958,0.00008000012,0.000025113672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027157244,0.00016700904,0.00022629263,0.000092924725,0.000045248362,0.000025017236,0.00014794583,0.0002914356,0.000002976851],"category_scores_gemma":[0.000012869355,0.0001449076,0.00003522638,0.0002700935,0.00024307001,0.00000514931,0.00009748592,0.000083148225,5.471187e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022221525,0.00003201999,0.058538556,0.00005748967,0.000025103402,0.0000011974817,0.00023844615,0.0006328483,0.8286782,0.00044522827,0.0000052422934,0.11112348],"study_design_scores_gemma":[0.004835649,0.00021487624,0.11459738,0.00005759319,0.000081903876,0.000023847027,0.00014807226,0.0030972818,0.8606535,0.003598618,0.012309026,0.00038225323],"about_ca_topic_score_codex":0.00007644835,"about_ca_topic_score_gemma":0.0004601765,"teacher_disagreement_score":0.11074123,"about_ca_system_score_codex":0.000012147135,"about_ca_system_score_gemma":0.00007420347,"threshold_uncertainty_score":0.59091604},"labels":[],"label_agreement":null},{"id":"W4416420593","doi":"10.1016/j.isci.2025.114123","title":"Metabolic silencing induced by the small bacterial membrane protein YohP","year":2025,"lang":"en","type":"article","venue":"iScience","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"H2020 European Research Council; European Research Council; Deutsche Forschungsgemeinschaft; Horizon 2020 Framework Programme; Max-Planck-Gesellschaft; Johannes Gutenberg-Universität Mainz","keywords":"Proteomics; Cardiolipin; Proteome; Membrane protein; Function (biology); Lipidomics; Membrane; Gene silencing","score_opus":0.01046073115490304,"score_gpt":0.22965288896196634,"score_spread":0.2191921578070633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416420593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99598557,0.00073281943,0.00030620254,0.0014128591,0.00046065118,0.00026237383,0.000012327821,0.000016262597,0.0008109415],"genre_scores_gemma":[0.9979055,0.000071012415,0.00031851098,0.0004101761,0.00012842275,0.00003709937,0.000015857411,0.0000064427054,0.0011069914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990738,0.00005060864,0.00015723721,0.00036412413,0.00008199826,0.00027224427],"domain_scores_gemma":[0.9994398,0.0000061382725,0.000056894864,0.0004157776,0.000046167766,0.00003526993],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025266822,0.00012380444,0.0001117436,0.00003478623,0.00016794584,0.000067595625,0.0006064846,0.00018475958,0.000017763552],"category_scores_gemma":[0.00009255828,0.00008523976,0.00004610744,0.00021882005,0.00019626379,0.0000026368546,0.0002872789,0.000106052576,0.000010811335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018055027,0.000017737224,0.00001523492,0.0000036701372,0.000009313054,2.53058e-7,0.000013533671,8.9793343e-7,0.9884721,0.00042303352,0.00025090945,0.010775286],"study_design_scores_gemma":[0.0001787661,0.00007872108,0.00040513292,0.000007127304,0.000007882008,0.000002651003,0.000027429558,0.000014111484,0.91658115,0.000078889694,0.0825177,0.00010043721],"about_ca_topic_score_codex":0.000062675404,"about_ca_topic_score_gemma":0.00006544088,"teacher_disagreement_score":0.08226679,"about_ca_system_score_codex":0.000005950142,"about_ca_system_score_gemma":0.0001288538,"threshold_uncertainty_score":0.34759763},"labels":[],"label_agreement":null},{"id":"W4416676490","doi":"10.1002/ange.202516608","title":"The Histidine Kinase VraS Interacts with Vancomycin and Penicillins Through its Membrane‐Anchored N‐terminal Domain","year":2025,"lang":"de","type":"article","venue":"Angewandte Chemie","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Agencia Santafesina de Ciencia, Tecnología e Innovación; Consejo Nacional de Investigaciones Científicas y Técnicas; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Histidine; Histidine kinase; Penicillin binding proteins; Extracellular; Mutant; Protein kinase domain; Kinase; Cell membrane; Vancomycin","score_opus":0.008087946358960204,"score_gpt":0.23721080194524907,"score_spread":0.22912285558628886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416676490","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9285473,0.060215767,0.000105348925,0.0057121296,0.001214258,0.0006435309,0.0001330644,0.000029615865,0.0033989851],"genre_scores_gemma":[0.9640063,0.029696291,0.0007557477,0.0007496327,0.00075887603,0.000071170565,0.00022113766,0.0000457512,0.0036950884],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979024,0.00006735744,0.00043851405,0.00080367154,0.00015268293,0.00063538714],"domain_scores_gemma":[0.998646,0.0000694857,0.00021462252,0.000768683,0.00018009498,0.00012107183],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000206906,0.0005003615,0.00043627285,0.00005008852,0.00038699736,0.00016141226,0.00050163275,0.0006107855,0.000033063756],"category_scores_gemma":[0.000104078026,0.00035415983,0.00012088143,0.00024004953,0.00057011266,0.000010544376,0.0004922305,0.00038853724,0.000013379233],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009450718,0.00016383486,0.000073881565,0.00021138023,0.00041411526,0.00006268794,0.00011683746,9.68055e-7,0.9898517,0.00044510548,0.005469055,0.0022453368],"study_design_scores_gemma":[0.0011342319,0.00035749172,0.00006918718,0.00014074186,0.0001280019,0.000025438167,0.00011263257,0.0000029601924,0.5730216,0.0001591163,0.42459574,0.00025285536],"about_ca_topic_score_codex":0.00002995632,"about_ca_topic_score_gemma":0.00024377329,"teacher_disagreement_score":0.4191267,"about_ca_system_score_codex":0.000054096556,"about_ca_system_score_gemma":0.00022326765,"threshold_uncertainty_score":0.99989104},"labels":[],"label_agreement":null},{"id":"W4416759365","doi":"10.1038/s42004-025-01795-6","title":"Fragment-based drug design of a bacterial kinase inhibitor capable of increasing the antibiotic sensitivity of clinical isolates","year":2025,"lang":"en","type":"article","venue":"Communications Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Bundesministerium für Bildung und Forschung; Agence Nationale de la Recherche; Association Vaincre la Mucoviscidose; French Infrastructure for Integrated Structural Biology; Mitacs; Government of Canada","keywords":"Pseudomonas aeruginosa; Antibiotics; Staphylococcus aureus; Antibiotic resistance; Aminoglycoside; Drug resistance; Drug; Antimicrobial","score_opus":0.021226481560537084,"score_gpt":0.29326797178006786,"score_spread":0.2720414902195308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416759365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970426,0.00073528726,0.0012399072,0.00045428012,0.00007181854,0.00015989401,0.000058258385,0.000006270326,0.00023168973],"genre_scores_gemma":[0.9933565,0.00035983228,0.006050756,0.00002816385,0.000036691195,0.0000042037364,0.00011560804,0.000008113558,0.000040102357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987183,0.00037587402,0.0005650844,0.00017539297,0.0000522095,0.00011314093],"domain_scores_gemma":[0.99752927,0.0002939094,0.0003529499,0.0015933262,0.00020635316,0.000024210449],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009928043,0.0001096891,0.00027668246,0.000023627546,0.000068632486,0.0000067807186,0.0005464429,0.000256862,0.000008287315],"category_scores_gemma":[0.00063416717,0.000094033174,0.00011678423,0.00015247917,0.00077465706,0.0000018774028,0.0004707203,0.0001528524,2.5518528e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018157797,0.00028164766,0.0016728299,0.00009762017,0.000067458575,1.1452186e-7,0.0000111755735,0.000042508123,0.99613315,0.000018823574,0.00018269524,0.0013104277],"study_design_scores_gemma":[0.0004628221,0.000047173697,0.000993779,0.000102022685,0.000053956217,0.0000015258249,0.000068444555,0.0008587858,0.99604,0.000025304962,0.0012702423,0.000075982534],"about_ca_topic_score_codex":0.00009321091,"about_ca_topic_score_gemma":0.000016004205,"teacher_disagreement_score":0.004810849,"about_ca_system_score_codex":0.0000067867654,"about_ca_system_score_gemma":0.00027550675,"threshold_uncertainty_score":0.38345617},"labels":[],"label_agreement":null},{"id":"W4416998133","doi":"10.1038/s42004-025-01794-7","title":"Targeting bacterial kinases as a strategy to counteract antibiotic resistance","year":2025,"lang":"en","type":"article","venue":"Communications Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium","funders":"Association Vaincre la Mucoviscidose; French Infrastructure for Integrated Structural Biology; Mitacs; Bundesministerium für Bildung und Forschung; Agence Nationale de la Recherche; Association Nationale de la Recherche et de la Technologie; Deutsches Zentrum für Infektionsforschung","keywords":"ADME; Kinase; Antibiotics; Aminoglycoside; Antibiotic resistance; Drug resistance; Kinome","score_opus":0.010463665160495893,"score_gpt":0.2833726516434364,"score_spread":0.2729089864829405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416998133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97595686,0.0016972652,0.00012630124,0.0018287875,0.00014346835,0.00019331397,0.000056717905,0.000041590167,0.019955704],"genre_scores_gemma":[0.99224406,0.00071310275,0.0019265164,0.00030388485,0.00010922201,0.000024842846,0.00050938805,0.000015551681,0.0041534402],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908966,0.000038730283,0.00026064675,0.00032722583,0.000058635396,0.00022513219],"domain_scores_gemma":[0.9980724,0.000021480151,0.000077892146,0.0016320447,0.00013492072,0.00006129098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010732187,0.0001591998,0.00014674525,0.000031762524,0.00018922832,0.00007214194,0.0010402928,0.00024732368,0.000054320742],"category_scores_gemma":[0.00023909067,0.00017401174,0.000056040946,0.00020392545,0.00015448705,0.0000030611616,0.0007084718,0.00015085391,0.00002276385],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006573791,0.00007521543,0.00010941305,0.00003293542,0.0000338753,7.423851e-7,0.000007786753,0.000007112121,0.9925354,0.0001793631,0.0057711513,0.0011812795],"study_design_scores_gemma":[0.00018926749,0.00003791199,0.00024908705,0.00005145146,0.0000134288875,0.000002922794,0.0000694028,0.00000977063,0.71698284,0.00008603277,0.2821554,0.00015247488],"about_ca_topic_score_codex":0.000015795034,"about_ca_topic_score_gemma":0.00003348404,"teacher_disagreement_score":0.27638423,"about_ca_system_score_codex":0.000028061908,"about_ca_system_score_gemma":0.00017627653,"threshold_uncertainty_score":0.7095993},"labels":[],"label_agreement":null},{"id":"W4417287106","doi":"10.1146/annurev-biophys-021424-010232","title":"Size Matters: A Biophysical Perspective on Biomolecular Condensates in Bacteria","year":2025,"lang":"en","type":"review","venue":"Annual Review of Biophysics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Bacteria; Nucleation; Compartment (ship); Synthetic biology; Perspective (graphical); Bacterial cell structure","score_opus":0.00889459753489639,"score_gpt":0.3128542133455821,"score_spread":0.3039596158106857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417287106","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00018081706,0.99693817,0.0000051183083,0.0004097924,0.00026922702,0.0010227006,0.0008833346,0.000013153976,0.0002776967],"genre_scores_gemma":[0.00009993872,0.9973763,0.00018657715,0.0013309681,0.00022601914,0.00010047471,0.0004568983,0.000053289707,0.00016953924],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974846,0.00024664603,0.0008392376,0.00086773466,0.00018134716,0.00038038622],"domain_scores_gemma":[0.9981842,0.00008749913,0.0005012235,0.0009247111,0.00023527729,0.00006706251],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00017602269,0.0006460625,0.0021372768,0.00014391354,0.000027269849,0.000016975808,0.0006550862,0.00067749334,0.000023097027],"category_scores_gemma":[0.0002706531,0.0005320833,0.00086361705,0.00067168096,0.00025617707,0.0000038124256,0.0003797981,0.00033325577,0.000042359956],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008640333,0.00095248054,4.6932658e-7,0.20364472,0.00084058155,0.00004727627,0.000038452083,1.1753998e-7,0.12269211,0.0027169245,0.007306103,0.6616744],"study_design_scores_gemma":[0.00022786528,0.0006520156,0.000002639101,0.085845985,0.00042254198,0.000008819319,0.000026892276,1.1865267e-7,0.011233551,0.00011902713,0.90089583,0.000564707],"about_ca_topic_score_codex":0.00002554869,"about_ca_topic_score_gemma":0.000002738307,"teacher_disagreement_score":0.89358974,"about_ca_system_score_codex":0.00006603458,"about_ca_system_score_gemma":0.00039897993,"threshold_uncertainty_score":0.99971306},"labels":[],"label_agreement":null},{"id":"W4417298624","doi":"10.1038/s42003-025-09145-x","title":"Structural dependence of ProQ-mRNA interactions in live bacterial cells","year":2025,"lang":"en","type":"article","venue":"Communications Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université de Sherbrooke","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Messenger RNA; Bacteria; Regulator; Exponential growth; Residue (chemistry); Transfer RNA; RNA; Regulation of gene expression","score_opus":0.01926683003013725,"score_gpt":0.30537830717920916,"score_spread":0.2861114771490719,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417298624","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99690145,0.0006455618,0.00011850876,0.00073667,0.00041652157,0.00019906051,0.000040054834,0.000014670398,0.00092749944],"genre_scores_gemma":[0.9956141,0.00079256186,0.0031497248,0.00006789806,0.0000325355,0.000034940986,0.00017978011,0.0000074667355,0.0001210033],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999194,0.00013643381,0.0002975479,0.00020494257,0.000017923276,0.00014912806],"domain_scores_gemma":[0.9987258,0.000035409812,0.00010491069,0.0010285965,0.00008718487,0.000018109851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009510843,0.00009851334,0.00015500448,0.000119625656,0.000049339385,0.0000074193936,0.0007913983,0.00019471116,0.000023571729],"category_scores_gemma":[0.00007481102,0.00009477085,0.000048671172,0.0001607979,0.00034466852,0.000002633931,0.0006987358,0.00015867117,0.000003897501],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046739202,0.000047899986,0.004638879,0.0000062284553,0.00002637175,9.9419076e-8,0.000025552761,0.0000034840346,0.988119,0.002438594,0.00010174775,0.0045453757],"study_design_scores_gemma":[0.0006000943,0.00021060153,0.011064294,0.00003237416,0.000018739282,0.000006796881,0.00013131023,0.00021098828,0.92015016,0.001781698,0.06561221,0.00018074758],"about_ca_topic_score_codex":0.00012714128,"about_ca_topic_score_gemma":0.0014692395,"teacher_disagreement_score":0.06796888,"about_ca_system_score_codex":0.000015208701,"about_ca_system_score_gemma":0.000097293414,"threshold_uncertainty_score":0.38646427},"labels":[],"label_agreement":null},{"id":"W4417304491","doi":"10.1038/s41598-025-32144-1","title":"Data-driven analysis reveals distinct genomic and environmental contributions to bacterial growth curves","year":2025,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Genome; Bacterial growth; Bacterial genome size; Growth curve (statistics); Population; Bacterial genetics; Genome size; Genomics; Evolutionary dynamics","score_opus":0.007066753461076723,"score_gpt":0.25001559733624906,"score_spread":0.24294884387517235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417304491","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99528885,0.00058409537,0.0007297353,0.00064545264,0.0014160569,0.00026272592,0.0009674156,0.000012163301,0.000093500195],"genre_scores_gemma":[0.9917287,0.0001348453,0.00033714983,0.000109112705,0.00008528608,0.000013559676,0.006501487,0.0000057413104,0.0010840662],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99845165,0.000041033058,0.00032241232,0.00087281736,0.000094807125,0.00021728907],"domain_scores_gemma":[0.9986339,0.000005766514,0.000112435766,0.0011139943,0.00004522789,0.00008866685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004699796,0.00012148132,0.00019829626,0.0001369193,0.00019402332,0.000110385845,0.00025411652,0.000123412,0.000042803225],"category_scores_gemma":[0.00018581937,0.00011360814,0.00006049506,0.00031100248,0.00023748794,0.0000042501556,0.0008089752,0.00004869979,0.0000036643564],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012473272,0.000031588042,0.012000921,0.000010278265,0.0001624063,0.000008962901,0.0000031640582,0.0000027488998,0.9727415,0.000019186124,0.014703212,0.0003035818],"study_design_scores_gemma":[0.00035522648,0.00014244621,0.16828795,0.000047251215,0.00088165415,0.00007460636,0.000027872476,0.00010227492,0.3935127,0.00094458234,0.43511903,0.0005044239],"about_ca_topic_score_codex":0.000015727726,"about_ca_topic_score_gemma":0.000111005786,"teacher_disagreement_score":0.57922876,"about_ca_system_score_codex":0.000019907438,"about_ca_system_score_gemma":0.00007353626,"threshold_uncertainty_score":0.46328056},"labels":[],"label_agreement":null},{"id":"W4417414438","doi":"10.1038/s41467-025-66095-y","title":"Peptidoglycan recruitment by a penicillin binding protein","year":2025,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"National Institute of Allergy and Infectious Diseases; U.S. Department of Health and Human Services","keywords":"Penicillin binding proteins; Peptidoglycan; Peptide; Cell wall; Antibiotics; Plasma protein binding; Binding site; Residue (chemistry); Peptidyl transferase","score_opus":0.02143768297533558,"score_gpt":0.3095042685460574,"score_spread":0.2880665855707218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417414438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9575305,0.013107132,0.00022578258,0.018711532,0.00027980082,0.001197188,0.00013727807,0.00006193772,0.008748863],"genre_scores_gemma":[0.98797816,0.0012291584,0.0046434263,0.00044273885,0.000030992454,0.00022072524,0.00057185924,0.000011165716,0.0048717796],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993289,0.00007019491,0.00016189796,0.00022496727,0.000052972075,0.00016107771],"domain_scores_gemma":[0.9984261,0.000010229152,0.000059538754,0.0013979173,0.00007495858,0.000031301905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012339703,0.0001116133,0.00009768858,0.00006097663,0.00018035574,0.00002712652,0.0008855767,0.0005542883,0.000009182795],"category_scores_gemma":[0.0000800163,0.00010768976,0.000055952598,0.0002002753,0.00012129205,0.0000014131987,0.00056952465,0.00040763157,0.000009209514],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013737546,0.00007156869,0.00014813633,0.0000037990671,0.000037068785,9.020126e-8,0.0000049780856,1.8882557e-7,0.973974,0.0034617719,0.018477611,0.0038070872],"study_design_scores_gemma":[0.0001574204,0.000049825383,0.00008006211,0.000012774473,0.000009124023,9.41538e-7,0.00001936167,0.0000074523728,0.39915228,0.00007362688,0.600359,0.0000781038],"about_ca_topic_score_codex":0.000009540904,"about_ca_topic_score_gemma":0.00018883565,"teacher_disagreement_score":0.5818814,"about_ca_system_score_codex":0.000025128056,"about_ca_system_score_gemma":0.00007789168,"threshold_uncertainty_score":0.4391461},"labels":[],"label_agreement":null},{"id":"W4417478437","doi":"10.5376/bt.2025.16.0030","title":"The Role of Plasmids in the Metabolic Diversity of Bt","year":2025,"lang":"","type":"article","venue":"Bt Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Plasmid; Gene; Diversity (politics); Genome; DNA; DNA Transposable Elements","score_opus":0.021603374900929926,"score_gpt":0.3227113275731226,"score_spread":0.30110795267219265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417478437","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9657898,0.02551635,0.0000061377355,0.0021223596,0.00015556042,0.00044279709,0.000047630932,0.000001440372,0.0059179086],"genre_scores_gemma":[0.9784082,0.020490803,0.000025507226,0.000028423054,0.00006427561,0.000014831315,0.000008979232,0.0000060779803,0.0009528805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976304,0.0007058877,0.00038389364,0.000343568,0.0004094974,0.00052675686],"domain_scores_gemma":[0.99840957,0.00019484498,0.000094846684,0.0009086065,0.000359198,0.00003295349],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002645265,0.00013834832,0.00025244136,0.00018007864,0.00039215648,0.000033462835,0.0016868701,0.00048228606,0.000016449154],"category_scores_gemma":[0.00037337904,0.00008718097,0.00013454787,0.00073125894,0.0010160458,0.0000019181673,0.0025761307,0.0005172063,0.0000033505246],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046214764,0.00026399424,0.014667929,0.00004830262,0.00015624847,0.0000016712013,0.00022528379,0.000003502845,0.8886225,0.030535014,0.00040530736,0.06460806],"study_design_scores_gemma":[0.00038663877,0.00028462312,0.014245042,0.000021956996,0.000019592051,0.0000011101428,0.0014315972,0.00002570165,0.65775174,0.00287395,0.32289338,0.00006465309],"about_ca_topic_score_codex":0.00065560074,"about_ca_topic_score_gemma":0.0005680097,"teacher_disagreement_score":0.3224881,"about_ca_system_score_codex":0.000013881026,"about_ca_system_score_gemma":0.00037717907,"threshold_uncertainty_score":0.3743663},"labels":[],"label_agreement":null},{"id":"W59098144","doi":"10.1007/978-1-60761-157-8_22","title":"Sequential Peptide Affinity Purification System for the Systematic Isolation and Identification of Protein Complexes from Escherichia coli","year":2009,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Escherichia coli; Protein tag; Tandem affinity purification; Proteome; Tobacco etch virus; FLAG-tag; Biology; Protein purification; Intein; Peptide; Fusion protein; Computational biology; Affinity chromatography; Biochemistry; Molecular biology; Recombinant DNA; Gene; Genetics; Enzyme; RNA splicing; Virus","score_opus":0.021307109363979972,"score_gpt":0.32715232847881554,"score_spread":0.3058452191148356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W59098144","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.46816146,0.00093385397,0.5297717,0.00014763941,0.00008860925,0.0008541879,0.00002706732,0.000007945583,0.000007565833],"genre_scores_gemma":[0.7912342,0.00003989298,0.20837358,0.00003783069,0.00004532648,0.00014382425,0.00010594123,0.00000921559,0.000010205967],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982084,0.00069592235,0.0005421412,0.00034851802,0.000046418496,0.0001586016],"domain_scores_gemma":[0.999027,0.000071107985,0.0003564954,0.0004234309,0.00009998543,0.000021971131],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00114326,0.00014022259,0.00028910497,0.000061228384,0.00006206145,0.000020628784,0.00023295837,0.00033353354,9.751765e-7],"category_scores_gemma":[0.00035716017,0.000110581204,0.00006942005,0.00011559771,0.0001328903,0.0000025135876,0.00005623237,0.00008119449,3.7817847e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007539723,0.00002820347,0.000055031953,0.00026635997,0.000040949828,1.746661e-7,0.00002472471,0.0000206487,0.99409425,0.0041712825,0.0000017491689,0.0012212492],"study_design_scores_gemma":[0.00035066507,0.0002638314,0.0016195768,0.000079802034,0.000057117442,0.0000021085364,0.000088740315,0.0015325905,0.99344885,0.002316061,0.00012393635,0.000116690615],"about_ca_topic_score_codex":0.000041869356,"about_ca_topic_score_gemma":0.000014198262,"teacher_disagreement_score":0.32307273,"about_ca_system_score_codex":0.000016493723,"about_ca_system_score_gemma":0.000028923443,"threshold_uncertainty_score":0.45093706},"labels":[],"label_agreement":null},{"id":"W609430750","doi":"10.1016/j.compbiolchem.2015.06.002","title":"The functional landscape bound to the transcription factors of Escherichia coli K-12","year":2015,"lang":"en","type":"article","venue":"Computational Biology and Chemistry","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University","funders":"Consejo Nacional de Ciencia y Tecnología","keywords":"Regulon; Gene; Escherichia coli; Biology; DNA; Genetics; Transcription (linguistics); Transcription factor; Computational biology; DNA-binding domain; DNA sequencing; Transcriptional regulation","score_opus":0.014630749189373855,"score_gpt":0.22997667172208358,"score_spread":0.21534592253270973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W609430750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963569,0.00078612566,0.0010201836,0.0012557157,0.00019872392,0.00007010092,0.000035769594,0.000005849293,0.0002706151],"genre_scores_gemma":[0.9989768,0.000052500644,0.00013285776,0.00015332867,0.00017760316,0.000009403239,0.00028089702,0.000004876358,0.00021172993],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994928,0.000028370005,0.00013760061,0.00017063916,0.000054746175,0.000115807416],"domain_scores_gemma":[0.9996458,0.00002866404,0.000053292988,0.0001197208,0.000095872485,0.000056625442],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013742557,0.000089623296,0.000078319135,0.0000073475157,0.00012846527,0.000014193655,0.00013303079,0.00018543351,0.000009329653],"category_scores_gemma":[0.000054872813,0.00005404222,0.00003466408,0.000047070276,0.00022234993,0.0000012328777,0.0000650325,0.000077587276,0.0000017890959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014618582,0.000023296556,0.0048731226,0.000005494095,0.00005192162,1.0356271e-7,0.000037509573,0.00037209844,0.9905896,0.0004035728,0.0027566631,0.00074042],"study_design_scores_gemma":[0.0011126471,0.00053863204,0.07048026,0.000007725407,0.00004075138,0.000026252095,0.00061379926,0.0004217419,0.685468,0.0052695097,0.23569867,0.0003220063],"about_ca_topic_score_codex":0.0000040072487,"about_ca_topic_score_gemma":0.000009353146,"teacher_disagreement_score":0.3051216,"about_ca_system_score_codex":0.000004322471,"about_ca_system_score_gemma":0.00007677397,"threshold_uncertainty_score":0.22037777},"labels":[],"label_agreement":null},{"id":"W63005881","doi":"10.2144/00293bm06","title":"Rapid Screening of Plasmid DNA by Direct Sequencing from Bacterial Colonies","year":2000,"lang":"en","type":"article","venue":"BioTechniques","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Medical Research Council Canada; Medical Research Council; University of Manitoba","keywords":"Plasmid; Biology; DNA sequencing; Genetics; DNA; Molecular biology","score_opus":0.010575486937933167,"score_gpt":0.21988358156278157,"score_spread":0.2093080946248484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W63005881","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99665445,0.00085803546,0.00020895356,0.00020773344,0.00009998079,0.00019102277,0.00043333083,0.00010078678,0.0012457347],"genre_scores_gemma":[0.9869159,0.0019401632,0.010045486,0.0001262769,0.00025206577,0.000018885388,0.00042100184,0.000030596217,0.0002496614],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888414,0.000064901185,0.0003024727,0.00039588287,0.00009951028,0.0002530992],"domain_scores_gemma":[0.99939644,0.000012277278,0.00011166381,0.00038386372,0.000042041902,0.000053719647],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013022304,0.00020394447,0.00026127556,0.00004510456,0.00006142172,0.000024827032,0.00029084616,0.0006393053,0.00039363583],"category_scores_gemma":[0.000027903146,0.00019600781,0.000098217286,0.000087223365,0.00019595647,0.0000031848344,0.00010304369,0.00010693079,0.0000047731833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020018271,0.000026268079,0.000068645575,0.0000057448665,0.00004611145,0.0000011610138,0.000014000246,7.2160293e-7,0.96429867,0.000007340557,0.0044055246,0.030925624],"study_design_scores_gemma":[0.0001868976,0.0004280267,0.00011463632,0.000022705899,0.000013086807,0.0000029328376,0.000008579978,0.0000075798794,0.76034486,0.000031958094,0.23866214,0.00017659001],"about_ca_topic_score_codex":0.000256433,"about_ca_topic_score_gemma":0.00002652146,"teacher_disagreement_score":0.23425661,"about_ca_system_score_codex":0.000014840967,"about_ca_system_score_gemma":0.000048371876,"threshold_uncertainty_score":0.7992967},"labels":[],"label_agreement":null},{"id":"W637997329","doi":"10.71781/27167","title":"Les R-loops et leurs conséquences sur l'expression génique chez Escherichia coli","year":2009,"lang":"fr","type":"dissertation","venue":"Papyrus : Institutional Repository (Université de Montréal)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"cons; Escherichia coli; Expression (computer science); Molecular biology; Biology; Computer science; Genetics; Programming language","score_opus":0.009906775314010473,"score_gpt":0.19549996587065344,"score_spread":0.18559319055664297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W637997329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95819587,0.027671143,0.00014962605,0.0009088463,0.0011491952,0.00042103694,0.00012514845,0.0000628673,0.011316286],"genre_scores_gemma":[0.9693823,0.0063204225,0.001627305,0.000353722,0.0002780895,0.000024128549,0.0018940754,0.000042834272,0.020077145],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99737024,0.00028877883,0.00048709672,0.000948512,0.00035306322,0.0005523234],"domain_scores_gemma":[0.99826384,0.000034986082,0.00052917236,0.00050386135,0.00038522994,0.00028289168],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00020878139,0.0006284142,0.00049946655,0.00016750893,0.0030488607,0.00008180075,0.0006050313,0.0020242736,0.00005116953],"category_scores_gemma":[0.00008481657,0.00069779885,0.00035407735,0.00022070535,0.00054277905,0.000027267657,0.00024232047,0.0006201641,0.000019596457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007871702,0.00026763554,0.0029593937,0.00010285339,0.00021303633,0.00035951292,0.0018641562,0.0003778498,0.9822384,0.004006559,0.00064153905,0.0061818953],"study_design_scores_gemma":[0.000881308,0.0005271494,0.03255028,0.00027747574,0.00019863977,0.00027278136,0.0039829663,0.00011183384,0.84376323,0.0001496515,0.1165196,0.00076507893],"about_ca_topic_score_codex":0.024722137,"about_ca_topic_score_gemma":0.018225119,"teacher_disagreement_score":0.13847516,"about_ca_system_score_codex":0.0009608456,"about_ca_system_score_gemma":0.0019454077,"threshold_uncertainty_score":0.9996897},"labels":[],"label_agreement":null},{"id":"W6884607833","doi":"10.1101/ps.7201","title":"Modeling of the bacterial luciferase-flavin mononucleotide complex combining flexible docking with structure-activity data","year":2001,"lang":"en","type":"preprint","venue":"NPARC","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Docking (animal); Escherichia coli Proteins; Automation","score_opus":0.04412672675696787,"score_gpt":0.27131859653193763,"score_spread":0.22719186977496975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6884607833","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99424374,0.00005017976,0.0028572406,0.00026439707,0.0006368136,0.00041440123,0.00077239855,0.00002920164,0.0007316269],"genre_scores_gemma":[0.99214333,0.00013640268,0.0060288315,0.000058455065,0.00045414246,0.000008399883,0.0010771642,0.000058321493,0.000034974844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979941,0.00014983243,0.00036797547,0.00089504814,0.00021951109,0.0003734801],"domain_scores_gemma":[0.9970368,0.00001056598,0.00032906272,0.0024370174,0.00012259836,0.0000639167],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021871294,0.00038721727,0.00046974205,0.00005405161,0.00015692842,0.00007904053,0.0016559532,0.00066576566,0.0000849538],"category_scores_gemma":[0.000055600623,0.0002897962,0.0001018398,0.00010591182,0.00022019015,0.000005117111,0.004334077,0.00065427873,7.4735226e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032542186,0.000055039618,0.00041774614,0.000062232764,0.0001475045,0.0000018506605,0.000019409068,0.009662957,0.9869272,0.00004215659,0.00016642384,0.002172026],"study_design_scores_gemma":[0.001400382,0.00035375336,0.0018587144,0.00024045956,0.00019444796,0.00005293488,0.000044027798,0.08616905,0.90159804,0.0017408798,0.0054791193,0.0008681844],"about_ca_topic_score_codex":0.00019158982,"about_ca_topic_score_gemma":0.00032106173,"teacher_disagreement_score":0.08532918,"about_ca_system_score_codex":0.000023010862,"about_ca_system_score_gemma":0.00027122776,"threshold_uncertainty_score":0.9999554},"labels":[],"label_agreement":null},{"id":"W6891639952","doi":"10.48336/e7gs-5173","title":"Prediction of host-pathogen gene expression from dual RNA-seq data during a bacterial infection","year":2024,"lang":"en","type":"article","venue":"Memorial University Research Repository (Memorial University)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Dual (grammatical number); Gene expression; Gene; Host (biology); Expression (computer science); Pathogen; Dual role; Bacteria","score_opus":0.028562785469765452,"score_gpt":0.24236852338200415,"score_spread":0.2138057379122387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6891639952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875916,0.000099523866,0.00029491016,0.000049577506,0.008710359,0.00037851173,0.001413621,0.00009579645,0.0013660941],"genre_scores_gemma":[0.98490316,0.00066764816,0.0004458175,0.0000012955517,0.009654465,4.357134e-7,0.0014236632,0.000033874563,0.0028696286],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971529,0.00058569835,0.00025825773,0.001075635,0.0004815273,0.00044596888],"domain_scores_gemma":[0.9982442,0.000054563996,0.00011300331,0.0010684754,0.00032685284,0.00019290695],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045219008,0.0002426009,0.0002849272,0.0005649448,0.00051589415,0.00010903546,0.0009013953,0.00071873685,0.00005059635],"category_scores_gemma":[0.0001163742,0.00028036512,0.00015330368,0.00069515634,0.00040000485,0.00009220304,0.002070286,0.00046403983,0.000012228226],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030395482,0.000102836675,0.0003246107,0.000048958005,0.00017735545,0.00041300172,0.000069631395,0.000012357015,0.9941106,0.00008171674,0.00132952,0.00028985128],"study_design_scores_gemma":[0.0016331725,0.0005434288,0.0013012324,0.00006978047,0.000098428856,0.00002674759,0.00016371037,0.00008189633,0.8578339,0.000017150183,0.13801023,0.00022028787],"about_ca_topic_score_codex":0.0015282573,"about_ca_topic_score_gemma":0.00015738534,"teacher_disagreement_score":0.1366807,"about_ca_system_score_codex":0.00022719006,"about_ca_system_score_gemma":0.000591029,"threshold_uncertainty_score":0.99996483},"labels":[],"label_agreement":null},{"id":"W6892048333","doi":"10.48550/arxiv.cond-mat/0112125","title":"Dynamic compartmentalization of bacteria: accurate division in E. coli","year":2001,"lang":"en","type":"preprint","venue":"arXiv (Cornell University)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Compartmentalization (fire protection); Cytoplasm; Escherichia coli; Oscillation (cell signaling); Function (biology); Cell division; Division (mathematics); Bacteria; Membrane; Compartment (ship)","score_opus":0.032548952288821945,"score_gpt":0.20068592105076566,"score_spread":0.16813696876194373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6892048333","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99412405,0.00009166483,0.0048824577,0.00002500517,0.00030238985,0.00026091805,0.000081697166,0.000013274193,0.0002185427],"genre_scores_gemma":[0.9971719,0.0016474816,0.00012854258,0.000018776354,0.000021565897,9.3840356e-7,0.00072836585,0.00001729704,0.00026516223],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893224,0.0000709059,0.0002213784,0.00054800854,0.00003205179,0.00019541134],"domain_scores_gemma":[0.99916935,0.000004908275,0.00023182701,0.00048144162,0.00006811131,0.00004436693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000079147714,0.00020261,0.0002624539,0.0001340603,0.000027623153,0.000012714436,0.00036186472,0.0005919764,0.00003328718],"category_scores_gemma":[0.000011999994,0.00023551735,0.000094249284,0.00019176281,0.00011855103,0.000003210894,0.00078594824,0.00016093679,0.0000049870396],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034559675,0.00032824776,0.015282668,0.00011163182,0.00011921415,0.00004757356,0.000025475538,0.045307696,0.9369209,0.0009756041,0.00011004535,0.00042539148],"study_design_scores_gemma":[0.008646404,0.001810386,0.29543132,0.0007434159,0.00040003093,0.000023027113,0.0004169447,0.14677063,0.5171688,0.010904212,0.014507765,0.003177059],"about_ca_topic_score_codex":0.000075844786,"about_ca_topic_score_gemma":0.0003153825,"teacher_disagreement_score":0.41975206,"about_ca_system_score_codex":0.00005280476,"about_ca_system_score_gemma":0.00007003328,"threshold_uncertainty_score":0.9604119},"labels":[],"label_agreement":null},{"id":"W6901849303","doi":"10.60692/pef9r-n8h30","title":"Association Between Severe Nonadherence to Hydroxychloroquine and Systemic Lupus Erythematosus Flares, Damage, and Mortality in 660 Patients From the SLICC Inception Cohort","year":2023,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; University Health Network; University of Toronto; Dalhousie University; University of Manitoba; Toronto Western Hospital; Université Laval; Queen Elizabeth II Health Sciences Centre; University of Calgary; Krembil Foundation","funders":"","keywords":"Hydroxychloroquine; Hazard ratio; Cohort; Prednisone; Rheumatology; Systemic lupus erythematosus; Proportional hazards model; Cohort study; Confidence interval","score_opus":0.013193842692503534,"score_gpt":0.20900915037021411,"score_spread":0.19581530767771058,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901849303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99739146,0.0000032852076,0.000098060715,0.000072297196,0.00019286259,0.0017601578,0.00039174478,0.000037314865,0.000052822747],"genre_scores_gemma":[0.9989875,0.000003109596,0.000022235781,0.000073147414,0.00008652348,0.0003345928,0.00041877868,0.00000738539,0.000066760134],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99896777,0.00007475259,0.0004029606,0.0002048189,0.0001641122,0.00018559783],"domain_scores_gemma":[0.9993766,0.0000085542715,0.00021451512,0.00025835243,0.00008977595,0.000052231313],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037396204,0.00013830264,0.00018080062,0.000074022384,0.0000803051,0.000087358174,0.0001256036,0.00026453024,0.0000020877096],"category_scores_gemma":[0.000041099225,0.00010579043,0.000021372802,0.0001745998,0.00002146504,0.000019807894,0.000199264,0.000073680225,0.00005928947],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023087126,9.820233e-7,0.99747384,0.00005804334,0.0000451369,3.0394148e-7,0.0014456676,0.000012476347,0.0004948398,0.0000021553483,0.00018343785,0.00026002215],"study_design_scores_gemma":[0.0007609065,0.00006751107,0.99611586,0.0000740561,0.000024679575,0.0000059165777,0.001072266,0.00014710582,0.0011681827,0.0000022436843,0.0004236616,0.0001376272],"about_ca_topic_score_codex":0.00009533491,"about_ca_topic_score_gemma":0.000016141335,"teacher_disagreement_score":0.0015960125,"about_ca_system_score_codex":0.00005234659,"about_ca_system_score_gemma":0.000017137714,"threshold_uncertainty_score":0.43140087},"labels":[],"label_agreement":null},{"id":"W6901966158","doi":"10.6084/m9.figshare.12144363","title":"Additional file 1 of Operon-based approach for the inference of rRNA and tRNA evolutionary histories in bacteria","year":2020,"lang":"en","type":"article","venue":"Open MIND","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Inference; Transfer RNA; Ribosomal RNA; Bacteria","score_opus":0.027883736552973194,"score_gpt":0.24775975407043818,"score_spread":0.219876017517465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901966158","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3261058,0.0006737642,0.0021191742,0.0017840082,0.00011651752,0.0016949244,0.6652204,0.0000017061326,0.0022837005],"genre_scores_gemma":[0.9107256,0.000017970024,0.06397557,0.00006730288,0.00006014435,0.00016199349,0.024830855,0.000007696884,0.00015287672],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99959457,0.000014708496,0.00013438668,0.00015709271,0.000032599626,0.000066625216],"domain_scores_gemma":[0.99967957,0.00007536634,0.000075041615,0.000106975574,0.00004396557,0.000019063613],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003612863,0.0000580144,0.00010362382,0.000011171052,0.000021748236,0.000007510107,0.00021146853,0.00009605261,0.023943722],"category_scores_gemma":[0.0002039979,0.00004510651,0.000022590528,0.000045433957,0.00014309844,0.0000022279862,0.00013184438,0.000032850166,7.112059e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048066027,0.000112991525,0.000117249394,0.000036502395,0.000037456644,2.6648814e-7,0.00007747616,0.00007326434,0.82075953,0.000024991832,0.15487213,0.023407472],"study_design_scores_gemma":[0.0004741622,0.0004885877,0.002293959,0.000016574142,0.0000089724335,0.0000010783644,0.00008890911,0.0015262634,0.11785821,0.000011010862,0.8771351,0.00009716921],"about_ca_topic_score_codex":0.000009037888,"about_ca_topic_score_gemma":0.000011456387,"teacher_disagreement_score":0.722263,"about_ca_system_score_codex":0.0000039221773,"about_ca_system_score_gemma":0.00013127718,"threshold_uncertainty_score":0.9769485},"labels":[],"label_agreement":null},{"id":"W6902156507","doi":"10.6084/m9.figshare.29662660","title":"Additional file 2 of The environmental adaptation of acidophilic archaea: promotion of horizontal gene transfer by genomic islands","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Horizontal gene transfer; Adaptation (eye); Gene transfer; Promotion (chess); Gene; Biodiversity","score_opus":0.0073054775353415145,"score_gpt":0.18381717303934852,"score_spread":0.176511695504007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902156507","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015060274,0.00016017354,5.327692e-7,0.000008484955,0.000038596892,0.00023526138,0.99803966,0.00000145568,0.0000098174],"genre_scores_gemma":[0.0036851175,0.00006154259,0.000032548392,0.000011146415,0.00008328002,0.00017881481,0.9958558,0.0000073591877,0.00008439719],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99923176,0.000036355454,0.00027111912,0.000235204,0.00012009564,0.00010545798],"domain_scores_gemma":[0.99939233,0.00002615417,0.00018803444,0.00034469354,0.00003169222,0.000017114873],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000013096118,0.00015469729,0.00019600453,0.000041606192,0.000023560287,0.0000023361686,0.00033084524,0.000495276,0.52053803],"category_scores_gemma":[0.00010309542,0.00013095532,0.0001496151,0.000052786472,0.0000545433,0.0000012959597,0.00018772796,0.00011803701,0.0000063249527],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019725092,0.000075485616,2.4236502e-7,0.00011917634,0.00004861628,1.6111193e-7,0.0000027733374,0.0000011727235,0.21737139,3.2759182e-8,0.78197145,0.00038976996],"study_design_scores_gemma":[0.00013574515,0.0003097492,0.00015956354,0.000274965,0.000020410655,0.000002785748,0.0000047478948,0.0000039140764,0.20193927,0.000001485646,0.797058,0.00008938944],"about_ca_topic_score_codex":0.0000054004895,"about_ca_topic_score_gemma":0.000028736029,"teacher_disagreement_score":0.5205317,"about_ca_system_score_codex":0.000012386374,"about_ca_system_score_gemma":0.00013629213,"threshold_uncertainty_score":0.5340203},"labels":[],"label_agreement":null},{"id":"W6920556021","doi":"10.6084/m9.figshare.17037228","title":"Additional file 2 of Promotech: a general tool for bacterial promoter recognition","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"DNA; Feature (linguistics); Bacteria; DNA Transposable Elements","score_opus":0.02213728599145987,"score_gpt":0.2263448120061912,"score_spread":0.20420752601473133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920556021","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009031786,0.000015101193,0.0000027074784,0.000045283574,0.000050724073,0.00022015382,0.99041194,0.000011024368,0.00021128643],"genre_scores_gemma":[0.00097038184,0.0000018937335,0.008053255,0.000074791045,0.0006316147,0.0010701206,0.9881827,0.000017392043,0.0009978033],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993566,0.000018728228,0.00015806792,0.00025960896,0.0000551339,0.00015182959],"domain_scores_gemma":[0.9993982,0.000035696332,0.00009079307,0.00018547737,0.00026375952,0.000026113607],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000012555788,0.00009918973,0.00010713782,0.000019501775,0.00003232012,0.000017365659,0.0000935005,0.00028343362,0.9550506],"category_scores_gemma":[0.0013730199,0.00010113525,0.00010140484,0.00005502092,0.000010497974,0.000002420112,0.00010668668,0.000046179794,0.00013476431],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025416584,0.000033130822,5.015145e-8,0.000036327576,0.000015952415,0.0000011743264,0.0000010965596,9.273712e-8,0.3132509,4.375073e-7,0.6790321,0.0076033226],"study_design_scores_gemma":[0.00015409871,0.00015604067,0.000060347,0.00012886907,0.000003127256,0.000015399388,0.0000010737347,0.000009187719,0.39829946,0.000039660496,0.60104513,0.000087632456],"about_ca_topic_score_codex":2.2385541e-7,"about_ca_topic_score_gemma":0.000004740527,"teacher_disagreement_score":0.9549158,"about_ca_system_score_codex":0.000005049916,"about_ca_system_score_gemma":0.0001650254,"threshold_uncertainty_score":0.41241756},"labels":[],"label_agreement":null},{"id":"W6920672370","doi":"10.6084/m9.figshare.13889094","title":"Additional file 2 of Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Klebsiella pneumoniae; Zinc; Transcriptional regulation; Bacteria; Quantitative proteomics; Capsule; Quantitative analysis (chemistry); Regulation of gene expression; Proteomics","score_opus":0.01593076865884924,"score_gpt":0.22259232286348524,"score_spread":0.206661554204636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920672370","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.27203137,0.00008148705,0.00000245332,0.00012399621,0.0000146089005,0.0002048373,0.72749376,0.000006442172,0.000041049396],"genre_scores_gemma":[0.2510638,0.000017914503,0.0007614189,0.000016307436,0.000024925774,0.00034166634,0.747536,0.0000071450977,0.00023080682],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928665,0.00004557291,0.00021134887,0.00026580834,0.00009088905,0.00009971511],"domain_scores_gemma":[0.9994749,0.000026876447,0.00014608109,0.000085612046,0.00024606462,0.000020470752],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000029281822,0.00009141473,0.00010162402,0.00004059469,0.000036795413,0.00001188695,0.00004512383,0.00021348009,0.10744292],"category_scores_gemma":[0.00076692476,0.00010116733,0.00003008225,0.00014792032,0.000024517141,0.00001149201,0.000012239683,0.00006605765,0.000008195629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015330395,0.000060759543,0.00001986848,0.00003056304,0.000013091712,3.787594e-7,0.0000388432,0.000027331078,0.7329341,0.0000045923575,0.2665631,0.00029204017],"study_design_scores_gemma":[0.00045235548,0.00031819066,0.10728498,0.0006787064,0.000011844688,0.000010131016,0.00012268957,0.0004051478,0.78497994,0.00015844357,0.1053119,0.00026565016],"about_ca_topic_score_codex":0.0000036573938,"about_ca_topic_score_gemma":0.0001363609,"teacher_disagreement_score":0.16125119,"about_ca_system_score_codex":0.000015292055,"about_ca_system_score_gemma":0.00012282634,"threshold_uncertainty_score":0.893373},"labels":[],"label_agreement":null},{"id":"W6920731866","doi":"10.6084/m9.figshare.19350018","title":"Additional file 3 of The cellular response to drug perturbation is limited: comparison of large-scale chemogenomic fitness signatures","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Drug; Drug response; Pattern recognition (psychology); Perturbation (astronomy); Drug discovery","score_opus":0.009773181827747534,"score_gpt":0.22343894368627326,"score_spread":0.21366576185852573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920731866","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14880131,0.00012141555,3.6124013e-7,0.00022726765,0.000036813803,0.00014670758,0.850583,0.000004385918,0.000078693774],"genre_scores_gemma":[0.48403275,4.1611244e-7,0.00012281013,0.00024538848,0.000051368992,0.00020896475,0.5140435,0.000010878688,0.0012839235],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99928373,0.00007756332,0.00017281547,0.00020375551,0.00013573165,0.00012643273],"domain_scores_gemma":[0.9993339,0.00008102018,0.0001548694,0.00031208387,0.00009128399,0.000026809555],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000039591072,0.00008992077,0.000119702774,0.000038010065,0.000101466954,0.000005055677,0.00034822314,0.00011666928,0.8051825],"category_scores_gemma":[0.00043964488,0.000079067155,0.00009659993,0.00014635418,0.000014041493,0.0000010802886,0.0005132107,0.00011501484,0.000027689766],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009889335,0.000044151104,0.0000019394904,0.000010412797,0.000008311229,1.26273e-7,0.00006306651,0.000066816174,0.38795725,3.6947034e-7,0.6116538,0.000094871146],"study_design_scores_gemma":[0.000075443764,0.00009603077,0.00059515645,0.0000335395,0.000002529576,6.3201e-7,0.00008333584,0.00008726018,0.43263224,0.000004055262,0.5663316,0.000058138237],"about_ca_topic_score_codex":0.0000010415282,"about_ca_topic_score_gemma":0.0000057812445,"teacher_disagreement_score":0.80515486,"about_ca_system_score_codex":0.000013611522,"about_ca_system_score_gemma":0.00009334624,"threshold_uncertainty_score":0.3224265},"labels":[],"label_agreement":null},{"id":"W6920740387","doi":"10.6084/m9.figshare.17037222.v1","title":"Additional file 1 of Promotech: a general tool for bacterial promoter recognition","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Table (database); Promoter; Sequence (biology); Flat file database; File format","score_opus":0.02298567680673627,"score_gpt":0.22686684074249164,"score_spread":0.20388116393575537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920740387","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009088589,0.000014878071,0.000002763125,0.0000455034,0.000050447426,0.00022051806,0.9903594,0.000011026677,0.00020686796],"genre_scores_gemma":[0.0009853474,0.0000018479835,0.008221197,0.000074785254,0.0006229536,0.0010896795,0.98799205,0.000017414435,0.000994702],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99935645,0.000018734188,0.00015800151,0.00025979162,0.000055146847,0.0001518821],"domain_scores_gemma":[0.9993969,0.000036176058,0.00009067398,0.00018581176,0.0002643104,0.000026117164],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000012620421,0.000099219316,0.00010711323,0.000019513758,0.000032317897,0.000017330385,0.00009354933,0.00028343208,0.9558103],"category_scores_gemma":[0.0013887254,0.00010116626,0.00010142323,0.000055061064,0.000010498109,0.0000024185574,0.000106700754,0.00004618977,0.00013612674],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025411422,0.000032965003,5.1415906e-8,0.000035830228,0.000015867581,0.0000011388828,0.0000010898751,9.183087e-8,0.31717834,4.2812232e-7,0.67533684,0.0073719374],"study_design_scores_gemma":[0.00015291508,0.00015581178,0.00006119246,0.00013020732,0.0000031338043,0.000015347283,0.0000010826964,0.000009233584,0.3990198,0.000039315066,0.6003243,0.00008769029],"about_ca_topic_score_codex":2.2176006e-7,"about_ca_topic_score_gemma":0.0000047143626,"teacher_disagreement_score":0.9556742,"about_ca_system_score_codex":0.0000050485596,"about_ca_system_score_gemma":0.0001657171,"threshold_uncertainty_score":0.41254404},"labels":[],"label_agreement":null},{"id":"W6920741131","doi":"10.6084/m9.figshare.17037228.v1","title":"Additional file 2 of Promotech: a general tool for bacterial promoter recognition","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"DNA; Feature (linguistics); Bacteria; DNA Transposable Elements","score_opus":0.02213728599145987,"score_gpt":0.2263448120061912,"score_spread":0.20420752601473133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920741131","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009031786,0.000015101193,0.0000027074784,0.000045283574,0.000050724073,0.00022015382,0.99041194,0.000011024368,0.00021128643],"genre_scores_gemma":[0.00097038184,0.0000018937335,0.008053255,0.000074791045,0.0006316147,0.0010701206,0.9881827,0.000017392043,0.0009978033],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993566,0.000018728228,0.00015806792,0.00025960896,0.0000551339,0.00015182959],"domain_scores_gemma":[0.9993982,0.000035696332,0.00009079307,0.00018547737,0.00026375952,0.000026113607],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000012555788,0.00009918973,0.00010713782,0.000019501775,0.00003232012,0.000017365659,0.0000935005,0.00028343362,0.9550506],"category_scores_gemma":[0.0013730199,0.00010113525,0.00010140484,0.00005502092,0.000010497974,0.000002420112,0.00010668668,0.000046179794,0.00013476431],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025416584,0.000033130822,5.015145e-8,0.000036327576,0.000015952415,0.0000011743264,0.0000010965596,9.273712e-8,0.3132509,4.375073e-7,0.6790321,0.0076033226],"study_design_scores_gemma":[0.00015409871,0.00015604067,0.000060347,0.00012886907,0.000003127256,0.000015399388,0.0000010737347,0.000009187719,0.39829946,0.000039660496,0.60104513,0.000087632456],"about_ca_topic_score_codex":2.2385541e-7,"about_ca_topic_score_gemma":0.000004740527,"teacher_disagreement_score":0.9549158,"about_ca_system_score_codex":0.000005049916,"about_ca_system_score_gemma":0.0001650254,"threshold_uncertainty_score":0.41241756},"labels":[],"label_agreement":null},{"id":"W6920757831","doi":"10.60692/rjwdv-8c186","title":"The role of cell-envelope synthesis for envelope growth and cytoplasmic density in Bacillus subtilis","year":2022,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Bacillus subtilis; Cell envelope; Peptidoglycan; Intracellular; Cytoplasm; Bacteria; Envelope (radar); Membrane","score_opus":0.007980040321225512,"score_gpt":0.16767869562079593,"score_spread":0.15969865529957042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920757831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998692,0.000031590116,0.0003060102,0.00005104878,0.00011819632,0.00030522366,0.0001639177,0.000009520152,0.0003225123],"genre_scores_gemma":[0.9995448,0.0000065560644,0.00020792446,0.000028922428,0.00001899694,0.00013753265,0.000024725188,0.0000065541144,0.000023987888],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992457,0.000052584724,0.00032844098,0.00012582907,0.000086880165,0.00016053571],"domain_scores_gemma":[0.99952656,0.000009312102,0.00017403562,0.00020238223,0.000062666135,0.000025038971],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002985844,0.00009972082,0.00013572453,0.00007396537,0.00017699761,0.000029615188,0.00017221787,0.000104633604,0.000002125313],"category_scores_gemma":[0.000032224667,0.000078095334,0.000039773655,0.00008875806,0.000046687834,0.0000062355175,0.00021046223,0.000054846394,0.0000022514446],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028140037,0.000034917604,0.47226563,0.0012692529,0.0002651427,0.0000033306205,0.022741213,0.00016732524,0.481123,0.0019201643,0.00024175894,0.017154269],"study_design_scores_gemma":[0.0006010326,0.00016175325,0.019759417,0.000010098242,0.000015502705,0.000028272432,0.008144333,0.0002686203,0.96478456,0.000008293093,0.006052133,0.0001659928],"about_ca_topic_score_codex":0.000011057676,"about_ca_topic_score_gemma":0.0000021825142,"teacher_disagreement_score":0.48366156,"about_ca_system_score_codex":0.000020265557,"about_ca_system_score_gemma":0.000041076284,"threshold_uncertainty_score":0.31846353},"labels":[],"label_agreement":null},{"id":"W6920827544","doi":"10.6084/m9.figshare.29662660.v1","title":"Additional file 2 of The environmental adaptation of acidophilic archaea: promotion of horizontal gene transfer by genomic islands","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Horizontal gene transfer; Adaptation (eye); Gene transfer; Promotion (chess); Gene; Biodiversity","score_opus":0.0073054775353415145,"score_gpt":0.18381717303934852,"score_spread":0.176511695504007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920827544","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015060274,0.00016017354,5.327692e-7,0.000008484955,0.000038596892,0.00023526138,0.99803966,0.00000145568,0.0000098174],"genre_scores_gemma":[0.0036851175,0.00006154259,0.000032548392,0.000011146415,0.00008328002,0.00017881481,0.9958558,0.0000073591877,0.00008439719],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99923176,0.000036355454,0.00027111912,0.000235204,0.00012009564,0.00010545798],"domain_scores_gemma":[0.99939233,0.00002615417,0.00018803444,0.00034469354,0.00003169222,0.000017114873],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000013096118,0.00015469729,0.00019600453,0.000041606192,0.000023560287,0.0000023361686,0.00033084524,0.000495276,0.52053803],"category_scores_gemma":[0.00010309542,0.00013095532,0.0001496151,0.000052786472,0.0000545433,0.0000012959597,0.00018772796,0.00011803701,0.0000063249527],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019725092,0.000075485616,2.4236502e-7,0.00011917634,0.00004861628,1.6111193e-7,0.0000027733374,0.0000011727235,0.21737139,3.2759182e-8,0.78197145,0.00038976996],"study_design_scores_gemma":[0.00013574515,0.0003097492,0.00015956354,0.000274965,0.000020410655,0.000002785748,0.0000047478948,0.0000039140764,0.20193927,0.000001485646,0.797058,0.00008938944],"about_ca_topic_score_codex":0.0000054004895,"about_ca_topic_score_gemma":0.000028736029,"teacher_disagreement_score":0.5205317,"about_ca_system_score_codex":0.000012386374,"about_ca_system_score_gemma":0.00013629213,"threshold_uncertainty_score":0.5340203},"labels":[],"label_agreement":null},{"id":"W6920951895","doi":"10.6084/m9.figshare.13889097","title":"Additional file 3 of Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Klebsiella pneumoniae; Zinc; Transcriptional regulation; Bacteria; Quantitative proteomics; Capsule; Quantitative analysis (chemistry); Regulation of gene expression; Proteomics","score_opus":0.016175386656036843,"score_gpt":0.22272365488758797,"score_spread":0.20654826823155112,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920951895","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.27338186,0.00008062346,0.000002500048,0.00012373875,0.000014616686,0.0002046247,0.72614515,0.0000064214723,0.000040427876],"genre_scores_gemma":[0.2540367,0.000017701042,0.0007652905,0.000016249405,0.000024792642,0.00034077044,0.7445583,0.0000071316517,0.00023305853],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992866,0.00004555054,0.00021134902,0.00026587222,0.00009092118,0.00009973762],"domain_scores_gemma":[0.9994728,0.000026986398,0.00014594049,0.00008563898,0.00024818938,0.000020471683],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000029396018,0.00009142721,0.000101612844,0.000040604704,0.000036790843,0.000011886052,0.000045121094,0.00021346493,0.10698864],"category_scores_gemma":[0.0007740159,0.00010117281,0.00003008526,0.00014796661,0.000024518768,0.0000114928225,0.0000122340925,0.00006605888,0.000008334766],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001547711,0.00006078884,0.000020405396,0.000030773004,0.000013091,3.7463073e-7,0.000038842754,0.000027252792,0.73644274,0.00000451115,0.26305643,0.00028932514],"study_design_scores_gemma":[0.00044970587,0.00031421488,0.1068812,0.00067641615,0.000011661322,0.000009926354,0.00012182016,0.00040316832,0.78797776,0.00015605119,0.102734976,0.00026310375],"about_ca_topic_score_codex":0.0000036612576,"about_ca_topic_score_gemma":0.00013645951,"teacher_disagreement_score":0.16032143,"about_ca_system_score_codex":0.000015336116,"about_ca_system_score_gemma":0.00012330538,"threshold_uncertainty_score":0.8938277},"labels":[],"label_agreement":null},{"id":"W6920959010","doi":"10.6084/m9.figshare.17037222","title":"Additional file 1 of Promotech: a general tool for bacterial promoter recognition","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Table (database); Promoter; Sequence (biology); Flat file database; File format","score_opus":0.02298567680673627,"score_gpt":0.22686684074249164,"score_spread":0.20388116393575537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920959010","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009088589,0.000014878071,0.000002763125,0.0000455034,0.000050447426,0.00022051806,0.9903594,0.000011026677,0.00020686796],"genre_scores_gemma":[0.0009853474,0.0000018479835,0.008221197,0.000074785254,0.0006229536,0.0010896795,0.98799205,0.000017414435,0.000994702],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99935645,0.000018734188,0.00015800151,0.00025979162,0.000055146847,0.0001518821],"domain_scores_gemma":[0.9993969,0.000036176058,0.00009067398,0.00018581176,0.0002643104,0.000026117164],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000012620421,0.000099219316,0.00010711323,0.000019513758,0.000032317897,0.000017330385,0.00009354933,0.00028343208,0.9558103],"category_scores_gemma":[0.0013887254,0.00010116626,0.00010142323,0.000055061064,0.000010498109,0.0000024185574,0.000106700754,0.00004618977,0.00013612674],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025411422,0.000032965003,5.1415906e-8,0.000035830228,0.000015867581,0.0000011388828,0.0000010898751,9.183087e-8,0.31717834,4.2812232e-7,0.67533684,0.0073719374],"study_design_scores_gemma":[0.00015291508,0.00015581178,0.00006119246,0.00013020732,0.0000031338043,0.000015347283,0.0000010826964,0.000009233584,0.3990198,0.000039315066,0.6003243,0.00008769029],"about_ca_topic_score_codex":2.2176006e-7,"about_ca_topic_score_gemma":0.0000047143626,"teacher_disagreement_score":0.9556742,"about_ca_system_score_codex":0.0000050485596,"about_ca_system_score_gemma":0.0001657171,"threshold_uncertainty_score":0.41254404},"labels":[],"label_agreement":null},{"id":"W6921175138","doi":"10.6084/m9.figshare.29662657","title":"Additional file 1 of The environmental adaptation of acidophilic archaea: promotion of horizontal gene transfer by genomic islands","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Horizontal gene transfer; Adaptation (eye); Gene transfer; Promotion (chess); Gene; Biodiversity","score_opus":0.007561238491548047,"score_gpt":0.184217766519428,"score_spread":0.17665652802787996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6921175138","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015153508,0.00015792118,5.433269e-7,0.000008525409,0.000038399277,0.00023566099,0.9980325,0.0000014561351,0.000009621457],"genre_scores_gemma":[0.003739789,0.00006012149,0.000033207474,0.00001114659,0.0000821913,0.00018196725,0.9958001,0.0000073689366,0.00008415295],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99923164,0.00003636655,0.00027100992,0.00023536272,0.00012012269,0.00010549296],"domain_scores_gemma":[0.99939156,0.00002649116,0.00018779784,0.00034528927,0.0000317557,0.000017117103],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000013160764,0.00015474154,0.00019596137,0.00004163071,0.000023558736,0.0000023316172,0.0003310109,0.00049527345,0.5248068],"category_scores_gemma":[0.000104227576,0.00013099384,0.00014964111,0.00005282341,0.000054543976,0.0000012951614,0.0001877517,0.000118061456,0.0000063862713],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019731022,0.000075160475,2.4834537e-7,0.0001176695,0.000048392267,1.5652303e-7,0.0000027584883,0.0000011623061,0.22133152,3.210085e-8,0.7780247,0.0003784797],"study_design_scores_gemma":[0.00013479739,0.00030943385,0.00016176955,0.00027781056,0.000020459598,0.0000027777876,0.0000047877543,0.000003934343,0.20269726,0.0000014738067,0.796296,0.00008948082],"about_ca_topic_score_codex":0.0000053520016,"about_ca_topic_score_gemma":0.00002858391,"teacher_disagreement_score":0.5248004,"about_ca_system_score_codex":0.000012383183,"about_ca_system_score_gemma":0.00013683995,"threshold_uncertainty_score":0.53417736},"labels":[],"label_agreement":null},{"id":"W6923616133","doi":"10.14288/bcs.v0i81.185749","title":"Distant Neighbours: A Comparative History of Seattle and Vancouver by Norbert MacDonald","year":2014,"lang":"en","type":"article","venue":"Open Collections","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Comparative history; Comparative literature; World history; Urban history","score_opus":0.010667016440076437,"score_gpt":0.22986508621015847,"score_spread":0.21919806977008202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6923616133","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2707486,0.0026963204,0.0056582433,0.0006528072,0.0029375106,0.0014725976,0.00051492744,0.000036159676,0.71528286],"genre_scores_gemma":[0.7743904,0.00013655171,0.0010955065,0.0001793916,0.000070635615,0.00004721271,0.000062241736,0.0000135278515,0.22400455],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99948543,0.000036818306,0.000119331715,0.00021150823,0.000040462557,0.00010646831],"domain_scores_gemma":[0.9996463,0.000010302756,0.0000629693,0.00018297581,0.000054193515,0.00004327201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006357628,0.00008419808,0.00014491446,0.000016572081,0.00014738977,0.00003946647,0.00015112937,0.00010923835,0.00014372088],"category_scores_gemma":[0.00001523292,0.00007922362,0.000027274498,0.00008599011,0.00014528776,0.0000026660186,0.00016703935,0.00005162595,9.1154095e-7],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049879778,0.000055362725,0.00003810782,0.0000030469614,0.000029150446,6.942706e-8,0.000019607145,0.0000016977513,0.33904612,0.000050678525,0.6604811,0.00022517954],"study_design_scores_gemma":[0.0004264103,0.00037731402,0.00007146294,0.00000465451,0.00001491639,0.0000032763346,0.000042188458,0.000072035706,0.09557541,0.00015257187,0.90315646,0.000103277445],"about_ca_topic_score_codex":0.00096727535,"about_ca_topic_score_gemma":0.004681426,"teacher_disagreement_score":0.5036418,"about_ca_system_score_codex":0.00003133423,"about_ca_system_score_gemma":0.0000815171,"threshold_uncertainty_score":0.32306454},"labels":[],"label_agreement":null},{"id":"W6923754577","doi":"10.14288/1.0446639","title":"[Three men and a child outside cabin with sign 'Pickett and Devlin Freighters Carriers Tel No. 8']","year":2024,"lang":"en","type":"other","venue":"Open Collections","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Sign (mathematics); Derogation; Photography; Legibility","score_opus":0.005907966459420304,"score_gpt":0.2115949613923026,"score_spread":0.2056869949328823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6923754577","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00030891964,0.0027205246,0.00022694167,0.00040700578,0.00044053083,0.001100115,0.00043513882,0.000049989398,0.99431086],"genre_scores_gemma":[0.0016357328,0.001184909,0.0026544994,0.00015056082,0.0004252851,0.0001710602,0.000111847075,0.00028853805,0.99337757],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99893004,0.000022160822,0.00013582423,0.00062863465,0.00006336579,0.00021995114],"domain_scores_gemma":[0.9994503,0.000003888968,0.00007353912,0.00033696683,0.00003426849,0.00010102811],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006117405,0.00027665548,0.0002646073,0.00009523669,0.0003012636,0.00043268868,0.00021561474,0.00056913175,0.00022200082],"category_scores_gemma":[0.00001553748,0.00023105546,0.000035865385,0.00019941089,0.00018200041,0.000001936812,0.00037664195,0.00020397984,0.000010413414],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006734381,0.000020521251,0.000017844535,0.000042705928,0.00035751663,0.000008395676,0.000015532707,4.056339e-7,0.004306324,0.000015188414,0.99451536,0.00063288334],"study_design_scores_gemma":[0.0005811089,0.0005848989,0.00001941733,0.00012176512,0.00013214513,0.00007373412,0.00006946908,0.000010244674,0.0036738098,0.00012435307,0.9942408,0.00036825417],"about_ca_topic_score_codex":0.004565265,"about_ca_topic_score_gemma":0.022914872,"teacher_disagreement_score":0.018349607,"about_ca_system_score_codex":0.000016110862,"about_ca_system_score_gemma":0.00012569493,"threshold_uncertainty_score":0.9949144},"labels":[],"label_agreement":null},{"id":"W6925266693","doi":"10.17632/p27nwr4xz5.1","title":"Data for: Building related energy poverty in developed countries — past, present, and future from a Canadian perspective.","year":2019,"lang":"en","type":"dataset","venue":"Data Archiving and Networked Services (DANS)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Developed country; Poverty; Developing country; Energy (signal processing); Energy poverty","score_opus":0.012835807115414991,"score_gpt":0.25203235182936123,"score_spread":0.23919654471394625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6925266693","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.018070843,0.005245341,0.00004577386,0.00095164287,0.00049588224,0.0002887713,0.9748676,0.000010443709,0.000023720208],"genre_scores_gemma":[0.0027900322,0.018713279,0.0007714816,0.0005069708,0.0020562478,0.000013318749,0.97507435,0.000041187883,0.00003311393],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99736863,0.00011762545,0.00035537046,0.0014957775,0.00010918361,0.00055338437],"domain_scores_gemma":[0.99711317,0.00007589899,0.00019421849,0.0023994525,0.000044975986,0.00017227001],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00028429233,0.0004321057,0.00045279323,0.00014378622,0.00018391173,0.00015965733,0.0022074706,0.00076744024,0.000008918667],"category_scores_gemma":[0.000013931356,0.00039587912,0.000026188955,0.00012559789,0.00011746268,0.000022109116,0.0029556768,0.0003242379,0.0000011730947],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002811386,0.00003150597,0.0008102349,0.00020995566,0.00041489545,0.000018115237,0.0001093273,0.000015106368,0.0025216518,0.000035070938,0.99295855,0.0025944486],"study_design_scores_gemma":[0.0005909961,0.0000798487,0.0018173553,0.0001621374,0.000112150236,0.000018374005,0.00024939218,0.002639035,0.00006133628,0.00019197432,0.9935816,0.00049578055],"about_ca_topic_score_codex":0.13094844,"about_ca_topic_score_gemma":0.5935811,"teacher_disagreement_score":0.46263263,"about_ca_system_score_codex":0.00003045482,"about_ca_system_score_gemma":0.00025947852,"threshold_uncertainty_score":0.9998493},"labels":[],"label_agreement":null},{"id":"W6925277486","doi":"10.17611/dp/15311004","title":"Magnetotelluric Transfer Functions","year":2017,"lang":"en","type":"other","venue":"NSF Seismological Facility for the Advancement of Geoscience (SAGE)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Geological Survey of Canada","funders":"","keywords":"Magnetotellurics; Transfer function; Field (mathematics); Transfer (computing); Interpretation (philosophy)","score_opus":0.020236508137377037,"score_gpt":0.2601943293207847,"score_spread":0.23995782118340764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6925277486","genre_codex":"methods","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0031172482,0.0026382832,0.9891427,0.0010501903,0.00090094545,0.0009364721,0.0017959914,0.000033732216,0.00038441317],"genre_scores_gemma":[0.014010034,0.0059515513,0.0009865016,0.00033386413,0.00019710277,0.00013423513,0.00027298837,0.000039954,0.9780738],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99837023,0.000039971455,0.00026597604,0.0006907885,0.0002062085,0.00042684752],"domain_scores_gemma":[0.99867153,0.000025914711,0.00015787773,0.0010249511,0.000050431314,0.00006928314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030483524,0.00030691427,0.0003392685,0.000052797444,0.00025475258,0.00002674065,0.0009017433,0.00057880796,0.00033366831],"category_scores_gemma":[0.00011330972,0.00020258293,0.00024369113,0.00007935939,0.001084836,0.0000034830748,0.00023989512,0.00015352965,0.000016243954],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009231792,0.00012086464,0.00003410755,0.000051368275,0.000050025457,8.743692e-7,0.000003359708,0.00001812383,0.06962287,0.00007587758,0.00014680043,0.9297834],"study_design_scores_gemma":[0.00037629003,0.0009533431,0.00022464296,0.000026933303,0.000057504585,0.0000037481655,0.000012710027,0.000017433125,0.0108272955,0.00006907973,0.9871837,0.00024734894],"about_ca_topic_score_codex":0.00010640576,"about_ca_topic_score_gemma":0.00006799998,"teacher_disagreement_score":0.9881562,"about_ca_system_score_codex":0.000013609905,"about_ca_system_score_gemma":0.00006795985,"threshold_uncertainty_score":0.8261092},"labels":[],"label_agreement":null},{"id":"W6926043142","doi":"10.21949/1501154","title":"Air Carrier Financial Statistics: second quarter: [2013]","year":2014,"lang":"en","type":"dataset","venue":"ROSA P","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Income statement; Balance sheet; Revenue; Quarter (Canadian coin); Financial analysis; Financial ratio; Carrier signal","score_opus":0.0038913744182692165,"score_gpt":0.21458894869683517,"score_spread":0.21069757427856595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926043142","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0038262939,0.00035008148,0.00024236755,0.00012269654,0.0014424367,0.00017930685,0.9937937,0.000013530227,0.000029564171],"genre_scores_gemma":[0.0013626467,0.0005051291,0.0004093582,0.0007616111,0.0017661757,0.00002929332,0.9945377,0.00003122853,0.0005968741],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984456,0.00008239079,0.00032277947,0.0006121452,0.00012797929,0.00040916222],"domain_scores_gemma":[0.9986867,0.000011777399,0.00019387438,0.0009093486,0.00008567456,0.000112679794],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00016316646,0.0003670288,0.00037461496,0.000066429464,0.00008438547,0.00003408573,0.00049047306,0.0014418155,0.00045065396],"category_scores_gemma":[0.000104480794,0.0003577038,0.00011112649,0.000050588256,0.00014628754,0.0000010530483,0.00026144114,0.00032617163,0.00018623853],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050409963,0.000031060874,0.0000029984212,0.00007073743,0.00004038629,0.000008316102,0.0000018229589,7.316657e-7,0.019760791,0.000016024256,0.9793824,0.0006343396],"study_design_scores_gemma":[0.0003418317,0.0005570305,0.00009742088,0.000013410856,0.000046912613,0.000018838093,0.0000023178484,0.0000018135715,0.015579107,0.00007536386,0.98282367,0.0004422597],"about_ca_topic_score_codex":0.000064783846,"about_ca_topic_score_gemma":0.0016261245,"teacher_disagreement_score":0.0041816845,"about_ca_system_score_codex":0.000014149837,"about_ca_system_score_gemma":0.00018912867,"threshold_uncertainty_score":0.99988747},"labels":[],"label_agreement":null},{"id":"W6926353387","doi":"10.25362/laade.wlmma_t_12903","title":"Fairuz in America: songs from her concerts in the U.S.A. and Canada, including Carnegie Hall","year":2014,"lang":"en","type":"other","venue":"Verbundzentrale des GBV","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Power (physics); Focus (optics); Agency (philosophy); Face (sociological concept)","score_opus":0.010379696913348379,"score_gpt":0.21684476055904497,"score_spread":0.20646506364569658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926353387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96425176,0.008277386,0.00006603282,0.0007542697,0.0005454896,0.0004966025,0.00026591425,0.000023905759,0.025318624],"genre_scores_gemma":[0.97869587,0.0047891093,0.00037700846,0.0008474183,0.00049825705,0.000035275618,0.00044268498,0.00016579771,0.014148578],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987684,0.000093186216,0.00019996507,0.0004552987,0.00010822189,0.00037494375],"domain_scores_gemma":[0.9994377,0.000017417986,0.00011116884,0.0003708266,0.000010989718,0.000051925792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007551881,0.00025515998,0.00029455952,0.000061261184,0.000032888554,0.000033882625,0.00034510397,0.0004921784,0.000093846],"category_scores_gemma":[0.000027698425,0.00021009035,0.00003765323,0.00007449315,0.00024056884,0.0000012799115,0.00013123566,0.00020207519,0.000005178195],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017186972,0.00022054858,0.044483423,0.0002214729,0.00034634524,0.00024705948,0.0005986187,0.000030115056,0.25157157,0.00023162506,0.66734314,0.034534253],"study_design_scores_gemma":[0.0005429365,0.00009910566,0.005112679,0.00009067321,0.000019641473,0.0000079016545,0.000191083,0.000014713131,0.003730217,0.00008059956,0.98977196,0.000338499],"about_ca_topic_score_codex":0.5864348,"about_ca_topic_score_gemma":0.9108191,"teacher_disagreement_score":0.32438436,"about_ca_system_score_codex":0.00004747553,"about_ca_system_score_gemma":0.00014364246,"threshold_uncertainty_score":0.8567236},"labels":[],"label_agreement":null},{"id":"W6926567602","doi":"10.25316/ir-14364","title":"The Nanaimo Free Press [Saturday, July 15, 1882]","year":2020,"lang":"en","type":"other","venue":"VIUSpace (Vancouver Island University Library)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"","score_opus":0.00457589205765946,"score_gpt":0.16840935839354582,"score_spread":0.16383346633588636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926567602","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008852279,0.0025053874,0.00012211103,0.0020319552,0.0014113549,0.00037689228,0.00076791603,0.00017953198,0.99251634],"genre_scores_gemma":[0.0008419674,0.00881732,0.0006316576,0.0002882929,0.00091585383,0.0000015645471,0.00007852238,0.00025735586,0.98816746],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99858546,0.00009003903,0.00012999127,0.0006325495,0.00015988837,0.0004020882],"domain_scores_gemma":[0.99862736,0.00001468667,0.00020803517,0.0009860689,0.000017660199,0.00014619526],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000024897214,0.00039397515,0.00029996192,0.00007891507,0.00018690614,0.00007913435,0.0013555529,0.00097003113,0.00018241873],"category_scores_gemma":[0.00002209455,0.00031819247,0.00018671114,0.00017044059,0.00026055158,0.000008861341,0.0012189964,0.00035541583,0.00003827417],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015342295,0.00002425151,0.0000052809028,0.000029158591,0.00020386274,0.000037559148,0.00001581488,0.0000011582708,0.0026334878,0.00020187546,0.9960975,0.0005966082],"study_design_scores_gemma":[0.00076755614,0.00020817551,0.000009510676,0.000031231226,0.00006721911,0.0000021611636,0.000057138248,0.000004043917,0.009255911,0.000047812187,0.98911965,0.00042956462],"about_ca_topic_score_codex":0.00015621635,"about_ca_topic_score_gemma":0.08963261,"teacher_disagreement_score":0.08947639,"about_ca_system_score_codex":0.00001102905,"about_ca_system_score_gemma":0.00014504754,"threshold_uncertainty_score":0.99992704},"labels":[],"label_agreement":null},{"id":"W6926825451","doi":"10.25549/pcra-c14-193558","title":"Khristiaskiy vestnik = [Christian herald], vol. 20, whole no. 220-222 (1956 January-March)","year":2021,"lang":"en","type":"dataset","venue":"University of Southern California Digital Library","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Slavic languages; Diaspora; Faith; China; Slavic studies; Christianity","score_opus":0.0038751006264579196,"score_gpt":0.15814578239907234,"score_spread":0.15427068177261444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926825451","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0098402435,0.000911453,0.000023128978,0.00041912196,0.00025533265,0.000211435,0.9878087,0.000044714532,0.0004858504],"genre_scores_gemma":[0.0008968341,0.0006300003,0.00023927647,0.00019721188,0.0005938176,6.084864e-7,0.9945075,0.000058668098,0.0028760948],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981535,0.00006446375,0.00032792529,0.00078813476,0.00022261805,0.00044332602],"domain_scores_gemma":[0.99834603,0.00001594142,0.00031362573,0.0009476388,0.00015186956,0.00022490641],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000047927384,0.00047241038,0.0005274952,0.00014095934,0.00013752928,0.00013218424,0.0010353798,0.0011528978,0.0010228673],"category_scores_gemma":[0.00006919917,0.00052320963,0.00035490998,0.00017203476,0.0004468215,0.00001559687,0.0014261005,0.0004173049,0.0056116804],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023164583,0.00018992681,0.00013352222,0.00013523514,0.00018593235,0.00011463131,0.0000053691724,0.0000038514445,0.0039828294,4.0283422e-7,0.9944287,0.00058798806],"study_design_scores_gemma":[0.0005349122,0.00023215475,0.0000070199612,0.00009702224,0.00007696869,0.000016041584,0.0002923902,0.0000049198034,0.0014226061,0.00003869988,0.9967122,0.0005650358],"about_ca_topic_score_codex":0.00010668894,"about_ca_topic_score_gemma":0.00004955145,"teacher_disagreement_score":0.00894341,"about_ca_system_score_codex":0.000019207497,"about_ca_system_score_gemma":0.00035538542,"threshold_uncertainty_score":0.9998903},"labels":[],"label_agreement":null},{"id":"W6926903413","doi":"10.26022/ieda/329988","title":"Processed sub-bottom SEG-Y files acquired near-bottom in 2013 from the continental slope of the Canadian Beaufort Sea with MBARI mapping AUV on mission 20131003m1","year":2021,"lang":"en","type":"dataset","venue":"LDEO - Lamont-Doherty Earth Observatory, Columbia University","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Beaufort sea; Cruise; Geological survey; Beaufort scale; Continental shelf; Remotely operated underwater vehicle; Seabed","score_opus":0.010463106625840102,"score_gpt":0.17819146604337008,"score_spread":0.16772835941752998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926903413","genre_codex":"empirical","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7041661,0.00030851568,9.595121e-7,0.0008977093,0.00032600042,0.00065183354,0.2936034,0.000012047894,0.000033421715],"genre_scores_gemma":[0.30493027,0.0013453235,0.0004959681,0.0014408163,0.00034996594,0.000012627939,0.6893899,0.0000897487,0.0019454171],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99730897,0.00037111572,0.00037851394,0.0009339077,0.00038740717,0.0006200687],"domain_scores_gemma":[0.9976222,0.00004950028,0.00044366877,0.0013982694,0.00025737693,0.0002289907],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00027208045,0.00045857788,0.0005833646,0.0000622379,0.0005977086,0.00019008263,0.0014506972,0.0013382118,0.00018522113],"category_scores_gemma":[0.00007931225,0.00039744758,0.00020744358,0.00049284374,0.0005451334,0.000019474784,0.00051531784,0.00073329697,0.000007997518],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027249323,0.00015720305,0.0622041,0.00008041216,0.00025542633,0.00009549657,0.000053695672,0.000027664524,0.023146762,8.26194e-7,0.91340256,0.00030335906],"study_design_scores_gemma":[0.0010562411,0.00022302897,0.21537158,0.00028630477,0.000094521645,0.0000046358346,0.00024048316,0.00003921141,0.005176123,0.0000027038386,0.7770529,0.00045226197],"about_ca_topic_score_codex":0.57141143,"about_ca_topic_score_gemma":0.9734351,"teacher_disagreement_score":0.40202367,"about_ca_system_score_codex":0.00012970202,"about_ca_system_score_gemma":0.0023363682,"threshold_uncertainty_score":0.9999583},"labels":[],"label_agreement":null},{"id":"W6927224044","doi":"10.3389/fvets.2022.1107315.s001","title":"Data_Sheet_1_Quality of life in dogs with idiopathic epilepsy and their owners with an emphasis on breed—A pilot study.pdf","year":2023,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Labrador Retriever; Breed; Quality of life (healthcare); Beagle; Epilepsy; Animal-assisted therapy; Significant difference","score_opus":0.04173252710983434,"score_gpt":0.2723930297014871,"score_spread":0.23066050259165277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6927224044","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1398444,0.00015775164,1.3955173e-7,0.000031797394,0.000037546713,0.00049867126,0.85940933,0.000013657826,0.000006682419],"genre_scores_gemma":[0.1256,0.00011161214,0.000010521694,0.00011890927,0.00013498987,0.00014013879,0.8738297,0.000039767256,0.0000143389025],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99813515,0.00016367645,0.0003693817,0.0008469081,0.00017423008,0.00031066049],"domain_scores_gemma":[0.9983194,0.000019433457,0.00030381768,0.0011464735,0.000087261455,0.00012364794],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018652708,0.00042868243,0.00056545774,0.0001546826,0.000049569495,0.00004313907,0.0005784005,0.0004464685,0.00065593334],"category_scores_gemma":[0.00022520803,0.00028808168,0.000029905052,0.00025398296,0.00006818124,0.0000050041485,0.00040775,0.00035683042,0.00010051737],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021168392,0.001078733,0.00042941788,0.0006491937,0.00024986282,0.00005404236,0.00002935607,0.000010047864,0.0039448803,3.8060185e-7,0.9904805,0.0009567744],"study_design_scores_gemma":[0.0056294543,0.09004417,0.024986569,0.00430636,0.00013377049,0.000052927713,0.00076084916,0.000009328799,0.009465965,0.000008673511,0.86254907,0.0020528429],"about_ca_topic_score_codex":0.00062941876,"about_ca_topic_score_gemma":0.009756112,"teacher_disagreement_score":0.12793139,"about_ca_system_score_codex":0.000013248134,"about_ca_system_score_gemma":0.00023107481,"threshold_uncertainty_score":0.99995714},"labels":[],"label_agreement":null},{"id":"W6928866533","doi":"10.4224/40001246","title":"National Fire Code of Canada: 2005","year":2008,"lang":"fr","type":"standard","venue":"NPARC","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Windsor","score_opus":0.008859879775017974,"score_gpt":0.21872044684419367,"score_spread":0.2098605670691757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6928866533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.51650584,0.042553924,0.00035709993,0.031153463,0.015474788,0.0015142402,0.060725585,0.000045377285,0.33166972],"genre_scores_gemma":[0.85194695,0.046096057,0.004704801,0.0010194412,0.0040254015,0.00003686728,0.004814945,0.00013298079,0.087222554],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99788606,0.000059810707,0.0005042309,0.00053187646,0.00047427203,0.00054375455],"domain_scores_gemma":[0.99863243,0.000017792187,0.00031526675,0.00039769025,0.0004962414,0.00014055113],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001470868,0.0003579097,0.00047656414,0.000048469068,0.00012738415,0.000009383808,0.0004668993,0.001324318,0.00090951065],"category_scores_gemma":[0.00015516959,0.00037856845,0.00016293464,0.00009782482,0.0004538689,0.000001213136,0.00024880108,0.00033258673,0.0000055090854],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008453081,0.0000623793,0.00003372342,0.000098281176,0.0001943153,0.00001572512,0.000007927182,0.00002563034,0.38773817,0.00063181494,0.60528415,0.0058233775],"study_design_scores_gemma":[0.00037413885,0.00023076238,0.00016639374,0.00005110818,0.000028781218,0.00006721066,0.000009636911,0.000052980635,0.18224543,0.00026295637,0.8161966,0.00031400222],"about_ca_topic_score_codex":0.008929684,"about_ca_topic_score_gemma":0.28166515,"teacher_disagreement_score":0.33544114,"about_ca_system_score_codex":0.00019587205,"about_ca_system_score_gemma":0.007872744,"threshold_uncertainty_score":0.99997216},"labels":[],"label_agreement":null},{"id":"W6929239095","doi":"10.48448/scgx-yx21","title":"MIDI-GPT: A Controllable Generative Model for Computer-Assisted Multitrack Music Composition","year":2025,"lang":"en","type":"other","venue":"Underline Science Inc.","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Polyphony; Musical; Generative grammar; Musical composition; Transformer; Representation (politics); Generative model; Sequence (biology)","score_opus":0.019683035079943526,"score_gpt":0.27222484502373895,"score_spread":0.25254180994379544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929239095","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0074444185,0.0015865861,0.958454,0.0011657892,0.0024927296,0.0026530782,0.0017802363,0.0002137664,0.02420939],"genre_scores_gemma":[0.19397712,0.00060852605,0.57230204,0.0031858007,0.0026286303,0.00023030707,0.0031658346,0.00035855704,0.2235432],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9983441,0.000025989584,0.00026342922,0.0008016399,0.00015964726,0.00040515105],"domain_scores_gemma":[0.99896604,0.000010636697,0.00020283606,0.0004789001,0.00025845732,0.00008313076],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019074627,0.00029976355,0.00033342946,0.0002505089,0.00018913175,0.00009109102,0.00054120965,0.00060018734,0.000032866632],"category_scores_gemma":[0.000026806078,0.0002769186,0.000098069446,0.00022281674,0.00055054895,0.0000031377776,0.00024937975,0.0001238606,0.000008012537],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005123171,0.00013353367,0.0000024213248,0.000038382168,0.00007143473,8.9124785e-7,0.000009914627,0.0010311976,0.9295687,0.0006532631,0.059880767,0.008558266],"study_design_scores_gemma":[0.0022987775,0.00067539857,0.000012828384,0.00011279183,0.00010465237,0.000008806562,0.00001600823,0.6133968,0.21877621,0.00030228778,0.16358697,0.0007084593],"about_ca_topic_score_codex":0.00004825611,"about_ca_topic_score_gemma":0.00040293168,"teacher_disagreement_score":0.7107925,"about_ca_system_score_codex":0.00004228504,"about_ca_system_score_gemma":0.0006456536,"threshold_uncertainty_score":0.9999683},"labels":[],"label_agreement":null},{"id":"W6929279282","doi":"10.4224/21274684","title":"Helping SMEs plug into digital technology expertise at local colleges: case study","year":2014,"lang":"en","type":"report","venue":"NPARC","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Plug and play; Key (lock); Work (physics); Component (thermodynamics); Information technology","score_opus":0.013478861992697721,"score_gpt":0.266831391306791,"score_spread":0.2533525293140933,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929279282","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98972625,0.0014803106,0.00056082115,0.00037299364,0.0011718591,0.0008034866,0.00009996783,0.000115343006,0.0056689605],"genre_scores_gemma":[0.99308074,0.0007804387,0.00031591536,0.000068056426,0.0008614987,0.00017385457,0.00028913037,0.00011803343,0.004312357],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99710554,0.000059520058,0.00066042546,0.0012066761,0.0003733469,0.0005944764],"domain_scores_gemma":[0.99785274,0.000013723419,0.00033488328,0.0012908299,0.00035520518,0.00015259073],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00026347395,0.0006038745,0.0007413577,0.00029150976,0.00024459508,0.00008281834,0.0005722612,0.0022060825,0.000084044186],"category_scores_gemma":[0.00021686462,0.00056385755,0.0002125266,0.0002225468,0.00052890443,0.0000031596892,0.0015819767,0.00043413998,0.00004418415],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023606149,0.0007543607,0.004490011,0.00023802524,0.000875926,0.00499514,0.00022684027,0.0000061585165,0.7564692,0.00002699211,0.0368367,0.19484457],"study_design_scores_gemma":[0.0013659634,0.0032112326,0.00004256851,0.00009818896,0.00013915138,0.013351889,0.0018996078,0.000027900414,0.17117175,0.00022934652,0.807167,0.0012954216],"about_ca_topic_score_codex":0.00016519589,"about_ca_topic_score_gemma":0.0010309586,"teacher_disagreement_score":0.7703303,"about_ca_system_score_codex":0.0002445042,"about_ca_system_score_gemma":0.0005319862,"threshold_uncertainty_score":0.9996813},"labels":[],"label_agreement":null},{"id":"W6929367758","doi":"10.4224/23001725","title":"Life here and out there","year":2017,"lang":"en","type":"article","venue":"NPARC","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Herzberg Institute of Astrophysics","funders":"","keywords":"","score_opus":0.013564068859057239,"score_gpt":0.24691232458823628,"score_spread":0.23334825572917905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929367758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9785662,0.0002725623,0.000039512383,0.002648538,0.00018380355,0.000057436067,0.000009275427,0.000008325835,0.018214306],"genre_scores_gemma":[0.997066,0.00046360522,0.0006511966,0.00028056587,0.00024506424,0.000004120821,0.0000074627283,0.0000099749,0.0012719694],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995779,0.000009157961,0.00006461341,0.00018818736,0.000033114422,0.00012707502],"domain_scores_gemma":[0.99940366,0.0000013378684,0.000050000683,0.00044727066,0.000020544052,0.000077169636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000048433572,0.000075366974,0.00007506322,0.000007858586,0.00014102874,0.000057461308,0.00020858027,0.00018765364,0.000049867933],"category_scores_gemma":[0.00009913412,0.00006392514,0.000024355233,0.0000042999027,0.00013720413,0.0000011781385,0.00022292598,0.00005135968,0.0000145849335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018537174,0.000009794777,0.002982046,0.000004441224,0.000016725275,0.0000016282584,0.0000060379757,4.2764665e-8,0.9805053,0.000355999,0.002432819,0.013666614],"study_design_scores_gemma":[0.00055739476,0.00027313043,0.01884767,0.000008086626,0.000012545085,0.000010845099,0.000039456583,0.000012448325,0.61557066,0.0018877533,0.362565,0.00021499787],"about_ca_topic_score_codex":0.000004416911,"about_ca_topic_score_gemma":0.00002978336,"teacher_disagreement_score":0.36493465,"about_ca_system_score_codex":0.0000013024484,"about_ca_system_score_gemma":0.000028437025,"threshold_uncertainty_score":0.26067913},"labels":[],"label_agreement":null},{"id":"W6929576745","doi":"10.48577/jpl.axq6zm","title":"Glacial Vermicular Ridge Features on Axel Heiberg Island, Nunavut, Canada","year":2025,"lang":"en","type":"dataset","venue":"JPL Data","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Fjord; Glacial period; Moraine; Ridge; Debris; Glacier; Meltwater; Glacial lake","score_opus":0.008239018343353997,"score_gpt":0.24155363430499904,"score_spread":0.23331461596164504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929576745","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0024659277,0.0010414112,0.0000022120125,0.0005876273,0.0021657615,0.00025086565,0.9933346,0.000010265818,0.00014131056],"genre_scores_gemma":[0.0003886487,0.002236138,0.000046345853,0.0017718615,0.0013346289,0.000015159384,0.9930896,0.00001853074,0.0010990753],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99785537,0.00006406431,0.00030141274,0.001101349,0.00024451833,0.0004333083],"domain_scores_gemma":[0.996042,0.000013678242,0.00015864507,0.003634677,0.000056154666,0.000094806586],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00010884536,0.00045472418,0.00039454686,0.00007501197,0.00011444141,0.0000628007,0.002345769,0.0011930187,0.00008243476],"category_scores_gemma":[0.00016969795,0.00041470936,0.00007669292,0.00011759336,0.000089022535,0.0000022373215,0.0020707783,0.000511196,0.000010327443],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121188365,0.00005851593,0.0000056952913,0.00006259042,0.00018141879,0.000071703806,3.650317e-7,0.0000014393087,0.0076870397,0.0000063414604,0.99110556,0.0006981217],"study_design_scores_gemma":[0.00040306043,0.00015679387,0.000116406234,0.000047276404,0.000104734274,0.000024740597,0.0000031277843,0.0000016860455,0.010969926,0.0000061550336,0.9877175,0.0004486001],"about_ca_topic_score_codex":0.08028165,"about_ca_topic_score_gemma":0.8370649,"teacher_disagreement_score":0.7567833,"about_ca_system_score_codex":0.00003990821,"about_ca_system_score_gemma":0.0012015243,"threshold_uncertainty_score":0.9998305},"labels":[],"label_agreement":null},{"id":"W6929661279","doi":"10.5066/p9hafngd","title":"Abundance, harvests, and harvest rates of selected duck species in the Atlantic Flyway, 1998-2017","year":2019,"lang":"en","type":"dataset","venue":"USGS DOI Tool Production Environment","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Flyway; Abundance (ecology); Wildlife; Aerial survey; Relative species abundance; Common species; Waterfowl","score_opus":0.012859012179455839,"score_gpt":0.22039182996970716,"score_spread":0.20753281779025132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929661279","genre_codex":"empirical","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8572228,0.0012688338,0.0000058544038,0.0006542113,0.0006041145,0.0008650453,0.13936137,0.0000053429358,0.000012448368],"genre_scores_gemma":[0.10520769,0.028821012,0.0002016733,0.00013488959,0.0010099759,0.00007945862,0.8622462,0.00003720078,0.0022618668],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983373,0.000117746444,0.00038728415,0.00070661324,0.00018770857,0.00026332165],"domain_scores_gemma":[0.99868286,0.000010672537,0.00029038746,0.00097331067,0.00001778519,0.0000250169],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028404762,0.00031023478,0.00032256037,0.00009427001,0.00006537198,0.00004611917,0.00037231902,0.00047251157,0.000047408397],"category_scores_gemma":[0.00007243351,0.0002396522,0.000057843445,0.00010396547,0.00035499604,0.0000066167436,0.00022127749,0.00030061757,0.00005168714],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007528317,0.00020562502,0.0011958833,0.000145929,0.00007000735,0.0000029524992,0.00002311204,0.00004763054,0.34216964,0.0000044672915,0.6558408,0.00021868241],"study_design_scores_gemma":[0.0002590216,0.00034405602,0.041194133,0.000030627987,0.000052811716,0.00004613674,0.000030952528,0.0000013333059,0.04515939,0.0000076189035,0.9126066,0.00026729985],"about_ca_topic_score_codex":0.0001040837,"about_ca_topic_score_gemma":0.00018878111,"teacher_disagreement_score":0.7520151,"about_ca_system_score_codex":0.000025387202,"about_ca_system_score_gemma":0.00004465198,"threshold_uncertainty_score":0.9772733},"labels":[],"label_agreement":null},{"id":"W6929819926","doi":"10.5061/dryad.cjsxksn3p","title":"Data from: Identification of intraductal carcinoma of the prostate on tissue specimens using Raman micro-spectroscopy: A diagnostic accuracy case-control study with multicohort validation","year":2020,"lang":"en","type":"dataset","venue":"PolyPublie (École Polytechnique de Montréal)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University Health Network; Centre Hospitalier de l’Université de Montréal; Polytechnique Montréal; Centre hospitalier universitaire de Québec; Université de Montréal","funders":"","keywords":"Prostate; Prostate cancer; Cancer; Carcinoma; Histopathology; Raman spectroscopy","score_opus":0.015309826914703385,"score_gpt":0.262108702605106,"score_spread":0.2467988756904026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929819926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5134497,0.00018417023,0.0016386986,0.00018021329,0.00011067975,0.0018352505,0.48258692,0.000014015322,3.141096e-7],"genre_scores_gemma":[0.7327304,0.00017624687,0.0018976809,0.00009397657,0.00021425118,0.00011377721,0.26471743,0.000051099796,0.000005162176],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99722856,0.0002746906,0.00086116465,0.00095627824,0.00030984587,0.0003694851],"domain_scores_gemma":[0.9956247,0.00011647073,0.001178429,0.0028155774,0.00016452615,0.000100265],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00036320803,0.00047655634,0.0005913454,0.00016430535,0.00013155727,0.00008547286,0.0012991154,0.00055445195,0.000011708103],"category_scores_gemma":[0.00070002774,0.00038288432,0.000092129274,0.00029753553,0.0002176352,0.000015373576,0.0007092085,0.00046867397,0.000003254391],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000555589,0.00059979415,0.0035802706,0.00006831701,0.0003126771,0.0001281275,0.000034980978,0.00017347728,0.9644708,0.00000296414,0.029726578,0.00034644033],"study_design_scores_gemma":[0.0012360752,0.0016666034,0.016313624,0.00008130918,0.00074522215,0.00020732693,0.000091785514,0.0008686206,0.97137123,0.0000133217545,0.006955147,0.00044974074],"about_ca_topic_score_codex":0.0064147376,"about_ca_topic_score_gemma":0.003870945,"teacher_disagreement_score":0.21928065,"about_ca_system_score_codex":0.000094229734,"about_ca_system_score_gemma":0.00033760426,"threshold_uncertainty_score":0.9998623},"labels":[],"label_agreement":null},{"id":"W6929935367","doi":"10.5281/zenodo.10005499","title":"Layers of Meaning: Co-Designing with Bilingual Youth to Unearth their Reading Practices","year":2023,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Reading (process); Shared reading; Extensive reading; Through-the-lens metering; Neuroscience of multilingualism; Data collection; Language acquisition","score_opus":0.04802359526427926,"score_gpt":0.2736369825255252,"score_spread":0.22561338726124594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929935367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98372406,0.000019609543,0.0008925134,0.0003626912,0.0000452761,0.00026479046,0.00014274794,0.00021535066,0.01433299],"genre_scores_gemma":[0.99765456,0.00006998439,0.00057318714,0.00005210601,0.00009526169,2.9753378e-8,0.000940411,0.00038946074,0.00022497305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989998,0.00012355014,0.00015384662,0.00032859942,0.00013940429,0.00025482237],"domain_scores_gemma":[0.9991781,0.000009525305,0.00015757336,0.00031659208,0.00025221662,0.00008599415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048087718,0.00010546849,0.000110030014,0.00015639799,0.00043147398,0.00013321609,0.00044631425,0.00009169392,0.00016566],"category_scores_gemma":[0.0005028641,0.000092461494,0.000027082699,0.00046137383,0.000104526924,0.0000072420667,0.0004926241,0.00010853453,0.00027903405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016734331,0.000029476667,0.000016708229,0.000019672176,0.000049848168,0.0000035530297,0.0011847988,0.00011626376,0.9840234,0.00024387025,0.003771455,0.010373605],"study_design_scores_gemma":[0.00030788057,0.0011257757,0.0001505364,0.000025320971,0.000012477433,0.000029544528,0.0027940026,0.000042530184,0.5410165,0.000017652235,0.45432603,0.0001517349],"about_ca_topic_score_codex":0.000010653857,"about_ca_topic_score_gemma":0.0000010483953,"teacher_disagreement_score":0.45055458,"about_ca_system_score_codex":0.000012680763,"about_ca_system_score_gemma":0.000009438749,"threshold_uncertainty_score":0.37704703},"labels":[],"label_agreement":null},{"id":"W6930055174","doi":"10.5281/zenodo.10778442","title":"SMART-Dal/Ansible-Reproducibility: REDUSE","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Process (computing); Identification (biology); Product (mathematics); Work (physics)","score_opus":0.023484386099348564,"score_gpt":0.24453433785765677,"score_spread":0.22104995175830822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930055174","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0027469362,0.0033131295,0.00031027207,0.0014067579,0.00094339607,0.0008467653,0.0012213673,0.0013896247,0.98782176],"genre_scores_gemma":[0.033455044,0.0027668595,0.00078314514,0.0003122554,0.0026148516,2.4257673e-7,0.011846692,0.020505887,0.927715],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99774724,0.00015324703,0.00022714742,0.0013472625,0.00017504023,0.00035004178],"domain_scores_gemma":[0.99788284,0.000001598024,0.0001033211,0.0017395447,0.00015722858,0.00011545605],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00052972615,0.00024766588,0.00020232412,0.00024215403,0.0002711833,0.0003462857,0.00090309686,0.0005139353,0.009432995],"category_scores_gemma":[0.00037410192,0.000251054,0.000092031565,0.0002749282,0.00023320154,0.0000025049203,0.0017815571,0.00030976487,0.009450955],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027615362,0.000053091127,2.6239746e-7,0.000110411194,0.000103606144,0.0000066573743,0.000024066521,4.796717e-7,0.12700962,0.00025263446,0.84230936,0.030102223],"study_design_scores_gemma":[0.00019339926,0.00026434692,0.000009183768,0.000058943933,0.000033482956,0.000079610145,0.000023050607,0.0000032053752,0.013762116,0.00012067347,0.98517966,0.00027233543],"about_ca_topic_score_codex":0.000025290845,"about_ca_topic_score_gemma":0.0000027616938,"teacher_disagreement_score":0.1428703,"about_ca_system_score_codex":0.00003316647,"about_ca_system_score_gemma":0.0000077162185,"threshold_uncertainty_score":0.99999416},"labels":[],"label_agreement":null},{"id":"W6930064276","doi":"10.5281/zenodo.12370629","title":"loi canadienne sur les droits de la personne pdf","year":2024,"lang":"fr","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"German Federal Republic; Constitution; Acquittal; China","score_opus":0.011080457548004128,"score_gpt":0.20674207277456974,"score_spread":0.1956616152265656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930064276","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.111555845,0.0052760416,0.000594665,0.0023452854,0.0006272171,0.000531998,0.0009829388,0.0002875987,0.87779844],"genre_scores_gemma":[0.4367945,0.0030063253,0.00039101095,0.00016837077,0.0013003746,1.2392292e-7,0.0030083072,0.0053582964,0.5499727],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99777836,0.00041305774,0.0002462675,0.0007513479,0.00013163853,0.0006793126],"domain_scores_gemma":[0.9987764,0.000009806844,0.000114106646,0.00054697035,0.00028090418,0.0002718532],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00055333076,0.00031899218,0.00023980027,0.00022087335,0.0006154241,0.0005882083,0.0009998141,0.0008892499,0.07777427],"category_scores_gemma":[0.0005038372,0.00035176883,0.00011959048,0.00027983534,0.0005592391,0.000004853704,0.0013253562,0.0005402518,0.021161932],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065532644,0.0001562503,0.0000032078858,0.00040005028,0.0003183663,0.000106077256,0.00039432995,0.00000820403,0.41475493,0.01052083,0.4422609,0.13101132],"study_design_scores_gemma":[0.00033100645,0.00047710448,0.000090512105,0.00012730474,0.00006716849,0.00045618773,0.00017781377,0.00005640289,0.007965741,0.00016391625,0.98971653,0.00037029397],"about_ca_topic_score_codex":0.00047875076,"about_ca_topic_score_gemma":0.00009981612,"teacher_disagreement_score":0.54745567,"about_ca_system_score_codex":0.00019242623,"about_ca_system_score_gemma":0.000024083642,"threshold_uncertainty_score":0.9998934},"labels":[],"label_agreement":null},{"id":"W6930074752","doi":"10.5281/zenodo.10395241","title":"Ministriles forzados y esclavos en la galera real (1572-1591)","year":2025,"lang":"es","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Emblem; Quarter (Canadian coin); Range (aeronautics); Variable (mathematics); Power (physics)","score_opus":0.010922132019190178,"score_gpt":0.24663637539849462,"score_spread":0.23571424337930444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930074752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.65077335,0.0014183929,0.0036717947,0.006437511,0.0008403094,0.0014209232,0.0017054406,0.0006618575,0.33307043],"genre_scores_gemma":[0.9884129,0.004375033,0.00033210096,0.00020210023,0.00037509121,1.3098476e-7,0.0026021008,0.00075401645,0.0029464883],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99766403,0.0005268867,0.00037779086,0.00072690577,0.00019390768,0.0005104559],"domain_scores_gemma":[0.99853253,0.000024909103,0.00013551094,0.0007678989,0.0003992956,0.0001398299],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00053227117,0.000282996,0.00025419184,0.00022857812,0.0011463872,0.0008300595,0.0012687327,0.000597531,0.001463354],"category_scores_gemma":[0.00047478132,0.0003080484,0.00012326063,0.00043134615,0.00043789737,0.000010781523,0.002259821,0.0003710669,0.00086543354],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027507055,0.0002617925,0.000029127852,0.00019901813,0.00021853762,0.000019508192,0.00012614079,0.0000066223024,0.76382685,0.011734648,0.087368384,0.1359343],"study_design_scores_gemma":[0.0007267399,0.0005580074,0.0013227041,0.0000694257,0.00004997931,0.0000619158,0.00014514239,0.000056424466,0.06968252,0.00013530125,0.926917,0.0002748098],"about_ca_topic_score_codex":0.000019831314,"about_ca_topic_score_gemma":6.7384013e-7,"teacher_disagreement_score":0.83954865,"about_ca_system_score_codex":0.00007603308,"about_ca_system_score_gemma":0.000026213438,"threshold_uncertainty_score":0.9999372},"labels":[],"label_agreement":null},{"id":"W6930093922","doi":"10.5281/zenodo.10015185","title":"Analysis plan: Layered analysis of fMRI data acquired during attention to heartbeats","year":2023,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Set (abstract data type); Data set; Pattern recognition (psychology); Functional magnetic resonance imaging; Signal processing; Plan (archaeology)","score_opus":0.0441912700475713,"score_gpt":0.2719925516035611,"score_spread":0.22780128155598983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930093922","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962384,0.00002647506,0.001207383,0.0004335895,0.000041484633,0.00016516316,0.0010008292,0.00013882262,0.0007478638],"genre_scores_gemma":[0.97931623,0.00011344245,0.0001353736,0.000029876033,0.000062549065,4.0563975e-8,0.019769266,0.00020144142,0.00037179905],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99872285,0.00012103964,0.00023275636,0.0005005146,0.00017317684,0.00024964893],"domain_scores_gemma":[0.9986374,0.0000039299703,0.00008409499,0.00096489966,0.00021609319,0.00009359801],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003857716,0.00009886391,0.00019920264,0.0007191576,0.00040443227,0.00011817786,0.0009086141,0.00011062107,0.00081937585],"category_scores_gemma":[0.00019426302,0.000105536456,0.00009630786,0.0029201764,0.000062536616,0.000007956184,0.0021565452,0.000049919134,0.0004150043],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009868175,0.00004621447,0.00020878536,0.00001592932,0.0014334405,0.0000032496462,0.000059730402,0.00084537035,0.98429656,0.000029751962,0.007844406,0.005117889],"study_design_scores_gemma":[0.0008319454,0.00060482026,0.20224655,0.000015153904,0.0014666786,0.00001647749,0.0003163772,0.0048477235,0.12600103,0.000011843042,0.66316986,0.00047151253],"about_ca_topic_score_codex":0.000016534408,"about_ca_topic_score_gemma":0.0000062716786,"teacher_disagreement_score":0.8582955,"about_ca_system_score_codex":0.000015412215,"about_ca_system_score_gemma":0.0000025387806,"threshold_uncertainty_score":0.8971591},"labels":[],"label_agreement":null},{"id":"W6930114348","doi":"10.5281/zenodo.10154064","title":"Canadian University of Nigeria, Abuja 2023/2024 Post Utme/Undergraduate/Admission form is Out.☎O803664O134 jupeb form, ijmb form, masters form and Diploma Programme. contact ☎O803664O134☎ for more details on how to purchase the form and register online.","year":2023,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Register (sociolinguistics); Work (physics); Control (management); Hygiene","score_opus":0.01967317446637322,"score_gpt":0.22885729718608872,"score_spread":0.20918412271971548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930114348","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5754459,0.0020890567,0.0053954134,0.1882228,0.0030042378,0.029042007,0.060532276,0.0022311583,0.13403715],"genre_scores_gemma":[0.38695335,0.006191415,0.0022887161,0.002716952,0.0012730698,0.0000038503185,0.018504396,0.011612239,0.57045597],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99801296,0.00006307753,0.00025653493,0.0007423399,0.00023741451,0.0006876965],"domain_scores_gemma":[0.99828815,0.000015979866,0.00023954491,0.0007026475,0.00031146017,0.00044218922],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003249681,0.00038310298,0.00035236837,0.00036073395,0.0008310271,0.00030806646,0.00080487103,0.0005248504,0.00035623653],"category_scores_gemma":[0.00026175551,0.0003315941,0.00012934189,0.0002122649,0.00024537602,0.00002298708,0.000991903,0.0002895546,0.00008701531],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010607279,0.00019285384,0.000036471436,0.00057345856,0.00053865166,0.000033761204,0.0016729091,5.0373427e-7,0.048318703,0.00086819584,0.69135183,0.25535196],"study_design_scores_gemma":[0.0010071069,0.0021011415,0.00019551975,0.00014036441,0.000060348204,0.000037900943,0.0010870821,0.000035107518,0.001751488,0.00013073854,0.9930692,0.00038401943],"about_ca_topic_score_codex":0.0017374799,"about_ca_topic_score_gemma":0.009269411,"teacher_disagreement_score":0.43641886,"about_ca_system_score_codex":0.00014093374,"about_ca_system_score_gemma":0.000047915586,"threshold_uncertainty_score":0.99991363},"labels":[],"label_agreement":null},{"id":"W6930144128","doi":"10.5281/zenodo.10895367","title":"PREreview of \"Giant genes are rare but implicated in cell wall degradation by predatory bacteria\"","year":2024,"lang":"en","type":"peer-review","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Giant Virus; Gene; Bacteria; Phylogenetic tree; Archaea; Open reading frame; Cell wall; Peptide sequence","score_opus":0.024631054105309698,"score_gpt":0.2502424877120381,"score_spread":0.22561143360672842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930144128","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11698132,0.74730086,0.00064674154,0.03995943,0.002865746,0.009409757,0.057399474,0.0010677568,0.024368888],"genre_scores_gemma":[0.05017721,0.49588045,0.0007114725,0.0018610948,0.0009618798,0.0000037140724,0.32281965,0.00623745,0.121347055],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99780625,0.00030233993,0.00057274767,0.00075854076,0.00022571336,0.00033441884],"domain_scores_gemma":[0.9982314,0.0000048876886,0.0003559007,0.00078591355,0.0005236539,0.00009822291],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00046232095,0.00030031332,0.00044169044,0.00016675536,0.00017596026,0.00015044908,0.0010966661,0.0004965252,0.0022020186],"category_scores_gemma":[0.0001856458,0.00029490204,0.00012228248,0.0003525078,0.00013346582,0.000007321188,0.0014032995,0.0003644703,0.00053868286],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019762261,0.0000700983,3.462674e-7,0.0026503652,0.000035665023,0.000003021748,0.0000072837106,4.412608e-7,0.39546564,0.000006982754,0.57398987,0.027750537],"study_design_scores_gemma":[0.00021323851,0.0002507061,0.000042642863,0.00087349257,0.000059651265,0.00003409733,0.000012518071,0.000006648624,0.062227268,0.00000814714,0.93600506,0.00026652723],"about_ca_topic_score_codex":0.000030676936,"about_ca_topic_score_gemma":0.0000040333225,"teacher_disagreement_score":0.36201522,"about_ca_system_score_codex":0.00006709629,"about_ca_system_score_gemma":0.000020959336,"threshold_uncertainty_score":0.9999503},"labels":[],"label_agreement":null},{"id":"W6930218911","doi":"10.5281/zenodo.12081904","title":"Iso 76 pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Certification; Terminology; Scope (computer science); Field (mathematics); Relation (database); Calibration; Bearing (navigation)","score_opus":0.01424074269018504,"score_gpt":0.2288195713019835,"score_spread":0.21457882861179844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930218911","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00034423344,0.0013915406,0.00034041493,0.0004115472,0.00040339146,0.00030107787,0.00044825792,0.0004590684,0.99590045],"genre_scores_gemma":[0.007106101,0.001499718,0.0003024587,0.00018185047,0.0012910839,6.3507336e-8,0.005997041,0.009163236,0.97445846],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99878514,0.000086271444,0.00015343522,0.00055280124,0.00013650034,0.00028587136],"domain_scores_gemma":[0.9991651,9.847478e-7,0.0000785608,0.0005650826,0.000098565644,0.00009170931],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00015784758,0.00019532983,0.00014788867,0.00019474831,0.00023509712,0.0003018601,0.0007701757,0.0004525223,0.042052366],"category_scores_gemma":[0.000091471986,0.00019830785,0.00007336173,0.00018066171,0.00016370999,0.0000015552482,0.0013645504,0.00023857228,0.058110792],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014390306,0.000030216324,6.592033e-8,0.00006813129,0.00007771036,0.000006946788,0.000014223174,2.8050965e-7,0.08997813,0.00035051446,0.8928318,0.016627597],"study_design_scores_gemma":[0.00016499842,0.00026462667,0.000003457769,0.00004543775,0.000022200771,0.000068725676,0.000021844497,0.0000033878796,0.0054884,0.00007435097,0.99361914,0.0002234551],"about_ca_topic_score_codex":0.000011354145,"about_ca_topic_score_gemma":0.0000013838464,"teacher_disagreement_score":0.10078732,"about_ca_system_score_codex":0.00002197015,"about_ca_system_score_gemma":0.0000040529526,"threshold_uncertainty_score":0.9588233},"labels":[],"label_agreement":null},{"id":"W6930243252","doi":"10.5281/zenodo.11991255","title":"Jose silva pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Work (physics); Filter (signal processing); TSG101; Limiting","score_opus":0.01422230312413055,"score_gpt":0.2291592105483025,"score_spread":0.21493690742417193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930243252","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00045661302,0.0014866756,0.0002750117,0.00032537826,0.00042715957,0.00031940476,0.00046701517,0.0004796502,0.99576306],"genre_scores_gemma":[0.00897497,0.0015290179,0.00031101116,0.00018250145,0.0013863336,6.823026e-8,0.00621418,0.009625671,0.97177625],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99876153,0.00009059232,0.00015759973,0.0005581629,0.0001410684,0.0002910585],"domain_scores_gemma":[0.99916434,0.0000010798748,0.00008095599,0.0005751189,0.00008047292,0.000098040626],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016359641,0.00020019716,0.00015109693,0.00020125764,0.0002368987,0.00030959354,0.0007712535,0.00045662274,0.038419228],"category_scores_gemma":[0.00009106781,0.00020333438,0.00007542297,0.00018373656,0.00016673534,0.0000016416851,0.0013873933,0.0002444741,0.045963474],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015815496,0.000033318807,6.3638566e-8,0.000068665955,0.00007747929,0.000008557508,0.00001389736,3.458826e-7,0.102891244,0.00032646852,0.8789396,0.017624501],"study_design_scores_gemma":[0.00017741004,0.0002679602,0.000002985959,0.0000467585,0.000023449866,0.000071277645,0.000019625333,0.0000034203124,0.00638473,0.00007507175,0.99269825,0.00022903255],"about_ca_topic_score_codex":0.000010464088,"about_ca_topic_score_gemma":0.00000135747,"teacher_disagreement_score":0.11375863,"about_ca_system_score_codex":0.000022774595,"about_ca_system_score_gemma":0.000004184668,"threshold_uncertainty_score":0.9624598},"labels":[],"label_agreement":null},{"id":"W6930268637","doi":"10.5281/zenodo.12334440","title":"scale modali pianoforte pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Scale (ratio); Filter (signal processing); Term (time); Ceylon","score_opus":0.012676693735395613,"score_gpt":0.22447108684283307,"score_spread":0.21179439310743745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930268637","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008038304,0.0008089087,0.00042851502,0.0004833781,0.00041171486,0.00036670713,0.0006115366,0.0004943978,0.995591],"genre_scores_gemma":[0.0075550964,0.0011928073,0.00037815562,0.00015607374,0.0011059224,8.7298446e-8,0.006050056,0.0084050875,0.9751567],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986966,0.000081110746,0.00016746536,0.00058651355,0.00015091246,0.000317393],"domain_scores_gemma":[0.99911416,8.2700404e-7,0.00008405354,0.0005945723,0.00010106054,0.00010532967],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016335791,0.0002080192,0.00016336008,0.00020072509,0.00026231052,0.00030537668,0.00077078916,0.00046316866,0.0298898],"category_scores_gemma":[0.00005118892,0.00018991494,0.000081169506,0.00018958436,0.00018736388,0.0000020092486,0.0013353385,0.00022883204,0.039844982],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015906473,0.000034554887,1.6776139e-7,0.00007337568,0.00007411442,0.0000057632606,0.000015595337,4.343418e-7,0.09086261,0.00013342361,0.8821609,0.026623178],"study_design_scores_gemma":[0.00018320266,0.00024881214,0.0000057492057,0.00004976243,0.000025764934,0.00007059434,0.000021222668,0.0000052994706,0.00897768,0.00008669979,0.99008614,0.00023906477],"about_ca_topic_score_codex":0.000014468382,"about_ca_topic_score_gemma":0.0000024346532,"teacher_disagreement_score":0.10792527,"about_ca_system_score_codex":0.000024473802,"about_ca_system_score_gemma":0.000004571816,"threshold_uncertainty_score":0.97099704},"labels":[],"label_agreement":null},{"id":"W6930307579","doi":"10.5281/zenodo.10849969","title":"CO2 cool (fortran version)","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Fortran; Atmosphere (unit); Work (physics); Atmospheric pressure","score_opus":0.010888375287285262,"score_gpt":0.21996700091639979,"score_spread":0.20907862562911453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930307579","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000985092,0.0005292182,0.0009927021,0.00041114475,0.00036143098,0.00046220643,0.0012589553,0.0004793084,0.99451995],"genre_scores_gemma":[0.035542715,0.0035411494,0.0007259011,0.00061370054,0.001230731,1.2438323e-7,0.027455347,0.009153612,0.9217367],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988687,0.00009876145,0.00015304759,0.00047308265,0.0001338587,0.0002725538],"domain_scores_gemma":[0.9990871,0.0000019854594,0.000096632444,0.00056790124,0.0001616912,0.00008466478],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00013774575,0.00018368394,0.00015901985,0.0001935403,0.00044052652,0.00016451182,0.0008369529,0.00045147003,0.018277355],"category_scores_gemma":[0.00013141557,0.00019507774,0.000068257665,0.0001790683,0.00016366757,0.0000018133534,0.0011086257,0.00019640157,0.00310825],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005090919,0.00004788638,3.5076337e-7,0.000047091096,0.00007799219,0.000003656522,0.000007251919,9.83509e-7,0.056609906,0.00047164067,0.92118776,0.021494579],"study_design_scores_gemma":[0.00036231655,0.00025031538,0.000020957743,0.00004093618,0.000021597061,0.000020853888,0.000019678124,0.0000035471774,0.008758472,0.00001896004,0.9902822,0.00020019968],"about_ca_topic_score_codex":0.000020859496,"about_ca_topic_score_gemma":0.0000017723847,"teacher_disagreement_score":0.072783224,"about_ca_system_score_codex":0.000024626834,"about_ca_system_score_gemma":0.000009060839,"threshold_uncertainty_score":0.99766797},"labels":[],"label_agreement":null},{"id":"W6930483008","doi":"10.5281/zenodo.12778573","title":"FIG. 3 in Allostratigraphy And Biostratigraphy Of The Upper Cretaceous (Coniacian-Santonian) Western Canada Foreland Basin","year":2017,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Western University","funders":"","keywords":"Biostratigraphy; Foreland basin; Cretaceous; Structural basin; Chronostratigraphy","score_opus":0.010539986519841841,"score_gpt":0.2084422520547685,"score_spread":0.19790226553492665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930483008","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.38262367,0.0053169797,0.000080414866,0.0027956988,0.0006833882,0.002084815,0.0046273405,0.00016879136,0.6016189],"genre_scores_gemma":[0.9663199,0.0030451987,0.00012370257,0.0001599264,0.0002188314,1.5798092e-7,0.0012283421,0.0020938173,0.026810125],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989862,0.00011817851,0.00016817023,0.00035804402,0.00014024889,0.00022914863],"domain_scores_gemma":[0.9990463,0.0000024049925,0.00020318925,0.0006092166,0.0000774524,0.000061386505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012972733,0.00017648235,0.00018882421,0.0001260205,0.00030238504,0.00012465137,0.0007853208,0.00029575842,0.00045065285],"category_scores_gemma":[0.000083033396,0.0001484071,0.000052961383,0.00011073199,0.0003138263,0.000003098896,0.0005465741,0.00018797159,0.000010448033],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012416946,0.000121449484,0.0025758701,0.00029307438,0.0003098941,0.000017401855,0.00011093798,0.0000020069192,0.15580314,0.00023380955,0.80493194,0.03547627],"study_design_scores_gemma":[0.00031920735,0.00015150294,0.008657872,0.00008880436,0.000013414494,0.000033387354,0.000015929088,0.0000018703536,0.0067576533,0.000010860536,0.9837854,0.00016408194],"about_ca_topic_score_codex":0.0069931666,"about_ca_topic_score_gemma":0.029379802,"teacher_disagreement_score":0.5836962,"about_ca_system_score_codex":0.000012112475,"about_ca_system_score_gemma":0.000024342515,"threshold_uncertainty_score":0.99961936},"labels":[],"label_agreement":null},{"id":"W6930541266","doi":"10.5281/zenodo.14597113","title":"Cosmocomoidea annulicornis Ogloblin 1936","year":2024,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Natural Resources Canada","funders":"","keywords":"Parasitism; Larva; Host (biology); Parasite hosting; Interspecific competition","score_opus":0.01798857294969151,"score_gpt":0.23910771735537675,"score_spread":0.22111914440568525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930541266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8502905,0.0029728133,0.0123512,0.005740996,0.0011974011,0.0010889595,0.0013212297,0.0019475917,0.12308934],"genre_scores_gemma":[0.99410266,0.00043695368,0.00029148266,0.00018365498,0.00039641673,5.4970926e-8,0.0023972266,0.0007195127,0.0014720482],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99894404,0.000097288386,0.00015940957,0.00041512464,0.000116952404,0.00026719188],"domain_scores_gemma":[0.99933285,0.0000035431926,0.00002958597,0.0003680356,0.00017182111,0.00009414314],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002710412,0.00011803277,0.000087832916,0.000109638895,0.0005353298,0.0004963607,0.0005678233,0.00015394807,0.0019321904],"category_scores_gemma":[0.00012961408,0.00011796071,0.00005544305,0.0002698609,0.00013206658,0.0000068065556,0.00083793607,0.00015965679,0.0027378022],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036404483,0.000042308722,0.0000014867147,0.00003418774,0.000044709996,0.000011338623,0.000043701268,0.000007405723,0.6919469,0.0018540986,0.1585496,0.14742784],"study_design_scores_gemma":[0.00015655503,0.00032410977,0.00010857921,0.000013415645,0.000008466573,0.00012335269,0.000032693795,0.000083883984,0.061319385,0.00014277673,0.9375501,0.00013663391],"about_ca_topic_score_codex":0.000005385242,"about_ca_topic_score_gemma":3.616131e-7,"teacher_disagreement_score":0.7790005,"about_ca_system_score_codex":0.000027347023,"about_ca_system_score_gemma":0.000005205002,"threshold_uncertainty_score":0.99898016},"labels":[],"label_agreement":null},{"id":"W6930559071","doi":"10.5281/zenodo.13335742","title":"♥╣[-_-]╠♥ +91-8094774404 ♥╣[-_-]╠♥ Get Back My Ex Husband Wife After Divorce Separation","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Circumstantial evidence; Pretext; Wife; Subject (documents); TSG101; Gloom","score_opus":0.014146771567801414,"score_gpt":0.24365875313572866,"score_spread":0.22951198156792724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930559071","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00478483,0.0036260982,0.0014175543,0.00076840504,0.0008709478,0.0010477137,0.0013647699,0.00079147785,0.9853282],"genre_scores_gemma":[0.08274567,0.00251804,0.0006743195,0.00047596297,0.0025617396,5.4019694e-7,0.013017245,0.013231613,0.88477486],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980039,0.00016780732,0.00028456294,0.00086920714,0.00024045585,0.00043408683],"domain_scores_gemma":[0.9987332,0.000002363713,0.00014351969,0.000799879,0.00017169007,0.00014930477],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00023624033,0.00034290925,0.00024843213,0.00026001164,0.00025573737,0.0005317742,0.0008094262,0.0006725682,0.023272347],"category_scores_gemma":[0.00008755306,0.00034718117,0.0001148106,0.0002584022,0.00025232986,0.000006681351,0.0014577882,0.00033496346,0.024576357],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008281431,0.000057542475,6.909897e-7,0.00015405809,0.00013027605,0.000011096998,0.000059815146,0.0000016463886,0.08334502,0.00017039437,0.90809005,0.007896611],"study_design_scores_gemma":[0.00033078957,0.0003807868,0.00002043804,0.00008889757,0.00004401923,0.00006122419,0.000027153552,0.000011781205,0.0069710948,0.00006681043,0.99160326,0.0003937619],"about_ca_topic_score_codex":0.00001843268,"about_ca_topic_score_gemma":0.0000060174107,"teacher_disagreement_score":0.100553334,"about_ca_system_score_codex":0.00004407321,"about_ca_system_score_gemma":0.000008798224,"threshold_uncertainty_score":0.999898},"labels":[],"label_agreement":null},{"id":"W6931048190","doi":"10.5281/zenodo.3672010","title":"Fig. 3 in A new tyrannosaurine (Theropoda:Tyrannosauridae) from the Campanian Foremost Formation of Alberta, Canada, provides insight into the evolution and biogeography of tyrannosaurids","year":2020,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Shore; Holotype; Type locality; Cliff; Provenance; Section (typography)","score_opus":0.007769262082518986,"score_gpt":0.18853195790306562,"score_spread":0.18076269582054663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931048190","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6786649,0.029599236,0.0049887258,0.047658548,0.0012480946,0.010550708,0.009136034,0.0004978361,0.21765587],"genre_scores_gemma":[0.9887399,0.0015391214,0.00027103492,0.00025112892,0.00039236576,2.5530727e-7,0.0046290383,0.0012508803,0.0029262928],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988153,0.00017853665,0.0003124151,0.00031866034,0.00018787474,0.00018719528],"domain_scores_gemma":[0.99909586,0.000013489349,0.0002702983,0.00044084518,0.00011520961,0.00006432017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013787457,0.00018489255,0.00021251511,0.000118847944,0.00021840773,0.00006123217,0.00072684773,0.00021470115,0.0004962997],"category_scores_gemma":[0.0002005343,0.00013429225,0.000051663785,0.00038167543,0.00027460916,0.0000070608558,0.0006208085,0.00018696289,0.000015261345],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004149018,0.000114455936,0.00020580261,0.0003018314,0.00030000808,0.0000040442196,0.0032005988,0.000012488083,0.34490734,0.0010721949,0.5899124,0.05955394],"study_design_scores_gemma":[0.00045836877,0.0002459741,0.0015079562,0.00008084874,0.000029537534,0.0000071333857,0.0002480602,0.000035033045,0.010076435,0.00007215042,0.9870915,0.00014703318],"about_ca_topic_score_codex":0.21308522,"about_ca_topic_score_gemma":0.08220153,"teacher_disagreement_score":0.39717907,"about_ca_system_score_codex":0.000035864305,"about_ca_system_score_gemma":0.00005367549,"threshold_uncertainty_score":0.9345459},"labels":[],"label_agreement":null},{"id":"W6931322950","doi":"10.5281/zenodo.3789188","title":"Abrostolini Eichlin &amp; Cunningham 1978","year":2010,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Canadian Food Inspection Agency; Royal Alberta Museum; Calgary Laboratory Services; Natural Resources Canada","funders":"","keywords":"Limiting; Watercraft; Culpability","score_opus":0.01873377659482778,"score_gpt":0.24803411327252808,"score_spread":0.2293003366777003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931322950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9538279,0.00008236104,0.0010637466,0.00088282675,0.0004169092,0.00026239146,0.00015442402,0.00028400758,0.043025434],"genre_scores_gemma":[0.9935948,0.00011779481,0.0013075145,0.00020324039,0.0004877132,4.343904e-8,0.0022268186,0.00054355286,0.0015184974],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989132,0.00007391227,0.00017801115,0.00039807905,0.00012956397,0.0003072246],"domain_scores_gemma":[0.99895954,0.0000034373365,0.00007200165,0.00057172566,0.00027013675,0.00012316371],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00031896096,0.00012738642,0.00010096264,0.00008941166,0.0007749991,0.00024295658,0.0007478782,0.00023698648,0.0033258449],"category_scores_gemma":[0.00037265779,0.0001314544,0.000052401967,0.00017682085,0.00020958051,0.000005471879,0.0009508978,0.00029982408,0.0025417856],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004361217,0.00005893969,0.000009102992,0.000007807736,0.00001893164,0.0000016486065,0.000045296358,0.0000026957805,0.9150724,0.00092928385,0.050263554,0.033546727],"study_design_scores_gemma":[0.0002901107,0.00019803719,0.0004523898,0.0000034613772,0.000006073108,0.0001045164,0.000018665498,0.0000093139215,0.08130647,0.00007824626,0.9173817,0.00015101988],"about_ca_topic_score_codex":0.000007702153,"about_ca_topic_score_gemma":0.0000033370723,"teacher_disagreement_score":0.8671181,"about_ca_system_score_codex":0.000009931399,"about_ca_system_score_gemma":0.000004606301,"threshold_uncertainty_score":0.99823487},"labels":[],"label_agreement":null},{"id":"W6931380189","doi":"10.5281/zenodo.4298220","title":"Fig. 39 in The 'red-tailed' Lasioglossum (Dialictus) (Hymenoptera: Halictidae) of the western Nearctic","year":2020,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Nearctic ecozone; Scale (ratio); Dorsum; Taxonomy (biology)","score_opus":0.017072906966475274,"score_gpt":0.22491696257922528,"score_spread":0.20784405561275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931380189","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.030141868,0.0013988403,0.00025144324,0.012585947,0.0008403693,0.0027849835,0.001526583,0.00040619847,0.95006377],"genre_scores_gemma":[0.9277819,0.0015909334,0.00014252629,0.0015817902,0.0012663836,5.0628626e-7,0.0026703423,0.0051586106,0.05980703],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984873,0.00036378077,0.0002410271,0.00041105933,0.00022994324,0.00026690264],"domain_scores_gemma":[0.9989033,0.000004765721,0.00018950435,0.00076644204,0.00008301964,0.000053012187],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00024297759,0.00019548992,0.00019436331,0.00009968693,0.0002771082,0.00016459268,0.0016812648,0.00031804034,0.0020527104],"category_scores_gemma":[0.00018577013,0.00013929915,0.0000869971,0.00033318248,0.0002509072,0.0000029116566,0.0013662252,0.00031880502,0.00041049227],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007843122,0.00014333345,0.00006633442,0.00013732094,0.00012267152,0.0000080423215,0.00037443667,0.0000051169764,0.1195267,0.00035606,0.8678734,0.011308183],"study_design_scores_gemma":[0.00033130433,0.00025771148,0.0006643542,0.000046556215,0.000020241792,0.000030056433,0.000048301656,0.0000045694906,0.0040254043,0.00001690538,0.9944073,0.00014732756],"about_ca_topic_score_codex":0.000055181463,"about_ca_topic_score_gemma":0.000011629175,"teacher_disagreement_score":0.89764,"about_ca_system_score_codex":0.00001966774,"about_ca_system_score_gemma":0.000008289932,"threshold_uncertainty_score":0.9988595},"labels":[],"label_agreement":null},{"id":"W6931552909","doi":"10.5281/zenodo.6109916","title":"Vicinaxonopsis Cook 1974","year":2015,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Seta; Dorsum; Hook; Shield; Bristle; Ridge","score_opus":0.03273627488433525,"score_gpt":0.2381768563988474,"score_spread":0.20544058151451214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931552909","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8433765,0.0004948734,0.0043143095,0.0024546057,0.00042007148,0.00058492826,0.00022624775,0.00053290767,0.14759555],"genre_scores_gemma":[0.9956525,0.00011991297,0.00050130306,0.0002354024,0.00029853362,3.396752e-8,0.0014494434,0.00052881014,0.0012140586],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99907213,0.000106179796,0.00013877428,0.000309039,0.00012936721,0.00024451304],"domain_scores_gemma":[0.9990644,0.0000017024852,0.000052349813,0.00038804754,0.00034525065,0.00014827213],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00029944282,0.000101538055,0.000088954825,0.000072196766,0.00043094193,0.00017668151,0.0005653677,0.0001365905,0.00084104965],"category_scores_gemma":[0.00019546358,0.000103365586,0.00003409546,0.00017352602,0.00012867188,0.000004962361,0.0008616223,0.00010458386,0.0017916481],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014709544,0.00011359848,0.000009960728,0.000014879654,0.000059847924,0.0000064519963,0.00012783178,0.000022770857,0.6807428,0.0011501977,0.25163084,0.06597374],"study_design_scores_gemma":[0.0004062506,0.00050566916,0.00013104155,0.0000039131523,0.000008092697,0.00007568411,0.00008972939,0.000023939,0.052981287,0.00007382903,0.94557524,0.00012532044],"about_ca_topic_score_codex":0.000007006936,"about_ca_topic_score_gemma":4.8300694e-7,"teacher_disagreement_score":0.6939444,"about_ca_system_score_codex":0.0000321608,"about_ca_system_score_gemma":0.0000053974222,"threshold_uncertainty_score":0.9989856},"labels":[],"label_agreement":null},{"id":"W6931728439","doi":"10.5281/zenodo.999670","title":"Effects of Adjunctive Human Transferrin on Susceptibility and Emergence of Resistance in Gram-negative Pathogens","year":2017,"lang":"en","type":"dissertation","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Optech (Canada)","funders":"","keywords":"Antibiotics; Transferrin; Virulence; Phagocytosis; Bacteria; Antimicrobial; Antibiotic resistance; Drug resistance; Combination therapy","score_opus":0.013456964946824046,"score_gpt":0.2529425018338355,"score_spread":0.23948553688701144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931728439","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898478,0.00025236642,0.00001878031,0.00002245699,0.00007627325,0.0004730053,0.00031049154,0.000017165203,0.008981695],"genre_scores_gemma":[0.9964843,0.00056154147,0.000050638595,0.0000045099573,0.00003243705,1.3685454e-7,0.0020781814,0.000263637,0.0005246305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988081,0.00018577001,0.0002605774,0.00044128238,0.00013652226,0.00016773916],"domain_scores_gemma":[0.999,0.000009286707,0.00021440373,0.00040811507,0.00032272702,0.000045458553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024263856,0.0001558549,0.00023525185,0.00012546535,0.0003126909,0.000034215678,0.00048306104,0.0002748454,0.00017930685],"category_scores_gemma":[0.00045515192,0.00016351187,0.000053655465,0.00010493361,0.00023093767,0.0000044179947,0.0001447776,0.00019068718,0.000007660273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046895925,0.00013906379,0.000009266423,0.00043557858,0.00004009398,0.000002793151,0.00048701355,8.871909e-7,0.98763275,0.00045871933,0.0006927787,0.009632084],"study_design_scores_gemma":[0.0007951527,0.0013895424,0.029299894,0.00021966701,0.00003049001,0.0000017412498,0.0003002677,0.0000013778536,0.94722164,0.0004515807,0.020065144,0.00022348913],"about_ca_topic_score_codex":0.000029668963,"about_ca_topic_score_gemma":0.000100332865,"teacher_disagreement_score":0.04041111,"about_ca_system_score_codex":0.000014941984,"about_ca_system_score_gemma":0.0000066244893,"threshold_uncertainty_score":0.666782},"labels":[],"label_agreement":null},{"id":"W6931759044","doi":"10.5281/zenodo.4820668","title":"URGENT DEATH SPELLCASTERS. I NEED INSTANT BLACK MAGIC REVENGE DEATH SPELLS CASTER CONTACT +2348141263228 DR GARUBA DEATH SPELLS CASTING SPECIALIST","year":2021,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Spell; MAGIC (telescope); Wife; Afterlife; Curse","score_opus":0.04160066761453426,"score_gpt":0.24868637841617303,"score_spread":0.20708571080163876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931759044","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7079755,0.00052761333,0.0014445822,0.0014687983,0.00044681318,0.00071542384,0.0005462856,0.000097809716,0.2867772],"genre_scores_gemma":[0.9664688,0.0011479927,0.001061655,0.000762959,0.001080429,1.8607684e-8,0.002303706,0.0012228333,0.025951596],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99721,0.00035500113,0.0005052334,0.00089567906,0.0003232125,0.0007108612],"domain_scores_gemma":[0.9980309,0.000012607051,0.00021142255,0.00085240416,0.0005538571,0.00033878573],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000442514,0.00035200064,0.000332888,0.0001530917,0.0003546122,0.00059970835,0.00077073806,0.00029963048,0.018921753],"category_scores_gemma":[0.0003729682,0.00037106397,0.00015088287,0.00033516836,0.00014294259,0.00001989054,0.0016054291,0.00036140694,0.01796958],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026080885,0.00028745484,0.00012384134,0.00010083002,0.00017178229,0.00037026854,0.00026385896,0.000035374684,0.94131726,0.0019022762,0.05002262,0.0051436103],"study_design_scores_gemma":[0.00084695854,0.0005086424,0.00088850374,0.000052586973,0.000043499767,0.0005193471,0.00026092696,0.00008291427,0.14021073,0.000059503178,0.8561322,0.00039415402],"about_ca_topic_score_codex":0.000023585722,"about_ca_topic_score_gemma":0.000007288664,"teacher_disagreement_score":0.8061096,"about_ca_system_score_codex":0.00011471476,"about_ca_system_score_gemma":0.00003618791,"threshold_uncertainty_score":0.9998741},"labels":[],"label_agreement":null},{"id":"W6931775820","doi":"10.5281/zenodo.7091048","title":"Revising Sex and Gender in the TEI Guidelines","year":2022,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Normative; Representation (politics); Narrative; Equivalence (formal languages); Blame; Coding (social sciences); Best practice; Digital divide","score_opus":0.05429788885227966,"score_gpt":0.27513530397868174,"score_spread":0.2208374151264021,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931775820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9785116,0.0009723528,0.00047727025,0.0035985273,0.00008787694,0.00037972792,0.0001009309,0.00008034508,0.015791373],"genre_scores_gemma":[0.9978708,0.000281935,0.00019521607,0.0006047845,0.000113498354,6.750975e-8,0.00047426467,0.00020813946,0.0002513024],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.999146,0.00023417521,0.0001301119,0.0002258707,0.00011249047,0.00015138702],"domain_scores_gemma":[0.9996009,0.0000032426074,0.00003671583,0.000251908,0.00008231724,0.00002493275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00065356225,0.00006243745,0.000055330653,0.00007364326,0.0008378528,0.00013373383,0.00046233443,0.000041185223,0.00063856825],"category_scores_gemma":[0.00017316783,0.000054371536,0.000017344848,0.00016926997,0.00007034506,0.0000026627913,0.0011421103,0.00013365792,0.000035525016],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006266457,0.00008544195,0.000029061137,0.00002664173,0.000025794674,0.000011056314,0.0008425202,0.00007023798,0.74587554,0.0015407582,0.11307659,0.13835372],"study_design_scores_gemma":[0.00019291716,0.00018249649,0.0003546724,0.0000016436948,0.0000034460604,0.00015288295,0.00036295177,0.00005409488,0.0027094528,0.00017272802,0.9957395,0.00007319909],"about_ca_topic_score_codex":0.000004340144,"about_ca_topic_score_gemma":2.411989e-7,"teacher_disagreement_score":0.88266295,"about_ca_system_score_codex":0.000013330388,"about_ca_system_score_gemma":0.0000021519652,"threshold_uncertainty_score":0.69918746},"labels":[],"label_agreement":null},{"id":"W6931876022","doi":"10.5683/sp3/q6olo7","title":"Residential Telephone Service Survey November, 1997 [Canada]","year":2023,"lang":"en","type":"dataset","venue":"Borealis","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Telephone survey; Phone; Popularity; Survey data collection; Service (business); Survey methodology; Telephone call; Mobile radio telephone","score_opus":0.013054713883321621,"score_gpt":0.23926483464633666,"score_spread":0.22621012076301503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931876022","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002497753,0.0002237811,0.0000024148947,0.0005003615,0.0010244348,0.0002013124,0.9955004,0.000025796087,0.00002376298],"genre_scores_gemma":[0.00009718847,0.0015632323,0.00002428134,0.0011185112,0.0010302867,0.000026514346,0.99574023,0.000061196224,0.00033856503],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99800617,0.00012096397,0.00039059197,0.00070940075,0.00028984714,0.00048305604],"domain_scores_gemma":[0.998139,0.000024328794,0.00021786489,0.0012815453,0.00020634053,0.00013090271],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027633502,0.00039290247,0.00038072767,0.00008099787,0.000090514106,0.000055014294,0.00089251826,0.0011771448,0.000031289044],"category_scores_gemma":[0.00020702292,0.00039566058,0.00008589699,0.00026881826,0.00006813116,0.000001143762,0.0006684382,0.00029577897,0.000069236936],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000084145286,0.00002971315,0.000014406996,0.000053251013,0.00013107128,0.000033178796,7.896561e-7,0.0000020951863,0.009649017,5.342263e-7,0.98988116,0.000120633864],"study_design_scores_gemma":[0.00029857786,0.000108679065,0.004749829,0.00001886743,0.00005001382,0.000014803559,0.0000049764285,9.516165e-7,0.011517742,0.0000063435023,0.98277515,0.0004540797],"about_ca_topic_score_codex":0.9770001,"about_ca_topic_score_gemma":0.99892247,"teacher_disagreement_score":0.021922318,"about_ca_system_score_codex":0.000037924252,"about_ca_system_score_gemma":0.00090083474,"threshold_uncertainty_score":0.9998495},"labels":[],"label_agreement":null},{"id":"W6939425074","doi":"10.6084/m9.figshare.13889091.v1","title":"Additional file 1 of Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Klebsiella pneumoniae; Transcriptional regulation; Zinc; Bacteria; Quantitative proteomics; Capsule; Quantitative analysis (chemistry); Regulation of gene expression; Proteomics","score_opus":0.016431210941243956,"score_gpt":0.22301619264519162,"score_spread":0.20658498170394768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6939425074","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.27228075,0.000080281854,0.0000024885044,0.000124172,0.000014505363,0.00020458728,0.7272466,0.00000642663,0.00004023363],"genre_scores_gemma":[0.25276428,0.000017521907,0.0007731324,0.000016274944,0.000024595018,0.00034615825,0.7458211,0.0000071389113,0.00022976888],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928653,0.000045584904,0.00021127543,0.00026596303,0.0000909067,0.00009974364],"domain_scores_gemma":[0.9994742,0.000027174903,0.00014592272,0.0000857398,0.00024648992,0.00002047308],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000029406448,0.00009143729,0.000101604724,0.000040615316,0.00003679332,0.000011866974,0.000045143326,0.00021347914,0.108866386],"category_scores_gemma":[0.00077417854,0.000101193,0.000030086765,0.00014800958,0.000024517403,0.000011485905,0.000012241019,0.00006606945,0.000008264113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015320973,0.000060480863,0.000020272875,0.000030203013,0.000013028274,3.6911345e-7,0.000038629976,0.000027097856,0.7318829,0.0000045087054,0.26762268,0.00028447955],"study_design_scores_gemma":[0.00044937257,0.000317729,0.10844725,0.0006843682,0.000011862382,0.000010100252,0.0001235066,0.00040672312,0.786853,0.00015726386,0.10227308,0.00026573203],"about_ca_topic_score_codex":0.0000036290535,"about_ca_topic_score_gemma":0.00013573814,"teacher_disagreement_score":0.16534962,"about_ca_system_score_codex":0.000015288657,"about_ca_system_score_gemma":0.00012325204,"threshold_uncertainty_score":0.8919482},"labels":[],"label_agreement":null},{"id":"W6939667922","doi":"10.6084/m9.figshare.29662657.v1","title":"Additional file 1 of The environmental adaptation of acidophilic archaea: promotion of horizontal gene transfer by genomic islands","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Horizontal gene transfer; Adaptation (eye); Gene transfer; Promotion (chess); Gene; Biodiversity","score_opus":0.007561238491548047,"score_gpt":0.184217766519428,"score_spread":0.17665652802787996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6939667922","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015153508,0.00015792118,5.433269e-7,0.000008525409,0.000038399277,0.00023566099,0.9980325,0.0000014561351,0.000009621457],"genre_scores_gemma":[0.003739789,0.00006012149,0.000033207474,0.00001114659,0.0000821913,0.00018196725,0.9958001,0.0000073689366,0.00008415295],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99923164,0.00003636655,0.00027100992,0.00023536272,0.00012012269,0.00010549296],"domain_scores_gemma":[0.99939156,0.00002649116,0.00018779784,0.00034528927,0.0000317557,0.000017117103],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000013160764,0.00015474154,0.00019596137,0.00004163071,0.000023558736,0.0000023316172,0.0003310109,0.00049527345,0.5248068],"category_scores_gemma":[0.000104227576,0.00013099384,0.00014964111,0.00005282341,0.000054543976,0.0000012951614,0.0001877517,0.000118061456,0.0000063862713],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019731022,0.000075160475,2.4834537e-7,0.0001176695,0.000048392267,1.5652303e-7,0.0000027584883,0.0000011623061,0.22133152,3.210085e-8,0.7780247,0.0003784797],"study_design_scores_gemma":[0.00013479739,0.00030943385,0.00016176955,0.00027781056,0.000020459598,0.0000027777876,0.0000047877543,0.000003934343,0.20269726,0.0000014738067,0.796296,0.00008948082],"about_ca_topic_score_codex":0.0000053520016,"about_ca_topic_score_gemma":0.00002858391,"teacher_disagreement_score":0.5248004,"about_ca_system_score_codex":0.000012383183,"about_ca_system_score_gemma":0.00013683995,"threshold_uncertainty_score":0.53417736},"labels":[],"label_agreement":null},{"id":"W6958072780","doi":"10.6084/m9.figshare.13889091","title":"Additional file 1 of Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Klebsiella pneumoniae; Transcriptional regulation; Zinc; Bacteria; Quantitative proteomics; Capsule; Quantitative analysis (chemistry); Regulation of gene expression; Proteomics","score_opus":0.016431210941243956,"score_gpt":0.22301619264519162,"score_spread":0.20658498170394768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958072780","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.27228075,0.000080281854,0.0000024885044,0.000124172,0.000014505363,0.00020458728,0.7272466,0.00000642663,0.00004023363],"genre_scores_gemma":[0.25276428,0.000017521907,0.0007731324,0.000016274944,0.000024595018,0.00034615825,0.7458211,0.0000071389113,0.00022976888],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928653,0.000045584904,0.00021127543,0.00026596303,0.0000909067,0.00009974364],"domain_scores_gemma":[0.9994742,0.000027174903,0.00014592272,0.0000857398,0.00024648992,0.00002047308],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000029406448,0.00009143729,0.000101604724,0.000040615316,0.00003679332,0.000011866974,0.000045143326,0.00021347914,0.108866386],"category_scores_gemma":[0.00077417854,0.000101193,0.000030086765,0.00014800958,0.000024517403,0.000011485905,0.000012241019,0.00006606945,0.000008264113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015320973,0.000060480863,0.000020272875,0.000030203013,0.000013028274,3.6911345e-7,0.000038629976,0.000027097856,0.7318829,0.0000045087054,0.26762268,0.00028447955],"study_design_scores_gemma":[0.00044937257,0.000317729,0.10844725,0.0006843682,0.000011862382,0.000010100252,0.0001235066,0.00040672312,0.786853,0.00015726386,0.10227308,0.00026573203],"about_ca_topic_score_codex":0.0000036290535,"about_ca_topic_score_gemma":0.00013573814,"teacher_disagreement_score":0.16534962,"about_ca_system_score_codex":0.000015288657,"about_ca_system_score_gemma":0.00012325204,"threshold_uncertainty_score":0.8919482},"labels":[],"label_agreement":null},{"id":"W6958225018","doi":"10.60692/e8zcg-0e713","title":"Profiling cell envelope-antibiotic interactions reveals vulnerabilities to β-lactams in a multidrug-resistant bacterium","year":2023,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Burkholderia cenocepacia; Peptidoglycan; Bacteria; Aztreonam; Mutant; Antibiotics; Burkholderia; Antibiotic resistance; Cell envelope","score_opus":0.020021609076343667,"score_gpt":0.22651906990460927,"score_spread":0.2064974608282656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958225018","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99724185,0.000002300091,0.0005187541,0.00015656087,0.0005552805,0.0005308823,0.00016471378,0.00010178797,0.00072786905],"genre_scores_gemma":[0.9982044,0.0000010513693,0.00075072143,0.00010974657,0.00010200277,0.00007309916,0.00017659932,0.000016955717,0.00056540675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986049,0.000071102506,0.0005998445,0.00025682113,0.00011917535,0.00034813685],"domain_scores_gemma":[0.9992401,0.0000047632575,0.00015486914,0.00040707894,0.00011057076,0.0000826177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033097994,0.00019402572,0.00021664512,0.0003602353,0.00008537518,0.000097177035,0.00020205397,0.00020057861,0.0000076207702],"category_scores_gemma":[0.000049284492,0.00017398525,0.00006637649,0.00037286582,0.000029765228,0.000021008076,0.00019063448,0.000108561064,0.0004778288],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004011317,0.000014963219,0.07738527,0.0008645305,0.000054377524,0.000009887177,0.011513987,0.00043821384,0.9080837,0.00008960342,0.0005320974,0.0006122427],"study_design_scores_gemma":[0.0012235929,0.00030244933,0.094329044,0.00022549399,0.000018275405,0.000029611225,0.015115904,0.00075627293,0.87853116,0.0000013880621,0.008857571,0.00060921855],"about_ca_topic_score_codex":0.000010750872,"about_ca_topic_score_gemma":0.000005017729,"teacher_disagreement_score":0.029552521,"about_ca_system_score_codex":0.000060096743,"about_ca_system_score_gemma":0.00004416111,"threshold_uncertainty_score":0.70949125},"labels":[],"label_agreement":null},{"id":"W6958293527","doi":"10.6084/m9.figshare.13889094.v1","title":"Additional file 2 of Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Klebsiella pneumoniae; Zinc; Transcriptional regulation; Bacteria; Quantitative proteomics; Capsule; Quantitative analysis (chemistry); Regulation of gene expression; Proteomics","score_opus":0.01593076865884924,"score_gpt":0.22259232286348524,"score_spread":0.206661554204636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958293527","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.27203137,0.00008148705,0.00000245332,0.00012399621,0.0000146089005,0.0002048373,0.72749376,0.000006442172,0.000041049396],"genre_scores_gemma":[0.2510638,0.000017914503,0.0007614189,0.000016307436,0.000024925774,0.00034166634,0.747536,0.0000071450977,0.00023080682],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928665,0.00004557291,0.00021134887,0.00026580834,0.00009088905,0.00009971511],"domain_scores_gemma":[0.9994749,0.000026876447,0.00014608109,0.000085612046,0.00024606462,0.000020470752],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000029281822,0.00009141473,0.00010162402,0.00004059469,0.000036795413,0.00001188695,0.00004512383,0.00021348009,0.10744292],"category_scores_gemma":[0.00076692476,0.00010116733,0.00003008225,0.00014792032,0.000024517141,0.00001149201,0.000012239683,0.00006605765,0.000008195629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015330395,0.000060759543,0.00001986848,0.00003056304,0.000013091712,3.787594e-7,0.0000388432,0.000027331078,0.7329341,0.0000045923575,0.2665631,0.00029204017],"study_design_scores_gemma":[0.00045235548,0.00031819066,0.10728498,0.0006787064,0.000011844688,0.000010131016,0.00012268957,0.0004051478,0.78497994,0.00015844357,0.1053119,0.00026565016],"about_ca_topic_score_codex":0.0000036573938,"about_ca_topic_score_gemma":0.0001363609,"teacher_disagreement_score":0.16125119,"about_ca_system_score_codex":0.000015292055,"about_ca_system_score_gemma":0.00012282634,"threshold_uncertainty_score":0.893373},"labels":[],"label_agreement":null},{"id":"W6958450458","doi":"10.6084/m9.figshare.19350018.v1","title":"Additional file 3 of The cellular response to drug perturbation is limited: comparison of large-scale chemogenomic fitness signatures","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Drug; Drug response; Pattern recognition (psychology); Perturbation (astronomy); Drug discovery","score_opus":0.009773181827747534,"score_gpt":0.22343894368627326,"score_spread":0.21366576185852573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958450458","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14880131,0.00012141555,3.6124013e-7,0.00022726765,0.000036813803,0.00014670758,0.850583,0.000004385918,0.000078693774],"genre_scores_gemma":[0.48403275,4.1611244e-7,0.00012281013,0.00024538848,0.000051368992,0.00020896475,0.5140435,0.000010878688,0.0012839235],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99928373,0.00007756332,0.00017281547,0.00020375551,0.00013573165,0.00012643273],"domain_scores_gemma":[0.9993339,0.00008102018,0.0001548694,0.00031208387,0.00009128399,0.000026809555],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000039591072,0.00008992077,0.000119702774,0.000038010065,0.000101466954,0.000005055677,0.00034822314,0.00011666928,0.8051825],"category_scores_gemma":[0.00043964488,0.000079067155,0.00009659993,0.00014635418,0.000014041493,0.0000010802886,0.0005132107,0.00011501484,0.000027689766],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009889335,0.000044151104,0.0000019394904,0.000010412797,0.000008311229,1.26273e-7,0.00006306651,0.000066816174,0.38795725,3.6947034e-7,0.6116538,0.000094871146],"study_design_scores_gemma":[0.000075443764,0.00009603077,0.00059515645,0.0000335395,0.000002529576,6.3201e-7,0.00008333584,0.00008726018,0.43263224,0.000004055262,0.5663316,0.000058138237],"about_ca_topic_score_codex":0.0000010415282,"about_ca_topic_score_gemma":0.0000057812445,"teacher_disagreement_score":0.80515486,"about_ca_system_score_codex":0.000013611522,"about_ca_system_score_gemma":0.00009334624,"threshold_uncertainty_score":0.3224265},"labels":[],"label_agreement":null},{"id":"W6958525447","doi":"10.6084/m9.figshare.21622026.v1","title":"Additional file 1 of Priorities for successful use of artificial intelligence by public health organizations: a literature review","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Clinical Evaluative Sciences; Vector Institute; Trillium Health Centre; Public Health Ontario; University of Toronto","funders":"","keywords":"Public health; Public access; MEDLINE; Government (linguistics)","score_opus":0.040155370453278855,"score_gpt":0.270804055277741,"score_spread":0.23064868482446213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958525447","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000045864075,0.006113775,0.000016146076,0.00038343278,0.000020354835,0.00026734293,0.9931415,0.0000059235617,0.0000057011125],"genre_scores_gemma":[0.0009015922,0.0005540811,0.00093830883,0.0005200302,0.000053721775,0.0005980283,0.99625915,0.000011659782,0.00016342635],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99935055,0.000039615377,0.00024161825,0.00016688416,0.000080793434,0.00012051726],"domain_scores_gemma":[0.9991831,0.00007038134,0.00021205578,0.00017222961,0.00033249796,0.000029704579],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000029584571,0.00007351044,0.00013441425,0.00003388275,0.00007418207,0.000015502384,0.00017942775,0.00007579259,0.7253299],"category_scores_gemma":[0.002231589,0.0000758932,0.000050710398,0.00028983972,0.00001604035,0.000004130381,0.00017257348,0.00006400763,0.000004546554],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000055730807,0.000038859474,2.7031345e-7,0.00046662023,0.000011770948,1.3802101e-7,0.0000068230343,0.000001083191,0.003071129,0.000024343273,0.9914571,0.0049162977],"study_design_scores_gemma":[0.000017691253,0.00027497477,0.0000062993927,0.0012568737,0.0000018901602,0.0000060144403,0.000014097874,0.000014103526,0.008761794,0.000023296785,0.9895517,0.000071217684],"about_ca_topic_score_codex":0.0000010728663,"about_ca_topic_score_gemma":0.000004700261,"teacher_disagreement_score":0.72532535,"about_ca_system_score_codex":0.000009298842,"about_ca_system_score_gemma":0.00028383758,"threshold_uncertainty_score":0.3094835},"labels":[],"label_agreement":null},{"id":"W6958726442","doi":"10.6084/m9.figshare.29662663","title":"Additional file 3 of The environmental adaptation of acidophilic archaea: promotion of horizontal gene transfer by genomic islands","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Horizontal gene transfer; Adaptation (eye); Gene transfer; Promotion (chess); Gene; Biodiversity","score_opus":0.007432748987758164,"score_gpt":0.18395682604904065,"score_spread":0.17652407706128248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958726442","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015255547,0.00015867702,5.461693e-7,0.000008489668,0.000038735427,0.00023567608,0.9980212,0.000001454565,0.000009673905],"genre_scores_gemma":[0.0037755033,0.00006087793,0.00003284027,0.000011134224,0.00008301643,0.00017881388,0.99576485,0.000007365483,0.00008561257],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99923164,0.00003633476,0.00027111935,0.00023526953,0.00012014486,0.00010548558],"domain_scores_gemma":[0.999392,0.00002627829,0.00018782483,0.0003448196,0.000032009822,0.000017115794],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000131553525,0.00015472178,0.00019597955,0.000041618096,0.000023556897,0.000002335964,0.000330822,0.0004952352,0.51916456],"category_scores_gemma":[0.000104202176,0.00013096354,0.00014963245,0.000052805626,0.000054547498,0.0000012960659,0.00018762855,0.00011803956,0.000006449617],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019821227,0.000075062424,2.4843476e-7,0.00011938581,0.00004831367,1.5809732e-7,0.0000027562119,0.0000011616276,0.22153942,3.189077e-8,0.77781045,0.00038319666],"study_design_scores_gemma":[0.00013597104,0.00030786433,0.00016027103,0.0002762201,0.00002021534,0.0000027437572,0.0000047489802,0.000003925036,0.20493099,0.0000014720898,0.7940664,0.00008914899],"about_ca_topic_score_codex":0.0000054071047,"about_ca_topic_score_gemma":0.000028760125,"teacher_disagreement_score":0.5191581,"about_ca_system_score_codex":0.000012427761,"about_ca_system_score_gemma":0.00013690861,"threshold_uncertainty_score":0.5340538},"labels":[],"label_agreement":null},{"id":"W6959183715","doi":"10.1021/bi900631u.s006","title":"Characterization of an RNA-Cleaving Deoxyribozyme with Optimal Activity at pH 5","year":2016,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Deoxyribozyme; Cleave; Ribonucleotide; Cleavage (geology); Nucleotide; RNA; Sequence (biology); Enzyme","score_opus":0.011595821989801577,"score_gpt":0.21638159846803257,"score_spread":0.20478577647823099,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6959183715","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9751974,0.00001208563,0.00003367356,0.00007183343,0.00002280864,0.00010354111,0.024463871,0.000015239969,0.00007958078],"genre_scores_gemma":[0.984667,0.000009484009,0.00016233292,0.000028120687,0.00011455973,0.000023595847,0.01472105,0.000018967954,0.00025485922],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994166,0.000021614771,0.00009030809,0.0002469169,0.000066090885,0.00015850489],"domain_scores_gemma":[0.99947596,0.000004197341,0.00011186273,0.00028271004,0.0000765434,0.00004870488],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000020848734,0.000107297245,0.000101168785,0.000023952762,0.00003807298,0.000009043524,0.00015142662,0.00020162405,0.004040238],"category_scores_gemma":[0.000050619547,0.00007312522,0.000030494459,0.00004760629,0.000019837897,0.000006774608,0.00014916848,0.000032098145,0.00003727032],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012822203,0.000030161465,0.000047036454,0.000014912137,0.000013850086,0.0000015851205,0.000004436542,8.4776786e-7,0.9876435,0.0000012395728,0.00027544695,0.011838774],"study_design_scores_gemma":[0.00029364508,0.0004654552,0.012359127,0.000109413624,0.0000045670513,0.000012042353,0.0000014884749,0.000011202457,0.9667564,7.621047e-7,0.019859154,0.00012671728],"about_ca_topic_score_codex":0.0000015954117,"about_ca_topic_score_gemma":0.00001807418,"teacher_disagreement_score":0.020887062,"about_ca_system_score_codex":0.000011195441,"about_ca_system_score_gemma":0.000033230805,"threshold_uncertainty_score":0.9968702},"labels":[],"label_agreement":null},{"id":"W6968417857","doi":"10.5281/zenodo.15753397","title":"Fig. 57 in A revision of Parapterogramma Papp and Pseudopterogramma Papp, with a review of the Parapterogramma genus group of the Pacific and Indomalayan regions (Diptera, Sphaeroceridae, Limosininae)","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Paratype; Genus; Group (periodic table); Scale (ratio); Morphology (biology)","score_opus":0.010382008397229317,"score_gpt":0.2153522353983035,"score_spread":0.2049702270010742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6968417857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6440997,0.19050644,0.0016535135,0.0059839585,0.00072708435,0.015247252,0.0029456194,0.0004422426,0.13839419],"genre_scores_gemma":[0.933408,0.06114309,0.00059530407,0.00012868286,0.00006736078,6.808315e-7,0.0004896058,0.0009878442,0.0031794086],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984635,0.00031896227,0.0003921649,0.0004212651,0.00018543194,0.0002186905],"domain_scores_gemma":[0.99854016,0.00000813052,0.00045317973,0.00077211636,0.00017436378,0.00005205322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034319673,0.00021874593,0.00036768272,0.00012165495,0.00015679287,0.000050783667,0.00069302926,0.00025885337,0.00018062892],"category_scores_gemma":[0.00014163334,0.00014682027,0.00008704301,0.0004398647,0.00067378563,0.0000040941727,0.0010931123,0.00021414268,0.0000029229245],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063980656,0.0005925058,0.0014271261,0.010812229,0.00055217044,0.000010059318,0.0003453859,0.0000013477975,0.048811093,0.0021474904,0.09076227,0.84389853],"study_design_scores_gemma":[0.00061588606,0.00061239244,0.0015653677,0.0036352635,0.00006654343,0.000049984006,0.00005720809,0.0000024065812,0.0023421065,0.000014909956,0.9908831,0.00015479908],"about_ca_topic_score_codex":0.000059140737,"about_ca_topic_score_gemma":0.000015830567,"teacher_disagreement_score":0.90012085,"about_ca_system_score_codex":0.00000946819,"about_ca_system_score_gemma":0.000010637786,"threshold_uncertainty_score":0.59871566},"labels":[],"label_agreement":null},{"id":"W6968603820","doi":"10.5281/zenodo.3458053","title":"Table S1.","year":2019,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Forest Service","funders":"","keywords":"Table (database); Set (abstract data type); Data set; Column (typography)","score_opus":0.012931644011762854,"score_gpt":0.21431009136715426,"score_spread":0.2013784473553914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6968603820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90328664,0.00013680143,0.00069227786,0.00052599557,0.00023260682,0.00034951975,0.00013696351,0.00021477295,0.09442441],"genre_scores_gemma":[0.99371433,0.00013534162,0.0002491246,0.00017144316,0.0001627233,1.8134003e-8,0.002013318,0.0005269182,0.0030268065],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991714,0.00006416039,0.00011387649,0.00031252595,0.0000986868,0.00023935126],"domain_scores_gemma":[0.9992949,0.0000016444465,0.00004431174,0.00041385516,0.00017900331,0.00006632293],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016346753,0.00008677032,0.00007893263,0.000056878976,0.00038600416,0.0001710073,0.00053808436,0.00012466869,0.0070538106],"category_scores_gemma":[0.00008661984,0.000088801105,0.000031145653,0.0001605927,0.000069445654,0.000004773805,0.0008104914,0.00010249785,0.008359673],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004202388,0.0000410638,0.000010534052,0.000012669792,0.000020357304,0.0000010787492,0.000021671141,0.000011573121,0.9172312,0.00088056736,0.06152276,0.020204503],"study_design_scores_gemma":[0.00028183748,0.0003451472,0.00020670886,0.000004101833,0.0000033983424,0.000039998653,0.000035420166,0.000026402822,0.09326763,0.000046086527,0.9056364,0.00010685098],"about_ca_topic_score_codex":0.0000043935806,"about_ca_topic_score_gemma":1.9655108e-7,"teacher_disagreement_score":0.84411365,"about_ca_system_score_codex":0.000012393288,"about_ca_system_score_gemma":0.0000027811157,"threshold_uncertainty_score":0.99385387},"labels":[],"label_agreement":null},{"id":"W6968669675","doi":"10.5281/zenodo.4599639","title":"Data visualization in R","year":2021,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Baycrest Hospital","funders":"","keywords":"Elegance; Code (set theory); Template; Personalization; Visualization; Data visualization; Learning curve","score_opus":0.041536396648920094,"score_gpt":0.28170759541544943,"score_spread":0.24017119876652934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6968669675","genre_codex":"other","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002446342,0.003243273,0.00318277,0.00047267036,0.0005110239,0.00078816136,0.0027985692,0.00048213478,0.98607504],"genre_scores_gemma":[0.057320204,0.013494856,0.0021842183,0.00067374797,0.0031110775,1.9464206e-7,0.52676797,0.026226748,0.37022102],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987438,0.00016262653,0.00016464501,0.0005882375,0.00012091218,0.00021982931],"domain_scores_gemma":[0.99878436,0.0000014411743,0.000094705334,0.00096866774,0.00009688228,0.000053945314],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022654013,0.00014039646,0.00013851919,0.00018231903,0.0001750305,0.00017656798,0.0011450074,0.0003594137,0.011023823],"category_scores_gemma":[0.0002320118,0.00015833027,0.000023615747,0.0002532466,0.000089965004,0.0000024704693,0.0026008037,0.00014324667,0.000434857],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015856742,0.000079964964,0.0000015390033,0.00005671008,0.00003807121,0.000008280162,0.000012472796,0.0000014554644,0.102960765,0.00033571382,0.8726124,0.02387678],"study_design_scores_gemma":[0.00026157446,0.000099549376,0.00004491846,0.000049929495,0.0000070400297,0.000032083382,0.000023529048,0.000032981025,0.0024464857,0.000009990929,0.9968201,0.00017182688],"about_ca_topic_score_codex":0.000021623488,"about_ca_topic_score_gemma":0.000014549749,"teacher_disagreement_score":0.615854,"about_ca_system_score_codex":0.000020081083,"about_ca_system_score_gemma":0.000006357765,"threshold_uncertainty_score":0.98988026},"labels":[],"label_agreement":null},{"id":"W6968714654","doi":"10.5281/zenodo.3351671","title":"liberfa/erfa: v2.0.0","year":2021,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Process (computing); Action (physics); Work (physics); Product (mathematics)","score_opus":0.018574196002956414,"score_gpt":0.22922114392253554,"score_spread":0.2106469479195791,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6968714654","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0017386213,0.0024282984,0.00065929483,0.00045861644,0.00043920884,0.00040062558,0.00048198167,0.0004802289,0.9929131],"genre_scores_gemma":[0.021250883,0.0061803465,0.0017665072,0.000544808,0.0029994233,1.5629128e-7,0.036026765,0.01968803,0.9115431],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985997,0.00015230197,0.00017416105,0.0005930052,0.00015576674,0.00032506778],"domain_scores_gemma":[0.99887323,0.0000018021434,0.00012127868,0.00071928644,0.00017436339,0.00011003199],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001581302,0.00021246006,0.00018958857,0.00014895399,0.00039331173,0.00026275593,0.00084906723,0.00051583396,0.0298728],"category_scores_gemma":[0.00015166143,0.00022799135,0.00007871247,0.00020617794,0.00016676837,0.0000015840388,0.0016236366,0.00023399624,0.0018267226],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016256357,0.000054433327,2.909399e-7,0.00004611523,0.00007791961,0.000008229334,0.000012207742,6.995771e-7,0.19370587,0.0002342487,0.77818274,0.02766099],"study_design_scores_gemma":[0.00027021108,0.00022410012,0.000017920174,0.000042804193,0.000015754129,0.00008643151,0.000021750306,0.0000028400534,0.015930729,0.000017587114,0.98311853,0.0002513284],"about_ca_topic_score_codex":0.000013084094,"about_ca_topic_score_gemma":0.000001911434,"teacher_disagreement_score":0.2049358,"about_ca_system_score_codex":0.000023519082,"about_ca_system_score_gemma":0.0000072122366,"threshold_uncertainty_score":0.9989505},"labels":[],"label_agreement":null},{"id":"W6968949187","doi":"10.5281/zenodo.4836112","title":"vashikaran mantra in hindi +91-9772829207 spain san diego alaska","year":2021,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Wife; Mantra; Faith; Adversary; Hindi; Service (business)","score_opus":0.01623363202544834,"score_gpt":0.22545998197194383,"score_spread":0.2092263499464955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6968949187","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97526205,0.00038328298,0.0007032621,0.00085381203,0.00017019139,0.00024663183,0.00014175088,0.00014783567,0.022091158],"genre_scores_gemma":[0.9954221,0.00031748536,0.0003600509,0.00022135275,0.0001934611,5.4360505e-8,0.002035719,0.0005005967,0.00094917795],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985567,0.00023272399,0.0002185885,0.000480482,0.00014126408,0.00037026865],"domain_scores_gemma":[0.99915177,0.000004796329,0.000058661477,0.00048494185,0.00019740386,0.00010244033],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00034902894,0.00013822714,0.00013530068,0.00010597626,0.00041687718,0.00022426642,0.0005426397,0.00020257151,0.004142999],"category_scores_gemma":[0.00027242603,0.0001515554,0.00005440259,0.0003149604,0.00012263963,0.000006936523,0.00096645043,0.00020768969,0.0007865393],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006506214,0.00015729187,0.000054967353,0.000026803751,0.00003586103,0.00005185328,0.000108225504,0.0000150166725,0.91586864,0.0005850529,0.026624097,0.056407124],"study_design_scores_gemma":[0.00055087084,0.00023622041,0.0033766662,0.000014332746,0.000006778074,0.00012588764,0.00012243085,0.000028402219,0.131652,0.00008675707,0.8636136,0.00018603142],"about_ca_topic_score_codex":0.0000071272248,"about_ca_topic_score_gemma":0.000010451305,"teacher_disagreement_score":0.8369895,"about_ca_system_score_codex":0.000037202,"about_ca_system_score_gemma":0.0000091721,"threshold_uncertainty_score":0.9999915},"labels":[],"label_agreement":null},{"id":"W6968971961","doi":"10.5281/zenodo.6992688","title":"Conflict-Driven Learning in AI Planning State-Space Search - Code and Benchmarks","year":2022,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Probabilistic logic; Benchmark (surveying); Source code; Pruning; Scripting language; Code (set theory)","score_opus":0.01862908720400185,"score_gpt":0.2523385830621746,"score_spread":0.23370949585817274,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6968971961","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12711263,0.0040622717,0.0009342384,0.0019410738,0.00034919172,0.0017746927,0.0015564497,0.00084869895,0.86142075],"genre_scores_gemma":[0.53958315,0.011162521,0.0010883488,0.00082836294,0.0010574077,9.966744e-7,0.053052872,0.019252,0.37397435],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984819,0.0002908528,0.00016519667,0.0005426866,0.00017124235,0.0003480944],"domain_scores_gemma":[0.9994209,0.000005095599,0.000091204645,0.00031685134,0.00007233464,0.00009361324],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00030882412,0.00018182305,0.00018114071,0.00028937173,0.0004825199,0.00020842956,0.0005440381,0.00026250252,0.012915273],"category_scores_gemma":[0.00011840689,0.00020739547,0.00002998194,0.00020455604,0.00017739201,0.0000035238666,0.0019771492,0.00059518905,0.00013358724],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016035144,0.00009561118,0.00012641709,0.00013250756,0.00012243884,0.000050822488,0.0005874339,0.0005004557,0.16623867,0.0002665564,0.80767536,0.024043404],"study_design_scores_gemma":[0.00043345575,0.00044019448,0.00017949087,0.000029787898,0.0000063252332,0.00004415635,0.0001896393,0.00011365526,0.0013254224,0.000005780874,0.99700886,0.00022321031],"about_ca_topic_score_codex":0.000045403667,"about_ca_topic_score_gemma":0.000005320102,"teacher_disagreement_score":0.4874464,"about_ca_system_score_codex":0.000042575368,"about_ca_system_score_gemma":0.0000088314755,"threshold_uncertainty_score":0.98798704},"labels":[],"label_agreement":null},{"id":"W6969043444","doi":"10.5281/zenodo.6174565","title":"MPIconstants","year":2022,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Perimeter Institute","funders":"","keywords":"Interface (matter); Relation (database); Constant (computer programming); Binary number; Key (lock)","score_opus":0.016564849730713663,"score_gpt":0.226140519295023,"score_spread":0.20957566956430934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6969043444","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.001004354,0.0006511873,0.0002207462,0.00023095093,0.0002720189,0.00036191547,0.0010931931,0.00044514987,0.9957205],"genre_scores_gemma":[0.049675282,0.004209353,0.0009603844,0.00080859166,0.0021710647,3.0185907e-7,0.048106972,0.02845899,0.86560905],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99884796,0.00014287079,0.00013569013,0.0004629122,0.00014465707,0.00026593058],"domain_scores_gemma":[0.999159,0.000001370768,0.00010951532,0.00057829235,0.00007249719,0.00007934797],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016877385,0.00016058903,0.00013389204,0.00016917572,0.00058790925,0.0001495101,0.0009119343,0.0002646126,0.09227876],"category_scores_gemma":[0.00011148044,0.00017693004,0.000054945864,0.00016760248,0.00015182428,0.0000013084383,0.0019397613,0.00021669589,0.0018480677],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022674361,0.000047121994,6.221692e-7,0.000020914524,0.00005785902,0.000005425235,0.000011751608,6.8907644e-7,0.06219191,0.00035380857,0.90610737,0.03117984],"study_design_scores_gemma":[0.00026043112,0.000296231,0.000011187893,0.000008620626,0.000011320582,0.00007029301,0.0000380122,0.0000016006004,0.0021090165,0.00001947892,0.996973,0.00020081813],"about_ca_topic_score_codex":0.000009046635,"about_ca_topic_score_gemma":0.0000010090479,"teacher_disagreement_score":0.13011143,"about_ca_system_score_codex":0.000032373253,"about_ca_system_score_gemma":0.000004704934,"threshold_uncertainty_score":0.9989291},"labels":[],"label_agreement":null},{"id":"W6969277437","doi":"10.5683/sp3/wgkzwt","title":"Wapiti Lake (East) British Columbia. 1:50,000. Map Sheet 093I10, ed. 1, 1966","year":2022,"lang":"en","type":"dataset","venue":"Borealis","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Georeference; Viewshed analysis; General partnership; Natural (archaeology); Raster graphics; Aerial photography; Government (linguistics); Topographic map (neuroanatomy); Natural resource","score_opus":0.006065056844438056,"score_gpt":0.20903259907653743,"score_spread":0.20296754223209937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6969277437","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0019399882,0.0019309885,0.0000032037537,0.0002532123,0.0011287885,0.00044669944,0.9940073,0.00004936418,0.00024046563],"genre_scores_gemma":[0.00010252601,0.006223314,0.00009436659,0.001072312,0.0012549632,0.00018885601,0.9890236,0.00008494057,0.0019551036],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971608,0.00013906797,0.00052632025,0.001118857,0.00033936556,0.00071557064],"domain_scores_gemma":[0.9978378,0.000009843032,0.00029487503,0.0015488883,0.00010816557,0.00020043133],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023197605,0.0004168573,0.00055491354,0.00007052281,0.00028815906,0.0003738002,0.0012306491,0.0014379848,0.018525075],"category_scores_gemma":[0.00008294914,0.00064632396,0.00028407658,0.00011846795,0.00026073414,0.0000028855027,0.0011934073,0.0005902853,0.000020800127],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039004477,0.00015482146,0.00003606887,0.00008927423,0.00016396439,0.00012267397,0.0000026819957,0.0000015162984,0.0031019733,0.0000016170869,0.9943228,0.0019635987],"study_design_scores_gemma":[0.00052490964,0.0005562204,0.00043519423,0.000030748408,0.00012164737,0.00020436158,0.000023552182,5.311505e-7,0.00038511807,0.000038748065,0.9969213,0.0007576888],"about_ca_topic_score_codex":0.11303792,"about_ca_topic_score_gemma":0.6380847,"teacher_disagreement_score":0.5250468,"about_ca_system_score_codex":0.00003903103,"about_ca_system_score_gemma":0.0002299232,"threshold_uncertainty_score":0.9998584},"labels":[],"label_agreement":null},{"id":"W6969291739","doi":"10.5281/zenodo.998210","title":"boutiques/boutiques: Release 0.5.3","year":2017,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Concordia University","funders":"","keywords":"JSON; Container (type theory); Invocation; Directory; Test (biology)","score_opus":0.01882688835178818,"score_gpt":0.2494678285133757,"score_spread":0.23064094016158754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6969291739","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0011864995,0.0011823319,0.00093569676,0.00042885522,0.00032940644,0.00053512346,0.0008426727,0.0007092887,0.9938501],"genre_scores_gemma":[0.08237228,0.011150185,0.0010611451,0.0005436122,0.0031903638,2.649162e-7,0.021963065,0.01956567,0.86015344],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985091,0.00015958483,0.00016888518,0.0006234993,0.00016336296,0.00037556796],"domain_scores_gemma":[0.99824476,0.0000016450721,0.00023555887,0.0011820095,0.00018844171,0.00014758258],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00024243764,0.00025188643,0.00021222862,0.00017014165,0.00083549053,0.0004006678,0.0014491337,0.00063406,0.006726012],"category_scores_gemma":[0.00031776432,0.00026350265,0.000089621026,0.00007491778,0.00031478168,0.0000037205702,0.0016575734,0.0002804452,0.0023298366],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037239304,0.000048724043,5.411942e-7,0.0000467991,0.000070214664,0.000009819273,0.000018001987,3.1422883e-7,0.05579379,0.00026219938,0.89301646,0.0506959],"study_design_scores_gemma":[0.00031305227,0.00030293147,0.000022090091,0.00006840297,0.000019935125,0.00006282052,0.000012296614,0.0000038797994,0.009422822,0.000037748814,0.9894357,0.0002983482],"about_ca_topic_score_codex":0.000057392896,"about_ca_topic_score_gemma":0.000006484116,"teacher_disagreement_score":0.1336967,"about_ca_system_score_codex":0.000031364034,"about_ca_system_score_gemma":0.000008713218,"threshold_uncertainty_score":0.9999817},"labels":[],"label_agreement":null},{"id":"W6969316909","doi":"10.5403565/foo.bar","title":"DOWNLOAD [Pdf]] Novelist as a Vocation by Haruki Murakami ePub Download","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Popularity; Download; Plot (graphics); Performance art; Canadian literature","score_opus":0.010793316630758278,"score_gpt":0.22884157450304077,"score_spread":0.2180482578722825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6969316909","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014701446,0.003526416,0.0004952507,0.001521535,0.0006908261,0.0008746233,0.0050517605,0.0009233567,0.9854461],"genre_scores_gemma":[0.027223758,0.0052610217,0.00030421797,0.00076429604,0.0014629521,7.527764e-7,0.07987916,0.008469853,0.876634],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981092,0.00012554626,0.0002698382,0.000845578,0.00024075813,0.00040907835],"domain_scores_gemma":[0.9987376,0.0000024392716,0.00016329194,0.00074633217,0.00020074542,0.000149597],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000238858,0.00031709464,0.00022320563,0.0002459485,0.00035198184,0.0005379654,0.0009839742,0.0006440264,0.025708865],"category_scores_gemma":[0.00018985287,0.00032459127,0.000098125456,0.000300969,0.00024329641,0.0000051777047,0.001222727,0.00034806557,0.062743306],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028862809,0.000060975835,8.856848e-8,0.000073296986,0.00008957532,0.000004841519,0.000021342363,2.671129e-7,0.25209492,0.00015683295,0.72812575,0.019343263],"study_design_scores_gemma":[0.00033715472,0.00039324793,0.0000029857147,0.000055206827,0.00003845466,0.00009395394,0.000035814162,0.000003470948,0.019374484,0.000042457108,0.9792628,0.00035995565],"about_ca_topic_score_codex":0.000064275155,"about_ca_topic_score_gemma":0.0000029899113,"teacher_disagreement_score":0.25113708,"about_ca_system_score_codex":0.000053477972,"about_ca_system_score_gemma":0.000011206869,"threshold_uncertainty_score":0.9999206},"labels":[],"label_agreement":null},{"id":"W6969403923","doi":"10.5281/zenodo.8083438","title":"Goa's Hospitality Industry: A Study on Status, Opportunities, and Challenges","year":2023,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Hospitality; Tourism; Hospitality industry; Revenue; Quarter (Canadian coin); Hospitality management studies; State (computer science)","score_opus":0.09420045050056756,"score_gpt":0.270331548728556,"score_spread":0.17613109822798845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6969403923","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98740673,0.00021656368,0.0000071550407,0.0023013174,0.0000712449,0.00030860255,0.00017322302,0.000233488,0.009281665],"genre_scores_gemma":[0.99425435,0.00385077,0.000012490037,0.000075133205,0.00012030415,9.547155e-8,0.00087890815,0.0003490772,0.00045889107],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989192,0.00017278038,0.0001254664,0.000371812,0.00013132754,0.00027943836],"domain_scores_gemma":[0.99933815,0.0000041251515,0.00004644292,0.0003668684,0.00012458814,0.00011984773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003770212,0.0001105635,0.000094753865,0.00010655944,0.0005217407,0.00015702806,0.00031597228,0.00018390975,0.00024249911],"category_scores_gemma":[0.00016515986,0.00011133594,0.000019083362,0.0001588797,0.00012472688,0.0000046591567,0.0009836731,0.00018243837,0.00022868656],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027416076,0.00086031953,0.00018352024,0.00011269161,0.00027125783,0.00006932328,0.0016758508,0.000009998898,0.17798,0.006192026,0.08605358,0.7263173],"study_design_scores_gemma":[0.000417725,0.00170946,0.015239923,0.0000068238405,0.000007258133,0.000014608583,0.0028502909,0.0000058386504,0.0026121594,0.000048477486,0.976947,0.00014040459],"about_ca_topic_score_codex":0.000007568141,"about_ca_topic_score_gemma":8.110339e-7,"teacher_disagreement_score":0.89089346,"about_ca_system_score_codex":0.000016394917,"about_ca_system_score_gemma":0.0000041236194,"threshold_uncertainty_score":0.45401478},"labels":[],"label_agreement":null},{"id":"W6969420463","doi":"10.5683/sp2/gsut45","title":"GPAZ Yorkton Station Data April 1 2019 to July 1 2019","year":2020,"lang":"en","type":"dataset","venue":"Borealis","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Great Plains College","funders":"","keywords":"Ozone; Wind speed; Air pollution; Wind direction; Span (engineering)","score_opus":0.02027391955121227,"score_gpt":0.270566439867766,"score_spread":0.25029252031655375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6969420463","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000100938305,0.00038734465,0.0001267594,0.001189591,0.00045834438,0.00038629977,0.99724287,0.000024031906,0.00008384554],"genre_scores_gemma":[0.00002566207,0.0027537055,0.00065886945,0.0018266394,0.0012379336,0.000018497889,0.99316925,0.000041595813,0.0002678518],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980331,0.00006287789,0.00035576127,0.0009911801,0.00020161786,0.00035544354],"domain_scores_gemma":[0.9972072,0.000008265538,0.00019270391,0.0023164903,0.00008995471,0.00018533725],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015423946,0.00035024088,0.00033848645,0.000087283835,0.00005895008,0.00007502161,0.0015382098,0.0009719576,0.000029159899],"category_scores_gemma":[0.00017809523,0.0003495848,0.000071676855,0.00013109704,0.00006512914,0.0000032242745,0.0014231956,0.0002605212,0.00029218942],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010115126,0.000037924405,0.0000010759933,0.000033047087,0.00008128868,0.0000074766067,0.0000042193574,0.0000025085926,0.03195072,0.0000032019789,0.966205,0.0015723656],"study_design_scores_gemma":[0.00023892237,0.00044310134,0.00009376395,0.000018347815,0.00008370526,0.000007549871,0.000005063796,0.0000028305099,0.012081941,0.000011275483,0.98659265,0.0004208247],"about_ca_topic_score_codex":0.0052519212,"about_ca_topic_score_gemma":0.004347403,"teacher_disagreement_score":0.020387653,"about_ca_system_score_codex":0.000016981225,"about_ca_system_score_gemma":0.00020004288,"threshold_uncertainty_score":0.99989563},"labels":[],"label_agreement":null},{"id":"W6969570370","doi":"10.5683/sp2/9x052k","title":"Canadian Gallup Poll, December 1983, #480_1","year":2019,"lang":"en","type":"dataset","venue":"Borealis","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Politics; George (robot); Prime minister; Public opinion; Government (linguistics); Control (management); Reading (process)","score_opus":0.008906677915262352,"score_gpt":0.23452780518125108,"score_spread":0.22562112726598874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6969570370","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008630918,0.0005326955,0.0000025140425,0.0005211252,0.00060560583,0.00027545134,0.9961912,0.0000102206395,0.0009980928],"genre_scores_gemma":[0.0007267345,0.0017405384,0.000065997745,0.0013839055,0.0007487558,0.000023113456,0.9944917,0.00003740151,0.0007818666],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983105,0.0000443703,0.00027231217,0.0006374679,0.00014076225,0.0005945685],"domain_scores_gemma":[0.9980997,0.0000047732838,0.00012988856,0.0014072863,0.000090073794,0.00026828903],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00010406443,0.00038490022,0.00033561865,0.00016435262,0.0000760285,0.000061378,0.00073111674,0.0014355817,0.00021438798],"category_scores_gemma":[0.000055464225,0.00037029156,0.00015579801,0.00008742933,0.000087954104,0.0000012998121,0.00024514235,0.0002836396,0.0001380632],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022216187,0.000021095006,0.000017983497,0.000027370463,0.00009236567,0.000020625599,0.0000013638927,0.0000015898263,0.006593623,0.00000703425,0.9928243,0.0003704046],"study_design_scores_gemma":[0.00024088971,0.00020601747,0.00017583593,0.000017305121,0.00006327302,0.00004436532,0.000005258218,9.290872e-7,0.005390843,0.00001433325,0.99337304,0.00046792376],"about_ca_topic_score_codex":0.5612176,"about_ca_topic_score_gemma":0.91557807,"teacher_disagreement_score":0.35436046,"about_ca_system_score_codex":0.000068066576,"about_ca_system_score_gemma":0.00073992356,"threshold_uncertainty_score":0.9998749},"labels":[],"label_agreement":null},{"id":"W6976298690","doi":"10.60692/sstv1-0s234","title":"Profiling cell envelope-antibiotic interactions reveals vulnerabilities to β-lactams in a multidrug-resistant bacterium","year":2023,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Burkholderia cenocepacia; Peptidoglycan; Bacteria; Aztreonam; Mutant; Antibiotics; Burkholderia; Antibiotic resistance; Cell envelope","score_opus":0.020021609076343667,"score_gpt":0.22651906990460927,"score_spread":0.2064974608282656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976298690","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99724185,0.000002300091,0.0005187541,0.00015656087,0.0005552805,0.0005308823,0.00016471378,0.00010178797,0.00072786905],"genre_scores_gemma":[0.9982044,0.0000010513693,0.00075072143,0.00010974657,0.00010200277,0.00007309916,0.00017659932,0.000016955717,0.00056540675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986049,0.000071102506,0.0005998445,0.00025682113,0.00011917535,0.00034813685],"domain_scores_gemma":[0.9992401,0.0000047632575,0.00015486914,0.00040707894,0.00011057076,0.0000826177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033097994,0.00019402572,0.00021664512,0.0003602353,0.00008537518,0.000097177035,0.00020205397,0.00020057861,0.0000076207702],"category_scores_gemma":[0.000049284492,0.00017398525,0.00006637649,0.00037286582,0.000029765228,0.000021008076,0.00019063448,0.000108561064,0.0004778288],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004011317,0.000014963219,0.07738527,0.0008645305,0.000054377524,0.000009887177,0.011513987,0.00043821384,0.9080837,0.00008960342,0.0005320974,0.0006122427],"study_design_scores_gemma":[0.0012235929,0.00030244933,0.094329044,0.00022549399,0.000018275405,0.000029611225,0.015115904,0.00075627293,0.87853116,0.0000013880621,0.008857571,0.00060921855],"about_ca_topic_score_codex":0.000010750872,"about_ca_topic_score_gemma":0.000005017729,"teacher_disagreement_score":0.029552521,"about_ca_system_score_codex":0.000060096743,"about_ca_system_score_gemma":0.00004416111,"threshold_uncertainty_score":0.70949125},"labels":[],"label_agreement":null},{"id":"W6976442058","doi":"10.60692/r6p6d-4vn47","title":"The role of cell-envelope synthesis for envelope growth and cytoplasmic density in Bacillus subtilis","year":2022,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Bacillus subtilis; Cell envelope; Peptidoglycan; Intracellular; Cytoplasm; Bacteria; Envelope (radar); Membrane","score_opus":0.007980040321225512,"score_gpt":0.16767869562079593,"score_spread":0.15969865529957042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976442058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998692,0.000031590116,0.0003060102,0.00005104878,0.00011819632,0.00030522366,0.0001639177,0.000009520152,0.0003225123],"genre_scores_gemma":[0.9995448,0.0000065560644,0.00020792446,0.000028922428,0.00001899694,0.00013753265,0.000024725188,0.0000065541144,0.000023987888],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992457,0.000052584724,0.00032844098,0.00012582907,0.000086880165,0.00016053571],"domain_scores_gemma":[0.99952656,0.000009312102,0.00017403562,0.00020238223,0.000062666135,0.000025038971],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002985844,0.00009972082,0.00013572453,0.00007396537,0.00017699761,0.000029615188,0.00017221787,0.000104633604,0.000002125313],"category_scores_gemma":[0.000032224667,0.000078095334,0.000039773655,0.00008875806,0.000046687834,0.0000062355175,0.00021046223,0.000054846394,0.0000022514446],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028140037,0.000034917604,0.47226563,0.0012692529,0.0002651427,0.0000033306205,0.022741213,0.00016732524,0.481123,0.0019201643,0.00024175894,0.017154269],"study_design_scores_gemma":[0.0006010326,0.00016175325,0.019759417,0.000010098242,0.000015502705,0.000028272432,0.008144333,0.0002686203,0.96478456,0.000008293093,0.006052133,0.0001659928],"about_ca_topic_score_codex":0.000011057676,"about_ca_topic_score_gemma":0.0000021825142,"teacher_disagreement_score":0.48366156,"about_ca_system_score_codex":0.000020265557,"about_ca_system_score_gemma":0.000041076284,"threshold_uncertainty_score":0.31846353},"labels":[],"label_agreement":null},{"id":"W6976693732","doi":"10.6084/m9.figshare.13889100","title":"Additional file 4 of Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Klebsiella pneumoniae; Transcriptional regulation; Zinc; Bacteria; Quantitative proteomics; Capsule; Quantitative analysis (chemistry); Regulation of gene expression; Proteomics","score_opus":0.01628819800727468,"score_gpt":0.22304284855349826,"score_spread":0.20675465054622358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976693732","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.27308747,0.00008096674,0.0000025159275,0.00012373278,0.000014534284,0.00020504628,0.7264389,0.0000064371743,0.000040401304],"genre_scores_gemma":[0.25660646,0.000017642655,0.0007634112,0.000016209626,0.000024516472,0.0003396666,0.74199903,0.0000071067493,0.00022596895],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992865,0.000045545876,0.00021140842,0.00026589318,0.00009091672,0.00009974653],"domain_scores_gemma":[0.9994763,0.000027027289,0.00014596044,0.000085674845,0.000244568,0.000020472608],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000029414534,0.0000914322,0.00010163167,0.00004061952,0.000036805206,0.000011891013,0.000045147135,0.00021347908,0.10573018],"category_scores_gemma":[0.0007655214,0.000101187885,0.000030087089,0.00014795178,0.000024522224,0.00001149414,0.000012237751,0.00006605728,0.000008200995],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015652411,0.000061004495,0.000020505562,0.00003068008,0.000013132433,3.7683606e-7,0.000038996,0.00002703913,0.7371372,0.0000046541804,0.2623607,0.0002900598],"study_design_scores_gemma":[0.0004534918,0.00032208956,0.108505115,0.000685518,0.000011865733,0.000010122804,0.00012352238,0.0004089392,0.7883664,0.00015911115,0.10068767,0.0002661913],"about_ca_topic_score_codex":0.0000036357355,"about_ca_topic_score_gemma":0.0001368984,"teacher_disagreement_score":0.16167301,"about_ca_system_score_codex":0.000015289808,"about_ca_system_score_gemma":0.00012294277,"threshold_uncertainty_score":0.8950873},"labels":[],"label_agreement":null},{"id":"W6980023202","doi":"","title":"“Architectural incentives to immorality” unmarried women’s access to housing in Winnipeg, 1897-1929","year":2023,"lang":"en","type":"dissertation","venue":"Mspace (University of Manitoba)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Winnipeg Foundation","keywords":"Incentive; White (mutation); Legislation; Austerity; Population; Paid work; Socioeconomic status; Work (physics); Subsidy; Residence","score_opus":0.014521499836174089,"score_gpt":0.2447820717971669,"score_spread":0.2302605719609928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6980023202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741846,0.000044845478,0.0000471739,0.0011575966,0.0005374456,0.00046102505,0.00007142991,0.000033884844,0.0002281415],"genre_scores_gemma":[0.9973085,0.00009336852,0.0004431489,0.00010686295,0.000106180276,0.000003952551,0.00040320278,0.00004302455,0.0014917551],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985844,0.00006782935,0.00015507801,0.0005945904,0.00016997464,0.00042815457],"domain_scores_gemma":[0.99919456,0.000007681478,0.00015319677,0.00039749665,0.00011072021,0.00013636933],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00014717967,0.00026296862,0.00037382165,0.00044946195,0.00010405225,0.00004316412,0.00077189185,0.0005186883,0.000007693191],"category_scores_gemma":[0.000051624505,0.0003410463,0.00009996182,0.00050875096,0.000067467685,0.000007357701,0.0005648806,0.0002119519,0.00002810559],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017927717,0.000100202444,0.011330729,0.00024249009,0.00015798656,0.00005064547,0.00149673,0.00022788237,0.9714788,0.000027431384,0.0024683555,0.0106259575],"study_design_scores_gemma":[0.0009755022,0.0007893392,0.81671995,0.00025238565,0.000049834038,0.0000026243767,0.02537236,0.000012140191,0.12933396,0.0000981794,0.025505017,0.000888693],"about_ca_topic_score_codex":0.0021458364,"about_ca_topic_score_gemma":0.39780366,"teacher_disagreement_score":0.84214485,"about_ca_system_score_codex":0.00012489229,"about_ca_system_score_gemma":0.000124706,"threshold_uncertainty_score":0.99990416},"labels":[],"label_agreement":null},{"id":"W6980485921","doi":"","title":"Catch Shares in Action: British Columbia Integrated Groundfish Program","year":2013,"lang":"en","type":"report","venue":"Issue Lab (Candid)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Groundfish; Accountability; Program evaluation; Pilot program; Baseline (sea); Research program; Program Design Language","score_opus":0.019576460874871183,"score_gpt":0.28561193620964975,"score_spread":0.26603547533477856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6980485921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9741008,0.005945255,0.0000065717777,0.000506915,0.0031494205,0.0019354892,0.0007674839,0.00019213659,0.013395915],"genre_scores_gemma":[0.6299307,0.04310875,0.0012187494,0.0003782407,0.0056584734,0.001534343,0.014034932,0.00035755723,0.30377826],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973747,0.00008261379,0.00060421624,0.0009833513,0.00033093034,0.0006241997],"domain_scores_gemma":[0.99835885,0.00000720187,0.00030504802,0.0007121695,0.00048037988,0.00013638387],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023993097,0.00037556468,0.00062520587,0.00008360658,0.000100136225,0.00064643216,0.0005398798,0.002231026,0.0014829097],"category_scores_gemma":[0.00014733103,0.00051858445,0.00016443328,0.00030580562,0.00020381971,0.0000060364755,0.0003237277,0.0006434548,0.00006296392],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031809766,0.0003051474,0.006720813,0.00021867856,0.00018220731,0.00009682595,0.000012549514,4.453551e-7,0.02378351,8.645719e-7,0.72500193,0.24364519],"study_design_scores_gemma":[0.00052374776,0.00058261486,0.010027874,0.00020719541,0.000045246885,0.00024331966,0.00004334203,0.000005429152,0.0041326163,0.000034737353,0.98355424,0.0005996337],"about_ca_topic_score_codex":0.1510136,"about_ca_topic_score_gemma":0.38898394,"teacher_disagreement_score":0.34417012,"about_ca_system_score_codex":0.00015844505,"about_ca_system_score_gemma":0.00075521145,"threshold_uncertainty_score":0.9997266},"labels":[],"label_agreement":null},{"id":"W6981181797","doi":"","title":"Diseño de cuatro modelos acústicos virtuales para la recuperación del Palacio de la Música de Madrid como sala de conciertos y estudio de viabilidad de acústica bajo demanda","year":2019,"lang":"es","type":"dissertation","venue":"Archivo Digital UPM (Universidad Politécnica de Madrid)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Nova scotia; Statistical analysis; Christian ministry","score_opus":0.006174031785967197,"score_gpt":0.24919499596594177,"score_spread":0.24302096417997457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6981181797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97141904,0.00082923955,0.017553955,0.00084613974,0.00017786829,0.00094073766,0.0017246712,0.00016718234,0.0063411426],"genre_scores_gemma":[0.9831327,0.0042235954,0.007118457,0.0007331155,0.0004680498,0.000112056034,0.0021888663,0.0003050839,0.0017180642],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9928814,0.0010702397,0.00089524593,0.0016748102,0.00042461828,0.00305365],"domain_scores_gemma":[0.99531627,0.0010175386,0.00059097854,0.0015263899,0.00022808819,0.001320714],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0008230792,0.0014109296,0.0013234909,0.00044660646,0.0005331134,0.000647276,0.002071484,0.0027595083,0.00003926341],"category_scores_gemma":[0.0010162471,0.0016158827,0.0010437726,0.00037732205,0.0013976368,0.00007571239,0.0009614779,0.0016488099,0.00006273945],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003289277,0.0014445854,0.06669501,0.0010173628,0.0021251517,0.00071209617,0.00337309,0.0015123603,0.8834803,0.017013982,0.0013072613,0.018029487],"study_design_scores_gemma":[0.015759636,0.0073233997,0.28750646,0.002983391,0.006483317,0.006211969,0.0132401455,0.049216885,0.46076086,0.03349388,0.10508726,0.011932789],"about_ca_topic_score_codex":0.0005463335,"about_ca_topic_score_gemma":0.00015601135,"teacher_disagreement_score":0.42271948,"about_ca_system_score_codex":0.0009929528,"about_ca_system_score_gemma":0.0048633427,"threshold_uncertainty_score":0.9998641},"labels":[],"label_agreement":null},{"id":"W6981315431","doi":"","title":"Dr. Ozmon With Canada Scholars, ca. 1990","year":2011,"lang":"en","type":"other","venue":"Saint Mary's University Institutional Repository (Saint Mary's University)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Government (linguistics); Work (physics); Natural (archaeology); Identification (biology)","score_opus":0.004842086571017112,"score_gpt":0.15616445191250017,"score_spread":0.15132236534148305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6981315431","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.094417945,0.00072634144,0.00091068476,0.000491209,0.0021663995,0.0010157992,0.0011242932,0.00026230986,0.898885],"genre_scores_gemma":[0.08870785,0.001171554,0.0013784578,0.00022081331,0.00068907085,9.871408e-7,0.0017020263,0.00021433491,0.9059149],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99737203,0.00018960575,0.0002300047,0.0011528796,0.00043926606,0.0006162001],"domain_scores_gemma":[0.9980867,0.000013045273,0.0003822005,0.00092546263,0.0002252085,0.000367365],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009645905,0.00067047833,0.00051213603,0.00064769114,0.00063820486,0.000040413273,0.0011334153,0.0011848413,0.00042381318],"category_scores_gemma":[0.000020197776,0.00074711116,0.00021866399,0.000464646,0.0008754159,0.000023471732,0.0008146765,0.0006328199,0.000038069003],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050735227,0.0012039886,0.0074721975,0.0005292802,0.004422448,0.022404004,0.0000560911,0.00034000617,0.07371682,0.06403483,0.8179586,0.0027882084],"study_design_scores_gemma":[0.0011606987,0.00043722446,0.00089711056,0.00016139528,0.00023592295,0.0002084121,0.00012416898,0.0000047156555,0.0037436488,0.000009276544,0.9920985,0.0009189237],"about_ca_topic_score_codex":0.32506022,"about_ca_topic_score_gemma":0.26270851,"teacher_disagreement_score":0.17413989,"about_ca_system_score_codex":0.0016262509,"about_ca_system_score_gemma":0.0033351588,"threshold_uncertainty_score":0.999498},"labels":[],"label_agreement":null},{"id":"W6986984107","doi":"","title":"The role of <em>Bacteroides fragilis</em> RecQ DNA helicases in cell survival after metronidazole exposure","year":2011,"lang":"en","type":"article","venue":"Research Portal (Queen's University Belfast)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Helicase; Metronidazole; DNA damage; Cell survival; DNA; DNA repair; RecQ helicase; Cancer; Cell; Programmed cell death","score_opus":0.012153231847425217,"score_gpt":0.2291955869709001,"score_spread":0.21704235512347486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6986984107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958302,0.00033968966,0.000006685555,0.000110668596,0.000072458846,0.00024315693,0.00007366757,0.000012228187,0.003311269],"genre_scores_gemma":[0.99687994,0.0012387413,0.0001466266,0.000008781058,0.00006716397,0.00000450041,0.000042609026,0.000020415178,0.0015912434],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981109,0.00030540087,0.00023469636,0.00043832962,0.0003042286,0.00060642505],"domain_scores_gemma":[0.9988669,0.000042818097,0.00009588964,0.00060387515,0.0002563062,0.00013418066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005722016,0.00018201546,0.00021651245,0.00020900014,0.0001679273,0.00002582978,0.0006314218,0.00036971885,0.00013550189],"category_scores_gemma":[0.000073024356,0.00015816637,0.00012374905,0.00036044675,0.00039505475,0.000012515312,0.00066918967,0.00037987815,0.00001317201],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022317928,0.0007482801,0.08926426,0.000059859918,0.00018191905,0.00028864367,0.0006030059,0.000002538839,0.89697146,0.0012941876,0.00046133212,0.007892747],"study_design_scores_gemma":[0.0007345922,0.0010794076,0.08258625,0.000022043607,0.000018665809,0.000004553927,0.0069389087,0.000002245325,0.8534889,0.0002296,0.05463107,0.00026376103],"about_ca_topic_score_codex":0.0006815425,"about_ca_topic_score_gemma":0.0010512809,"teacher_disagreement_score":0.054169737,"about_ca_system_score_codex":0.000031415857,"about_ca_system_score_gemma":0.00016562612,"threshold_uncertainty_score":0.6449837},"labels":[],"label_agreement":null},{"id":"W6987248533","doi":"","title":"Siderophore transport through Escherichia coli outer membrane receptor FhuA","year":2005,"lang":"en","type":"dissertation","venue":"eScholarship@McGill (McGill)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Siderophore; Bacterial outer membrane; Escherichia coli; Cysteine; Mutant; Transport protein; Amino acid","score_opus":0.010793599619543582,"score_gpt":0.23015556406657978,"score_spread":0.2193619644470362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6987248533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96355486,0.0009560012,4.3569213e-7,0.00007522329,0.0023567728,0.0008013109,0.0018990167,0.00014845304,0.030207904],"genre_scores_gemma":[0.9666854,0.0039348304,0.0035484307,0.0011386962,0.0005932439,0.00019192122,0.0088758115,0.00039912257,0.014632505],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99537367,0.00018433579,0.001091718,0.0018124322,0.0005122704,0.0010255789],"domain_scores_gemma":[0.99741787,0.000020614036,0.0005838992,0.0013067484,0.00038016986,0.00029072893],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0003373148,0.0011555332,0.0009614199,0.00016177728,0.0005826314,0.00006015688,0.0010411942,0.0035605924,0.0006437479],"category_scores_gemma":[0.0001372611,0.0012015599,0.00061875774,0.0003625605,0.00015598063,0.000030029998,0.00016020384,0.0013734958,0.0003019763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057687546,0.0002302359,0.0000126512805,0.00017322061,0.00036332535,0.000029999646,0.000006365952,0.000008589462,0.9776756,0.0021233382,0.00006216662,0.018737597],"study_design_scores_gemma":[0.0006666182,0.00032949186,0.00019813864,0.000076205804,0.00014113229,0.000014489117,0.00007517701,7.211725e-7,0.5699026,0.00033410746,0.42740634,0.00085497723],"about_ca_topic_score_codex":0.00013298163,"about_ca_topic_score_gemma":0.0019748423,"teacher_disagreement_score":0.42734417,"about_ca_system_score_codex":0.00015664061,"about_ca_system_score_gemma":0.00013341157,"threshold_uncertainty_score":0.9990434},"labels":[],"label_agreement":null},{"id":"W6992632286","doi":"","title":"Mechanism of action of pseudopteroxazole and pseudopterosin G","year":2023,"lang":"en","type":"article","venue":"Dokumentenrepositorium der RUB (Ruhr University Bochum)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; European Regional Development Fund; Deutsche Forschungsgemeinschaft; European Commission","keywords":"Mechanism of action; Cell envelope; Cytotoxicity; Antimycobacterial; Cell; Proteomics; Cell membrane; Bacteria; Cell culture; Antibiotics","score_opus":0.011712785645157578,"score_gpt":0.21430515087344099,"score_spread":0.20259236522828342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6992632286","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99813193,0.000059698978,0.00046117723,0.00013407155,0.0005030113,0.00013427106,0.000027413682,0.000028217699,0.000520201],"genre_scores_gemma":[0.99785405,0.00049867487,0.00041119382,0.000017298626,0.0000918183,7.741985e-7,0.000051363244,0.000011795706,0.0010630428],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991686,0.000033748634,0.0001787514,0.00029828475,0.0001247939,0.00019584874],"domain_scores_gemma":[0.99938834,0.0000057810407,0.0001535007,0.00028537813,0.00010371065,0.00006328086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000093567374,0.00013468771,0.00018519204,0.00014139045,0.0000794945,0.000010247574,0.00019325365,0.00024100416,0.000005874727],"category_scores_gemma":[0.000008501075,0.00014748318,0.000077602046,0.00019710702,0.00013489951,0.000007935481,0.0002880303,0.000070807524,0.0000031486447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001179293,0.00004607364,0.0020126821,0.000040398663,0.00008402227,0.0000075448884,0.000050135404,0.0000044001463,0.99599063,0.0008280304,0.00036488962,0.00045327],"study_design_scores_gemma":[0.00062143436,0.0003871175,0.0055621164,0.000016171696,0.000056094384,0.000019844698,0.0003654473,0.00005366181,0.9862392,0.00007822236,0.0064545926,0.0001460881],"about_ca_topic_score_codex":0.0001005528,"about_ca_topic_score_gemma":0.000017592783,"teacher_disagreement_score":0.009751415,"about_ca_system_score_codex":0.000015531454,"about_ca_system_score_gemma":0.00003359189,"threshold_uncertainty_score":0.601419},"labels":[],"label_agreement":null},{"id":"W6992682164","doi":"","title":"Lipopolysaccharide synthesis and characterization of a core oligosaccharide kinase essential to outer membrane stability","year":2001,"lang":"en","type":"dissertation","venue":"The Atrium (University of Guelph)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bibliothèque et Archives nationales du Québec","funders":"","keywords":"Glycosyltransferase; Mutant; Bacterial outer membrane; Phosphorylation; Gene; Homology (biology); Operon; Biosynthesis","score_opus":0.010547574231829504,"score_gpt":0.21418241826804402,"score_spread":0.2036348440362145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6992682164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99850094,0.000077305885,0.0001460891,0.00034319068,0.00022375469,0.00031802617,0.0002800052,0.000009449003,0.00010125944],"genre_scores_gemma":[0.99719584,0.0010052714,0.0001636804,0.000023519193,0.000099991725,0.0000012290283,0.0006140351,0.000018639414,0.00087778905],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999077,0.000051048934,0.00020034064,0.00036508613,0.0001311808,0.00017532762],"domain_scores_gemma":[0.9989422,0.000016023498,0.00031197976,0.0004830919,0.00018241124,0.000064318156],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016351197,0.00019480924,0.0003364818,0.00010750175,0.00009529061,0.000009361508,0.0004158672,0.00045500175,0.000115484356],"category_scores_gemma":[0.00004908894,0.00019249425,0.00012788674,0.00012684915,0.00014902157,0.000005450726,0.0001891364,0.00011745615,0.0000032452479],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00074009155,0.00004887528,0.00013685206,0.00013334642,0.00009642752,0.0000032208434,0.00028512615,6.8316757e-7,0.9955279,0.000052421186,0.000028892186,0.0029461577],"study_design_scores_gemma":[0.00021800332,0.00017787243,0.025296364,0.000045813613,0.00021810488,0.000005187774,0.0007962952,0.000014041613,0.97196347,0.000023319664,0.0010442667,0.00019727014],"about_ca_topic_score_codex":0.0003813858,"about_ca_topic_score_gemma":0.0006722111,"teacher_disagreement_score":0.025159512,"about_ca_system_score_codex":0.000011438235,"about_ca_system_score_gemma":0.00007735419,"threshold_uncertainty_score":0.78496873},"labels":[],"label_agreement":null},{"id":"W6993101780","doi":"","title":"Norman Jones Jr., Black Heritage Collection : A Collection Guide","year":2005,"lang":"en","type":"article","venue":"Digital Commons - University of South Florida (University of South Florida)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Ephemera; Variety (cybernetics); Public history; Public access; World heritage","score_opus":0.00886655999831385,"score_gpt":0.17805140623223445,"score_spread":0.1691848462339206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6993101780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882527,0.00005493745,0.0024454414,0.00032749222,0.00024448198,0.00027445145,0.000408523,0.00006466158,0.007927301],"genre_scores_gemma":[0.9932503,0.000075834316,0.0012034681,0.000019759684,0.00015331969,1.05500575e-7,0.00017861184,0.000022729024,0.0050958497],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99860996,0.000045734872,0.00022900502,0.0005012238,0.00025161973,0.00036248044],"domain_scores_gemma":[0.998678,0.000014703825,0.00032472718,0.00051774824,0.0003021372,0.0001626559],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012118127,0.00027884886,0.00040466632,0.00029648864,0.0004309965,0.00003182868,0.0006106909,0.0004681159,0.00008225857],"category_scores_gemma":[0.00002947652,0.0003873778,0.00030414006,0.00054762885,0.00070784404,0.00006273782,0.00051348365,0.00021231343,0.00005411156],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.017323446,0.002360261,0.22818893,0.00086253235,0.004163206,0.00023874737,0.05886583,0.003084374,0.60208344,0.0019801233,0.062031925,0.018817203],"study_design_scores_gemma":[0.01618988,0.00572021,0.0985171,0.0002799709,0.0009396397,0.00007744153,0.13906124,0.0033703875,0.079472676,0.00017855165,0.65262264,0.003570272],"about_ca_topic_score_codex":0.00021561263,"about_ca_topic_score_gemma":0.0009083852,"teacher_disagreement_score":0.5905907,"about_ca_system_score_codex":0.0000877869,"about_ca_system_score_gemma":0.00016326847,"threshold_uncertainty_score":0.9998578},"labels":[],"label_agreement":null},{"id":"W6995433087","doi":"","title":"One Company, Diverse Workplaces. The Social Construction of Employment Practices in Western and Eastern Europe","year":2012,"lang":"en","type":"article","venue":"Research Portal (Queen's University Belfast)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Social constructionism; Construction industry; Work (physics); Government (linguistics)","score_opus":0.0375543868524999,"score_gpt":0.3014684829441218,"score_spread":0.2639140960916219,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6995433087","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99736536,0.00005145456,0.00001435537,0.001574191,0.00006264549,0.00019221958,0.000022369084,0.0000060501843,0.0007113621],"genre_scores_gemma":[0.9984837,0.00051826885,0.00012019174,0.00001486307,0.00012208978,7.864116e-7,0.00002529915,0.000008214027,0.00070656865],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99881107,0.00028147682,0.0001265565,0.00021892437,0.0002223644,0.00033961612],"domain_scores_gemma":[0.99941486,0.000026418462,0.00015833543,0.00018584821,0.00013636633,0.0000781574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049277727,0.00009376553,0.00013692018,0.00011649809,0.00017731386,0.000019768479,0.00023763257,0.00017349901,0.000022899178],"category_scores_gemma":[0.00004679801,0.0000877011,0.000031975327,0.0002379596,0.0006005608,0.000018102153,0.0006094586,0.00025803508,0.000005433385],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011412823,0.0006907408,0.83222646,0.00007431819,0.00025948128,0.00003470451,0.0010806089,0.0000037226635,0.14702952,0.0040588416,0.000600619,0.012799692],"study_design_scores_gemma":[0.0025469593,0.0012412785,0.78048444,0.00008102837,0.000089773304,0.00003521465,0.013213194,0.000010418644,0.054963596,0.00005405859,0.14677949,0.0005005584],"about_ca_topic_score_codex":0.00051811826,"about_ca_topic_score_gemma":0.00015701677,"teacher_disagreement_score":0.14617887,"about_ca_system_score_codex":0.000017312625,"about_ca_system_score_gemma":0.00006906579,"threshold_uncertainty_score":0.3576347},"labels":[],"label_agreement":null},{"id":"W6995514091","doi":"","title":"Ontario Chamber of Commerce Event, 2015","year":2021,"lang":"en","type":"other","venue":"Deep Blue (University of Michigan)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Government (linguistics); Work (physics); Payment; Agency (philosophy); Perspective (graphical)","score_opus":0.006583380011529984,"score_gpt":0.19579787551421535,"score_spread":0.18921449550268538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6995514091","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9375218,0.002504942,0.0007177881,0.00014352193,0.0003362292,0.00017819303,0.00011083008,0.000013024688,0.05847367],"genre_scores_gemma":[0.13725114,0.001748799,0.0025846155,0.00008589228,0.00018093057,2.8997945e-7,0.0012387113,0.00013994389,0.8567697],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99930596,0.0000350482,0.0001095664,0.00030696252,0.00008534322,0.00015712225],"domain_scores_gemma":[0.9991567,0.0000026776415,0.00024659056,0.00048371856,0.000060431597,0.000049881648],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000047836787,0.000170812,0.0003343447,0.00009329589,0.000024224588,0.0000022916638,0.00027976872,0.00072628545,0.0022576645],"category_scores_gemma":[0.000004627759,0.00021677482,0.00016394003,0.000071024035,0.00018887578,7.41544e-7,0.00031994717,0.00014179636,0.000015519328],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017963395,0.0003719038,0.00029745724,0.00028409917,0.0011148289,0.000050313483,0.0034726737,0.000008986872,0.942378,0.00013414609,0.049207814,0.0025001755],"study_design_scores_gemma":[0.0005462411,0.00016590203,0.00046629677,0.000080545484,0.000082922066,0.000012687537,0.0012126903,0.000003507094,0.022476995,0.0000054686466,0.9747104,0.00023634621],"about_ca_topic_score_codex":0.005908183,"about_ca_topic_score_gemma":0.6015096,"teacher_disagreement_score":0.9255026,"about_ca_system_score_codex":0.000009918175,"about_ca_system_score_gemma":0.00013357877,"threshold_uncertainty_score":0.9986544},"labels":[],"label_agreement":null},{"id":"W6995961099","doi":"","title":"Preserving the integrity of the highly dynamic bacterial replisome","year":2021,"lang":"en","type":"dissertation","venue":"eScholarship@McGill (McGill)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fonds de recherche du Québec – Nature et technologies; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Replisome; DNA; Bacteria; DNA replication; Escherichia coli; Mutation","score_opus":0.009250739843696003,"score_gpt":0.2319838288566276,"score_spread":0.2227330890129316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6995961099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98905617,0.0007110053,1.2495595e-7,0.00013809899,0.003406281,0.00054436614,0.0010815222,0.000031009553,0.005031399],"genre_scores_gemma":[0.9903528,0.00085416395,0.0001786303,0.00013925713,0.00014846519,0.00006881039,0.0018239381,0.000110819004,0.006323133],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99692553,0.00044581006,0.0007694015,0.000977536,0.00038677777,0.0004949619],"domain_scores_gemma":[0.9966897,0.000046480163,0.0006924166,0.0020291652,0.00045218386,0.000090106594],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005775171,0.0005470053,0.0005359925,0.00007882226,0.00058861455,0.00007073464,0.0017392971,0.0017342931,0.000115379946],"category_scores_gemma":[0.00090679614,0.0003780678,0.00051248906,0.00035054414,0.00017641294,0.000011809764,0.00088594365,0.0013920967,0.000009624107],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019471686,0.00008634875,0.000014652734,0.00012871798,0.00020619333,0.0000036141194,0.0000029047417,0.000002601659,0.98516107,0.0032777144,0.000018826295,0.010902659],"study_design_scores_gemma":[0.00039593308,0.00017192175,0.0023721438,0.00017433739,0.0001490171,0.000022448618,0.00013025722,0.0000044119543,0.8934353,0.0023160074,0.10038783,0.0004403781],"about_ca_topic_score_codex":0.000237615,"about_ca_topic_score_gemma":0.0040612915,"teacher_disagreement_score":0.10036901,"about_ca_system_score_codex":0.00009344496,"about_ca_system_score_gemma":0.00015560827,"threshold_uncertainty_score":0.99986714},"labels":[],"label_agreement":null},{"id":"W6996008608","doi":"","title":"A Qui Profitera la « Fenêtre Démographique » des\\nPays du Maghreb?","year":2009,"lang":"en","type":"article","venue":"Bioline International (Bioline International)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Quarter (Canadian coin); Competition (biology); Key (lock); Developed country; Phase (matter)","score_opus":0.00624622212744077,"score_gpt":0.2470872978916443,"score_spread":0.24084107576420352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6996008608","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9677037,0.0004107072,0.0027704635,0.015321142,0.0019481943,0.00034293675,0.0004070626,0.00012629852,0.010969507],"genre_scores_gemma":[0.98431724,0.0017948517,0.0046229404,0.0018850948,0.003340239,0.000037298363,0.0020774687,0.000040066872,0.0018848013],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99793696,0.0000702801,0.00060116965,0.00070337695,0.00031715163,0.00037104584],"domain_scores_gemma":[0.9985281,0.000025008954,0.00025097452,0.00041268836,0.00064668723,0.00013651818],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029311722,0.0003847305,0.00024224159,0.00032616546,0.000093371906,0.00014381485,0.0011092251,0.00047594748,0.00022222372],"category_scores_gemma":[0.00026981303,0.00035202957,0.00027925218,0.00019539328,0.00023291267,0.000021884212,0.00030136795,0.00027028855,0.000057958765],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057477655,0.00064855826,0.016236365,0.000009165417,0.0003828284,0.00004514926,0.000049379727,0.000048791346,0.93442893,0.009759358,0.008679826,0.029136872],"study_design_scores_gemma":[0.002088004,0.00064183446,0.029267654,0.00008294323,0.000032341602,0.0004492795,0.000049938273,0.0008676418,0.1947979,0.0038214514,0.76716924,0.0007317404],"about_ca_topic_score_codex":0.00005584939,"about_ca_topic_score_gemma":0.00007759552,"teacher_disagreement_score":0.75848943,"about_ca_system_score_codex":0.000069100905,"about_ca_system_score_gemma":0.00009692783,"threshold_uncertainty_score":0.9998932},"labels":[],"label_agreement":null},{"id":"W6999143005","doi":"","title":"Characterization of a Dipartite Iron Uptake System fromUropathogenic <i>Escherichia coli</i> Strain","year":2011,"lang":"en","type":"article","venue":"Lincoln (University of Nebraska)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Basic Energy Sciences; National Center for Research Resources; National Institute of General Medical Sciences; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Robert Koch Institut; Deutsche Forschungsgemeinschaft; Colorado State University; U.S. Department of Energy","keywords":"Periplasmic space; Permease; Escherichia coli; Operon; Strain (injury); Mutant; Siderophore; Protein subunit; Copper; Transport protein","score_opus":0.010103614496109211,"score_gpt":0.16926706107639886,"score_spread":0.15916344658028964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6999143005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966816,0.000038132966,0.00178215,0.00003201866,0.00013793731,0.00017986984,0.0002644382,0.000014970215,0.00086888764],"genre_scores_gemma":[0.99664915,0.00009783464,0.002649603,0.000019893474,0.00005249173,5.5844134e-7,0.00015374106,0.0000125311535,0.00036419567],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992884,0.00005046903,0.00016713444,0.0002543312,0.00008443258,0.00015523603],"domain_scores_gemma":[0.99931794,0.0000023786392,0.00023376825,0.00029883083,0.000089015084,0.000058040518],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009810639,0.00011560604,0.00020171555,0.000059403676,0.000052275675,0.000003211147,0.00027403183,0.000274712,0.00006952733],"category_scores_gemma":[0.000006480781,0.00013981681,0.000100083416,0.00014038244,0.000121589575,0.000005711217,0.00014717352,0.00006273974,0.000010927355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015172713,0.00008648411,0.00096871855,0.000059418628,0.000037556416,0.0000041114436,0.00013613104,0.0000013154865,0.99655145,0.00036151512,0.0000108139675,0.0016307591],"study_design_scores_gemma":[0.0009966634,0.00089879584,0.19676384,0.000049539856,0.00009791057,0.000006435582,0.0005698543,0.00012714745,0.78741807,0.000014324472,0.012778157,0.00027927838],"about_ca_topic_score_codex":0.000070623115,"about_ca_topic_score_gemma":0.00014363321,"teacher_disagreement_score":0.2091334,"about_ca_system_score_codex":0.000010245151,"about_ca_system_score_gemma":0.00006259458,"threshold_uncertainty_score":0.5701564},"labels":[],"label_agreement":null},{"id":"W6999759726","doi":"","title":"Diagnosis and mitigation of the systemic impact of genome reduction in &lt;i&gt;Escherichia coli&lt;/i&gt; DGF-298","year":2024,"lang":"en","type":"article","venue":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Genome; Reduction (mathematics); Identification (biology); Human genome; Genomics","score_opus":0.006649744639299046,"score_gpt":0.20305637811078137,"score_spread":0.19640663347148232,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6999759726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99550056,0.0018656924,0.00061357557,0.00033003688,0.00009850754,0.00060375885,0.000191211,0.000034857916,0.0007617962],"genre_scores_gemma":[0.99384004,0.0042883186,0.0014620753,0.0000058899527,0.000029649109,6.484836e-7,0.000033285174,0.000022266964,0.0003178336],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980212,0.00020762243,0.00048191755,0.00063190697,0.00031878255,0.00033858643],"domain_scores_gemma":[0.9983924,0.00009109867,0.00042701254,0.000710829,0.0002491228,0.00012954717],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004630469,0.00029824695,0.0006546429,0.00032347892,0.00010415009,0.000010003805,0.0009230226,0.001043497,0.00011970759],"category_scores_gemma":[0.00012016384,0.00030400496,0.0004908811,0.0009013769,0.0014520059,0.00003172976,0.0009088844,0.00040280423,0.000004745856],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045619704,0.00024593325,0.0016491057,0.00025443992,0.00016051532,0.000017889135,0.000054678174,0.00006968048,0.9946781,0.00074046507,0.00065720506,0.0010158393],"study_design_scores_gemma":[0.0055858083,0.005022339,0.48103344,0.0025296023,0.0013900901,0.00042649635,0.0009319674,0.000569319,0.4764298,0.0010641441,0.023160197,0.0018567794],"about_ca_topic_score_codex":0.00020109751,"about_ca_topic_score_gemma":0.00044369907,"teacher_disagreement_score":0.51824826,"about_ca_system_score_codex":0.0002022892,"about_ca_system_score_gemma":0.00029330121,"threshold_uncertainty_score":0.99994123},"labels":[],"label_agreement":null},{"id":"W7000828683","doi":"","title":"Identification of RpoS Regulated Genes and their Functions in Escherichia Coli","year":2003,"lang":"en","type":"dissertation","venue":"MacSphere (McMaster University)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Nucleofection; Gestational period; TSG101; Diafiltration; Dysgeusia; Liquation; Emperipolesis; Triacetin; Fusible alloy","score_opus":0.006117959031484131,"score_gpt":0.18508824719833983,"score_spread":0.1789702881668557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7000828683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.984545,0.00072482193,0.00009066984,0.0000206935,0.00025283278,0.00021852716,0.000049463022,0.000008839856,0.014089167],"genre_scores_gemma":[0.66414225,0.00070189283,0.00010146817,0.0000139507565,0.000032901007,0.0000021414348,0.0006259858,0.000028334658,0.3343511],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991819,0.00006142937,0.00021170713,0.00035609276,0.000045344947,0.0001435231],"domain_scores_gemma":[0.9994463,0.0000037165203,0.00020104549,0.0002305836,0.00008359525,0.000034797336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053520307,0.00018743238,0.00020361744,0.00012542527,0.00004502476,0.000014625937,0.00015616586,0.00060659077,0.0007898534],"category_scores_gemma":[0.000008361086,0.00019971913,0.000060404167,0.00026156873,0.00006834855,0.000003899208,0.00004921843,0.00011587719,0.000002383685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015747822,0.00004328317,0.0003712348,0.00005546834,0.00006338786,0.0000016296557,0.000045489305,0.000010375102,0.96320665,0.000092283626,0.000059584385,0.03589312],"study_design_scores_gemma":[0.00058619806,0.00016168052,0.0036725998,0.000036291734,0.000054595475,0.000002319329,0.0016981992,0.000028765351,0.82870376,0.000042874417,0.16474478,0.00026793874],"about_ca_topic_score_codex":0.000037068396,"about_ca_topic_score_gemma":0.0009208077,"teacher_disagreement_score":0.32040274,"about_ca_system_score_codex":0.000017652956,"about_ca_system_score_gemma":0.0000669754,"threshold_uncertainty_score":0.8648341},"labels":[],"label_agreement":null},{"id":"W7000956038","doi":"","title":"High-resolution electron microscopy of energy-transducing proteins of «Escherichia coli»","year":2012,"lang":"en","type":"other","venue":"Library and Archives Canada (Government of Canada)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Membrane; Electron microscope; Cytoplasm; Molecular mass; Particle (ecology); Membrane protein; Cryo-electron microscopy","score_opus":0.0017588923036778125,"score_gpt":0.14614340358040487,"score_spread":0.14438451127672705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7000956038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.54282606,0.019010892,0.0015664237,0.0015536069,0.0013965742,0.0011730472,0.0039868676,0.000029804107,0.42845675],"genre_scores_gemma":[0.9384411,0.0017984532,0.0044530765,0.00013038071,0.00020241641,0.000010018468,0.000116543175,0.000116057294,0.054731984],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885565,0.00004045893,0.00026262895,0.00022468371,0.00036778103,0.00024877768],"domain_scores_gemma":[0.99931395,0.000008290436,0.00034238282,0.00024813073,9.210906e-7,0.00008634851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000008049246,0.00020216774,0.00031773307,0.00002778659,0.000026043464,0.0000031183822,0.0001995942,0.00018116138,0.000042069176],"category_scores_gemma":[0.000001393836,0.00019895127,0.000037533195,0.00004645347,0.0001215799,0.0000039977663,0.00010896291,0.000083201696,7.1416384e-10],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023562775,0.000031825246,0.00034523636,0.00021524601,0.00012275246,0.0000011121602,0.0000029078808,0.0000028890759,0.98969835,0.005201799,0.0033424024,0.00079982216],"study_design_scores_gemma":[0.00018880375,0.00018352513,0.0006453217,0.00008607342,0.000026648097,0.0000012434853,0.000020408177,0.0000046170203,0.7974423,0.00003442052,0.20121731,0.00014934792],"about_ca_topic_score_codex":0.0068725417,"about_ca_topic_score_gemma":0.028873473,"teacher_disagreement_score":0.39561504,"about_ca_system_score_codex":0.0000024777216,"about_ca_system_score_gemma":0.00079173746,"threshold_uncertainty_score":0.9997408},"labels":[],"label_agreement":null},{"id":"W7002377303","doi":"","title":"NMR studies if the Galactitol-specific PTS proteins IIA and IIB","year":2005,"lang":"en","type":"dissertation","venue":"eScholarship@McGill (McGill)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Isothermal titration calorimetry; Nuclear magnetic resonance spectroscopy; Permease; Transmembrane protein; Phosphorylation; Titration; Enzyme; Cytoplasm","score_opus":0.0156763180976367,"score_gpt":0.25047349834415455,"score_spread":0.23479718024651786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7002377303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9808987,0.008801108,1.0657029e-7,0.00014633796,0.0011207561,0.00095782045,0.0003994296,0.000070962735,0.0076048197],"genre_scores_gemma":[0.97293895,0.017981905,0.00045964366,0.00023216936,0.00043851117,0.00022935007,0.0007945162,0.0001541689,0.0067707673],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968984,0.00021186112,0.000645558,0.0012330512,0.0003481008,0.00066300563],"domain_scores_gemma":[0.99795204,0.00003932082,0.00045379502,0.0010282787,0.00036498412,0.00016155836],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00047871764,0.0007605558,0.00061724044,0.00015227684,0.0009944446,0.00009940948,0.0007031936,0.0015338792,0.00005304929],"category_scores_gemma":[0.00027636136,0.0006063405,0.0002496103,0.00023591577,0.00025064117,0.000017177075,0.00039252674,0.001007293,0.000060071183],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026786,0.00010415983,0.000015333086,0.000116668896,0.000418397,0.000012236785,0.000008763991,0.000003199928,0.8986412,0.0039658984,0.00007504118,0.0963712],"study_design_scores_gemma":[0.0005331427,0.00035522904,0.0010817243,0.00009474057,0.0001139693,0.000039335682,0.00035021457,8.3207993e-7,0.5479155,0.0012185486,0.44765428,0.00064246246],"about_ca_topic_score_codex":0.0000317272,"about_ca_topic_score_gemma":0.0012382284,"teacher_disagreement_score":0.44757923,"about_ca_system_score_codex":0.000110982575,"about_ca_system_score_gemma":0.000051353796,"threshold_uncertainty_score":0.99976236},"labels":[],"label_agreement":null},{"id":"W7006157793","doi":"","title":"Sobre el papel del sistema SOS, la recombinación y el intercambio horizontal de genes en la evolución bacteriana","year":2015,"lang":"es","type":"dissertation","venue":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; European Regional Development Fund; Seventh Framework Programme; Ministerio de Ciencia e Innovación; Instituto de Salud Carlos III; Ministerio de Economía y Competitividad","keywords":"Population; Context (archaeology); Epidemiological surveillance","score_opus":0.04817075690441904,"score_gpt":0.3385889911511421,"score_spread":0.2904182342467231,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7006157793","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8708949,0.004654816,0.000070806585,0.00097006676,0.0014539427,0.0014286515,0.0037763235,0.00012045431,0.11663],"genre_scores_gemma":[0.9720594,0.006523388,0.0002242838,0.00014951374,0.0017241435,0.00034006042,0.008774815,0.00028242773,0.0099219475],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9873173,0.0010039847,0.0013180561,0.002141364,0.006459955,0.0017593036],"domain_scores_gemma":[0.97893757,0.0006747751,0.0005575525,0.0010867093,0.017937865,0.0008055199],"candidate_categories":["metaresearch","metaepi_narrow","scholarly_communication","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.008809788,0.0011765048,0.0010470464,0.0006249569,0.0005097242,0.0017131085,0.0020584785,0.0036095942,0.00012433867],"category_scores_gemma":[0.014671619,0.0012453847,0.0006063128,0.00089493085,0.00095595384,0.00012064119,0.0010660196,0.0017724582,0.00035574465],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":true,"study_design_scores_codex":[0.0024586373,0.001986161,0.0008770537,0.0010486969,0.0016806724,0.00022296917,0.00066521985,0.000013427509,0.79480964,0.012264779,0.09199542,0.091977306],"study_design_scores_gemma":[0.0026820893,0.0023137163,0.0056001036,0.00061480684,0.00014393886,0.00031805906,0.0019111435,0.00017516552,0.03400429,0.016773399,0.9335465,0.0019168019],"about_ca_topic_score_codex":0.00038627695,"about_ca_topic_score_gemma":0.0015950922,"teacher_disagreement_score":0.84155107,"about_ca_system_score_codex":0.004358781,"about_ca_system_score_gemma":0.024427531,"threshold_uncertainty_score":0.9994633},"labels":[],"label_agreement":null},{"id":"W7014973179","doi":"","title":"The redox potential interferes with the expression of laminin binding molecules in Bacteroides fragilis","year":2008,"lang":"en","type":"article","venue":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Queen's University","keywords":"Laminin; Bacteroides fragilis; Fibronectin; Extracellular matrix; Population; Strain (injury); Ruthenium red; Extracellular","score_opus":0.010984501789050253,"score_gpt":0.2161692901728291,"score_spread":0.20518478838377885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7014973179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992364,0.00046240416,0.0005859993,0.0042968113,0.00018875962,0.00021959645,0.000018142091,0.000024270037,0.0018400495],"genre_scores_gemma":[0.9978893,0.00063725526,0.0009621284,0.00004882403,0.00018678287,0.00006530964,0.00006305618,0.000024994308,0.00012234903],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99837905,0.00022113918,0.00037107567,0.0003936522,0.00026361158,0.00037146776],"domain_scores_gemma":[0.99897593,0.000054522534,0.00023737998,0.0004891477,0.00016178256,0.000081258324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028670562,0.00023083782,0.0002109263,0.00011697694,0.00043417147,0.00005285666,0.000577546,0.0003587501,0.000004947818],"category_scores_gemma":[0.00014309831,0.00013915455,0.000096379794,0.00024678203,0.00010175391,0.000014222454,0.00028213207,0.00030114307,0.0000010008282],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005474422,0.00014567876,0.0010805994,0.000015581618,0.00005758055,0.000044988334,0.00030550518,0.00004926765,0.98184,0.014359703,0.00039094198,0.0011626775],"study_design_scores_gemma":[0.0008218616,0.0002857098,0.010498187,0.000061489976,0.000020320173,0.00070559134,0.00047498685,0.000047210415,0.5195494,0.000039225706,0.46723768,0.00025827842],"about_ca_topic_score_codex":0.0000014921088,"about_ca_topic_score_gemma":0.00015179644,"teacher_disagreement_score":0.46684673,"about_ca_system_score_codex":0.000046988753,"about_ca_system_score_gemma":0.00018919681,"threshold_uncertainty_score":0.56745577},"labels":[],"label_agreement":null},{"id":"W7017582960","doi":"","title":"Biochemistry and physiology of NhaP-type antiporters in Vibrio cholerae","year":2010,"lang":"en","type":"dissertation","venue":"Mspace (University of Manitoba)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Antiporters; Vibrio cholerae; Intracellular; Bacteria; Intracellular pH; Mutant; Vibrio","score_opus":0.005219969546348405,"score_gpt":0.19185727412865383,"score_spread":0.18663730458230543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7017582960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99881184,0.00038438934,0.0000034408984,0.000080938196,0.00026469445,0.0001076702,0.0000305495,0.0000053242316,0.00031113342],"genre_scores_gemma":[0.9975066,0.0010002746,0.00040579736,0.000009700698,0.000050239327,1.6465421e-7,0.0006334019,0.00001526318,0.00037852625],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992778,0.000019469404,0.00011967468,0.00035531912,0.000068524954,0.00015923798],"domain_scores_gemma":[0.9993024,0.000004619263,0.0002496836,0.0003037407,0.000101318845,0.000038227223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006021583,0.00016905107,0.00031174824,0.000111009205,0.000032400516,0.0000035910916,0.0002547717,0.0010053113,0.000006632801],"category_scores_gemma":[0.000017315058,0.00021644104,0.00006916805,0.00010090138,0.0002023003,0.0000025955876,0.000110990935,0.00023969324,0.0000014878465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028958466,0.000048546553,0.0032668482,0.00015462404,0.000048801157,0.000003644423,0.000041756506,0.0000010596469,0.99474835,0.00000716959,0.00014579967,0.001243809],"study_design_scores_gemma":[0.00052888267,0.0002498651,0.25347212,0.000050997252,0.000042345167,0.0000057866964,0.0015421199,0.000008931043,0.74069715,0.00002262978,0.0031605903,0.00021856753],"about_ca_topic_score_codex":0.0005462396,"about_ca_topic_score_gemma":0.062323596,"teacher_disagreement_score":0.25405118,"about_ca_system_score_codex":0.00000827263,"about_ca_system_score_gemma":0.00007991697,"threshold_uncertainty_score":0.95478654},"labels":[],"label_agreement":null},{"id":"W7019068455","doi":"","title":"Electrophysiological properties of porin, the major outer membrane protein of Haemophilus influenzae","year":2002,"lang":"en","type":"dissertation","venue":"eScholarship@McGill (McGill)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Medical Research Council Canada; McGill University","keywords":"Bacterial outer membrane; Periplasmic space; Haemophilus influenzae; Bacteria; Electrophysiology; Membrane; Membrane protein","score_opus":0.014161574944913918,"score_gpt":0.21401918304335696,"score_spread":0.19985760809844305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7019068455","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994683,0.0014119671,5.2425282e-8,0.00003487386,0.00031383432,0.00094070175,0.0003568093,0.000031048832,0.0022276808],"genre_scores_gemma":[0.9954696,0.00058299256,0.00019624074,0.00010170132,0.000093960734,0.00014941886,0.000391349,0.00009408183,0.0029206225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99719733,0.00023250245,0.0009024535,0.0007899324,0.00035850436,0.0005192858],"domain_scores_gemma":[0.9977144,0.00001201146,0.00074682874,0.0009791683,0.000456366,0.00009124497],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000283222,0.00058122794,0.00073992816,0.00013516277,0.00025240798,0.00001937605,0.00095073355,0.0015471216,0.00006799162],"category_scores_gemma":[0.0003056421,0.00040747432,0.0003873968,0.00025319183,0.00026771106,0.0000102838585,0.00025926915,0.0007588149,0.000018109597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007803419,0.0001855084,0.000002587292,0.00032336704,0.00027297623,0.000006120883,0.0000024557319,0.0000038377116,0.9871155,0.0018216937,0.0000034511309,0.009482182],"study_design_scores_gemma":[0.0005329966,0.0012069818,0.0002202424,0.0001704759,0.00012365749,0.000017720973,0.00003711149,0.0000020406687,0.9818292,0.00085908105,0.014530996,0.00046949263],"about_ca_topic_score_codex":0.000100891855,"about_ca_topic_score_gemma":0.00014834538,"teacher_disagreement_score":0.014527545,"about_ca_system_score_codex":0.000041872467,"about_ca_system_score_gemma":0.00005117639,"threshold_uncertainty_score":0.9998377},"labels":[],"label_agreement":null},{"id":"W7019472985","doi":"","title":"Heme activated protein 1 (HAP1) as a model for study of mechanism of gene activation","year":2000,"lang":"en","type":"dissertation","venue":"eScholarship@McGill (McGill)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Medical Research Council Canada","keywords":"DNA; Binding site; Heme; Plasma protein binding; Mutagenesis; DNA-binding protein; Gene isoform; Chromatin; Gene; Transcription factor","score_opus":0.0144485086948354,"score_gpt":0.2456790239987849,"score_spread":0.2312305153039495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7019472985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99510103,0.000051690444,0.000006472039,0.0000059814665,0.00017221548,0.002635109,0.00097655813,0.00003685088,0.0010140883],"genre_scores_gemma":[0.9929916,0.000095027215,0.001459279,0.000029947121,0.000039722345,0.0004700545,0.0023048073,0.00015177422,0.0024577403],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972371,0.00012266578,0.00089918904,0.00096082786,0.00035675883,0.00042344525],"domain_scores_gemma":[0.99763113,0.000016549058,0.00088609796,0.00082062796,0.00054130284,0.000104315106],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00029971194,0.00057001156,0.0007192579,0.00026776982,0.0002299678,0.000015272493,0.0005842071,0.0015968336,0.000037359274],"category_scores_gemma":[0.00021177717,0.00060177554,0.00027958245,0.00025893026,0.000044111923,0.00001617624,0.00009758535,0.0004161658,0.0000038271933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025075162,0.000854271,6.012712e-7,0.00019939996,0.00036389352,0.0000011980303,0.000012527691,0.00009185462,0.9783027,0.0030254442,9.377226e-7,0.014639633],"study_design_scores_gemma":[0.0017608115,0.0025622176,0.000027140928,0.0001150037,0.00015912589,0.0000031362677,0.00018845685,0.00013731285,0.98703206,0.0062822066,0.0011795409,0.0005530041],"about_ca_topic_score_codex":0.00014879595,"about_ca_topic_score_gemma":0.00029081095,"teacher_disagreement_score":0.014086629,"about_ca_system_score_codex":0.000075943186,"about_ca_system_score_gemma":0.00012554694,"threshold_uncertainty_score":0.9996993},"labels":[],"label_agreement":null},{"id":"W7019665711","doi":"","title":"Identification and characterization of key regulatory elements involved in virulence modulations of Pseudomonas aeruginosa","year":2021,"lang":"en","type":"dissertation","venue":"Mspace (University of Manitoba)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Pseudomonas aeruginosa; Virulence; Biofilm; Transcriptome; Secretion; Type three secretion system; Gene; Escherichia coli; Type VI secretion system","score_opus":0.007698194369719672,"score_gpt":0.19823823705729376,"score_spread":0.1905400426875741,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7019665711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992394,0.00016424146,0.00012249808,0.00005793718,0.000117660966,0.00017202146,0.00008389817,0.000003094813,0.00003926396],"genre_scores_gemma":[0.99599445,0.0012614001,0.0003758151,0.0000025401268,0.000015595044,5.5826115e-7,0.0021065094,0.000009228051,0.00023389002],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992969,0.000044439257,0.00020438163,0.0002576781,0.00011122709,0.00008534441],"domain_scores_gemma":[0.9990277,0.0000036073518,0.00048677775,0.00026126576,0.00020009416,0.000020512021],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009510966,0.000107784566,0.00021946144,0.00015638226,0.000032325785,0.0000042299625,0.00015293353,0.00036444125,0.0000030670449],"category_scores_gemma":[0.000015993495,0.00015258776,0.000052273528,0.00014310887,0.00008924578,0.000007702407,0.00007408251,0.000069229005,3.4460663e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007700231,0.00006268541,0.019580219,0.00018517,0.000039948172,8.432299e-7,0.00009097971,0.000004518772,0.9789643,0.00010426948,0.000011232634,0.00087879755],"study_design_scores_gemma":[0.00023556674,0.00005387861,0.5306256,0.00007754599,0.00003278891,3.235677e-7,0.0014268018,0.000057772344,0.4672206,0.000021208607,0.00016349471,0.000084430714],"about_ca_topic_score_codex":0.00017929988,"about_ca_topic_score_gemma":0.034043435,"teacher_disagreement_score":0.5117437,"about_ca_system_score_codex":0.000014211976,"about_ca_system_score_gemma":0.00007047048,"threshold_uncertainty_score":0.98358274},"labels":[],"label_agreement":null},{"id":"W7023920236","doi":"","title":"PmrC and CptA-mediated regulation of outer membrane vesicle production in «Citrobacter rodentium»","year":2018,"lang":"en","type":"dissertation","venue":"eScholarship@McGill (McGill)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Faculty of Medicine, McGill University; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Vesicle; Bacterial outer membrane; Membrane; Cell membrane","score_opus":0.00784247560757037,"score_gpt":0.21618382862827323,"score_spread":0.20834135302070286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7023920236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99638766,0.00021314209,1.194008e-7,0.000029101853,0.0011242586,0.00049446285,0.00026929245,0.000030576048,0.0014514042],"genre_scores_gemma":[0.9934112,0.00061914825,0.0005215201,0.000045844965,0.00015016076,0.00004197991,0.0026640557,0.00008832772,0.002457808],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976084,0.00014088833,0.0006826134,0.00095227547,0.00023985733,0.00037596514],"domain_scores_gemma":[0.9985075,0.000010808737,0.00046581583,0.0006067918,0.0003171741,0.00009190155],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00042498196,0.00041782847,0.00045902943,0.00028060182,0.00014271706,0.00002744478,0.00027270484,0.0013288464,0.000055075],"category_scores_gemma":[0.0002924849,0.00043699227,0.000120774086,0.00027459225,0.00011835296,0.000024920908,0.00013059405,0.0003880144,0.000021000285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042178904,0.000109080975,0.000103489874,0.00015864529,0.000080964084,0.0000027375652,0.0000045738334,0.0000025051638,0.9794458,0.00020889207,0.000008471259,0.019453047],"study_design_scores_gemma":[0.0006933079,0.00033801608,0.0151253985,0.00012546776,0.00007084607,0.00001625832,0.00003781396,0.000005721541,0.96526325,0.0007251674,0.017160071,0.00043869048],"about_ca_topic_score_codex":0.00007604887,"about_ca_topic_score_gemma":0.0013424942,"teacher_disagreement_score":0.019014357,"about_ca_system_score_codex":0.00006148917,"about_ca_system_score_gemma":0.000034572207,"threshold_uncertainty_score":0.99996763},"labels":[],"label_agreement":null},{"id":"W7029930993","doi":"","title":"L'influence de la culture organisationnelle sur l'épuisement professionnel ; étude comparative entre cols blancs et policiers d'un service de police urbain.","year":2013,"lang":"fr","type":"other","venue":"Library and Archives Canada (Government of Canada)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"State police; Police brutality; Cultural environment; Dissimilation","score_opus":0.003502499697767705,"score_gpt":0.1755049073216369,"score_spread":0.1720024076238692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7029930993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8500932,0.0014539215,0.00010968447,0.012138291,0.00018516132,0.0007690128,0.00086008146,0.000012860054,0.13437782],"genre_scores_gemma":[0.88946,0.0018524553,0.0025956046,0.008697676,0.00022538003,0.000038237435,0.00011572724,0.00007999166,0.09693492],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978913,0.00031806185,0.00030573903,0.0004288902,0.00051973277,0.00053626456],"domain_scores_gemma":[0.9989013,0.00008505448,0.00034207874,0.0003127976,0.0000052199575,0.00035352333],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000024999226,0.00042102725,0.00039190048,0.000026078083,0.00015450582,0.000044776316,0.0004458272,0.00037125952,0.00028461634],"category_scores_gemma":[0.0000072185885,0.0003943971,0.000042102423,0.000095651165,0.00020495417,0.000017287219,0.00038971638,0.0002941812,5.0266475e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001964962,0.00011637613,0.006551122,0.00034335835,0.0004314902,0.000014060827,0.0014430183,0.00031190214,0.9493979,0.01688415,0.02375538,0.0005547148],"study_design_scores_gemma":[0.0006260149,0.0001607491,0.020814897,0.00022666692,0.0000691037,0.000017301534,0.0044850726,0.0004587264,0.5415451,0.00021324056,0.43092424,0.0004588759],"about_ca_topic_score_codex":0.019463496,"about_ca_topic_score_gemma":0.062162586,"teacher_disagreement_score":0.40785283,"about_ca_system_score_codex":0.000029645362,"about_ca_system_score_gemma":0.0031194407,"threshold_uncertainty_score":0.9998508},"labels":[],"label_agreement":null},{"id":"W7030355464","doi":"","title":"Now Workshop with Cleo Palacio-Quentin","year":2012,"lang":"en","type":"other","venue":"Bulletin of Miscellaneous Information (Royal Gardens Kew)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Session (web analytics); Term (time); Measure (data warehouse)","score_opus":0.0043071356968834035,"score_gpt":0.17786942663307967,"score_spread":0.17356229093619627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7030355464","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007786644,0.0007714407,0.0000019051085,0.0001785238,0.00026471014,0.00030480415,0.00010442449,0.000061343184,0.99753416],"genre_scores_gemma":[0.004391591,0.0008654286,0.0019418198,0.00018601882,0.00041383473,0.000015531969,0.00048844446,0.00013888846,0.99155843],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988416,0.00003809213,0.00035519793,0.0002347554,0.00017995028,0.00035040773],"domain_scores_gemma":[0.99889636,0.000009059473,0.00040715755,0.00049313006,0.00009265465,0.000101611324],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000108971275,0.00033086294,0.0003072825,0.000050741095,0.00003649644,0.000028768412,0.0003066582,0.0009467616,0.0920111],"category_scores_gemma":[0.0000277037,0.00028717148,0.00010669772,0.000007432719,0.00018186793,1.263006e-8,0.00014641407,0.00019931217,0.002730916],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012823507,0.00004430135,0.000012415314,0.00013353821,0.00010064861,0.000003370392,0.000009531723,0.000010206429,0.00021011278,0.000012763417,0.9973809,0.0019539827],"study_design_scores_gemma":[0.0004523531,0.00024441743,0.000015833304,0.00009702504,0.000056879027,0.00006469727,0.000025589348,6.078867e-7,0.0016164341,0.0000014034167,0.99706346,0.00036130977],"about_ca_topic_score_codex":0.00021976992,"about_ca_topic_score_gemma":0.0012338719,"teacher_disagreement_score":0.08928018,"about_ca_system_score_codex":0.000010277079,"about_ca_system_score_gemma":0.00002955934,"threshold_uncertainty_score":0.99995804},"labels":[],"label_agreement":null},{"id":"W7034086258","doi":"","title":"Smog in New York door bosbranden: 'Lastig om goed adem te halen'","year":2023,"lang":"nl","type":"other","venue":"Bulletin of Miscellaneous Information (Royal Gardens Kew)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Context (archaeology); Ridiculous; Thunder","score_opus":0.007090202216519202,"score_gpt":0.1848834091721638,"score_spread":0.1777932069556446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7034086258","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0047961227,0.0024809379,0.0000012330886,0.00090334495,0.0013710456,0.0008042638,0.00032081135,0.00012697035,0.9891953],"genre_scores_gemma":[0.01951981,0.003606873,0.000558398,0.00038040956,0.0007331009,0.000019587893,0.00041783942,0.00024658313,0.9745174],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99678427,0.00014124316,0.0013131027,0.00063582987,0.00036999723,0.0007555628],"domain_scores_gemma":[0.99795693,0.00006628239,0.0008070477,0.00077686086,0.00013889997,0.00025397376],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00036952723,0.00073102384,0.0008216704,0.00016087093,0.00008234596,0.000087666456,0.00077178143,0.0024873079,0.13155933],"category_scores_gemma":[0.00027431163,0.0007520997,0.00033940986,0.000035717767,0.0003020297,5.6801884e-8,0.0003688333,0.0005956107,0.022589438],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043185177,0.00008286281,0.000032923814,0.0003138675,0.00017153048,0.000029823192,0.000063380605,0.00011760376,0.00052866293,0.000016463473,0.9880727,0.010138311],"study_design_scores_gemma":[0.0018951282,0.00061728933,0.000101751335,0.0004107481,0.000089074914,0.000072063565,0.00015153085,0.000017849718,0.0031298187,0.000011629107,0.9927358,0.00076733186],"about_ca_topic_score_codex":0.004547282,"about_ca_topic_score_gemma":0.009319538,"teacher_disagreement_score":0.10896988,"about_ca_system_score_codex":0.00006634451,"about_ca_system_score_gemma":0.00024412655,"threshold_uncertainty_score":0.999493},"labels":[],"label_agreement":null},{"id":"W7037399519","doi":"","title":"-$0.21 EPS Expected for Ideal Power Inc. (IPWR) This Quarter","year":2017,"lang":"en","type":"other","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Ideal (ethics); Power (physics); Quarter (Canadian coin); Measure (data warehouse)","score_opus":0.007596866269109778,"score_gpt":0.24480259397859871,"score_spread":0.23720572770948894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7037399519","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0020996192,0.0029232395,0.0015703227,0.0007509346,0.0024805055,0.0012116957,0.0007116242,0.00019751895,0.9880545],"genre_scores_gemma":[0.01205428,0.00069588196,0.0048910584,0.0003901125,0.0014023045,0.00011145185,0.0012041893,0.00041170485,0.97883904],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99863535,0.000022515298,0.0002043296,0.0006557521,0.000089744324,0.00039228986],"domain_scores_gemma":[0.99850273,0.000004568043,0.00025346514,0.0010867631,0.00007066212,0.000081835584],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000076824814,0.00036904713,0.00036812824,0.00010475429,0.00008169072,0.000056179604,0.00055931904,0.0018030753,0.0021362016],"category_scores_gemma":[0.000042887106,0.00031367523,0.00016991915,0.000023214652,0.0001562122,8.839302e-7,0.00021250386,0.00013347434,0.000106877196],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044939727,0.000032385746,0.000012211512,0.000018769595,0.00013564916,0.0000018405719,0.000004285364,9.390457e-9,0.20674892,0.000108514745,0.7904932,0.002399299],"study_design_scores_gemma":[0.0006027016,0.00048178833,0.000031370422,0.000026232854,0.00003195261,0.0000083017885,0.000009984747,0.0000013683997,0.047613073,0.0000405466,0.9507251,0.00042758317],"about_ca_topic_score_codex":0.00012754253,"about_ca_topic_score_gemma":0.00048355077,"teacher_disagreement_score":0.16023192,"about_ca_system_score_codex":0.000008834474,"about_ca_system_score_gemma":0.00008834727,"threshold_uncertainty_score":0.9999315},"labels":[],"label_agreement":null},{"id":"W7038860181","doi":"","title":"Interactions between energy transducer TonB and ferric hydroxamate transport proteins from «Escherichia coli»","year":2010,"lang":"en","type":"other","venue":"Library and Archives Canada (Government of Canada)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Periplasmic space; Permease; Ferric; Escherichia coli; Bacterial outer membrane; Membrane transport protein; Cytoplasm; Membrane protein; Membrane","score_opus":0.0023455503875139017,"score_gpt":0.1433441878231747,"score_spread":0.1409986374356608,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7038860181","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.42180744,0.001613254,0.00037541712,0.0039577964,0.00079455995,0.00050535233,0.005956722,0.00003330994,0.5649561],"genre_scores_gemma":[0.804973,0.0011121052,0.0015796078,0.00044928008,0.00045490483,0.000022299195,0.0004263135,0.00015412194,0.19082838],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99872386,0.000030453788,0.00022599628,0.00038756774,0.0004034909,0.00022862853],"domain_scores_gemma":[0.9993842,0.000015287913,0.00015937959,0.00026167207,6.6014496e-7,0.00017875615],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0000055510995,0.0002742319,0.00031303987,0.000027085782,0.00006320835,0.000012634255,0.00020683475,0.00023490921,0.00013497891],"category_scores_gemma":[0.0000010831588,0.00026562304,0.000036043864,0.00003620857,0.000121813304,0.000006019724,0.00008930125,0.00020630937,2.414687e-9],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013926777,0.000023133913,0.002325061,0.00006698407,0.0002715642,0.000015214905,0.000010134218,5.074932e-7,0.9833505,0.0008440046,0.0055230106,0.007430616],"study_design_scores_gemma":[0.00019722497,0.00006525338,0.004430522,0.000042999272,0.000041677395,0.0000018726482,0.00004026431,0.0000076144847,0.34651887,0.00006998225,0.6483581,0.00022560784],"about_ca_topic_score_codex":0.014143993,"about_ca_topic_score_gemma":0.24774629,"teacher_disagreement_score":0.6428351,"about_ca_system_score_codex":0.000001673481,"about_ca_system_score_gemma":0.0005697316,"threshold_uncertainty_score":0.9999796},"labels":[],"label_agreement":null},{"id":"W7042161537","doi":"","title":"Paul Walde, Requiem for a Glacier. Montreal Museum of Fine Arts (March 10, 2021–February 27, 2022)","year":2021,"lang":"en","type":"article","venue":"Érudit (Université de Montréal)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Fine art; Exhibition; Photography; Painting; Feature (linguistics)","score_opus":0.005260819736913431,"score_gpt":0.17804389219505798,"score_spread":0.17278307245814456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7042161537","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96393347,0.018661492,0.00087218726,0.014489001,0.00036616885,0.00034294743,0.0004975245,0.000024505465,0.0008126947],"genre_scores_gemma":[0.91086066,0.016756164,0.007899737,0.00033328973,0.0007919686,0.000032912743,0.0022050184,0.00009942786,0.06102084],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99873215,0.00004249569,0.0002110123,0.0004917529,0.00012245908,0.0004001207],"domain_scores_gemma":[0.9989509,0.00002235944,0.00013595227,0.00056195725,0.00021106191,0.00011778305],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011662164,0.00020390349,0.00028475083,0.00007685418,0.00014155134,0.000008926185,0.00027676666,0.00042513237,0.00017279224],"category_scores_gemma":[0.000058705966,0.00022550744,0.00021567033,0.00020529065,0.00009560828,0.0000047838735,0.0004754642,0.000104455205,0.000012578524],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004688885,0.00011371687,0.00010671115,0.000035774647,0.00015330123,0.00020385286,0.00001934168,0.00001663084,0.8612785,0.00033806497,0.118209824,0.019055407],"study_design_scores_gemma":[0.0012871695,0.00050139794,0.00082984916,0.000014901879,0.00007612052,0.0001253371,0.00009618833,0.000099547055,0.39179695,0.0003271011,0.6046122,0.00023326284],"about_ca_topic_score_codex":0.0005194949,"about_ca_topic_score_gemma":0.023549631,"teacher_disagreement_score":0.48640233,"about_ca_system_score_codex":0.00021173485,"about_ca_system_score_gemma":0.00011457529,"threshold_uncertainty_score":0.99426806},"labels":[],"label_agreement":null},{"id":"W7043212913","doi":"","title":"Royal Bank of Canada Trims General Electric (GE) Target Price to $13.00","year":2018,"lang":"en","type":"other","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Government (linguistics); Work (physics); Order (exchange)","score_opus":0.003130701616309726,"score_gpt":0.1916761701998469,"score_spread":0.18854546858353716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7043212913","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.049566932,0.0015566546,0.0010054332,0.00033215483,0.0013811336,0.0006474543,0.0002072848,0.000052155825,0.9452508],"genre_scores_gemma":[0.018252715,0.00019559929,0.0043914956,0.00053502235,0.0015316994,0.000018199673,0.00020779175,0.00023867485,0.9746288],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99857104,0.000032557342,0.0002695851,0.00052666257,0.00015375119,0.00044638483],"domain_scores_gemma":[0.9990548,0.0000028895413,0.00016097505,0.0005679681,0.000078925936,0.00013447882],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007546639,0.00031030356,0.00036009826,0.00012262433,0.000026294685,0.000010256834,0.00045856534,0.00083334313,0.0026835138],"category_scores_gemma":[0.000033517284,0.0002732753,0.00008129362,0.0001677172,0.00005011667,2.5654126e-7,0.00020129938,0.00009538882,0.000026751663],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029364783,0.00002166642,0.000031024356,0.000016236922,0.0000805493,0.0000017140396,8.2895207e-7,0.0000021977255,0.3214631,0.000029971427,0.67797273,0.0003505811],"study_design_scores_gemma":[0.00017071082,0.00036086282,0.00008926231,0.0000075514126,0.000011353871,0.0000031032764,0.0000014043521,0.000008581389,0.30355075,0.000007151867,0.6955395,0.00024977064],"about_ca_topic_score_codex":0.089743055,"about_ca_topic_score_gemma":0.14204621,"teacher_disagreement_score":0.052303154,"about_ca_system_score_codex":0.000029551196,"about_ca_system_score_gemma":0.00091056904,"threshold_uncertainty_score":0.9999719},"labels":[],"label_agreement":null},{"id":"W7066508417","doi":"","title":"HEALING OF BUCCAL DEHISCENCE DEFECTS AT IMPLANTS INSTALLED IMMEDIATELY INTO&#13;\\nEXTRACTION SOCKETS – AN EXPERIMENTALSTUDY IN DOGS","year":2013,"lang":"en","type":"article","venue":"Research Padua  Archive (University of Padua)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Buccal administration; Dehiscence; Implant; Coronal plane; Osseointegration; Dental alveolus; Alveolar crest","score_opus":0.030306819014766288,"score_gpt":0.3012010697587463,"score_spread":0.27089425074398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7066508417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99835336,0.00015563898,0.0005161075,0.00023483355,0.00006192443,0.00043003308,0.00003496021,0.000008436696,0.00020472254],"genre_scores_gemma":[0.9965549,0.0007193099,0.0024974889,0.000008696579,0.000035740133,0.000003846909,0.00012539864,0.000013452275,0.000041163352],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99825555,0.00036936125,0.00019168544,0.0004463909,0.00029997298,0.00043706672],"domain_scores_gemma":[0.99912184,0.000075530625,0.00011994447,0.00036056346,0.00016295818,0.00015914117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043650754,0.00014020041,0.0002429938,0.00028607418,0.00017619328,0.000011489065,0.0004214948,0.00021886807,0.000071088456],"category_scores_gemma":[0.000089188274,0.00015820138,0.00007820234,0.00020078385,0.00060873013,0.000022945502,0.0006894079,0.00025752743,0.00001846863],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003930811,0.00028554376,0.010288801,0.000045941444,0.00002976774,0.00001321715,0.00119784,0.000008873901,0.98376554,0.00002513682,0.00017956897,0.0037667055],"study_design_scores_gemma":[0.0017464095,0.0022407905,0.19082665,0.00007102049,0.000009757421,0.000018723089,0.005402655,0.00078934367,0.7970694,0.000819466,0.00072057755,0.0002852026],"about_ca_topic_score_codex":0.005362669,"about_ca_topic_score_gemma":0.0075605917,"teacher_disagreement_score":0.18669613,"about_ca_system_score_codex":0.000064003594,"about_ca_system_score_gemma":0.00012707221,"threshold_uncertainty_score":0.8106787},"labels":[],"label_agreement":null},{"id":"W7066742605","doi":"","title":"InfraGuide: a network of best-practice solutions","year":2005,"lang":"en","type":"article","venue":"NPARC","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Government (linguistics); Sustainability; Sustainable development; Work (physics); Urban infrastructure; Critical infrastructure","score_opus":0.012012180095013095,"score_gpt":0.2543552907501256,"score_spread":0.2423431106551125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7066742605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9183708,0.0017982504,0.0029240667,0.0077599324,0.00043200285,0.00023625209,0.00003250261,0.000030451516,0.06841574],"genre_scores_gemma":[0.9673881,0.0006512726,0.03023617,0.00045606997,0.0006697514,0.0000079746715,0.000024152301,0.000011416391,0.0005550891],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99932337,0.000030475854,0.00018286081,0.00017059666,0.00006524306,0.00022748439],"domain_scores_gemma":[0.9994478,0.000010289683,0.00008333887,0.0002995169,0.00011835281,0.000040652794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014674982,0.00008260515,0.00009775976,0.000015383814,0.000052188134,0.000007195544,0.00015890648,0.00021023961,0.000098073004],"category_scores_gemma":[0.00014133063,0.00008074218,0.00005297877,0.000089363995,0.0000932244,0.000002411363,0.00015123854,0.00007495014,0.000027107644],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038016493,0.00008987682,0.00005577,0.0000031137324,0.00003300372,5.527351e-7,0.0000074750615,0.00015334933,0.96090555,0.0026282251,0.014686367,0.021398682],"study_design_scores_gemma":[0.0002218296,0.00031012678,0.00011575681,0.000005941134,0.000024159071,0.000021607802,0.000018366847,0.00007747199,0.24873027,0.00062953075,0.7497435,0.000101382706],"about_ca_topic_score_codex":0.000006242443,"about_ca_topic_score_gemma":0.000023295175,"teacher_disagreement_score":0.7350572,"about_ca_system_score_codex":0.000006953573,"about_ca_system_score_gemma":0.000058062105,"threshold_uncertainty_score":0.32925704},"labels":[],"label_agreement":null},{"id":"W7066991317","doi":"","title":"Investigation of the Immunogenicity and Specificity of the Transferrin Binding Proteins from Bovine Pathogenic Bacteria","year":2019,"lang":"","type":"dissertation","venue":"TSpace","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Ministère de l’Éducation, Gouvernement de l’Ontario","keywords":"Transferrin; Immunogenicity; Mutant; Iron-binding proteins; Transferrin receptor; Transporter; Pathogenic bacteria; Plasma protein binding; Major facilitator superfamily","score_opus":0.0130595364677087,"score_gpt":0.23765235924092978,"score_spread":0.2245928227732211,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7066991317","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947838,0.001749083,0.000030480876,0.00034425154,0.001082759,0.0013865422,0.0005525643,0.000004761749,0.00006575202],"genre_scores_gemma":[0.99682426,0.0015173957,0.00024365241,0.000023198267,0.00012090622,0.000018517052,0.00050038664,0.000045158704,0.0007064948],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99780315,0.00030922625,0.00070277945,0.00064702827,0.00024598304,0.00029185248],"domain_scores_gemma":[0.9976725,0.000023050481,0.00088132947,0.0011767078,0.00019334268,0.000053057967],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025121844,0.0004391205,0.00055825256,0.0000543823,0.00015456881,0.000029001243,0.0007871231,0.0012478549,0.00007046419],"category_scores_gemma":[0.00008529258,0.0003029238,0.00035391262,0.0002750868,0.0005133718,0.000004418248,0.00032493984,0.00042470198,0.0000019101624],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043465177,0.00003775788,0.003957198,0.00020508099,0.00019867226,1.3941724e-7,0.0010364722,0.0000018151165,0.9930291,0.000044951375,0.0000065723034,0.0010475703],"study_design_scores_gemma":[0.0005817897,0.00037339333,0.10591657,0.00026484783,0.00021413913,0.0000029810988,0.00076421496,0.000018549068,0.8910117,0.000054304885,0.00052176794,0.00027574072],"about_ca_topic_score_codex":0.0007266984,"about_ca_topic_score_gemma":0.0005812544,"teacher_disagreement_score":0.10201742,"about_ca_system_score_codex":0.000028242664,"about_ca_system_score_gemma":0.00037422075,"threshold_uncertainty_score":0.9999423},"labels":[],"label_agreement":null},{"id":"W7071179083","doi":"","title":"Revealing the deadly secrets of bacteria","year":2006,"lang":"en","type":"other","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"","score_opus":0.005355024371079709,"score_gpt":0.2126100122547707,"score_spread":0.20725498788369098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7071179083","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03685118,0.003836697,0.00074240513,0.00046451978,0.0010391796,0.0005911319,0.0002806542,0.00008090586,0.95611334],"genre_scores_gemma":[0.06526966,0.0009755015,0.0034164023,0.00023778561,0.001358479,0.000015665777,0.00066428684,0.00035931822,0.9277029],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992658,0.0000317743,0.00019492299,0.000265785,0.000067538254,0.0001741929],"domain_scores_gemma":[0.9992173,0.0000031007328,0.00018648655,0.00054577785,0.000026585858,0.00002075836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000075727614,0.00018613039,0.00019984874,0.000046676916,0.0000190191,0.000010326468,0.00032807098,0.00072875316,0.0003005424],"category_scores_gemma":[0.000011443361,0.00012229831,0.000093008006,0.000052961168,0.00013465362,1.8319511e-7,0.00015840579,0.00008746537,0.000009640372],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007463956,0.00001196376,0.000023430512,0.000021040498,0.000046171637,4.837909e-7,8.388704e-7,2.550328e-7,0.6116789,0.00013500355,0.3871438,0.00093066477],"study_design_scores_gemma":[0.00010588542,0.00007425105,0.00009876262,0.00002136647,0.000019010075,0.0000049062387,0.000003526216,6.838634e-7,0.2256484,0.000020083047,0.7738738,0.0001293428],"about_ca_topic_score_codex":0.0002779778,"about_ca_topic_score_gemma":0.0006477396,"teacher_disagreement_score":0.38673,"about_ca_system_score_codex":0.0000028142292,"about_ca_system_score_gemma":0.00004136022,"threshold_uncertainty_score":0.56208116},"labels":[],"label_agreement":null},{"id":"W7071441414","doi":"","title":"Small Heat Shock Proteins Produced by Pseudomonas Aeruginosa Clonal Variants Isolated from Diverse Niches","year":2009,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Gene; clone (Java method); Pseudomonas aeruginosa; Heat shock protein; Homology (biology); Hypervariable region; Genome","score_opus":0.011345763000942796,"score_gpt":0.209642142454076,"score_spread":0.19829637945313322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7071441414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99532354,0.00040713078,0.000963413,0.0020090581,0.0002130348,0.0004493029,0.0001390195,0.000070075126,0.00042540018],"genre_scores_gemma":[0.9943969,0.00021191781,0.0027877728,0.0009088299,0.00032307266,0.000015145737,0.00051469577,0.00002074701,0.0008209041],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984356,0.000051061223,0.00026903857,0.0007221478,0.000109110275,0.00041304383],"domain_scores_gemma":[0.99917966,0.000004860675,0.00005867247,0.00055505586,0.000079397556,0.00012236573],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008368093,0.00028198105,0.00022975948,0.000038388207,0.0001000189,0.000047617614,0.0003650839,0.0005506677,0.00012908429],"category_scores_gemma":[0.00003884725,0.00024647184,0.00009539212,0.000111240486,0.00007851329,0.0000035727305,0.00016705763,0.00016320957,0.00003639103],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017707549,0.0002034999,0.0004332743,0.0000025135432,0.000062264815,0.000005422382,0.00001139162,0.0000025302518,0.9916261,0.000055200948,0.0039291396,0.0034916103],"study_design_scores_gemma":[0.00082742114,0.0010170245,0.003091954,0.0000075871662,0.00002751238,0.000010858515,0.000017643579,0.000078822624,0.9777506,0.00017626956,0.016628629,0.00036569076],"about_ca_topic_score_codex":0.00019753238,"about_ca_topic_score_gemma":0.000076587254,"teacher_disagreement_score":0.013875489,"about_ca_system_score_codex":0.000014193033,"about_ca_system_score_gemma":0.000068084446,"threshold_uncertainty_score":0.99999875},"labels":[],"label_agreement":null},{"id":"W7074053905","doi":"","title":"Correction: Diversity of blaCTX-M-1-carrying plasmids recovered from Escherichia coli isolated from Canadian domestic animals","year":2024,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Escherichia coli; Plasmid; Enterobacteriaceae; Diversity (politics); Bacteria; Serotype","score_opus":0.07614599550827182,"score_gpt":0.41852357781039207,"score_spread":0.34237758230212023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7074053905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9827885,0.011845962,0.0002088121,0.00012618667,0.0028817612,0.0002559426,0.0010855779,0.000023516051,0.0007837224],"genre_scores_gemma":[0.9919487,0.0069036055,0.00024478848,0.00011373828,0.00031866052,0.0000070211067,0.0002379375,0.000040769217,0.00018473114],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981083,0.000143225,0.0005758063,0.00058352173,0.00023602754,0.00035306418],"domain_scores_gemma":[0.9986154,0.000109793415,0.00034748964,0.00044410262,0.00020940296,0.00027382045],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00031091901,0.00029417584,0.0005521263,0.00036766843,0.00022738433,0.00044209897,0.0014785979,0.00048986543,0.0033709903],"category_scores_gemma":[0.00020377796,0.00029563592,0.00018781362,0.0005987692,0.00016593156,0.00005219252,0.0012391473,0.0003589531,0.000012220608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031855277,0.00004615769,0.050488915,0.000022206574,0.00047762846,0.000038040376,0.0000614576,0.000050845196,0.9309545,0.000005195788,0.013783854,0.0037526544],"study_design_scores_gemma":[0.0005917906,0.00010962777,0.23365861,0.00040815288,0.00025713936,0.000011256799,0.00008358611,0.00066100026,0.7190297,0.0014336762,0.043144196,0.0006112244],"about_ca_topic_score_codex":0.109229505,"about_ca_topic_score_gemma":0.01616738,"teacher_disagreement_score":0.21192475,"about_ca_system_score_codex":0.00009757276,"about_ca_system_score_gemma":0.00046333103,"threshold_uncertainty_score":0.9999496},"labels":[],"label_agreement":null},{"id":"W7083423832","doi":"10.15468/dl.q9f6s8","title":"Occurrence Download","year":2025,"lang":"en","type":"dataset","venue":"Global Biodiversity Information Facility","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Download; Matching (statistics); Range (aeronautics); Identification (biology)","score_opus":0.0069430623938413006,"score_gpt":0.20933868835610547,"score_spread":0.20239562596226418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083423832","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0023055624,0.00006536153,0.0000068217973,0.00017061218,0.0007047347,0.00023025599,0.9964029,0.000024424728,0.00008932919],"genre_scores_gemma":[0.000054415075,0.00042328387,0.000003148135,0.0006123778,0.0000033710949,0.0000039748475,0.99889874,9.987598e-9,6.7924293e-7],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99897623,0.000039302296,0.00028902304,0.000282245,0.00016061192,0.0002525629],"domain_scores_gemma":[0.99890125,0.0000027590647,0.0001806189,0.0006409535,0.00019571873,0.00007869162],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011652685,0.00025599918,0.00020868993,0.0000619706,0.00014342378,0.00007121468,0.0005591011,0.00093068863,0.00020786423],"category_scores_gemma":[0.00011119755,0.0002643698,0.00013650987,0.00017270051,0.00017139287,0.000010458507,0.0006700371,0.00018422738,0.004287008],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007496172,0.000028020253,0.00016280767,0.00008165155,0.000050547125,5.7106297e-7,0.0000016774214,0.000002089751,0.00004522611,7.1807044e-8,0.9981082,0.0014441876],"study_design_scores_gemma":[0.00028730865,0.00010008108,0.00002594916,0.0000020136472,0.000040987914,0.000003421499,0.000016811164,2.25832e-8,0.0007518454,4.3868081e-7,0.99851865,0.00025244552],"about_ca_topic_score_codex":0.00011549662,"about_ca_topic_score_gemma":0.000021053385,"teacher_disagreement_score":0.004079144,"about_ca_system_score_codex":0.000057476438,"about_ca_system_score_gemma":0.00021396519,"threshold_uncertainty_score":0.99998087},"labels":[],"label_agreement":null},{"id":"W7083627457","doi":"10.1016/j.powtec.2025.121663","title":"Design and optimize a novel hydrocyclone by combining mechanistic and data-driven models","year":2025,"lang":"en","type":"article","venue":"Powder Technology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Research Council; Rio Tinto","keywords":"Hydrocyclone; Laminar flow; Conical surface; Inlet; Spiral (railway); Separation (statistics); Reduction (mathematics); Vortex; Flow (mathematics); Ligand cone angle","score_opus":0.01894924746468016,"score_gpt":0.25076663976030444,"score_spread":0.23181739229562429,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083627457","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3589877,0.0056410558,0.6296527,0.004579922,0.00017285335,0.0004956041,0.00009650416,0.00014900141,0.00022466875],"genre_scores_gemma":[0.94932574,0.0016484247,0.048343185,0.0003287506,0.00001546221,0.00003416103,0.00012864555,0.00002129922,0.00015431076],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871564,0.000023834462,0.00020668686,0.0007036457,0.00004828173,0.00030193408],"domain_scores_gemma":[0.99912065,0.000017550481,0.0000669348,0.00071283366,0.000038289523,0.000043745924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013274925,0.00020340114,0.00025059047,0.00015659624,0.00010995681,0.000032511663,0.00046842828,0.00066109013,0.0000028919874],"category_scores_gemma":[0.000059536127,0.00020376111,0.0000143820225,0.00017051636,0.00031859436,0.000005416104,0.0012646507,0.00017704419,0.0000010624328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049230526,0.000056172037,0.0000281389,0.0000141564,0.00008716765,0.0000018957467,0.0000053433823,0.00007588175,0.9883093,0.006005398,0.0010689069,0.0042984113],"study_design_scores_gemma":[0.003214591,0.0008182027,0.000022853257,0.00005538747,0.00017087792,0.00017960982,0.000120051394,0.093791865,0.8483955,0.024764862,0.02775988,0.00070630544],"about_ca_topic_score_codex":0.000012716714,"about_ca_topic_score_gemma":0.000005973006,"teacher_disagreement_score":0.59033805,"about_ca_system_score_codex":0.000007457389,"about_ca_system_score_gemma":0.000043077605,"threshold_uncertainty_score":0.83091366},"labels":[],"label_agreement":null},{"id":"W7083851709","doi":"","title":"Canada to announce marijuana legalization date soon","year":2018,"lang":"en","type":"other","venue":"Internet Archive (Internet Archive)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Government (linguistics); Cannabis; Legalization; Prime minister; Recreational use; Legislation","score_opus":0.0069504714665701165,"score_gpt":0.21740295402073526,"score_spread":0.21045248255416513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083851709","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007513433,0.00035250097,0.021248676,0.0007142092,0.0031028006,0.0011773487,0.0033458893,0.00015088549,0.96239424],"genre_scores_gemma":[0.018043809,0.00020660726,0.0028835598,0.0013429102,0.0017309184,0.00005755741,0.0044941115,0.0004754354,0.9707651],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971491,0.00015335578,0.00047673116,0.0012487854,0.00028673297,0.000685265],"domain_scores_gemma":[0.9983503,0.000014057045,0.00031027562,0.0009760401,0.00006403771,0.00028527735],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010062347,0.00066934456,0.0004971972,0.0002933791,0.000030440104,0.00009241854,0.0013008736,0.00041146862,0.0027363307],"category_scores_gemma":[0.000075951066,0.0006550311,0.0001633849,0.00011127638,0.0002953606,0.0000031058398,0.0013566766,0.00028709942,0.00061662437],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022291973,0.000046032488,0.00016136495,0.00005040102,0.00026968177,0.00002959946,0.00005165223,0.0000024578674,0.05939234,0.00041491564,0.9388441,0.0005145574],"study_design_scores_gemma":[0.0003334153,0.00071014697,0.0002520795,0.0002561697,0.000042951437,0.000034882934,0.00000916935,0.00011313485,0.03462027,0.000075262826,0.96283674,0.00071577413],"about_ca_topic_score_codex":0.57208276,"about_ca_topic_score_gemma":0.9519222,"teacher_disagreement_score":0.37983945,"about_ca_system_score_codex":0.00003720981,"about_ca_system_score_gemma":0.00047231186,"threshold_uncertainty_score":0.9995901},"labels":[],"label_agreement":null},{"id":"W7083857083","doi":"","title":"Sports Update: LeBron AP Athlete of the Year, NHL All Star captains announced, Nationals sign Sanchez","year":2018,"lang":"en","type":"other","venue":"Internet Archive (Internet Archive)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Legalization; Supreme court; Cannabis; Sign (mathematics); Appeal; Recreational use; Legislation; Tort; Recreation","score_opus":0.007887792179828377,"score_gpt":0.2251827425212837,"score_spread":0.21729495034145532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083857083","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.21608064,0.0018398172,0.0057985205,0.0008150076,0.004613523,0.0028136834,0.00671543,0.00022631379,0.7610971],"genre_scores_gemma":[0.2231647,0.00079869136,0.0028456359,0.0005428412,0.0013303737,0.00005099357,0.0022817596,0.00041938323,0.7685656],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99714243,0.00022394456,0.00062960095,0.0010120233,0.00041622986,0.0005757905],"domain_scores_gemma":[0.9979307,0.000029158447,0.000694669,0.0011195985,0.000089458335,0.00013638173],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020597706,0.00063095003,0.00056653493,0.0002563346,0.000026493035,0.00004317166,0.0015599619,0.00058271736,0.003017205],"category_scores_gemma":[0.000076124816,0.00050082075,0.00043558952,0.00008970362,0.0012107576,0.000003874826,0.0013767313,0.0004141193,0.00026331854],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002187938,0.00010593937,0.00043410758,0.00006816608,0.0004440396,0.00000951521,0.00013782614,0.0000018663611,0.16899073,0.0008950022,0.8284286,0.000265396],"study_design_scores_gemma":[0.00053639285,0.00049347396,0.00082614773,0.0003316098,0.000076357515,0.000028745466,0.000019797044,0.00004279894,0.0814349,0.00071363855,0.91498744,0.0005087087],"about_ca_topic_score_codex":0.001125082,"about_ca_topic_score_gemma":0.0055373097,"teacher_disagreement_score":0.087555826,"about_ca_system_score_codex":0.00002530629,"about_ca_system_score_gemma":0.00017011228,"threshold_uncertainty_score":0.99974436},"labels":[],"label_agreement":null},{"id":"W7083870285","doi":"","title":"Board of Water & Sewerage Commission - March 10, 2025","year":2025,"lang":"en","type":"other","venue":"Internet Archive (Internet Archive)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Sewerage; Commission; Water supply; Memphis; Quarter (Canadian coin); Distribution (mathematics); Water industry","score_opus":0.007029380746647326,"score_gpt":0.23404842742370047,"score_spread":0.22701904667705314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083870285","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0055757584,0.0007128869,0.0074131903,0.00029957498,0.0012109431,0.0008004888,0.0015161587,0.00010855354,0.98236245],"genre_scores_gemma":[0.035905533,0.00066156685,0.0020781986,0.00015061874,0.0005314734,0.000043931384,0.002708676,0.00029637475,0.9576236],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970744,0.00025688042,0.00067971455,0.0010815633,0.00024554975,0.00066189445],"domain_scores_gemma":[0.9983334,0.000039297698,0.00029382715,0.0011011441,0.00006481045,0.00016751172],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00013582077,0.00070023356,0.00077374914,0.0005390372,0.000023661214,0.00004690616,0.0014132244,0.0007180416,0.010433409],"category_scores_gemma":[0.00005276101,0.0005588547,0.00046083357,0.00006942802,0.0005595744,0.000002428984,0.0023391936,0.00054141524,0.00046061425],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042033312,0.0001234444,0.00009767927,0.0001854126,0.00040659195,0.000017766324,0.000069562884,8.8348645e-7,0.29954344,0.00029938537,0.69827497,0.00056050543],"study_design_scores_gemma":[0.0005961161,0.00065990567,0.00007916331,0.00051999954,0.00006808991,0.000012321845,0.000009824605,0.00006229779,0.22968191,0.00037339903,0.7674877,0.00044924635],"about_ca_topic_score_codex":0.0037464318,"about_ca_topic_score_gemma":0.003378331,"teacher_disagreement_score":0.06986154,"about_ca_system_score_codex":0.000015568763,"about_ca_system_score_gemma":0.00012152704,"threshold_uncertainty_score":0.9996863},"labels":[],"label_agreement":null},{"id":"W7083882918","doi":"","title":"Eurozone growth slows to its lowest level in 4 years - NO CAPTION","year":2018,"lang":"en","type":"other","venue":"Internet Archive (Internet Archive)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Quarter (Canadian coin); Protectionism; Agency (philosophy); Economic integration; World trade","score_opus":0.013253545201264628,"score_gpt":0.23278688311266654,"score_spread":0.21953333791140192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083882918","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1637905,0.00044296178,0.00661525,0.00030054591,0.00373439,0.001984853,0.0025047157,0.000216343,0.82041043],"genre_scores_gemma":[0.083757915,0.0004735435,0.0035630476,0.0004985947,0.0018488148,0.00008731154,0.0015106219,0.0005356097,0.90772456],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969781,0.00019374958,0.00055508607,0.0013147921,0.00022942135,0.0007288393],"domain_scores_gemma":[0.998684,0.000022547227,0.00026216058,0.0007168031,0.000066570625,0.00024795617],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00015574059,0.00065856054,0.000571337,0.0006678969,0.000014140635,0.00007050112,0.0012099396,0.0005911721,0.002594773],"category_scores_gemma":[0.0001393472,0.00068319467,0.00023599797,0.00013304077,0.0003059694,0.0000040044692,0.0013571036,0.0004411051,0.0060871504],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036287875,0.00012673366,0.00026836875,0.000057546295,0.00014586361,0.00005859778,0.00014376322,0.0000010216309,0.20691343,0.00021448184,0.7913403,0.0003670494],"study_design_scores_gemma":[0.0007850823,0.0014872827,0.0023755631,0.00046509915,0.00002914069,0.00004494132,0.000008646802,0.00007901421,0.028039427,0.00012304688,0.9657858,0.0007769468],"about_ca_topic_score_codex":0.004285816,"about_ca_topic_score_gemma":0.03137306,"teacher_disagreement_score":0.178874,"about_ca_system_score_codex":0.00003083023,"about_ca_system_score_gemma":0.000085435044,"threshold_uncertainty_score":0.9995619},"labels":[],"label_agreement":null},{"id":"W7083896195","doi":"","title":"Virgin joins BA in criticizing long wait times at Heathrow NO CAPTION","year":2018,"lang":"en","type":"other","venue":"Internet Archive (Internet Archive)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Government (linguistics); Joins; European union; Public access; Control (management)","score_opus":0.008284052363710753,"score_gpt":0.23242998475662252,"score_spread":0.22414593239291178,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083896195","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.10776121,0.0011012962,0.0037093249,0.00019382157,0.0024348942,0.0014477719,0.0008449378,0.0002050508,0.8823017],"genre_scores_gemma":[0.084139176,0.00088922627,0.0020256815,0.0003085702,0.0018345487,0.000108717526,0.0022395765,0.0005332957,0.9079212],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966057,0.00025280385,0.0006491063,0.0013976208,0.00023392022,0.00086085463],"domain_scores_gemma":[0.9985492,0.000038531198,0.00030303455,0.0008602065,0.00004735116,0.00020164573],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016557577,0.000786324,0.0006930559,0.00054939656,0.000034304172,0.00008208214,0.0009842438,0.0007456413,0.007264761],"category_scores_gemma":[0.000082509956,0.00077956496,0.00033485825,0.00008489435,0.000742395,0.0000054189827,0.0016471817,0.00049300806,0.0028682058],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004302825,0.00016826417,0.00086141715,0.000108263,0.00022953018,0.00007764512,0.00013272482,0.0000011337073,0.19045462,0.0002844816,0.80679876,0.00045288232],"study_design_scores_gemma":[0.00089255936,0.0012842502,0.0009704625,0.0007854256,0.000052483705,0.00010757088,0.00001729571,0.0003970338,0.06299789,0.00021764831,0.9314202,0.0008571632],"about_ca_topic_score_codex":0.004692719,"about_ca_topic_score_gemma":0.076055154,"teacher_disagreement_score":0.12745672,"about_ca_system_score_codex":0.00006646804,"about_ca_system_score_gemma":0.000083877894,"threshold_uncertainty_score":0.9994655},"labels":[],"label_agreement":null},{"id":"W7084030826","doi":"10.64628/aam.gaaaytagq","title":"Canada’s new food policy means everyone’s at the table","year":2019,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Table (database); Food supply; Food policy; Food security; Food processing","score_opus":0.004975499186124898,"score_gpt":0.19180852341117807,"score_spread":0.18683302422505318,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084030826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9712282,0.0006750205,0.00008644656,0.009412401,0.00041924638,0.00023943423,0.00005591976,0.000013743356,0.01786961],"genre_scores_gemma":[0.8693591,0.000105375446,0.0001064622,0.0027392183,0.00033099117,0.0000029249084,0.00005015512,0.000014684151,0.12729114],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992479,0.000015889842,0.000114900424,0.00025071233,0.00009195898,0.00027864877],"domain_scores_gemma":[0.9993615,0.000004451907,0.000038835336,0.0004939665,0.000030003397,0.000071245784],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000045557426,0.00011803387,0.00009574933,0.000016356076,0.00006266774,0.0000160219,0.00027872183,0.00016888298,0.00035587657],"category_scores_gemma":[0.000021512946,0.000078306155,0.000038741677,0.00008597614,0.00003467944,8.524549e-7,0.00028612782,0.00006187272,0.000049524395],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002284213,0.000007403535,0.0005909469,0.0000028009615,0.000039352606,2.987613e-7,0.000003770719,0.000020012354,0.8139873,0.0008361731,0.18359818,0.00089088286],"study_design_scores_gemma":[0.00017942369,0.00014641207,0.00087319437,9.20853e-7,0.0000037144664,0.000008740505,0.000010920158,0.000004346667,0.38247266,0.000036235626,0.61617744,0.000085969616],"about_ca_topic_score_codex":0.30527526,"about_ca_topic_score_gemma":0.8161313,"teacher_disagreement_score":0.51085603,"about_ca_system_score_codex":0.000048599286,"about_ca_system_score_gemma":0.0014292796,"threshold_uncertainty_score":0.69935095},"labels":[],"label_agreement":null},{"id":"W7084033960","doi":"10.19217/nul2023-08-04","title":"Die Weltnaturkonferenz CBD COP 15 und der Globale Biodiversitätsrahmen von Kunming-Montreal - ein Meilenstein internationaler Umweltpolitik","year":2024,"lang":"de","type":"article","venue":"Open MIND","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Umwelt; Context (archaeology); Ecological modernization; Ecosystem diversity","score_opus":0.01791672829346003,"score_gpt":0.28634997700484777,"score_spread":0.26843324871138774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084033960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8868622,0.061121378,0.00010220105,0.0045900038,0.005287315,0.0010052817,0.0036601296,0.00001651283,0.037354976],"genre_scores_gemma":[0.97508454,0.0035580366,0.0014559305,0.00027489866,0.0014184264,0.000026796492,0.002148615,0.00005685493,0.015975924],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99718267,0.000111441994,0.0004995005,0.0012498709,0.00026360687,0.00069293624],"domain_scores_gemma":[0.9987558,0.000028467392,0.00015062821,0.0006670693,0.00016839153,0.00022960946],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002701594,0.0005171094,0.0004259316,0.0001522006,0.00017771723,0.0008567069,0.0012710202,0.0010990292,0.002980862],"category_scores_gemma":[0.0000487664,0.000503833,0.0002235077,0.00019230759,0.00032874665,0.000028035163,0.0017921035,0.00039418787,0.0023184274],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008750075,0.0007040936,0.00068962865,0.0001756415,0.0054745856,0.0007398014,0.0005382425,0.000024591513,0.3486527,0.0010220323,0.070334695,0.570769],"study_design_scores_gemma":[0.0008288046,0.00043624436,0.00042515493,0.00014615334,0.00042519215,0.000021674812,0.00011262587,0.00022812797,0.20880222,0.000170733,0.78786665,0.0005364067],"about_ca_topic_score_codex":0.000505187,"about_ca_topic_score_gemma":0.0010686719,"teacher_disagreement_score":0.717532,"about_ca_system_score_codex":0.00014011035,"about_ca_system_score_gemma":0.0004684824,"threshold_uncertainty_score":0.9997413},"labels":[],"label_agreement":null},{"id":"W7084033973","doi":"10.6084/m9.figshare.30247249","title":"Evolution of late Palaeozoic shearing in the Cobequid Highlands: constraints on the fragmentation of the Appalachian orogen in Nova Scotia along intra-continental shear zones","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Nova scotia; Paleozoic; Shearing (physics); Shear zone; Shear (geology)","score_opus":0.011379401117983882,"score_gpt":0.2338706962033111,"score_spread":0.22249129508532722,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084033973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961289,0.00020019907,0.0000033138801,0.0005965478,0.00008612123,0.00034462064,0.0022587625,0.0000027074962,0.0003788193],"genre_scores_gemma":[0.9984812,0.000008845429,0.000020570547,0.00012992325,0.000028943105,0.000018171431,0.0012983147,0.000005150164,0.000008895501],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993073,0.000091375194,0.00023248102,0.0001585172,0.00007935674,0.00013100952],"domain_scores_gemma":[0.9995807,0.00003072547,0.00009793436,0.00025281176,0.000030368996,0.0000074791824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012923476,0.00009180591,0.00010451228,0.000050539747,0.00002946189,0.000010518272,0.0002938092,0.00015569213,0.0005013825],"category_scores_gemma":[0.0001468438,0.00005368284,0.00005179818,0.00021038749,0.0000637509,0.000002040536,0.00011241613,0.00012944281,0.0000055694004],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012305495,0.00015716402,0.039161608,0.0001414695,0.000053246476,0.0000019056024,0.00024748655,0.00024571558,0.9533648,0.001014994,0.0025091541,0.002979417],"study_design_scores_gemma":[0.0007648768,0.00016123343,0.59266233,0.00089064596,0.000012701452,0.0000047420863,0.00044913118,0.00021651296,0.4035816,0.00011225701,0.0010231574,0.00012082791],"about_ca_topic_score_codex":0.00015570197,"about_ca_topic_score_gemma":0.0012456854,"teacher_disagreement_score":0.5535007,"about_ca_system_score_codex":0.00001647887,"about_ca_system_score_gemma":0.00006105253,"threshold_uncertainty_score":0.5489787},"labels":[],"label_agreement":null},{"id":"W7084034598","doi":"10.64628/aam.7kwtsnq34","title":"Cooling the rhetoric on Canada’s environmental assessment efforts","year":2019,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Victoria; York University","funders":"","keywords":"Rhetoric; Environmental impact assessment; Environmental justice; Sustainability; Work (physics)","score_opus":0.0033923679349327053,"score_gpt":0.19719029885802206,"score_spread":0.19379793092308936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084034598","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930772,0.000059482336,0.000028655488,0.00052249175,0.0005024177,0.00015625377,0.000010869623,0.000005102056,0.00563753],"genre_scores_gemma":[0.99644715,0.000075462856,0.00008867326,0.0008680218,0.00011697504,0.0000056697622,0.000051309125,0.000010009279,0.0023367032],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99941534,0.000015847807,0.00009386238,0.00020657932,0.00010103754,0.00016733103],"domain_scores_gemma":[0.99960434,0.0000052623386,0.000033085216,0.00032231823,0.0000047063227,0.00003029711],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000060168724,0.00009503453,0.00006828256,0.00000901121,0.00005232937,0.000011372397,0.00015813448,0.00010123282,0.00015187303],"category_scores_gemma":[0.000002541102,0.00006121768,0.000030132365,0.000019384526,0.000025317422,4.3861235e-7,0.000097976685,0.000078288445,0.000019065381],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023173543,0.000026771577,0.0032320707,0.0000020244765,0.000027053497,0.0000013035814,0.000001963482,0.000050953062,0.99103034,0.00061978184,0.0029572386,0.0020273197],"study_design_scores_gemma":[0.0002641483,0.00034457285,0.023113875,0.0000024976598,0.000006407846,0.000009324759,0.00003499045,0.000092852955,0.42329443,0.000011964249,0.55266815,0.00015675547],"about_ca_topic_score_codex":0.0041118427,"about_ca_topic_score_gemma":0.01997274,"teacher_disagreement_score":0.5677359,"about_ca_system_score_codex":0.000037089016,"about_ca_system_score_gemma":0.00012602819,"threshold_uncertainty_score":0.9979102},"labels":[],"label_agreement":null},{"id":"W7084037747","doi":"10.64000/wneqg-4cg54","title":"Ten more days 'til Toronto","year":2018,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Work (physics); Government (linguistics); Period (music); Agency (philosophy)","score_opus":0.006432321502996954,"score_gpt":0.24011959007885514,"score_spread":0.2336872685758582,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084037747","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9592491,0.000416418,0.00055917545,0.00063570915,0.00040960932,0.00009799263,0.000010371673,0.00003793056,0.038583696],"genre_scores_gemma":[0.99122363,0.00017325344,0.0022805866,0.00082376035,0.0008353073,0.000006230537,0.00004079478,0.000014830434,0.004601586],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993729,0.000009907907,0.00010491266,0.0002590682,0.000051296127,0.00020192242],"domain_scores_gemma":[0.9994892,0.000001166314,0.000025958789,0.0003654674,0.000066362096,0.000051872903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000051684772,0.00010166732,0.00007819121,0.000009088592,0.000051966723,0.000015281546,0.00019645627,0.00024124404,0.0003331922],"category_scores_gemma":[0.00001702417,0.00008228396,0.000040644678,0.00002889093,0.00015146678,0.0000012781852,0.00016024185,0.000029294795,0.0000562846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025447516,0.000021666754,0.00037613802,0.0000013514839,0.000015182629,5.537369e-7,0.000012243259,6.827745e-8,0.9781716,0.00036362433,0.0090492405,0.011962876],"study_design_scores_gemma":[0.00014511825,0.00035465445,0.001842915,0.000001130482,0.0000042614915,0.0000073909873,0.000040576797,0.00000938482,0.5877844,0.000041485295,0.4096669,0.000101747064],"about_ca_topic_score_codex":0.00010172,"about_ca_topic_score_gemma":0.0006188912,"teacher_disagreement_score":0.40061766,"about_ca_system_score_codex":0.0000084669,"about_ca_system_score_gemma":0.000024604455,"threshold_uncertainty_score":0.3648221},"labels":[],"label_agreement":null},{"id":"W7084040247","doi":"10.64628/aam.gdwhdre6g","title":"Promoting social inclusion through pet companionship","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University; University of Saskatchewan","funders":"","keywords":"Interpersonal relationship; Inclusion (mineral); Interpersonal communication; Social relation; Social isolation; Qualitative research","score_opus":0.012660320947838687,"score_gpt":0.2759744298156702,"score_spread":0.2633141088678315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084040247","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98378474,0.00011499186,0.0012435139,0.004127306,0.00022562584,0.00013069218,0.0000058023707,0.000035724723,0.01033158],"genre_scores_gemma":[0.9962262,0.000038540733,0.0014482465,0.0008934021,0.00016186447,0.0000072460302,0.000064656415,0.000007432151,0.001152396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936134,0.000033916578,0.00013968842,0.00023708862,0.000051578165,0.0001764048],"domain_scores_gemma":[0.9997384,0.000003817877,0.000034726585,0.00016396662,0.000044306817,0.000014796847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009946828,0.000097022246,0.000098729295,0.000024397556,0.00034427963,0.000017688604,0.00019688359,0.00016226732,0.000026820828],"category_scores_gemma":[0.000029326799,0.00008576095,0.00005145855,0.00011008106,0.00007267808,0.0000010691606,0.0010560332,0.000081105325,0.00000626768],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023532992,0.000046203262,0.00047173083,0.000012374854,0.000020331865,0.0000010725005,0.00007628826,2.5463038e-7,0.98576206,0.005553592,0.0032989816,0.0047335643],"study_design_scores_gemma":[0.00037766,0.000106423446,0.0021434466,0.000008737423,0.000011123973,0.0000072994926,0.000062731924,0.000039848583,0.801557,0.0035589864,0.19198473,0.0001419892],"about_ca_topic_score_codex":0.00002375721,"about_ca_topic_score_gemma":0.000056313973,"teacher_disagreement_score":0.18868575,"about_ca_system_score_codex":0.000008152482,"about_ca_system_score_gemma":0.000046728637,"threshold_uncertainty_score":0.349723},"labels":[],"label_agreement":null},{"id":"W7084047996","doi":"10.64628/aam.t5swhyrev","title":"Music engagement and achievement predicts higher grades in math, science and English","year":2019,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Student engagement; Academic achievement; Perception; Higher education; Statistical analysis","score_opus":0.010585403068915042,"score_gpt":0.21187157051415315,"score_spread":0.2012861674452381,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084047996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978102,0.00023184883,0.000004761574,0.0002563772,0.00023711403,0.00020285232,0.0000030545525,0.000010018368,0.0012437843],"genre_scores_gemma":[0.9984567,0.0002788227,0.00049424195,0.00029477573,0.00006149914,0.000008323893,0.000005476355,0.000006001837,0.00039415766],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925965,0.000015738937,0.000102342296,0.00033721133,0.000095215335,0.00018987042],"domain_scores_gemma":[0.9996937,0.0000033165388,0.000023066968,0.00018723017,0.000046598547,0.00004611627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003056289,0.000088928115,0.00008047733,0.00005867535,0.000037803464,0.000036906942,0.00011361945,0.00010274381,0.00002021983],"category_scores_gemma":[0.00002369633,0.00007299893,0.0000083229315,0.000090178786,0.00018174379,0.000003357696,0.0003646456,0.00006423457,0.0000021052097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013251397,0.000032119737,0.011116192,0.000010680705,0.0000058707633,6.034331e-7,0.00006301899,5.4043977e-7,0.98330843,0.0029128175,0.000101575926,0.0024349021],"study_design_scores_gemma":[0.0012192648,0.0008447934,0.2473874,0.000016323183,0.000008752773,0.0000041430285,0.00020428967,0.000054662738,0.58114517,0.0001977685,0.16864008,0.00027738814],"about_ca_topic_score_codex":0.000012826524,"about_ca_topic_score_gemma":0.000024435756,"teacher_disagreement_score":0.4021633,"about_ca_system_score_codex":0.000008752501,"about_ca_system_score_gemma":0.000033232896,"threshold_uncertainty_score":0.297681},"labels":[],"label_agreement":null},{"id":"W7084051139","doi":"10.6084/m9.figshare.30147130.v1","title":"Supplementary figures and tables from Ancient DNA of the Toronto Subway Deer Adds to the Extinction List of Ice Age Megafauna","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Megafauna; Extinction (optical mineralogy); Ice age; Ancient DNA; Table (database)","score_opus":0.008989819053159457,"score_gpt":0.2316343150562611,"score_spread":0.22264449600310163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084051139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8326497,0.0023581346,0.0000047085196,0.00061483437,0.00016249712,0.00030079766,0.16343226,0.000003557842,0.00047349004],"genre_scores_gemma":[0.9799186,0.000055149456,0.000072584866,0.00046981918,0.00008141584,0.000038935905,0.019088253,0.0000058911596,0.00026933828],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994731,0.000029722984,0.00014302292,0.00017994667,0.00006551,0.000108707405],"domain_scores_gemma":[0.99950653,0.000017784028,0.00006592804,0.00033208163,0.00005848711,0.000019198087],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000039161874,0.00008411782,0.000093065,0.000010558082,0.00005363675,0.000012496731,0.00025223967,0.000117148,0.008850846],"category_scores_gemma":[0.0001405143,0.000053122094,0.000044412856,0.00006349551,0.00002225239,0.0000016016353,0.00036732908,0.000038643033,0.0000013517895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031767016,0.00002014043,0.00017315788,0.00003329596,0.00003322813,2.0831772e-7,0.000038484766,0.00000503581,0.8504293,0.00000963695,0.14714323,0.002082497],"study_design_scores_gemma":[0.000092158494,0.000053714724,0.008587564,0.000069465066,0.000010317452,2.5340768e-7,0.000059210983,0.000004741919,0.5401245,0.000008842804,0.4509516,0.00003763449],"about_ca_topic_score_codex":0.00052976893,"about_ca_topic_score_gemma":0.0093487585,"teacher_disagreement_score":0.31030482,"about_ca_system_score_codex":0.000010244924,"about_ca_system_score_gemma":0.000033475022,"threshold_uncertainty_score":0.9920552},"labels":[],"label_agreement":null},{"id":"W7084065740","doi":"10.64628/aam.g6mygghru","title":"Understanding the backlash against corporate DEI — and how to move forward","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University; University of British Columbia","funders":"","keywords":"Backlash; Context (archaeology); Government (linguistics); Corporate governance; Term (time)","score_opus":0.031159965564963168,"score_gpt":0.2316439030158847,"score_spread":0.20048393745092152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084065740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9349567,0.0002096821,0.040665895,0.0165954,0.00028096262,0.00027720843,0.00001258129,0.000020064885,0.0069814497],"genre_scores_gemma":[0.9924032,0.00025773037,0.0008069407,0.0026447978,0.00005686323,0.000009147895,0.000014784777,0.000007831463,0.0037986848],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943984,0.000021163352,0.00007515445,0.00024698715,0.00003987557,0.00017697168],"domain_scores_gemma":[0.9996285,0.000008450097,0.00003757821,0.0002520993,0.000030567888,0.00004280156],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010657213,0.00010560646,0.000089458015,0.000038377628,0.0000987427,0.00006655506,0.00015534992,0.0001680919,0.0000045325637],"category_scores_gemma":[0.000037737755,0.000071848954,0.00003142202,0.0001230159,0.00009583104,0.0000010736574,0.0002598541,0.00005967876,0.0000031469126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036499616,0.000008780073,0.00074838614,0.0000070160613,0.000050916125,8.6955475e-7,0.000009983862,0.000009360817,0.97375107,0.007968147,0.012991335,0.004417621],"study_design_scores_gemma":[0.0005723104,0.00024428993,0.0028426663,0.000017291024,0.000027012433,0.00000521876,0.0005900232,0.00015651148,0.8061714,0.0045465487,0.18454689,0.0002798046],"about_ca_topic_score_codex":0.000002414944,"about_ca_topic_score_gemma":0.00006233852,"teacher_disagreement_score":0.17155556,"about_ca_system_score_codex":0.000013215378,"about_ca_system_score_gemma":0.000033761273,"threshold_uncertainty_score":0.29299152},"labels":[],"label_agreement":null},{"id":"W7084069120","doi":"10.64628/aam.xe6utmvam","title":"Raising children under suspicion and criminalization","year":2019,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Raising (metalworking); Criminalization; Punitive damages; Punishment (psychology); Work (physics); Legislation","score_opus":0.009021686331744118,"score_gpt":0.23146457353208566,"score_spread":0.22244288720034155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084069120","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99660903,0.00018390852,0.0018789254,0.00021597448,0.000084384985,0.000098044366,0.0000013133807,0.000010893452,0.0009175251],"genre_scores_gemma":[0.99841726,0.00014125096,0.00035367586,0.0002890018,0.00006702718,0.0000010000358,0.0000610941,0.000008178454,0.0006615145],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996171,0.000010380099,0.00006766201,0.00017937688,0.00003041521,0.00009508768],"domain_scores_gemma":[0.99980056,0.0000012833971,0.000021462865,0.00013590576,0.000020079884,0.000020718808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000038825878,0.00006247663,0.00005358488,0.000020904103,0.000022763908,0.00001652517,0.000047557034,0.00014163947,0.000049907576],"category_scores_gemma":[0.0000048628176,0.0000542337,0.00001527571,0.000027306449,0.000027307387,0.0000010951494,0.00007214531,0.00002638655,0.000012057889],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012673586,0.00000833198,0.011460036,0.0000029591563,0.0000100838215,5.397273e-8,0.00000354227,0.000007077432,0.9842565,0.0011054524,0.00011306647,0.003020204],"study_design_scores_gemma":[0.00048157322,0.00033391526,0.12150782,0.0000052155738,0.0000119605365,0.00002811634,0.000028629176,0.000040058465,0.87038994,0.00046038858,0.006532833,0.00017953794],"about_ca_topic_score_codex":0.000013143208,"about_ca_topic_score_gemma":0.000008820209,"teacher_disagreement_score":0.11386657,"about_ca_system_score_codex":0.0000022928132,"about_ca_system_score_gemma":0.000009131538,"threshold_uncertainty_score":0.22115861},"labels":[],"label_agreement":null},{"id":"W7084070019","doi":"10.6084/m9.figshare.30252474","title":"Risky Family Environment, Rumination, Drinking to Cope, and Problematic Alcohol Use: A Cross-National Examination Among College Students","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Rumination; Psychological intervention; Path analysis (statistics); Causal model; Human factors and ergonomics; Test (biology); Suicide prevention; Injury prevention","score_opus":0.020808170468874405,"score_gpt":0.28608893635206933,"score_spread":0.26528076588319494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084070019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9857322,0.000106622894,0.00003773942,0.00008906025,0.000048494585,0.0006623835,0.012814294,0.000017633176,0.000491556],"genre_scores_gemma":[0.984107,0.000022995302,0.00036408976,0.00024382633,0.000044117387,0.00027180076,0.013333723,0.0000132232635,0.0015991915],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990568,0.000037387974,0.00020469118,0.00035339894,0.00018240881,0.00016528266],"domain_scores_gemma":[0.9995397,0.000018538163,0.00008271509,0.00017748825,0.00013551123,0.000046082176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010824434,0.00013541414,0.000108340064,0.00009803518,0.00011864917,0.00012422747,0.00021159888,0.00022411405,0.00051762327],"category_scores_gemma":[0.00036159463,0.00014127485,0.000026678854,0.00013103863,0.000024807621,0.00001012381,0.00041043918,0.00006730436,0.000048895276],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000783606,0.00035389687,0.077991374,0.0003820422,0.00027023052,0.000008751505,0.00011812163,0.0003456684,0.78496665,0.00034694362,0.12821326,0.0069246995],"study_design_scores_gemma":[0.000567881,0.00010329241,0.9008851,0.0002484779,0.000010361209,0.0000022265958,0.000017243488,0.00010449021,0.03879801,0.00008485476,0.058995895,0.00018214161],"about_ca_topic_score_codex":0.000003134128,"about_ca_topic_score_gemma":0.0000135740665,"teacher_disagreement_score":0.82289374,"about_ca_system_score_codex":0.000033002438,"about_ca_system_score_gemma":0.000042270625,"threshold_uncertainty_score":0.57610214},"labels":[],"label_agreement":null},{"id":"W7084071933","doi":"10.6084/m9.figshare.30118675","title":"Additional file 5 of Support preferences among women with and without postpartum depression and anxiety disorder","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Postpartum depression; Anxiety; Depression (economics); Postpartum period; Anxiety disorder; Panic disorder","score_opus":0.004965360060598426,"score_gpt":0.20254016188065377,"score_spread":0.19757480182005535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084071933","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.27167425,0.00006675689,2.9427912e-7,0.000012640666,0.000004483313,0.0000704697,0.7274962,0.0000049557816,0.00066992984],"genre_scores_gemma":[0.5403308,0.000030545172,0.00017015962,0.000039751292,0.000017455119,0.00024304501,0.4585691,0.000005096191,0.00059402967],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99958026,0.0000091920965,0.000071559174,0.00019719482,0.00003788662,0.00010391665],"domain_scores_gemma":[0.99974793,0.000015193615,0.000049422677,0.000107830114,0.000048566682,0.000031059968],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000008302454,0.00007868312,0.00008399053,0.000021334397,0.000033806704,0.00001241397,0.00006229407,0.0001387865,0.43507794],"category_scores_gemma":[0.00011864431,0.00006019087,0.000008941465,0.00004033053,0.000041589534,0.000002604272,0.00014877305,0.000043659962,0.0000032126884],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071892,0.00001950713,0.005032203,0.00006580653,0.000029513847,2.3358336e-7,0.00001033365,2.5162691e-7,0.005735754,6.348888e-7,0.98219347,0.006840377],"study_design_scores_gemma":[0.00021379328,0.00027975408,0.20694187,0.00037171124,0.0000043909636,0.0000057210573,0.000041522504,0.00000933585,0.01323724,0.000019743457,0.77876884,0.000106098654],"about_ca_topic_score_codex":0.0000018549031,"about_ca_topic_score_gemma":0.000031950036,"teacher_disagreement_score":0.43507472,"about_ca_system_score_codex":0.0000018362667,"about_ca_system_score_gemma":0.00005212663,"threshold_uncertainty_score":0.5654385},"labels":[],"label_agreement":null},{"id":"W7084073539","doi":"10.6084/m9.figshare.30109765","title":"Additional file 1 of Small nucleolar RNA dysregulation and potential roles in bovine subclinical mastitis","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Agriculture and Agri-Food Canada","funders":"","keywords":"RNA; Mastitis; Genome; Whole genome sequencing; Sequence (biology); Small nucleolar RNA; Table (database); Ribosomal RNA","score_opus":0.009244104812489159,"score_gpt":0.2209874310907439,"score_spread":0.21174332627825473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084073539","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009761131,0.00013993755,1.2720021e-7,0.000036263682,0.00004447404,0.00012342072,0.99952227,0.000004278494,0.000031592925],"genre_scores_gemma":[0.000051401843,0.00007308759,0.00022559582,0.0000660264,0.00025650926,0.00012543611,0.9989561,0.000007538026,0.00023835023],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99910617,0.000034491877,0.0002820312,0.00035555844,0.0000732734,0.0001484537],"domain_scores_gemma":[0.9993551,0.000069065325,0.00017364249,0.0002874792,0.00007883817,0.000035896683],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000189563,0.00017000051,0.00022425954,0.000091860355,0.00002342963,0.000016638334,0.00021686843,0.00090167206,0.77832115],"category_scores_gemma":[0.001149423,0.0001808582,0.00007329944,0.00007113063,0.000031018164,0.000001410138,0.00039688335,0.00018889458,0.00002480993],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004315883,0.000039702863,2.1605561e-7,0.00012553041,0.000023972536,0.000007508882,2.2929899e-7,0.0000018741016,0.00090466905,1.6724472e-7,0.9974006,0.0014523809],"study_design_scores_gemma":[0.00020306208,0.00020680782,0.0006774741,0.0009424935,0.000011876361,0.0000070740202,0.0000014453323,0.000018544917,0.00075501844,0.000008338159,0.9970037,0.00016421356],"about_ca_topic_score_codex":0.0000075065414,"about_ca_topic_score_gemma":0.00030047272,"teacher_disagreement_score":0.77829635,"about_ca_system_score_codex":0.0000065759446,"about_ca_system_score_gemma":0.00014117916,"threshold_uncertainty_score":0.7375183},"labels":[],"label_agreement":null},{"id":"W7084075799","doi":"10.64628/aa.k3utpr56t","title":"If it’s voluntary for developers to make affordable housing deals with councils, what can you expect?","year":2019,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Government (linguistics); Work (physics); Turnover; Agency (philosophy); Quality (philosophy)","score_opus":0.011551293877999216,"score_gpt":0.22160289637722128,"score_spread":0.21005160249922206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084075799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933565,0.00019080595,0.0024373003,0.0023372078,0.00039663853,0.00069143187,0.000031743035,0.00003752374,0.0005208185],"genre_scores_gemma":[0.9720609,0.0003207398,0.019661557,0.0039433944,0.00019501787,0.00006616394,0.00015655572,0.000049686616,0.0035459457],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874085,0.000011946555,0.00018385032,0.00049869076,0.00012279043,0.00044185104],"domain_scores_gemma":[0.9992428,0.000005867534,0.000052643943,0.00041796666,0.00017583877,0.000104923514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014278843,0.00021314314,0.00020795327,0.00004941522,0.00006590706,0.00009820101,0.00024474616,0.00026564547,0.000043874352],"category_scores_gemma":[0.000013610429,0.0001694278,0.00005381532,0.00010838691,0.00004438415,0.000004964375,0.000108543885,0.000058167232,0.000017659258],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031023356,0.000035637935,0.0013439942,0.000026655644,0.000083980936,0.0000019272297,0.00015167343,0.0000745437,0.98321164,0.00007216108,0.005026667,0.009660887],"study_design_scores_gemma":[0.0006586579,0.0009786598,0.00029451525,0.000029876848,0.000017389217,0.00001341731,0.0014436073,0.000032059244,0.56515014,0.000013620449,0.43101877,0.00034931168],"about_ca_topic_score_codex":0.000117222306,"about_ca_topic_score_gemma":0.0021060102,"teacher_disagreement_score":0.4259921,"about_ca_system_score_codex":0.000045033627,"about_ca_system_score_gemma":0.00022606003,"threshold_uncertainty_score":0.6909065},"labels":[],"label_agreement":null},{"id":"W7084080683","doi":"10.1016/b978-0-443-26745-1.00008-6","title":"Robotic manipulation of human sperm","year":2025,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Intracytoplasmic sperm injection; Sperm; Standardization; Robotic surgery; Human reproduction; Sperm cell; In vitro fertilisation","score_opus":0.013567950210378522,"score_gpt":0.24213550366746017,"score_spread":0.22856755345708166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084080683","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0037035004,0.0009061247,0.00001470994,0.000036335507,0.0003299514,0.00031316682,0.000028048207,0.000014719088,0.99465346],"genre_scores_gemma":[0.05799549,0.00018322736,0.00026245855,0.00008142439,0.0002946189,0.0000066119615,0.00028018554,0.0000396522,0.94085634],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989613,0.000012334033,0.00037543048,0.00038815342,0.00009985456,0.00016291403],"domain_scores_gemma":[0.9990628,0.0000033639105,0.00022197755,0.0005829885,0.0000925945,0.00003629171],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007188473,0.00026634498,0.0003530601,0.00010464092,0.00004610336,0.000010566884,0.0002595671,0.00086203736,0.000067326364],"category_scores_gemma":[0.000008023386,0.00026798548,0.00018737093,0.00000858177,0.00014280493,4.689338e-7,0.00023120685,0.00017075449,0.000009888068],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019927918,0.000010834723,0.000011074629,0.0001135823,0.00014482177,0.0000031087347,0.0000066281787,0.0000022353631,0.49238503,0.010200456,0.00024052177,0.4968618],"study_design_scores_gemma":[0.00027105783,0.00034867597,0.0000763549,0.00018849042,0.00013793145,0.0000070218307,0.0000017317137,0.0000027501326,0.114971906,0.004503364,0.8791321,0.00035863463],"about_ca_topic_score_codex":6.287902e-7,"about_ca_topic_score_gemma":0.00003183278,"teacher_disagreement_score":0.8788916,"about_ca_system_score_codex":0.0000145266495,"about_ca_system_score_gemma":0.00007265616,"threshold_uncertainty_score":0.99997723},"labels":[],"label_agreement":null},{"id":"W7084087031","doi":"10.1109/infocomwkshps65812.2025.11152750","title":"Connectivity Enrichment for Decentralized Federated Learning Networks with Teleportation","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Memorial University of Newfoundland; Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Stability (learning theory); Teleportation; Identification (biology); Federated learning; Convergence (economics); Service (business); Information privacy; Data sharing","score_opus":0.0049045151110419126,"score_gpt":0.23851471062028143,"score_spread":0.2336101955092395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084087031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7305064,0.00015106905,0.2680616,0.00027553842,0.000115621675,0.00030334754,0.0000014967655,0.00002786746,0.00055705156],"genre_scores_gemma":[0.9952765,0.00014021377,0.0030294578,0.00018212217,0.000038533708,0.00005376695,0.00017087793,0.0000085282945,0.0011000015],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939406,0.00002387426,0.00012036296,0.00024772887,0.00003068177,0.00018329702],"domain_scores_gemma":[0.9997162,0.000011519054,0.000052890166,0.00009911003,0.000096157084,0.000024127668],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009039827,0.00009928414,0.00010518335,0.000025107083,0.00011126097,0.00003265094,0.000053277457,0.00018384946,0.000009690537],"category_scores_gemma":[0.000041111456,0.00007903874,0.000032876807,0.000089269546,0.000032643708,0.0000010060585,0.0000289356,0.000057227735,3.8890568e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057212496,0.0000683565,0.007808742,0.000013222682,0.00014337487,8.017923e-7,0.0000038295902,0.0022765305,0.97007185,0.0010509221,0.00094696187,0.017043304],"study_design_scores_gemma":[0.0021746864,0.0009729719,0.0071551795,0.000013877245,0.000048649494,0.0000061825517,0.000070101625,0.0049380013,0.8631611,0.00010064067,0.12110118,0.00025744288],"about_ca_topic_score_codex":0.000015532527,"about_ca_topic_score_gemma":0.0001590649,"teacher_disagreement_score":0.26503214,"about_ca_system_score_codex":0.000009410784,"about_ca_system_score_gemma":0.00005422904,"threshold_uncertainty_score":0.32231066},"labels":[],"label_agreement":null},{"id":"W7084100230","doi":"10.1109/seai65851.2025.11108853","title":"Symoblic Model Checking for Multi-Agent Systems Based on ATLE","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Novelis (Canada)","funders":"","keywords":"Model checking; Symbolic trajectory evaluation; Binary decision diagram; Temporal logic; Abstraction model checking; Computation tree logic; Robotics; Binary number","score_opus":0.028135260629642223,"score_gpt":0.2825577573412833,"score_spread":0.2544224967116411,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084100230","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.38383403,0.0003801926,0.60966766,0.0007594657,0.0007634625,0.00084117765,0.000055429875,0.000061769344,0.0036368133],"genre_scores_gemma":[0.9852922,0.000031551855,0.007958151,0.0007341331,0.0000701205,0.0000973579,0.000078738354,0.000014518366,0.0057232156],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9992669,0.0000132209925,0.00015514495,0.00031348426,0.000044271233,0.00020696217],"domain_scores_gemma":[0.999533,0.0000059647823,0.00003655997,0.00033019827,0.0000626555,0.000031653028],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010456262,0.00012465853,0.000121189085,0.00006416953,0.000064529275,0.00002887346,0.00016805701,0.0002758213,0.000003983835],"category_scores_gemma":[0.000034366712,0.00010693902,0.00008006411,0.00006404537,0.000030439818,5.732247e-7,0.00006498569,0.00004757296,0.000004282816],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000078195575,0.00011502937,0.00010040873,0.000049817707,0.000033220567,2.4158325e-7,0.0000024064514,0.009033347,0.9836793,0.0029962864,0.0026655833,0.0012461696],"study_design_scores_gemma":[0.000808769,0.00023716803,0.000062917454,0.000020291847,0.000014114342,3.7717052e-7,0.000014949925,0.49187836,0.4707755,0.000030372605,0.03601804,0.0001391352],"about_ca_topic_score_codex":0.000010184677,"about_ca_topic_score_gemma":0.000011462728,"teacher_disagreement_score":0.6017095,"about_ca_system_score_codex":0.00001513445,"about_ca_system_score_gemma":0.00007580611,"threshold_uncertainty_score":0.43608466},"labels":[],"label_agreement":null},{"id":"W7084101788","doi":"10.6084/m9.figshare.30215613","title":"Additional file 3 of 2025 position statement on active outdoor play: process and methodology","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Lakehead University; University of Ottawa; Children's Hospital of Eastern Ontario; Queen's University","funders":"","keywords":"Process (computing); Statement (logic); Listing (finance); Position (finance); Conceptual design; Conceptual model; Steering committee","score_opus":0.0341237940221849,"score_gpt":0.31688805007289317,"score_spread":0.28276425605070826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084101788","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00000828514,0.000054397453,2.7690345e-7,0.000057060144,0.00005024838,0.00023846701,0.9994997,0.000005129792,0.00008643183],"genre_scores_gemma":[0.0000042430547,0.000040952695,0.00024403087,0.00024850128,0.00013748016,0.0007264566,0.9982525,0.000007240187,0.00033856777],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99903107,0.00007473948,0.00021624127,0.00042157687,0.00009301128,0.00016333896],"domain_scores_gemma":[0.9990584,0.0002073109,0.00026107463,0.00028730923,0.0001485389,0.000037348],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000022526443,0.0002117288,0.00025052912,0.000096562544,0.000041359657,0.000011515925,0.00021236477,0.0007352452,0.8179701],"category_scores_gemma":[0.0013736424,0.00020312126,0.00006077936,0.0000671887,0.000027107786,0.0000014694488,0.00024463478,0.00019309005,0.00004257764],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001065792,0.000052554522,7.379663e-9,0.0002597407,0.0000958608,0.0000030817864,0.0000015570257,9.892766e-7,0.00078864483,3.7364035e-7,0.99727654,0.0014140366],"study_design_scores_gemma":[0.0001489841,0.00053236634,0.000023849308,0.0009700712,0.000020618452,0.000005080325,0.000009667344,0.0000010552147,0.02243475,0.00001964501,0.975659,0.00017492291],"about_ca_topic_score_codex":0.0000043746923,"about_ca_topic_score_gemma":0.000024559273,"teacher_disagreement_score":0.81792754,"about_ca_system_score_codex":0.000015876833,"about_ca_system_score_gemma":0.00027632297,"threshold_uncertainty_score":0.82830447},"labels":[],"label_agreement":null},{"id":"W7084110568","doi":"10.6084/m9.figshare.30016069","title":"Additional file 2 of Trajectories of childhood eating behaviors and their association with internalizing and externalizing symptoms in adolescence","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Université du Québec à Chicoutimi; Université Laval; Université de Montréal; Concordia University; Centre Hospitalier Universitaire Sainte-Justine; McGill University; Douglas Mental Health University Institute","funders":"","keywords":"Association (psychology); Adverse Childhood Experiences; Poison control; Human factors and ergonomics","score_opus":0.004328262046041391,"score_gpt":0.2013314666683218,"score_spread":0.1970032046222804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084110568","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4595595,0.00018445333,0.0000010626387,0.000005520649,0.000006257404,0.00005213662,0.5401222,0.0000024882713,0.00006637645],"genre_scores_gemma":[0.91073614,0.000010184032,0.00020337415,0.000016031121,0.000019217918,0.00004586376,0.0889183,0.0000046386563,0.00004626694],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996377,0.000013067385,0.00011633964,0.00012563849,0.000034529057,0.00007270305],"domain_scores_gemma":[0.99971265,0.000051208157,0.000118559234,0.00006052472,0.00004661445,0.000010475841],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000015745394,0.000065258675,0.00009567228,0.000039670176,0.000015641597,0.00000805844,0.00005566842,0.00010830071,0.026688984],"category_scores_gemma":[0.00029112695,0.00005588688,0.00001527427,0.00006131216,0.000014349891,0.0000027705175,0.00007951622,0.00005488413,2.606001e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011098744,0.00018710973,0.07357746,0.00053337554,0.00017957142,0.000002954353,0.00040055334,0.000006936299,0.6853221,0.00001817248,0.20220858,0.03745219],"study_design_scores_gemma":[0.00049730757,0.00033996248,0.56744975,0.008571244,0.000010264762,0.000009433091,0.00019863769,0.000031532945,0.396963,0.000028759569,0.02571294,0.00018713203],"about_ca_topic_score_codex":0.000007330597,"about_ca_topic_score_gemma":0.000041032057,"teacher_disagreement_score":0.4938723,"about_ca_system_score_codex":0.00000698928,"about_ca_system_score_gemma":0.000033687134,"threshold_uncertainty_score":0.9742007},"labels":[],"label_agreement":null},{"id":"W7084111154","doi":"10.12473/cpm.202408018","title":"Research and Application of Drill-String Conveyed Magnetic Ranging Technology in Underground Gas Storage Wells","year":2025,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Petro-Canada","funders":"","keywords":"Wireline; Ranging; Drill string; Cable gland; Electromagnetic shielding; Drill pipe; Drill; Electromagnetic interference","score_opus":0.09314327836921674,"score_gpt":0.510305362265376,"score_spread":0.4171620838961593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084111154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97873944,0.01852622,0.00091860886,0.0005369035,0.00013696823,0.00046705996,0.000011834034,0.000008894315,0.00065405946],"genre_scores_gemma":[0.9858601,0.013580268,0.00022904448,0.00004235773,0.000041861444,0.000036833022,0.000013100028,0.000018983576,0.00017745789],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833626,0.00014251875,0.0005529964,0.0004493565,0.00018522383,0.00033362754],"domain_scores_gemma":[0.9988676,0.00007343225,0.00026097868,0.00048276642,0.00025746704,0.000057783727],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010283472,0.00017180962,0.00041672445,0.0012929336,0.000106421896,0.00015512988,0.0012077464,0.00038840264,0.00009466091],"category_scores_gemma":[0.00014620995,0.00017405424,0.000047562793,0.0012906553,0.0004518225,0.000024558585,0.0013356846,0.0003463499,0.0000011478426],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015177368,0.000098752986,0.08023428,0.00007398961,0.00004623874,0.0000035698438,0.000010053624,0.00002696449,0.90330595,0.00090393756,0.00043119735,0.014713309],"study_design_scores_gemma":[0.0008259908,0.00007298353,0.11679506,0.00018186656,0.000022052618,0.000008601388,0.00015455773,0.00008858103,0.85843754,0.015008697,0.008201885,0.00020216109],"about_ca_topic_score_codex":0.00038654267,"about_ca_topic_score_gemma":0.0001226728,"teacher_disagreement_score":0.044868372,"about_ca_system_score_codex":0.000041612377,"about_ca_system_score_gemma":0.00012515481,"threshold_uncertainty_score":0.7097725},"labels":[],"label_agreement":null},{"id":"W7084123720","doi":"10.64628/aa.4ukqavqg5","title":"After stunning comeback, centre-left Liberals likely to win majority of seats at Canadian election","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Stunning; Government (linguistics); Federal election; General election; Legislature","score_opus":0.0034544174183277015,"score_gpt":0.21856180317242335,"score_spread":0.21510738575409566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084123720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937963,0.00017627445,0.000108038425,0.0017853909,0.00029928234,0.00020330366,0.000034579552,0.000012499747,0.0035843402],"genre_scores_gemma":[0.987997,0.000058688962,0.0007594677,0.0011915467,0.000068542206,0.000006167579,0.000051201547,0.000008800437,0.009858607],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991208,0.000029657123,0.00019033332,0.00030248874,0.000055106993,0.00030161324],"domain_scores_gemma":[0.99945575,0.000004352573,0.000032060863,0.00029063772,0.000092135975,0.00012504323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000082263105,0.00012933012,0.00015148026,0.0000909265,0.000057969013,0.000015822989,0.00014972428,0.00029534491,0.0001723102],"category_scores_gemma":[0.000026144475,0.0001242997,0.000058937527,0.00014890086,0.00004148039,0.0000014454612,0.00016946894,0.00006643789,0.000017368187],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011057865,0.000026569882,0.021147428,0.000016551581,0.000051843068,0.0000022853728,0.000025240653,0.000004492553,0.96930087,0.00009945816,0.006309404,0.0029052745],"study_design_scores_gemma":[0.00020232005,0.00014179727,0.030332146,0.000014005607,0.000013621874,0.0000033874567,0.000016185002,0.0000057568263,0.77294946,0.00003979035,0.19615142,0.00013009782],"about_ca_topic_score_codex":0.0070164856,"about_ca_topic_score_gemma":0.18903811,"teacher_disagreement_score":0.1963514,"about_ca_system_score_codex":0.000056877805,"about_ca_system_score_gemma":0.000114990755,"threshold_uncertainty_score":0.9995959},"labels":[],"label_agreement":null},{"id":"W7084131249","doi":"10.64628/aam.yrsdqquvq","title":"Billionaires and loyalists will provide Trump with muscle during his second term","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Burman University; York University","funders":"","keywords":"Term (time); Government (linguistics)","score_opus":0.0028060031247729455,"score_gpt":0.19391281760141174,"score_spread":0.1911068144766388,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084131249","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970031,0.00040567445,0.00006945363,0.0008252901,0.00007453822,0.0001494243,0.000011041478,0.000024448294,0.0014370708],"genre_scores_gemma":[0.9936263,0.00015823732,0.0006021515,0.00030181842,0.000056716457,0.000014772259,0.000020523965,0.000011202326,0.005208252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993107,0.000012839401,0.000118913544,0.00033540878,0.000039661416,0.00018251901],"domain_scores_gemma":[0.9996402,0.0000031976688,0.00003263841,0.0002515633,0.000032519758,0.000039842387],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000035130244,0.00012828555,0.00010947722,0.00005593481,0.000070071976,0.000031428175,0.000109557375,0.00018447093,0.000046890455],"category_scores_gemma":[0.000010574461,0.00009473748,0.00002499869,0.00007374928,0.00013031389,0.0000027601614,0.00015787182,0.000057131838,0.0000012087529],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000068268324,0.000024087307,0.004312132,0.000046233108,0.000037267146,0.0000033449824,0.000007752292,6.350669e-7,0.98957175,0.00020755516,0.0003770548,0.005343903],"study_design_scores_gemma":[0.0006198385,0.00020554064,0.099114455,0.000017670933,0.000013658733,0.000016887947,0.000018581595,0.0000035116514,0.8265668,0.00008956523,0.07317492,0.00015857219],"about_ca_topic_score_codex":0.00001963366,"about_ca_topic_score_gemma":0.00037316736,"teacher_disagreement_score":0.16300498,"about_ca_system_score_codex":0.000007129342,"about_ca_system_score_gemma":0.000044526685,"threshold_uncertainty_score":0.38632822},"labels":[],"label_agreement":null},{"id":"W7084135441","doi":"10.1016/j.envc.2025.101332","title":"Forest expansion and glacial retreat in the Central Himalaya indicated by past observations and future projections","year":2025,"lang":"en","type":"article","venue":"Environmental Challenges","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Deutscher Akademischer Austauschdienst; Rufford Foundation","keywords":"Land cover; Climate change; Land use; Deforestation (computer science); Precipitation; Land use, land-use change and forestry; Forest cover; Glacial period","score_opus":0.007981736109300835,"score_gpt":0.20133314466300425,"score_spread":0.19335140855370342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084135441","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98742384,0.006178975,0.0000040807704,0.005962203,0.00006789719,0.00017904416,0.00004358362,0.0000050258573,0.00013533111],"genre_scores_gemma":[0.97364575,0.025802195,0.000046982557,0.00014979811,0.00012075547,0.000028372559,0.00015259348,0.0000053939416,0.000048157624],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994733,0.000035058798,0.00008695867,0.00022283252,0.000050019156,0.00013186231],"domain_scores_gemma":[0.99982274,0.0000045627608,0.000023227522,0.00012851122,0.000001921776,0.000019066563],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053356474,0.00009395858,0.00006427087,0.000027531683,0.00008722936,0.000012641494,0.00007370615,0.00019205167,0.0000036311428],"category_scores_gemma":[0.000003629644,0.000072193965,0.000014658157,0.000036751597,0.00012737942,0.0000029146497,0.000090189686,0.00008635225,2.6597942e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005795915,0.00020022629,0.14707927,0.000017671187,0.000030629366,0.0000016507529,0.00035830785,7.943152e-7,0.8328456,0.00031812882,0.0010268528,0.01806288],"study_design_scores_gemma":[0.0003357411,0.00018534828,0.86090815,0.000005855339,0.000011809935,0.000007915713,0.0011846516,0.0000057336133,0.014091573,0.00006887228,0.1231023,0.00009202647],"about_ca_topic_score_codex":0.000011330421,"about_ca_topic_score_gemma":0.00025527677,"teacher_disagreement_score":0.8187541,"about_ca_system_score_codex":0.000013106341,"about_ca_system_score_gemma":0.000007967846,"threshold_uncertainty_score":0.29439846},"labels":[],"label_agreement":null},{"id":"W7084136304","doi":"10.6084/m9.figshare.c.8036345.v1","title":"Screening young children for neurodevelopmental differences in sub-Saharan Africa: a scoping review","year":2025,"lang":"en","type":"other","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"PsycINFO; Scopus; Inclusion (mineral); Limiting; MEDLINE; Quality assessment; Quality (philosophy)","score_opus":0.029649821884472613,"score_gpt":0.26320804393628444,"score_spread":0.23355822205181181,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084136304","genre_codex":"review","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00040166738,0.5542672,0.000058217585,0.00020193831,0.0005024173,0.0077931914,0.4022558,0.00017900199,0.034340546],"genre_scores_gemma":[0.0031975328,0.07681181,0.0019509707,0.0009903183,0.0011121396,0.0027342893,0.8368855,0.0006229407,0.07569448],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99888706,0.000026937498,0.00023172781,0.0005085771,0.000068608315,0.0002770969],"domain_scores_gemma":[0.99952304,0.0000068574095,0.00014781185,0.0002636325,0.00002528793,0.0000333815],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003412249,0.00026175578,0.00035790692,0.00011022597,0.000031790936,0.000024498735,0.00034487157,0.0004957027,0.0047316677],"category_scores_gemma":[0.00019343753,0.00025325027,0.00009920684,0.00011166792,0.000011026595,9.732865e-7,0.00026911355,0.00012572594,0.000027509659],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009277495,0.000018310242,0.00007379646,0.0024994544,0.00005113178,0.0000017072679,0.0000011143252,5.537144e-8,0.0024603542,4.2197186e-7,0.98910177,0.00578261],"study_design_scores_gemma":[0.0008387947,0.00018906132,0.0030579744,0.40681005,0.000051500636,0.00001385971,0.0000015805155,0.000003921622,0.011847336,0.0000037554628,0.57621753,0.00096462114],"about_ca_topic_score_codex":0.000010619903,"about_ca_topic_score_gemma":0.00019465001,"teacher_disagreement_score":0.47745538,"about_ca_system_score_codex":0.00000692727,"about_ca_system_score_gemma":0.00014631214,"threshold_uncertainty_score":0.99999195},"labels":[],"label_agreement":null},{"id":"W7084141541","doi":"10.64628/aap.6yvtfcxxe","title":"‘ Adolescence ’ est une critique poignante de la masculinité toxique chez les jeunes","year":2025,"lang":"fr","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Identity (music); Subject (documents); Gender identity; Qualitative research","score_opus":0.004787367944709681,"score_gpt":0.2556403085146256,"score_spread":0.2508529405699159,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084141541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9212777,0.022267329,0.014450331,0.028457597,0.0011246774,0.00034723085,0.000079416175,0.00007061861,0.011925098],"genre_scores_gemma":[0.95374,0.021248061,0.0050026476,0.001786597,0.0003982032,0.000026486967,0.000049720573,0.000032521053,0.017715745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979947,0.00032361364,0.00038798797,0.00062364206,0.00007461151,0.0005954276],"domain_scores_gemma":[0.99906623,0.00004557755,0.00008072607,0.0005456382,0.0001435752,0.000118230855],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00043205323,0.00035650202,0.00031368202,0.00008584361,0.00014285499,0.00009323607,0.000491222,0.0018238414,0.00009519267],"category_scores_gemma":[0.00017981388,0.0003574717,0.0001976096,0.00029303972,0.000905417,0.0000041459757,0.00036623958,0.00042837433,0.000019776788],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007780292,0.00026411255,0.006359578,0.00022939527,0.00011656258,0.00002905077,0.00003933957,0.000010837725,0.9421887,0.023899782,0.0035037952,0.023281073],"study_design_scores_gemma":[0.00049988396,0.00020095147,0.0066659767,0.00024585673,0.00006481254,0.00006988577,0.0003717115,0.000070794136,0.7310806,0.0019344586,0.25844616,0.0003489009],"about_ca_topic_score_codex":0.0009984338,"about_ca_topic_score_gemma":0.00083558564,"teacher_disagreement_score":0.25494236,"about_ca_system_score_codex":0.00003522864,"about_ca_system_score_gemma":0.00043619977,"threshold_uncertainty_score":0.9998877},"labels":[],"label_agreement":null},{"id":"W7084147903","doi":"10.6084/m9.figshare.30109372.v1","title":"GPC-Mulde event-data repository-Corrected version.xlsx","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Event (particle physics); Arctic; Overprinting; The arctic","score_opus":0.015046835466247663,"score_gpt":0.26205448423188304,"score_spread":0.24700764876563538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084147903","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000044391454,0.001169484,4.221334e-7,0.00008790666,0.0010095442,0.0002921087,0.997179,0.000033571265,0.00018359846],"genre_scores_gemma":[0.000063384294,0.00025243746,0.000041909676,0.00030492985,0.0008912196,0.00006861044,0.99600345,0.000018709603,0.0023553555],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980435,0.00007327082,0.00033690679,0.0010160891,0.00016616954,0.00036405673],"domain_scores_gemma":[0.9966527,0.0000192249,0.00024175376,0.0028315973,0.00016138471,0.000093345385],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000043512522,0.00038954476,0.00032022165,0.00009857625,0.00013076355,0.000079977865,0.0020185672,0.0017009901,0.012002253],"category_scores_gemma":[0.00078012986,0.0003878892,0.00012968403,0.00017330928,0.000021352991,0.0000028761401,0.0029504623,0.00042111432,0.00029494055],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040421954,0.00005203574,6.5354374e-7,0.00017633098,0.00010321655,0.000028875016,4.0169485e-7,0.0000013470598,0.011593545,5.521836e-8,0.9875104,0.0004927312],"study_design_scores_gemma":[0.00026870338,0.00015516678,0.00001745741,0.0005791692,0.00006343811,0.000026731153,0.0000031278141,0.000010940151,0.029652186,9.562926e-7,0.9688193,0.00040278808],"about_ca_topic_score_codex":0.0000476681,"about_ca_topic_score_gemma":0.00009222484,"teacher_disagreement_score":0.01869105,"about_ca_system_score_codex":0.000024947403,"about_ca_system_score_gemma":0.00041317084,"threshold_uncertainty_score":0.9998573},"labels":[],"label_agreement":null},{"id":"W7084149524","doi":"10.1145/3746058.3759018","title":"Tension&amp;Gaze: Gaze-Responsive UI Gated by Finger Tension","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Tension (geology); Work (physics); Deformation (meteorology); Head (geology)","score_opus":0.006883264608809514,"score_gpt":0.24223652369703985,"score_spread":0.23535325908823035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084149524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98857695,0.0013847727,0.0022123398,0.00426083,0.0005816398,0.00026135345,0.000040205716,0.000071062634,0.0026108338],"genre_scores_gemma":[0.957838,0.0007732942,0.0020157902,0.0036931469,0.00011465333,0.000011918033,0.0004140167,0.00002614773,0.03511301],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987347,0.000058792364,0.00025665294,0.00052346947,0.00009015923,0.00033623216],"domain_scores_gemma":[0.99907494,0.000016374774,0.00006321714,0.0005580547,0.00021808043,0.00006934176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012263039,0.00022060874,0.00020798156,0.00009155685,0.00011167216,0.00003329766,0.00023229295,0.000601883,0.00012894615],"category_scores_gemma":[0.00019548899,0.00018113616,0.00009347413,0.00021615217,0.00013719793,0.0000017625233,0.00031650378,0.00014570776,0.00007026153],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014040957,0.000051285217,0.00012228891,0.0000059356053,0.000043009055,0.0000020737557,0.0000033763622,0.0000017942033,0.83306694,0.00010504904,0.16293487,0.003522949],"study_design_scores_gemma":[0.00033134877,0.00011888356,0.0003521929,0.000014015042,0.000015994588,0.0000073450606,0.000015465312,0.000023646191,0.53317654,0.00008815635,0.46570793,0.00014848587],"about_ca_topic_score_codex":0.000045273777,"about_ca_topic_score_gemma":0.000056812303,"teacher_disagreement_score":0.30277306,"about_ca_system_score_codex":0.000013253964,"about_ca_system_score_gemma":0.00009209212,"threshold_uncertainty_score":0.7386518},"labels":[],"label_agreement":null},{"id":"W7084157949","doi":"10.6084/m9.figshare.29972918.v1","title":"An environmental scan of peer support programs in Ontario, Canada for adults with special health care needs and their caregivers","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Peer support; Social support; Inclusion (mineral); Peer group; Peer review; Health care; Support group; Peer-to-peer","score_opus":0.006854170912342074,"score_gpt":0.1943054566774332,"score_spread":0.18745128576509112,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084157949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9636181,0.00015093783,4.777846e-7,0.00012516991,0.000043659667,0.00043992154,0.035433386,0.000002680285,0.00018565089],"genre_scores_gemma":[0.91941506,0.000004325873,0.00007381511,0.00008313211,0.000050867795,0.000025749378,0.08024151,0.0000071409945,0.00009839817],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994829,0.000008550942,0.00010315535,0.00019283252,0.000048382983,0.00016415479],"domain_scores_gemma":[0.99972284,0.0000017486628,0.000048819795,0.00014901889,0.00003327081,0.000044279317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000014203986,0.000101518795,0.00012292073,0.00003235674,0.000030247109,0.000008165534,0.00010640272,0.0001113398,0.0005392257],"category_scores_gemma":[0.000006423833,0.00008626693,0.000018830939,0.000039319148,0.00001870095,0.0000015989528,0.000052546522,0.000055002594,1.4135418e-7],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0040321825,0.0007714985,0.05967319,0.0021832034,0.00048558274,0.000028606675,0.030904504,0.000046453355,0.1291128,0.000059354017,0.39584997,0.37685266],"study_design_scores_gemma":[0.0024036774,0.0036551906,0.041547112,0.0003684462,0.000009451,0.00000804914,0.02119311,0.0000059209283,0.10336392,0.0000040943814,0.82709306,0.00034797515],"about_ca_topic_score_codex":0.16522165,"about_ca_topic_score_gemma":0.978589,"teacher_disagreement_score":0.81336737,"about_ca_system_score_codex":0.00009440407,"about_ca_system_score_gemma":0.0008886233,"threshold_uncertainty_score":0.8403372},"labels":[],"label_agreement":null},{"id":"W7084158696","doi":"10.6084/m9.figshare.29286578.v2","title":"AEON Fine-Scale Acoustic Survey (FSAS) Raw Data","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Ping (video games); Bin; Zoom; Data set; Noise (video); Grid; Echo (communications protocol)","score_opus":0.03674758658572393,"score_gpt":0.2862054742176128,"score_spread":0.24945788763188884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084158696","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006029033,0.0011634632,0.0000019649635,0.000051681403,0.00045291893,0.0002919795,0.9978979,0.00002143646,0.000058317426],"genre_scores_gemma":[0.00015237907,0.000324885,0.00003604704,0.00027305048,0.00061692926,0.000063718,0.9976373,0.000022099504,0.00087363046],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99797153,0.0001043945,0.0003236351,0.001044487,0.00014995145,0.0004059934],"domain_scores_gemma":[0.99633247,0.000041635227,0.00019889187,0.003182387,0.0001563229,0.00008828658],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011788488,0.00040977757,0.00037764164,0.0000902474,0.00008249766,0.00007903715,0.002309583,0.0016183861,0.017013589],"category_scores_gemma":[0.0016600841,0.00040175882,0.00008732529,0.00017968948,0.00002668295,0.0000024240144,0.0034066362,0.00040586983,0.00029785122],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003449665,0.000048723967,0.0000017753044,0.00025393773,0.000069930495,0.000008665536,2.607544e-7,0.0000053336485,0.004638304,1.9688622e-8,0.9942196,0.0007189625],"study_design_scores_gemma":[0.00023066791,0.00012673532,0.00022806028,0.00036374267,0.000049430153,0.000008488102,9.906873e-7,0.000017518221,0.0049977517,0.0000010217013,0.9935415,0.0004341069],"about_ca_topic_score_codex":0.00011314429,"about_ca_topic_score_gemma":0.004302704,"teacher_disagreement_score":0.016715737,"about_ca_system_score_codex":0.000013919572,"about_ca_system_score_gemma":0.00037748192,"threshold_uncertainty_score":0.9998434},"labels":[],"label_agreement":null},{"id":"W7084246582","doi":"","title":"LLM-Based Telemetry Repair and Fault Detection in V2X Networks with Digital Twin Guidance","year":2025,"lang":"en","type":"article","venue":"Edinburgh Napier Research Repository (Edinburgh Napier University)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Excellence Research Chairs, Government of Canada","keywords":"Telemetry; Robustness (evolution); Wireless; Fault detection and isolation; Wireless sensor network; Biotelemetry; Reliability (semiconductor); Wireless network","score_opus":0.008112630226395294,"score_gpt":0.2377301595590015,"score_spread":0.2296175293326062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084246582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98538476,0.0016887242,0.0033949183,0.0003169718,0.00055465905,0.00062785484,0.000012078332,0.000102066566,0.007917954],"genre_scores_gemma":[0.98541105,0.00028885517,0.00039733638,0.000064160304,0.00040747676,0.000014648844,0.000031320313,0.00002760686,0.013357554],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971429,0.00016109431,0.0003568052,0.0010950918,0.00042406033,0.0008200589],"domain_scores_gemma":[0.99836755,0.00009858461,0.00011393706,0.0007406783,0.00046033267,0.00021894064],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00069427985,0.00034402247,0.00033946254,0.0010997949,0.0004289353,0.00016486387,0.00053807575,0.0007432758,0.000020378673],"category_scores_gemma":[0.00019830353,0.00034257257,0.00013169495,0.0018979877,0.00078802253,0.000041160216,0.00053181296,0.0007968395,6.206874e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0067819636,0.001118176,0.11718357,0.000116570314,0.0009896245,0.0012522617,0.00015589622,0.0017485777,0.8221537,0.00023651167,0.01921463,0.02904853],"study_design_scores_gemma":[0.0048501473,0.0028636234,0.0058718068,0.00031757978,0.00008456613,0.000071708106,0.0007920249,0.004978631,0.3175507,0.00007032284,0.66158164,0.0009672895],"about_ca_topic_score_codex":0.00013921977,"about_ca_topic_score_gemma":0.00012423657,"teacher_disagreement_score":0.642367,"about_ca_system_score_codex":0.00020749352,"about_ca_system_score_gemma":0.00038911754,"threshold_uncertainty_score":0.9999026},"labels":[],"label_agreement":null},{"id":"W7084250840","doi":"","title":"Par-delà les murs de la prison : le travail de care des proches des personnes incarcérées","year":2025,"lang":"fr","type":"other","venue":"Archipelago (University of Quebec in Montreal)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Prison; Perspective (graphical); Rationalisation; Nursing homes","score_opus":0.005515472901454123,"score_gpt":0.1928892905824194,"score_spread":0.18737381768096528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084250840","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95939904,0.010833231,0.0015508163,0.00019782255,0.000047514106,0.00031130796,0.00013487985,0.000023520695,0.027501872],"genre_scores_gemma":[0.94256014,0.00782187,0.01257174,0.000019820716,0.0000873127,0.0000027672575,0.00011356447,0.00005712414,0.03676568],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9981199,0.00045707537,0.00019782502,0.000573779,0.000094644754,0.00055679947],"domain_scores_gemma":[0.9991429,0.0000664671,0.00018738557,0.00038534656,0.00010140502,0.00011650169],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00020970083,0.0003798192,0.00048556848,0.00026920944,0.00027000433,0.000029503914,0.000649986,0.0013412186,0.00011796963],"category_scores_gemma":[0.00008701945,0.00046804594,0.00023654664,0.00017907385,0.0026373009,0.000007828962,0.0003591452,0.00037497535,0.000004832735],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000368238,0.00031120554,0.020425402,0.0010384328,0.00027829144,0.000072376344,0.044467196,0.00005858034,0.12340127,0.0012742782,0.00032420421,0.80798054],"study_design_scores_gemma":[0.003482177,0.0010773517,0.6277331,0.0017749886,0.00052005483,0.00005422305,0.25693235,0.0001912942,0.05594148,0.011798778,0.039021548,0.0014726733],"about_ca_topic_score_codex":0.4598111,"about_ca_topic_score_gemma":0.93002325,"teacher_disagreement_score":0.8065079,"about_ca_system_score_codex":0.00015363391,"about_ca_system_score_gemma":0.00083965337,"threshold_uncertainty_score":0.99995524},"labels":[],"label_agreement":null},{"id":"W7084292398","doi":"","title":"Rotational Stability and Subjective Results of Tecnis Eyhance Toric II Intraocular Lens","year":2025,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Mesopic vision; Intraocular lens; Astigmatism; Cataract surgery; Corneal topography; Intraocular lenses","score_opus":0.08802731656461425,"score_gpt":0.46359179235226633,"score_spread":0.37556447578765206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084292398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9876513,0.009554777,0.000305844,0.00027867535,0.00031801296,0.0003304617,0.0001689142,0.000006796689,0.0013852214],"genre_scores_gemma":[0.99021053,0.009024323,0.00039669263,0.00008859583,0.00008695354,0.00001841243,0.00003755772,0.000012594394,0.00012433804],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984131,0.00012788008,0.0006027573,0.00045665744,0.00018720303,0.00021240515],"domain_scores_gemma":[0.9986248,0.000057527293,0.00043211257,0.0004199159,0.00040308817,0.0000625609],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063757284,0.00019375788,0.00040941438,0.000226262,0.00014452534,0.00010656911,0.0008646034,0.0002489431,0.00017493335],"category_scores_gemma":[0.0004585488,0.00017956346,0.00009554117,0.000453117,0.00027721847,0.000036912275,0.0010363419,0.00017887868,3.678281e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005616811,0.00015492858,0.042043723,0.000045657132,0.00015475914,0.0000015390173,0.000029221905,0.000010617451,0.94939053,0.00014980353,0.0017662768,0.0056912713],"study_design_scores_gemma":[0.00054594874,0.000055909757,0.21865715,0.000061676714,0.000031793214,0.0000026769965,0.000023289971,0.0000069322164,0.76763135,0.0017980258,0.011040203,0.00014505576],"about_ca_topic_score_codex":0.00033613475,"about_ca_topic_score_gemma":0.000121195844,"teacher_disagreement_score":0.1817592,"about_ca_system_score_codex":0.000030292942,"about_ca_system_score_gemma":0.0001935136,"threshold_uncertainty_score":0.73223853},"labels":[],"label_agreement":null},{"id":"W7084301031","doi":"","title":"Inflation Analysis and Impact on the Business Environment in Romania","year":2025,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Inflation (cosmology); Recession; Inflation rate; Profitability index; Quarter (Canadian coin); Statistical analysis; Business cycle; European union; Agriculture","score_opus":0.06045977908703773,"score_gpt":0.4540421848496048,"score_spread":0.3935824057625671,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084301031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954687,0.0028525635,0.000219599,0.0005221868,0.00007896055,0.00021457952,0.000018449084,0.0000028707273,0.00062208605],"genre_scores_gemma":[0.98879355,0.010812399,0.00004409,0.00017282505,0.000041292646,0.000014527673,0.000025536505,0.000009057881,0.000086709755],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99898404,0.00010981236,0.0003320825,0.0002862045,0.0001243874,0.00016347728],"domain_scores_gemma":[0.9992763,0.000041103423,0.00021881853,0.0003702655,0.000052714524,0.00004083799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004423936,0.00016320728,0.00029719592,0.00047195298,0.000080684425,0.00024211369,0.00072504045,0.00016546062,0.0005448003],"category_scores_gemma":[0.00008671009,0.00011127421,0.00009074331,0.00081455003,0.00009911538,0.000017423261,0.00059890887,0.00013581042,0.0000013771385],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012672102,0.00006255162,0.30260506,0.0000067314186,0.00027988708,0.0000016353243,0.000007005121,0.00029891933,0.6899205,0.00005328717,0.000681821,0.0059559094],"study_design_scores_gemma":[0.00018883466,0.000014096719,0.86526984,0.000028664572,0.00008759408,9.384573e-7,0.0000094329,0.000052217067,0.12977669,0.0007447699,0.0037174418,0.000109506196],"about_ca_topic_score_codex":0.00040433338,"about_ca_topic_score_gemma":0.00013403776,"teacher_disagreement_score":0.56266475,"about_ca_system_score_codex":0.00002982242,"about_ca_system_score_gemma":0.0000481871,"threshold_uncertainty_score":0.5965181},"labels":[],"label_agreement":null},{"id":"W7084383319","doi":"10.5281/zenodo.17244491","title":"CANADA 🇨🇦, AUSTRALIA 🇦🇺,UK 🇬🇧 WORK VISAS AVAILABLE CALL OR WHATSAPP MR PETER OBENDE ON ☎(08143870581).","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Work (physics)","score_opus":0.023481141547837467,"score_gpt":0.23418327177099543,"score_spread":0.21070213022315798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084383319","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0024162193,0.0003845774,0.00015430943,0.00077994674,0.0008836079,0.00084912207,0.0019735,0.0003387914,0.9922199],"genre_scores_gemma":[0.024528045,0.0006196626,0.00022092319,0.0005491285,0.0005759408,1.7242078e-7,0.004586723,0.0026548526,0.96626455],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99810123,0.00015171422,0.00024882765,0.00074541423,0.00025577494,0.00049705507],"domain_scores_gemma":[0.99864006,0.000005860214,0.00014747237,0.00084302487,0.00020589441,0.00015771133],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001622178,0.00032158624,0.00025330542,0.00018361038,0.00042002514,0.00030313834,0.0010986722,0.000521691,0.062251396],"category_scores_gemma":[0.00021579741,0.0002996682,0.000066677196,0.0002894421,0.00014232994,0.0000027191338,0.0010592362,0.00035177494,0.0044643227],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015071523,0.00005124274,0.0000020186403,0.000057154866,0.000119557,0.0000215447,0.0000058377673,0.0000030724632,0.016532158,0.00013969527,0.97812927,0.0047877487],"study_design_scores_gemma":[0.00037978924,0.00036422728,0.00003695751,0.000102250786,0.00002595709,0.000020183432,0.0000093092995,0.0000015363139,0.008727347,0.000005343912,0.98999214,0.00033493413],"about_ca_topic_score_codex":0.008598225,"about_ca_topic_score_gemma":0.0033137673,"teacher_disagreement_score":0.057787076,"about_ca_system_score_codex":0.000111963236,"about_ca_system_score_gemma":0.00006665526,"threshold_uncertainty_score":0.9999455},"labels":[],"label_agreement":null},{"id":"W7084384910","doi":"10.11604/pamj.2025.52.57.48098","title":"Perspectives of Mauritians living with neurological disability and their family caregivers during the COVID-19 lockdown: a thematic analysis from an African nation","year":2025,"lang":"en","type":"article","venue":"Pan African Medical Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Armed Forces","funders":"","keywords":"Family caregivers; Thematic analysis; Neurorehabilitation; Social support; Qualitative research; Social model of disability; Dementia","score_opus":0.00731647308852906,"score_gpt":0.23732290120946237,"score_spread":0.2300064281209333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084384910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881592,0.00051646965,0.0041734236,0.006848113,0.00003418993,0.00010195134,0.000038497215,0.000010123256,0.00011805463],"genre_scores_gemma":[0.9990233,0.00035482296,0.00017931027,0.00029643805,0.00011812687,0.000006387523,0.000008182116,0.0000064082615,0.0000070330498],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986293,0.0003550685,0.00025999887,0.00033313633,0.00021979504,0.00020273245],"domain_scores_gemma":[0.99911416,0.0001525332,0.00014955734,0.00029023705,0.000078076286,0.00021546103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045279044,0.0001496018,0.00027909654,0.00008299861,0.00019186261,0.000041915486,0.0003738812,0.00018619889,0.00004981099],"category_scores_gemma":[0.0006598247,0.000082818726,0.000107537344,0.0003541149,0.0010935501,0.0000044730446,0.00016577156,0.00030330857,8.656751e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020941333,0.0020848163,0.49051613,0.0002273768,0.006575476,0.00008804069,0.030757004,0.00035584345,0.41930062,0.00074934494,0.00019332176,0.04705789],"study_design_scores_gemma":[0.0018751862,0.0020632118,0.84182054,0.00008580147,0.0009563984,0.0002690611,0.14336202,0.0019713086,0.0041966815,0.0016676012,0.001176018,0.00055618526],"about_ca_topic_score_codex":0.00018011976,"about_ca_topic_score_gemma":0.0005445847,"teacher_disagreement_score":0.41510394,"about_ca_system_score_codex":0.00003356975,"about_ca_system_score_gemma":0.0001786235,"threshold_uncertainty_score":0.40292308},"labels":[],"label_agreement":null},{"id":"W7084386144","doi":"10.57745/dhj7wi","title":"15.0001.2024.02.26.18.13.51.000.N.miniseed","year":2025,"lang":"fr","type":"dataset","venue":"Recherche Data Gouv France","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Rimouski","funders":"","keywords":"","score_opus":0.08678848618683323,"score_gpt":0.3471592503059008,"score_spread":0.26037076411906757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084386144","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0021804464,0.033432126,0.00083800015,0.003719085,0.0064730155,0.0010804133,0.95075625,0.00011428528,0.0014063952],"genre_scores_gemma":[0.00043729987,0.070471935,0.007444878,0.0024401583,0.0026072282,0.00010883948,0.88513803,0.00014019152,0.031211417],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9918515,0.0012367453,0.0013892276,0.0034883877,0.00044986157,0.0015842818],"domain_scores_gemma":[0.98916304,0.0003338929,0.00070780696,0.00906422,0.00034922152,0.0003818434],"candidate_categories":["metaepi_narrow","open_science","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.0021546986,0.0014737868,0.0014610057,0.00025951196,0.000299926,0.0002685616,0.0071867,0.009146966,0.0014419861],"category_scores_gemma":[0.002445754,0.0015672564,0.0003535881,0.0010825659,0.0009208411,0.00002811194,0.0056124483,0.003454128,0.0005971676],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002205179,0.00048044353,0.00009941494,0.0007559769,0.00060456956,0.00005238959,0.0000127788435,0.0000058390624,0.07372027,0.00003385745,0.88260144,0.041412514],"study_design_scores_gemma":[0.0010328095,0.000553652,0.00014824784,0.00048508059,0.00046574304,0.000065000844,0.00004064877,0.00015169331,0.037506744,0.00014538606,0.9578708,0.0015342293],"about_ca_topic_score_codex":0.0011179913,"about_ca_topic_score_gemma":0.0012307689,"teacher_disagreement_score":0.075269334,"about_ca_system_score_codex":0.0001978469,"about_ca_system_score_gemma":0.0013347451,"threshold_uncertainty_score":0.99980116},"labels":[],"label_agreement":null},{"id":"W7084387776","doi":"10.4230/artifacts.24666","title":"KaMinPar","year":2025,"lang":"en","type":"other","venue":"DROPS (Schloss Dagstuhl – Leibniz Center for Informatics)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Disjoint sets; Partition (number theory); Speedup; Graph; Graph partition","score_opus":0.005440651133032692,"score_gpt":0.23423479217040824,"score_spread":0.22879414103737555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084387776","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0071487213,0.0018197048,0.010320652,0.0005718908,0.005683841,0.0035151094,0.010293909,0.00045431912,0.96019185],"genre_scores_gemma":[0.015245389,0.003063896,0.013058972,0.0027521537,0.0023467983,0.00034980456,0.014586538,0.0008972439,0.9476992],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979425,0.000023586243,0.00072513643,0.00043519982,0.00019752781,0.0006760555],"domain_scores_gemma":[0.9981843,0.000010940591,0.00046336657,0.0010806356,0.00013262774,0.00012807945],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001657346,0.00060587283,0.0005733881,0.00032103926,0.00010657369,0.00010734716,0.0008571394,0.0019420177,0.00030409585],"category_scores_gemma":[0.0000726885,0.000567426,0.00033422458,0.00014157205,0.00019526244,0.000005680996,0.0005673057,0.00036276074,0.00015913937],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013018136,0.00019375449,0.00017428507,0.0007969113,0.00063660444,0.000002550922,0.00006288851,0.0000027166955,0.007112048,0.0011814306,0.9771579,0.012548754],"study_design_scores_gemma":[0.0013967863,0.0003250679,0.000024611574,0.00017637541,0.00008167175,0.00001452601,0.00006479756,0.000057876503,0.014865199,0.00008342241,0.9822992,0.00061048096],"about_ca_topic_score_codex":0.00002779391,"about_ca_topic_score_gemma":0.00010013702,"teacher_disagreement_score":0.012492646,"about_ca_system_score_codex":0.00003104096,"about_ca_system_score_gemma":0.0001842531,"threshold_uncertainty_score":0.9996777},"labels":[],"label_agreement":null},{"id":"W7084390571","doi":"10.5281/zenodo.17246720","title":"CANADA 🇨🇦, AUSTRALIA 🇦🇺,UK 🇬🇧 WORK VISAS AVAILABLE CALL OR WHATSAPP MR PETER OBENDE ON ☎(08143870581).","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Work (physics)","score_opus":0.023481141547837467,"score_gpt":0.23418327177099543,"score_spread":0.21070213022315798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084390571","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0024162193,0.0003845774,0.00015430943,0.00077994674,0.0008836079,0.00084912207,0.0019735,0.0003387914,0.9922199],"genre_scores_gemma":[0.024528045,0.0006196626,0.00022092319,0.0005491285,0.0005759408,1.7242078e-7,0.004586723,0.0026548526,0.96626455],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99810123,0.00015171422,0.00024882765,0.00074541423,0.00025577494,0.00049705507],"domain_scores_gemma":[0.99864006,0.000005860214,0.00014747237,0.00084302487,0.00020589441,0.00015771133],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001622178,0.00032158624,0.00025330542,0.00018361038,0.00042002514,0.00030313834,0.0010986722,0.000521691,0.062251396],"category_scores_gemma":[0.00021579741,0.0002996682,0.000066677196,0.0002894421,0.00014232994,0.0000027191338,0.0010592362,0.00035177494,0.0044643227],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015071523,0.00005124274,0.0000020186403,0.000057154866,0.000119557,0.0000215447,0.0000058377673,0.0000030724632,0.016532158,0.00013969527,0.97812927,0.0047877487],"study_design_scores_gemma":[0.00037978924,0.00036422728,0.00003695751,0.000102250786,0.00002595709,0.000020183432,0.0000093092995,0.0000015363139,0.008727347,0.000005343912,0.98999214,0.00033493413],"about_ca_topic_score_codex":0.008598225,"about_ca_topic_score_gemma":0.0033137673,"teacher_disagreement_score":0.057787076,"about_ca_system_score_codex":0.000111963236,"about_ca_system_score_gemma":0.00006665526,"threshold_uncertainty_score":0.9999455},"labels":[],"label_agreement":null},{"id":"W7084392518","doi":"10.1002/jcop.70042/v2/response1","title":"Author response for \"Community Connection and Loneliness in Canada\"","year":2025,"lang":"en","type":"peer-review","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Loneliness; Connection (principal bundle); Gossip; Subject (documents)","score_opus":0.02869320190821709,"score_gpt":0.30929270003638926,"score_spread":0.28059949812817214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084392518","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4807039,0.08578747,0.0014183595,0.40986326,0.010365205,0.00482499,0.005308265,0.000055132034,0.0016734254],"genre_scores_gemma":[0.21465708,0.02277011,0.0022415428,0.019375237,0.00093458453,0.00078566815,0.011502089,0.00012006385,0.7276136],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99887687,0.00023593388,0.0003084169,0.0003110329,0.000060416867,0.00020734414],"domain_scores_gemma":[0.999173,0.00007402029,0.00009529915,0.00045477005,0.00016129839,0.000041618834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067967124,0.00021176701,0.000363955,0.00007185095,0.000069512615,0.0000115682815,0.0002282385,0.0005722331,0.000017336504],"category_scores_gemma":[0.0007095792,0.00019684446,0.000052395968,0.000095707444,0.00004150146,5.232063e-7,0.00024638235,0.00030650102,2.4007514e-7],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045833667,0.000027775686,0.000023919332,0.0013152474,0.000044306867,0.0000012779676,0.000002009767,0.0000011801861,0.036959756,0.000025931009,0.9496912,0.011449065],"study_design_scores_gemma":[0.0003417219,0.00017683725,0.00044193704,0.00036335704,0.000038523624,0.0000068757754,0.000028027553,0.000011428033,0.017328018,0.000050251227,0.98098975,0.00022325042],"about_ca_topic_score_codex":0.4362346,"about_ca_topic_score_gemma":0.9546673,"teacher_disagreement_score":0.72594017,"about_ca_system_score_codex":0.00007803957,"about_ca_system_score_gemma":0.0017728837,"threshold_uncertainty_score":0.80270845},"labels":[],"label_agreement":null},{"id":"W7084395364","doi":"10.57745/ccgcqu","title":"results_gps_0226.pkl","year":2025,"lang":"en","type":"dataset","venue":"Recherche Data Gouv France","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Rimouski","funders":"","keywords":"","score_opus":0.09472752928974434,"score_gpt":0.36498916003323706,"score_spread":0.27026163074349274,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084395364","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00018633496,0.004526338,0.00012523083,0.000688138,0.0011518778,0.0003262976,0.9927135,0.000030488576,0.00025178658],"genre_scores_gemma":[0.000008598204,0.02022272,0.0030243755,0.00095334585,0.0009621193,0.00003232583,0.9694992,0.000022854123,0.005274485],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970126,0.00036206126,0.00047452145,0.0014714537,0.00018600798,0.0004933498],"domain_scores_gemma":[0.99363256,0.00007385031,0.00024327869,0.0058387825,0.00011933504,0.00009220021],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0010785717,0.00048058538,0.00047063778,0.000107155625,0.00008918911,0.00007021293,0.003766177,0.0035516387,0.00007110317],"category_scores_gemma":[0.0016393601,0.00046883023,0.00009923306,0.0003446155,0.00019471196,0.0000045750517,0.0027736826,0.0012726842,0.000051082974],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006653218,0.00007885634,0.0000027700726,0.0001303086,0.00012356734,0.0000074767727,0.0000010515137,7.749989e-7,0.022492746,0.0000033911188,0.96843296,0.008659577],"study_design_scores_gemma":[0.0004049105,0.00013532669,0.000022431288,0.00009411381,0.000083508035,0.00001120639,0.000004008046,0.000005821426,0.01604881,0.000041761163,0.9826521,0.00049598736],"about_ca_topic_score_codex":0.0002767557,"about_ca_topic_score_gemma":0.000360037,"teacher_disagreement_score":0.02321433,"about_ca_system_score_codex":0.00004085793,"about_ca_system_score_gemma":0.000551894,"threshold_uncertainty_score":0.99977636},"labels":[],"label_agreement":null},{"id":"W7084409527","doi":"10.5281/zenodo.17161045","title":"Corresponding dataset for: \"Within-litter variation in maternal care is a key contributor to individual differences in offspring behavior and monoamine neurochemistry in female Long-Evans rats\"","year":2025,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Offspring; Offspring; Variation (astronomy); Variation (astronomy); Key (lock); Key (lock)","score_opus":0.020400595865088498,"score_gpt":0.2592302290302741,"score_spread":0.2388296331651856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084409527","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.47744757,0.00006585934,0.000038548766,0.00008938774,0.000081206534,0.0004211267,0.52184004,0.00000986151,0.0000064220894],"genre_scores_gemma":[0.2520801,0.00013573904,0.00007368901,0.00012151626,0.00006902934,0.0000013619677,0.74736863,0.0001093114,0.000040620504],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99837595,0.00013614105,0.00037431702,0.0006457036,0.00014278223,0.00032507477],"domain_scores_gemma":[0.99924505,0.00001313547,0.0001235357,0.0004214858,0.00012183334,0.000074984855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003110324,0.0002158031,0.0002520926,0.00036817644,0.0001835772,0.00032915393,0.0007635667,0.00035739987,0.00013056262],"category_scores_gemma":[0.00035266453,0.00023892877,0.000025439966,0.00025966906,0.00006177137,0.000009816415,0.001534278,0.00031249464,0.0000122792435],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009854069,0.00032736792,0.0020785853,0.00077062624,0.00007480611,0.000092449,0.00087075966,0.000019927089,0.36714303,0.000010236718,0.62122464,0.0064021684],"study_design_scores_gemma":[0.0014331777,0.00047898947,0.037583888,0.0001987782,0.000043872587,0.000027953656,0.00016927386,0.000025157928,0.026179833,0.00000358088,0.933452,0.00040350528],"about_ca_topic_score_codex":0.00011430309,"about_ca_topic_score_gemma":0.00007094058,"teacher_disagreement_score":0.3409632,"about_ca_system_score_codex":0.00007503408,"about_ca_system_score_gemma":0.00001614518,"threshold_uncertainty_score":0.9743233},"labels":[],"label_agreement":null},{"id":"W7084413833","doi":"10.57745/uqo1xi","title":"16.0001.2024.02.26.18.13.51.000.Z.miniseed","year":2025,"lang":"fr","type":"dataset","venue":"Recherche Data Gouv France","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Rimouski","funders":"","keywords":"","score_opus":0.08710926018772146,"score_gpt":0.34714064689438395,"score_spread":0.2600313867066625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084413833","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0019032514,0.032489266,0.0011239822,0.0036617378,0.006499789,0.0010792909,0.951245,0.000114013616,0.0018836719],"genre_scores_gemma":[0.000563366,0.07369971,0.005651171,0.0024329189,0.0025684673,0.00010676697,0.8805386,0.00013835319,0.03430067],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9918727,0.0012435814,0.0013837742,0.0034727748,0.00044733234,0.0015798181],"domain_scores_gemma":[0.9891817,0.0003312417,0.00071103225,0.009047225,0.00034814468,0.00038067013],"candidate_categories":["metaepi_narrow","open_science","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.0021743022,0.0014715488,0.0014585246,0.0002593206,0.00030071422,0.00026724013,0.007116354,0.00913268,0.0014950898],"category_scores_gemma":[0.0023882382,0.0015651438,0.0003558199,0.0010794977,0.00091900455,0.000027834632,0.005441145,0.0034375964,0.00053512957],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022574181,0.0004820673,0.000093098046,0.0007651282,0.0006068129,0.00004145237,0.000011194799,0.0000045646216,0.05596697,0.000040817213,0.8900262,0.051735945],"study_design_scores_gemma":[0.0010173727,0.00054236565,0.000105681735,0.00048447138,0.00046313362,0.0000643685,0.000044805336,0.000101131045,0.04129142,0.00018969542,0.95416874,0.0015268191],"about_ca_topic_score_codex":0.0013575234,"about_ca_topic_score_gemma":0.001602755,"teacher_disagreement_score":0.07070643,"about_ca_system_score_codex":0.00027920303,"about_ca_system_score_gemma":0.0013138752,"threshold_uncertainty_score":0.99980336},"labels":[],"label_agreement":null},{"id":"W7084423949","doi":"10.1007/978-981-96-7933-1","title":"Canada’s Cities in a Changing World 1920–2120","year":2025,"lang":"en","type":"book","venue":"Advances in 21st century human settlements","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"University of Ontario Institute of Technology","keywords":"Everyday life; Government (linguistics); Feature (linguistics); Agency (philosophy)","score_opus":0.005839974155626616,"score_gpt":0.24255029090036984,"score_spread":0.23671031674474322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084423949","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.018990383,0.05576269,0.000009146102,0.00056114956,0.0053334087,0.0017208273,0.0022640193,0.00004468693,0.9153137],"genre_scores_gemma":[0.066020295,0.024838585,0.00020882598,0.0018296201,0.0008774613,0.00013827646,0.0063588778,0.00009893644,0.8996291],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978709,0.000043194083,0.00053921907,0.00068976753,0.00020989351,0.0006470021],"domain_scores_gemma":[0.9991885,0.000010923204,0.00021233512,0.0004934518,0.000041517447,0.00005327054],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013379329,0.00041586393,0.0004242834,0.0008872147,0.000083106665,0.000024176768,0.0005309932,0.00038147264,0.00010832772],"category_scores_gemma":[0.000016169834,0.00046196664,0.00007331291,0.0002932374,0.000112280686,0.000006046577,0.00052281865,0.0003929344,0.0000024934304],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009904965,0.0012584266,0.030308126,0.00514899,0.0014628543,0.0008801708,0.0006827504,0.0004926967,0.12397262,0.14205275,0.4045965,0.28815362],"study_design_scores_gemma":[0.0006475549,0.00008501186,0.00018818204,0.00038679747,0.000014915631,0.0000013468349,0.00008176418,8.7769985e-7,0.003482672,0.0008137373,0.99385834,0.00043881254],"about_ca_topic_score_codex":0.0037638734,"about_ca_topic_score_gemma":0.71762437,"teacher_disagreement_score":0.7138605,"about_ca_system_score_codex":0.00040788527,"about_ca_system_score_gemma":0.0009638545,"threshold_uncertainty_score":0.9997832},"labels":[],"label_agreement":null},{"id":"W7084495880","doi":"10.1002/jcop.70042/v2/decision1","title":"Decision letter for \"Community Connection and Loneliness in Canada\"","year":2025,"lang":"en","type":"peer-review","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Loneliness; Connection (principal bundle)","score_opus":0.017091371925059884,"score_gpt":0.27835917672399063,"score_spread":0.26126780479893075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084495880","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.40925932,0.18715209,0.015739752,0.3254916,0.040413167,0.008870499,0.0057066567,0.00008089809,0.0072860066],"genre_scores_gemma":[0.22051904,0.20126201,0.011591227,0.17274706,0.004577392,0.0012353953,0.037385285,0.00026087993,0.3504217],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99909467,0.0000627877,0.00029402293,0.00029998642,0.00006472276,0.00018379261],"domain_scores_gemma":[0.9992997,0.000047452337,0.00007944955,0.00041003048,0.0001331095,0.000030226485],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025233594,0.00019790247,0.00033474274,0.000058095226,0.00005723385,0.000011876524,0.00021810824,0.0004951723,0.000020967233],"category_scores_gemma":[0.00022912359,0.00017465661,0.00005107122,0.00007302899,0.000030248064,5.9599046e-7,0.00026076337,0.00027616252,3.073153e-7],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042185482,0.000016663056,0.000025328722,0.00073874503,0.00002404184,6.638951e-7,5.212903e-7,0.0000013111238,0.009739021,0.000011741539,0.9502894,0.039110363],"study_design_scores_gemma":[0.00034623264,0.0000841163,0.00017443235,0.00047189044,0.00003082728,0.0000046589066,0.0000059098047,0.0000111156405,0.0108114,0.00009748651,0.9877627,0.00019923566],"about_ca_topic_score_codex":0.41606435,"about_ca_topic_score_gemma":0.9749417,"teacher_disagreement_score":0.5588773,"about_ca_system_score_codex":0.000056500478,"about_ca_system_score_gemma":0.00065556704,"threshold_uncertainty_score":0.712229},"labels":[],"label_agreement":null},{"id":"W7084498749","doi":"10.1007/978-3-031-95111-4_22","title":"Exploring the Potential of Real-Time Crash Risk-Based Intelligent Transportation Systems on Urban Networks","year":2025,"lang":"en","type":"book-chapter","venue":"Lecture notes in civil engineering","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Crash; Drone; Poison control; Control (management); Bayesian network; Risk assessment","score_opus":0.00849589251667088,"score_gpt":0.18611919412373068,"score_spread":0.1776233016070598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084498749","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1836848,0.007776993,0.7932305,0.0003062086,0.006852102,0.0024772796,0.00057275646,0.00023544855,0.0048639397],"genre_scores_gemma":[0.9958547,0.0025420927,0.00022837089,0.000020117364,0.00050076406,0.000035515626,0.00031733073,0.000062004576,0.00043914045],"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885017,0.000018844907,0.00039786598,0.0003777,0.00012508004,0.00023032399],"domain_scores_gemma":[0.9992291,0.00006354991,0.0001740462,0.00045061542,0.00005273798,0.000029996256],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00014049909,0.00033561172,0.0003355471,0.00015918119,0.000032426407,0.000017407781,0.00025784175,0.00063669984,0.000011139209],"category_scores_gemma":[0.00004882375,0.00028269793,0.000163816,0.00006660485,0.00004414996,0.0000015433915,0.00002959765,0.0004766135,0.0000011109018],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006407882,0.000013268578,0.000022217473,0.000117191164,0.00010560499,0.0000052889245,0.00001621047,0.89358836,0.10124756,0.0003597475,0.00003711624,0.0044233417],"study_design_scores_gemma":[0.0018433258,0.0021388226,0.0024679988,0.004461735,0.0008134709,0.000011543476,0.000010229479,0.27821803,0.63823617,0.00048037758,0.068417214,0.0029011148],"about_ca_topic_score_codex":0.000047207053,"about_ca_topic_score_gemma":0.00017530251,"teacher_disagreement_score":0.81216985,"about_ca_system_score_codex":0.000034707617,"about_ca_system_score_gemma":0.00004490392,"threshold_uncertainty_score":0.9999625},"labels":[],"label_agreement":null},{"id":"W7084503686","doi":"10.1007/978-3-031-95288-3_35","title":"Comparing the Diagonal Compression Response of Old and Replicated Multi-Wythe Unreinforced Brick Masonry Walls","year":2025,"lang":"en","type":"book-chapter","venue":"Lecture notes in civil engineering","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Unreinforced masonry building; Masonry; Brick; Diagonal; Shear wall; Compression (physics); Masonry veneer; Brittleness","score_opus":0.010460304239010206,"score_gpt":0.21829410884298914,"score_spread":0.20783380460397893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084503686","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8908264,0.019069966,0.08212206,0.0012150321,0.0013595318,0.0018809753,0.00020412666,0.00017181782,0.0031500624],"genre_scores_gemma":[0.9960404,0.0007025453,0.0010350873,0.00009038665,0.0000979762,0.000011597451,0.00008667263,0.00004188533,0.0018934462],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989274,0.000023845483,0.00034026682,0.00039638614,0.0000934902,0.000218592],"domain_scores_gemma":[0.9990936,0.00015212657,0.00013262508,0.0005382235,0.000048152597,0.00003530239],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021731727,0.00031168442,0.0003656896,0.00013010447,0.00003532171,0.000017871696,0.00028971737,0.0007924288,0.000009335371],"category_scores_gemma":[0.00025600524,0.00024698046,0.00008983916,0.00005709636,0.00009735352,0.0000014812241,0.00038450066,0.0004544084,5.6000925e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031725445,0.000013086677,0.00018795916,0.0001268947,0.000104162194,0.000005095606,0.00003915595,0.012416694,0.98416704,0.0003494728,0.000049554423,0.0022236586],"study_design_scores_gemma":[0.0021188862,0.00033188422,0.0064977435,0.0013994334,0.000119879995,0.000054012104,0.000003204365,0.032267038,0.88791865,0.00025830502,0.06796732,0.0010636223],"about_ca_topic_score_codex":0.000021020423,"about_ca_topic_score_gemma":0.000111275935,"teacher_disagreement_score":0.10521397,"about_ca_system_score_codex":0.000021900114,"about_ca_system_score_gemma":0.000041996416,"threshold_uncertainty_score":0.9999983},"labels":[],"label_agreement":null},{"id":"W7084578310","doi":"10.5281/zenodo.17257418","title":"RISK (Regional Inference of Significant Kinships)","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Inference; Biological network; Risk assessment; Modular design; Annotation; Work (physics); Social network analysis","score_opus":0.021773757061897256,"score_gpt":0.2430344571393718,"score_spread":0.22126070007747456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084578310","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005441174,0.001020932,0.006299813,0.00037770337,0.00032102593,0.0007671338,0.0030770418,0.00042689298,0.9822683],"genre_scores_gemma":[0.617118,0.01578243,0.0027165336,0.0003517194,0.0014674567,2.7141544e-7,0.0219355,0.01093179,0.3296963],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989038,0.00016894187,0.00018831411,0.00039858196,0.00013873208,0.00020163912],"domain_scores_gemma":[0.9989937,0.000005572829,0.00020479463,0.00051286136,0.00022243228,0.000060672206],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019077498,0.00015617382,0.00016932077,0.00019754084,0.00023215654,0.00006936856,0.00081314007,0.0003630839,0.0052933916],"category_scores_gemma":[0.00034062576,0.0001592589,0.00006338795,0.00018018715,0.00023575587,0.0000013399664,0.00092459534,0.00020150353,0.0004322562],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057751753,0.00009317314,0.00000537279,0.000084628664,0.00012912926,0.0000017368368,0.0000191419,0.000004129488,0.14619814,0.0018565167,0.8051459,0.046404354],"study_design_scores_gemma":[0.00023157579,0.00025613763,0.00013851344,0.00004601157,0.000022209397,0.0000050210842,0.00001899392,0.000005705375,0.0116867265,0.000082118095,0.9873526,0.00015435518],"about_ca_topic_score_codex":0.00005160316,"about_ca_topic_score_gemma":0.0000019640802,"teacher_disagreement_score":0.652572,"about_ca_system_score_codex":0.000014492408,"about_ca_system_score_gemma":0.000012851448,"threshold_uncertainty_score":0.9956159},"labels":[],"label_agreement":null},{"id":"W7084581153","doi":"10.1007/978-3-031-95288-3_2","title":"A Parametric Investigation of the Variables Influencing the Second-Order Behaviour of Masonry Walls","year":2025,"lang":"en","type":"book-chapter","venue":"Lecture notes in civil engineering","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Masonry; Moment (physics); Shear and moment diagram; Eccentricity (behavior); Parametric statistics; Bending moment; Moment distribution method","score_opus":0.005465257783601519,"score_gpt":0.18865832264676244,"score_spread":0.18319306486316092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084581153","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96604306,0.010674618,0.013794478,0.0006379394,0.0015871428,0.0013011271,0.0002547872,0.000043268003,0.0056635933],"genre_scores_gemma":[0.99727654,0.00019620034,0.001139775,0.000104185114,0.00009223151,0.000010543055,0.000030558418,0.00003118469,0.0011187666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991127,0.00001609933,0.00035173912,0.00024942812,0.000109018016,0.00016098426],"domain_scores_gemma":[0.9991128,0.00007885384,0.00020064684,0.0005045401,0.00008643537,0.000016721331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015113803,0.00023267062,0.00026808877,0.00015139527,0.000022052554,0.000009146921,0.00037697313,0.0007880512,0.000028604922],"category_scores_gemma":[0.00026131512,0.00016215426,0.000107879074,0.00019401271,0.00009530451,0.0000014622249,0.00023738168,0.0004090428,2.0296083e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014822707,0.000009120203,0.0014605143,0.00036481646,0.00014548574,9.951003e-7,0.00007656879,0.01844678,0.9760779,0.0014910421,0.000056234338,0.0018557318],"study_design_scores_gemma":[0.0002896165,0.000117137795,0.0028214513,0.0005957444,0.00010978128,0.000009380658,0.0000026688656,0.0006508343,0.98071164,0.0026734935,0.011650094,0.00036812987],"about_ca_topic_score_codex":0.000027706667,"about_ca_topic_score_gemma":0.00043697408,"teacher_disagreement_score":0.03123351,"about_ca_system_score_codex":0.000023086604,"about_ca_system_score_gemma":0.0001289951,"threshold_uncertainty_score":0.6612459},"labels":[],"label_agreement":null},{"id":"W7084586170","doi":"10.1386/public_00231_2","title":"Introduction: Against Oblivion: Community Archives, Building Alliances","year":2025,"lang":"en","type":"article","venue":"Public","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University; Queen's University","funders":"","keywords":"Context (archaeology); Public policy; Government (linguistics); Work (physics)","score_opus":0.012455104564616737,"score_gpt":0.24535791555816253,"score_spread":0.2329028109935458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084586170","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9709605,0.0010705189,0.0019894768,0.01844742,0.000814434,0.00011032402,0.0000088214065,0.000046321453,0.006552212],"genre_scores_gemma":[0.99452233,0.0006390579,0.0016682079,0.00077697006,0.0007300926,0.000018361243,0.00013276328,0.0000084702515,0.0015037516],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99924237,0.000108596956,0.00014891931,0.00022959692,0.00004607819,0.00022447116],"domain_scores_gemma":[0.99935824,0.000010513862,0.00004633454,0.0005004274,0.00004175135,0.000042740437],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000170523,0.000111047346,0.000106934065,0.00008380049,0.00021541122,0.00006748942,0.00037349472,0.00016032759,0.00002153987],"category_scores_gemma":[0.000115031835,0.00010715707,0.000053908185,0.00020159702,0.00016617212,0.0000033452645,0.0003162094,0.00021605795,0.0000056812755],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020151838,0.00007847684,0.0008876548,0.000017703285,0.000054100477,3.7807646e-7,0.000009818893,0.0000067835604,0.93213284,0.0056049605,0.010197854,0.050989266],"study_design_scores_gemma":[0.00017557875,0.00007385929,0.0034549497,0.000006269541,0.0000053243766,0.0000033128542,0.000040841092,0.000019205474,0.19066235,0.0007112661,0.80474305,0.00010399508],"about_ca_topic_score_codex":0.000008954153,"about_ca_topic_score_gemma":0.000037784284,"teacher_disagreement_score":0.7945452,"about_ca_system_score_codex":0.000008125543,"about_ca_system_score_gemma":0.000071115785,"threshold_uncertainty_score":0.43697384},"labels":[],"label_agreement":null},{"id":"W7084594143","doi":"10.1007/978-981-96-4771-2_54","title":"Modelling and Experiments of the Triple Point Reflection in Detonations","year":2025,"lang":"en","type":"book-chapter","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Mach number; Shock (circulatory); Detonation; Heat capacity ratio; Compressibility; Mach reflection; Reflection (computer programming); Shock wave","score_opus":0.020101783543142515,"score_gpt":0.25534612862582545,"score_spread":0.23524434508268294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084594143","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12275844,0.00513309,0.0064055165,0.001180571,0.001227107,0.0012613994,0.00009846414,0.000024213332,0.8619112],"genre_scores_gemma":[0.56546956,0.0024373792,0.0017716495,0.00013991984,0.000075424294,0.000014241274,0.00006028053,0.000021782424,0.43000972],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995151,0.0000073261594,0.00017537901,0.00019394621,0.00004189596,0.00006635808],"domain_scores_gemma":[0.99967384,0.000002426773,0.000069764385,0.00020849462,0.000035399637,0.000010096627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004412087,0.000099730096,0.00011240683,0.000061273924,0.000024695952,0.0000048736565,0.00009279036,0.00039957653,0.000015384305],"category_scores_gemma":[0.00000623326,0.0000767795,0.000047110483,0.000020264746,0.000058337657,5.301324e-7,0.00015099617,0.000088664674,2.931505e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006587079,0.00003512494,0.0000324303,0.000035964997,0.000079956255,3.6810994e-7,0.000025924974,0.00027143335,0.95078754,0.04349043,0.0008525185,0.004322423],"study_design_scores_gemma":[0.00044408557,0.00014595258,0.000023362263,0.000082728075,0.000027166532,0.0000040553664,0.000015433938,0.00068524986,0.85202986,0.007826668,0.13851178,0.00020368923],"about_ca_topic_score_codex":0.000029522138,"about_ca_topic_score_gemma":0.000097451935,"teacher_disagreement_score":0.44271114,"about_ca_system_score_codex":0.0000104075025,"about_ca_system_score_gemma":0.00004593369,"threshold_uncertainty_score":0.31309772},"labels":[],"label_agreement":null},{"id":"W7084595976","doi":"10.5281/zenodo.17266242","title":"From Courtly Dress to Italian Style: Fashion History at Florence's Museo della Moda e del Costume","year":2025,"lang":"en","type":"book-chapter","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Seneca Polytechnic","funders":"","keywords":"Clothing; Museology; The Renaissance; Institution; National museum; Costume design; Textile; Politics; Narrative","score_opus":0.021445041311723166,"score_gpt":0.21682773830062763,"score_spread":0.19538269698890445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084595976","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.052103166,0.0022940973,0.0032687515,0.0018477348,0.0018673221,0.001989886,0.00602295,0.0007170448,0.929889],"genre_scores_gemma":[0.27983072,0.0040772753,0.0013610083,0.0019554067,0.002297767,6.591102e-7,0.05376397,0.0048034173,0.65190977],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980101,0.000087227374,0.00034106098,0.0009063033,0.00027950705,0.00037577449],"domain_scores_gemma":[0.998194,0.0000075285907,0.00017075193,0.0009154189,0.00049351313,0.00021878537],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00019226482,0.00034558336,0.00029631442,0.00022516988,0.0005842815,0.00017152929,0.0012524041,0.00064149086,0.0074847806],"category_scores_gemma":[0.00014256507,0.00038938285,0.00011314117,0.000070929236,0.0002271009,0.0000059627573,0.00288539,0.00033178306,0.0026148616],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019174413,0.00004802101,5.005026e-7,0.00004378473,0.00016859955,0.000020043724,0.00017335387,0.000012784035,0.26157898,0.002409953,0.6869941,0.04835815],"study_design_scores_gemma":[0.00034544378,0.0003961681,0.000019306266,0.000061886,0.000045952827,0.00001949256,0.0000292306,0.000028100694,0.006192156,0.00011847732,0.99234253,0.00040125774],"about_ca_topic_score_codex":0.00003364958,"about_ca_topic_score_gemma":0.000009295701,"teacher_disagreement_score":0.30534843,"about_ca_system_score_codex":0.00047960642,"about_ca_system_score_gemma":0.000024062729,"threshold_uncertainty_score":0.9998558},"labels":[],"label_agreement":null},{"id":"W7084597179","doi":"10.6084/m9.figshare.c.8070748","title":"Applying an implementation science lens to understand physician-level variation in patient length of stay in internal medicine","year":2025,"lang":"en","type":"other","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université du Québec en Outaouais; Institut du Savoir Montfort; Hospital for Sick Children; SickKids Foundation; University Health Network; University of Toronto; Women's College Hospital; Trillium Health Centre","funders":"","keywords":"Variation (astronomy); Metric (unit); Perception; Qualitative research; Population; Health care; Health services research","score_opus":0.039410794631743684,"score_gpt":0.31912752429553715,"score_spread":0.27971672966379346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084597179","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13873623,0.00223429,0.0010720053,0.0009516503,0.0015875796,0.012016784,0.5024838,0.00013271326,0.340785],"genre_scores_gemma":[0.9421768,0.00011498951,0.0008894961,0.00057904766,0.00036626222,0.0002955538,0.05189177,0.00012880228,0.00355728],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991633,0.000022387512,0.00020908486,0.00032716285,0.000118528,0.0001594853],"domain_scores_gemma":[0.99956423,0.000004195136,0.00014532759,0.00020824501,0.000053883905,0.000024099016],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000059697897,0.0001224239,0.00015478328,0.00033004404,0.000013062959,0.000008493803,0.00021437259,0.00018636097,0.0025546236],"category_scores_gemma":[0.000083743565,0.00011904056,0.000015792748,0.00025059495,0.000021109638,0.0000030405176,0.00015851381,0.00007523477,0.0000044755943],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000062738414,0.00011587948,0.000063443265,0.00018502612,0.000034297664,0.0000037739253,0.0003936009,0.000022069325,0.80909026,0.00012907058,0.127162,0.06273785],"study_design_scores_gemma":[0.0027989387,0.0025146937,0.014387367,0.0058560194,0.000028021552,0.000002365559,0.002534185,0.00014809707,0.47761875,0.00019419841,0.4929941,0.00092328386],"about_ca_topic_score_codex":0.00043385243,"about_ca_topic_score_gemma":0.0022153708,"teacher_disagreement_score":0.8034406,"about_ca_system_score_codex":0.000050149058,"about_ca_system_score_gemma":0.00015317302,"threshold_uncertainty_score":0.9983572},"labels":[],"label_agreement":null},{"id":"W7084600698","doi":"10.48495/8s45qn13k","title":"Joseph Soames to Laura Alice Harper O'Brien, 13th June 1893. IE TCD MS 9385/1310","year":2025,"lang":"en","type":"other","venue":"Digital Collections (East Carolina University)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Receipt; Surrender; Commission; Payment; Alice (programming language); Newspaper; Property (philosophy); Government (linguistics)","score_opus":0.004655785604344156,"score_gpt":0.18588441470965736,"score_spread":0.1812286291053132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084600698","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004088043,0.00026470167,0.0011516801,0.00087912724,0.0015135328,0.00064791477,0.0020939943,0.00021039568,0.9891506],"genre_scores_gemma":[0.02563133,0.00023508655,0.00031130607,0.0002052228,0.00061617594,0.000006406644,0.0005365352,0.0001523255,0.9723056],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983418,0.000038096012,0.00019742061,0.00081966724,0.000147237,0.00045577085],"domain_scores_gemma":[0.998799,0.000008050247,0.00013375805,0.0006630698,0.00020101202,0.00019506573],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000032899545,0.00043766148,0.0004086705,0.0010719002,0.00028746194,0.00016207482,0.0005672991,0.0009487786,0.00024974725],"category_scores_gemma":[0.00005973464,0.0005059111,0.0002615924,0.0015827081,0.00019637043,0.000009140966,0.0005878969,0.0002568838,0.00007532295],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024448417,0.00019807483,0.00013090736,0.000045875753,0.0005047218,0.000042733445,0.000026564752,0.000019881014,0.015401621,0.000861553,0.98093456,0.0015890042],"study_design_scores_gemma":[0.0006235413,0.00028793936,0.0000426335,0.000057047728,0.000103421524,0.000024214258,0.000110845416,0.000003351962,0.0042922725,0.000024299312,0.993914,0.00051645027],"about_ca_topic_score_codex":0.00030257524,"about_ca_topic_score_gemma":0.0019913458,"teacher_disagreement_score":0.021543289,"about_ca_system_score_codex":0.00010717445,"about_ca_system_score_gemma":0.000539324,"threshold_uncertainty_score":0.9997392},"labels":[],"label_agreement":null},{"id":"W7084603514","doi":"10.5281/zenodo.17264425","title":"QuadDarv1ne/Pacman_Complete: v1.0.0: The Ghosts Are Back (stable)","year":2025,"lang":"ru","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"QUAD Engineering (Canada)","funders":"","keywords":"Feature (linguistics); Action (physics); Key (lock); Sequence (biology)","score_opus":0.019866738409983525,"score_gpt":0.2301865594164551,"score_spread":0.2103198210064716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084603514","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013001109,0.0038234633,0.0041205706,0.008820301,0.0013732626,0.0024471635,0.0037751812,0.0005333315,0.96210563],"genre_scores_gemma":[0.5805389,0.010521227,0.0013065612,0.0026190311,0.0035038325,6.241129e-7,0.01763772,0.012130239,0.37174183],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967852,0.0005918215,0.00046492263,0.0011032606,0.00031209158,0.00074267277],"domain_scores_gemma":[0.99706227,0.000016608,0.00040102084,0.0016923713,0.0006480878,0.00017965824],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00051636767,0.00049590686,0.00040236753,0.00023471046,0.001800404,0.0010129169,0.0028839828,0.0008036684,0.033073742],"category_scores_gemma":[0.00044406945,0.00043891862,0.0001942797,0.00050418964,0.000615342,0.0000067793644,0.0054661366,0.00069357,0.011787878],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017648688,0.00023395778,0.00000806837,0.0002551086,0.0004103856,0.00001304554,0.00009493019,0.000017674483,0.07147132,0.0034745869,0.85883236,0.06501207],"study_design_scores_gemma":[0.0005693815,0.00035475485,0.00037337776,0.00015291557,0.00006661284,0.000049960996,0.00017551002,0.000042978892,0.0065539237,0.00017392193,0.99101657,0.0004700783],"about_ca_topic_score_codex":0.000047792342,"about_ca_topic_score_gemma":0.0000068786176,"teacher_disagreement_score":0.5903638,"about_ca_system_score_codex":0.00009107258,"about_ca_system_score_gemma":0.000029221526,"threshold_uncertainty_score":0.9998063},"labels":[],"label_agreement":null},{"id":"W7084605510","doi":"10.1109/lsens.2025.3617490","title":"In-Home Human Activity Recognition via Kinematics-Focused Multi-Modal Sensor Fusion and Spatio-temporal Neural Architecture","year":2025,"lang":"en","type":"article","venue":"IEEE Sensors Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Activity recognition; Sensor fusion; Convolutional neural network; Artificial neural network; Deep learning; Pattern recognition (psychology)","score_opus":0.01115414723915734,"score_gpt":0.24306338485872744,"score_spread":0.2319092376195701,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084605510","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934507,0.000023565186,0.0012888429,0.004421869,0.0004270784,0.00031835347,0.00003154773,0.000023186825,0.000014863098],"genre_scores_gemma":[0.995639,0.000019195833,0.0027330641,0.00117009,0.00017493808,0.000011719496,0.0000990073,0.000021412738,0.00013154041],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988255,0.00011687222,0.00023598108,0.00045268878,0.000080833874,0.0002881099],"domain_scores_gemma":[0.9995253,0.000013750891,0.0000975561,0.0002795638,0.00003325544,0.000050583483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010166086,0.00023069192,0.00022843739,0.00018088384,0.00009248778,0.00003170757,0.00011468875,0.00032599914,0.000008501915],"category_scores_gemma":[0.000021947497,0.00022360955,0.00006898411,0.0001397026,0.00013279781,0.0000050170433,0.000082601764,0.00024314703,0.0000033976553],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001469246,0.000064488275,0.0009637279,0.000043992124,0.000024756831,0.00001610445,0.000036373513,0.00011247577,0.9930608,0.0000010755476,0.00026365614,0.005265606],"study_design_scores_gemma":[0.001765563,0.00020217666,0.014618912,0.00003663906,0.00002680947,0.000028008002,0.00001417834,0.0013439673,0.9801896,0.00010063389,0.0012975557,0.00037593534],"about_ca_topic_score_codex":0.00011881302,"about_ca_topic_score_gemma":0.0003508698,"teacher_disagreement_score":0.013655184,"about_ca_system_score_codex":0.000019002111,"about_ca_system_score_gemma":0.000013455843,"threshold_uncertainty_score":0.91185325},"labels":[],"label_agreement":null},{"id":"W7084606188","doi":"10.48495/kd17d531k","title":"'Kate' [Joseph Soames] to M.E. O'Brien, 16th November 1891. IE TCD MS 9385/1259","year":2025,"lang":"en","type":"other","venue":"Digital Collections (East Carolina University)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Newspaper; Commission; Code (set theory); League; Penal code","score_opus":0.0046959873788663805,"score_gpt":0.18417527284989307,"score_spread":0.1794792854710267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084606188","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004223572,0.00019715434,0.0014440236,0.0004234537,0.0011280604,0.00061855104,0.0019121857,0.0001935638,0.98985946],"genre_scores_gemma":[0.038715906,0.00017111567,0.00027446763,0.00018959239,0.0006101827,0.000006516453,0.00055579166,0.00017152228,0.9593049],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99825144,0.000033970322,0.00020393253,0.0008722842,0.00015156335,0.00048682725],"domain_scores_gemma":[0.99874765,0.0000074874733,0.0001383492,0.00070989836,0.00018704619,0.00020959055],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000032811633,0.00045974914,0.00041483823,0.0011087712,0.00026748783,0.00014828927,0.0005650407,0.0010267717,0.00033795074],"category_scores_gemma":[0.00005479331,0.00054042175,0.00028279674,0.001590348,0.00019345056,0.000007996776,0.00066447415,0.00026568776,0.0001236081],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028493913,0.00028366657,0.00029677592,0.000057469766,0.0005721857,0.00006396167,0.000024031677,0.00003779463,0.015185914,0.0008767346,0.979988,0.0023285758],"study_design_scores_gemma":[0.0006882399,0.00036950014,0.000059586946,0.00005469172,0.00009435031,0.00002394738,0.0000703987,0.0000030954159,0.0038544426,0.000033496566,0.9942006,0.00054765947],"about_ca_topic_score_codex":0.00023455173,"about_ca_topic_score_gemma":0.001365633,"teacher_disagreement_score":0.034492336,"about_ca_system_score_codex":0.00012061578,"about_ca_system_score_gemma":0.0005319015,"threshold_uncertainty_score":0.9997047},"labels":[],"label_agreement":null},{"id":"W7084613534","doi":"10.6084/m9.figshare.30269095","title":"Additional file 1 of Clinical practice recommendations and expected outcomes with fluorescent light energy: a Delphi-like consensus","year":2025,"lang":"en","type":"article","venue":"Open MIND","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Clinical Practice; MEDLINE; Key (lock); Component (thermodynamics); Good practice","score_opus":0.024373976699732593,"score_gpt":0.33811742107205545,"score_spread":0.3137434443723229,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084613534","genre_codex":"dataset","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.30378276,0.0007743304,0.0003639821,0.04972078,0.0011655551,0.0017568934,0.5710915,0.000014380854,0.07132982],"genre_scores_gemma":[0.18844742,0.000633348,0.62687314,0.0032174129,0.00034795594,0.0005504711,0.15585995,0.00006032057,0.024009971],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.999186,0.00007070379,0.00029750375,0.00029042744,0.000050894345,0.000104483435],"domain_scores_gemma":[0.9991433,0.000258136,0.00016824427,0.00023728289,0.00015185867,0.00004120459],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008493392,0.00009597156,0.00018309029,0.00003427083,0.00005311515,0.000034771787,0.0001653264,0.00018695882,0.04729846],"category_scores_gemma":[0.0006661484,0.000076975026,0.000034499986,0.00008477254,0.00012414514,0.0000027551632,0.00026889227,0.00006960152,0.000006246845],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002599873,0.00018906436,0.00007570664,0.0000020262808,0.00018225714,0.0000036268113,0.0000075948005,1.8503734e-7,0.011023322,0.000046576704,0.92932373,0.058885936],"study_design_scores_gemma":[0.0005138134,0.00025888128,0.0010653987,0.000044035296,0.000032233067,0.000014768321,0.0001312699,0.0000069917974,0.017568346,0.000012381412,0.98025817,0.00009373813],"about_ca_topic_score_codex":0.000015277581,"about_ca_topic_score_gemma":0.00014789858,"teacher_disagreement_score":0.6265092,"about_ca_system_score_codex":0.0000036316553,"about_ca_system_score_gemma":0.00021895288,"threshold_uncertainty_score":0.95357245},"labels":[],"label_agreement":null},{"id":"W7084616905","doi":"10.64628/aam.m7urkw494","title":"Many autistic students are denied a full education — here’s what we need for inclusive schools","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; University of British Columbia","funders":"","keywords":"Inclusion (mineral); Autism; Special education; Qualitative research; Action (physics)","score_opus":0.006105811909026545,"score_gpt":0.28912066908195494,"score_spread":0.2830148571729284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084616905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.978131,0.0026669835,0.0060886075,0.010194674,0.0015061375,0.00093173166,0.000026049245,0.00003632492,0.0004184804],"genre_scores_gemma":[0.98771286,0.0011288604,0.002386853,0.0017264873,0.00021449504,0.0001850031,0.00017044393,0.000017485463,0.0064574936],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904376,0.000026758778,0.00021922296,0.000390841,0.000080331534,0.00023910019],"domain_scores_gemma":[0.9993264,0.000007867108,0.000091626825,0.00036936917,0.0001579312,0.000046789763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008854483,0.00016671643,0.00016955243,0.000083984145,0.00011092023,0.00014676352,0.00037851557,0.00036541306,0.000022230248],"category_scores_gemma":[0.00008641743,0.00015517112,0.000073446165,0.00012027356,0.000044173965,0.0000048895363,0.0003782562,0.00008721248,0.000013747756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002537639,0.00025725865,0.0012839044,0.00007110103,0.00013946599,7.271006e-7,0.000015605636,0.0000022146257,0.9506301,0.0023347933,0.015681013,0.029330049],"study_design_scores_gemma":[0.0025703355,0.0008468225,0.006205368,0.00027493527,0.00015860866,0.000014763342,0.004416125,0.00006365817,0.6183547,0.006890793,0.35956404,0.0006398611],"about_ca_topic_score_codex":0.000013482365,"about_ca_topic_score_gemma":0.00012963037,"teacher_disagreement_score":0.34388304,"about_ca_system_score_codex":0.000036035643,"about_ca_system_score_gemma":0.00024287376,"threshold_uncertainty_score":0.63276947},"labels":[],"label_agreement":null},{"id":"W7084747019","doi":"10.7910/dvn/hnk8gm","title":"Replication Data for: Enteric dysfunction and enteropathogens among hospitalized south Asian and sub-Saharan African children","year":2025,"lang":"en","type":"dataset","venue":"Harvard Dataverse","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"South asia; Feces; Replication (statistics); Missing data; Enteric virus; Pathogen; Polymerase chain reaction; Real-time polymerase chain reaction","score_opus":0.007949863328229934,"score_gpt":0.22131622747392887,"score_spread":0.21336636414569893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084747019","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.057970818,0.000040054965,0.0002560642,0.00002447916,0.00030112494,0.00074372225,0.9406374,0.000018563856,0.000007745581],"genre_scores_gemma":[0.0076254327,0.0050452845,0.00030434984,0.00010521331,0.00025206569,0.00006460138,0.9865302,0.000018543913,0.000054318072],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979155,0.000060344268,0.00030948772,0.0013558643,0.000089172725,0.00026965357],"domain_scores_gemma":[0.99622005,0.00000607994,0.00025424678,0.0033705109,0.00005405966,0.00009507645],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000238962,0.00033046273,0.00031904067,0.00012272316,0.00012463286,0.000107988366,0.0006850578,0.0006053511,0.00003757374],"category_scores_gemma":[0.00021543186,0.0003317388,0.000055063003,0.00007922154,0.00020694637,0.000012057465,0.0015569547,0.0001556472,0.000017252196],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020473539,0.000044081506,0.00046714046,0.00008730542,0.00017135554,0.0000016340787,0.000004231727,5.587114e-8,0.02235074,0.0000016127102,0.97406894,0.0025981583],"study_design_scores_gemma":[0.00086361833,0.00029173607,0.0068158396,0.00004225207,0.0002962305,0.000018271605,0.000015270809,0.000011856115,0.0021869235,0.0000054835114,0.9891344,0.0003181377],"about_ca_topic_score_codex":0.00007651679,"about_ca_topic_score_gemma":0.00013986499,"teacher_disagreement_score":0.050345384,"about_ca_system_score_codex":0.000013625147,"about_ca_system_score_gemma":0.000055836612,"threshold_uncertainty_score":0.99991345},"labels":[],"label_agreement":null},{"id":"W7084749175","doi":"10.7202/1120273ar","title":"Règlement des différends investisseur-État et droit international des changements climatiques : une synergie en devenir ?1","year":2024,"lang":"fr","type":"article","venue":"Revue québécoise de droit international","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Western europe; Environmental policy; Zea mays","score_opus":0.016095044054452615,"score_gpt":0.27872875900687805,"score_spread":0.26263371495242543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084749175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91912335,0.013029927,0.008876929,0.025587553,0.007232222,0.000407128,0.0013346841,0.00014630494,0.024261873],"genre_scores_gemma":[0.942101,0.02858524,0.009063441,0.000993536,0.0022160257,0.00013445421,0.0018905408,0.0001082555,0.0149075305],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974616,0.00013695566,0.0006550655,0.0008200845,0.00030812057,0.0006181747],"domain_scores_gemma":[0.99890715,0.00005953075,0.00017793209,0.00037246154,0.00027283307,0.00021007464],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005046988,0.000431748,0.00030362202,0.00030910366,0.00010746266,0.00033009658,0.0009022874,0.00059370877,0.00060993794],"category_scores_gemma":[0.00021522038,0.00052187114,0.00027215833,0.0002496468,0.00045342513,0.000049750714,0.0005073548,0.00039694336,0.00011248227],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002245989,0.0007416367,0.0027319714,0.00083398365,0.0023098774,0.0004369156,0.0017994819,0.00024698183,0.46041802,0.24408157,0.005588504,0.28058645],"study_design_scores_gemma":[0.0007198001,0.0005902865,0.0062600244,0.0013562255,0.00018520317,0.00068129145,0.00020528135,0.004585203,0.06722839,0.049319614,0.8680755,0.0007931627],"about_ca_topic_score_codex":0.0009554403,"about_ca_topic_score_gemma":0.0046496424,"teacher_disagreement_score":0.862487,"about_ca_system_score_codex":0.0007599525,"about_ca_system_score_gemma":0.0003553852,"threshold_uncertainty_score":0.9997233},"labels":[],"label_agreement":null},{"id":"W7084763255","doi":"10.48495/sx61dz27p","title":"Joseph Soames, Solicitor, to M.E. O'Brien, 22nd December 1893. IE TCD MS 9384/1220","year":2025,"lang":"en","type":"other","venue":"Digital Collections (East Carolina University)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Newspaper; Commission","score_opus":0.004824039037021359,"score_gpt":0.18939154813172754,"score_spread":0.18456750909470618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084763255","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0048977756,0.00025222122,0.0014253914,0.0002320974,0.001306923,0.0005915104,0.0016481569,0.00017292488,0.989473],"genre_scores_gemma":[0.03627351,0.0002456962,0.00029709016,0.00013411709,0.0006925526,0.000006908721,0.0005236956,0.00017252774,0.9616539],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99828535,0.000036993897,0.00020399388,0.00083210977,0.00015119973,0.0004903601],"domain_scores_gemma":[0.99876547,0.000008051543,0.00013309777,0.0006864902,0.00018293904,0.00022397182],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0000296298,0.0004542534,0.00041384832,0.001077802,0.0002777024,0.00015215045,0.0005526278,0.0010689708,0.00026700794],"category_scores_gemma":[0.000060261154,0.0005387248,0.00027450192,0.001485373,0.00018704946,0.00000776461,0.00062051235,0.00025701834,0.00009935542],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031720463,0.00021872566,0.00014796326,0.00004235284,0.00050566724,0.00006238959,0.000019739193,0.000025745812,0.009903705,0.00078029087,0.98593354,0.0020427],"study_design_scores_gemma":[0.0006579743,0.00033816625,0.00004093658,0.000053977576,0.00009415178,0.000037296006,0.00006173845,0.0000039338393,0.0039168643,0.000032453674,0.9942226,0.0005399022],"about_ca_topic_score_codex":0.0002983772,"about_ca_topic_score_gemma":0.0019077591,"teacher_disagreement_score":0.031375736,"about_ca_system_score_codex":0.000118704644,"about_ca_system_score_gemma":0.0005630009,"threshold_uncertainty_score":0.99970645},"labels":[],"label_agreement":null},{"id":"W7084769220","doi":"10.5281/zenodo.17275724","title":"Ground Truth for PaganTibet Ume models 1 & 2","year":2025,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"European Commission","keywords":"Ground truth; Horizon; Rest (music); Common ground","score_opus":0.02398519826465971,"score_gpt":0.2473403134839701,"score_spread":0.2233551152193104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084769220","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00069869315,0.00028352198,0.0022886174,0.00030169508,0.000435413,0.0006687811,0.99323916,0.000123817,0.001960269],"genre_scores_gemma":[0.0020744093,0.0012568157,0.00024191318,0.00019365315,0.00046544385,2.265158e-7,0.9944451,0.00049327733,0.0008292018],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99822694,0.0001373739,0.00030195198,0.00073283754,0.0001665329,0.0004343596],"domain_scores_gemma":[0.99835205,0.0000113695505,0.00015406526,0.00093454984,0.0004425093,0.00010546161],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003392523,0.0002709728,0.00025661432,0.0001961053,0.0009020714,0.00042800375,0.0014846039,0.00059335906,0.0007602243],"category_scores_gemma":[0.00037682123,0.0002860292,0.00012408893,0.00021260437,0.00016864372,0.000007146575,0.0018568392,0.00027666645,0.00016599004],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012078719,0.00008948713,1.2640176e-8,0.0001473711,0.00010495479,0.0000024195224,0.000007904919,0.00001273006,0.01734122,0.000358234,0.9718398,0.009975107],"study_design_scores_gemma":[0.00051994796,0.0005708295,0.000002333621,0.00003202703,0.00005573224,0.00003159036,0.000016274995,0.00004110031,0.0035769455,0.00030659724,0.9945471,0.00029952076],"about_ca_topic_score_codex":0.000015704281,"about_ca_topic_score_gemma":0.0000012904321,"teacher_disagreement_score":0.02270733,"about_ca_system_score_codex":0.00004384271,"about_ca_system_score_gemma":0.000015675405,"threshold_uncertainty_score":0.9999592},"labels":[],"label_agreement":null},{"id":"W7084903139","doi":"10.17632/jrypnv3g78.1","title":"Glucagon-induced PGC-1⍺4/PPARγ promotes hepatic lipid storage and macrosteatosis in fasting and MASLD","year":2025,"lang":"en","type":"dataset","venue":"Mendeley Data","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Clinical Research Institute","funders":"","keywords":"Lipidomics; Lipid metabolism; Lipid accumulation; Triglycerides blood; Fatty liver; Liver metabolism","score_opus":0.02008495042287099,"score_gpt":0.26901731286593616,"score_spread":0.24893236244306519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084903139","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19087975,0.0014534685,0.000010110972,0.0002923968,0.00030731427,0.00040834633,0.80662084,0.0000118728485,0.000015917343],"genre_scores_gemma":[0.026805539,0.0048005367,0.00041093543,0.0001655154,0.00024477814,0.000034406195,0.9674291,0.000020513695,0.00008869238],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977455,0.00010725209,0.00041676036,0.0011876279,0.00012037546,0.00042245325],"domain_scores_gemma":[0.99790627,0.000028438813,0.00017820713,0.0017616708,0.000035900674,0.00008949852],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003618417,0.00041491154,0.00046967244,0.00016283579,0.00009199121,0.00010787494,0.00086998567,0.0009153706,0.000014010459],"category_scores_gemma":[0.00029990796,0.00040249407,0.000028353536,0.00015422316,0.0001137498,0.0000071849586,0.00331567,0.00040021673,0.0000014573685],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008406386,0.00012687106,0.00030530302,0.00061584567,0.00014659454,0.000026772266,0.000011333427,3.2884844e-7,0.35541695,0.000003259548,0.6272735,0.015989149],"study_design_scores_gemma":[0.0008377337,0.00040945783,0.00023379154,0.00025158827,0.00012871757,0.00003954453,0.000032952077,0.00014131238,0.036257707,0.000015354408,0.9610493,0.000602514],"about_ca_topic_score_codex":0.00038995102,"about_ca_topic_score_gemma":0.0014821826,"teacher_disagreement_score":0.33377582,"about_ca_system_score_codex":0.00001818562,"about_ca_system_score_gemma":0.00014964954,"threshold_uncertainty_score":0.9998427},"labels":[],"label_agreement":null},{"id":"W7085008147","doi":"10.1594/pangaea.984649","title":"Organic and inorganic geochemical properties of sea ice cores in the nearshore zone of the southern Canadian Beaufort Sea","year":2025,"lang":"en","type":"other","venue":"Open MIND","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Horizon 2020","keywords":"Colored dissolved organic matter; Dissolved organic carbon; Transect; Organic matter; Sea ice; Seawater; Total organic carbon; Absorbance","score_opus":0.010687569915355482,"score_gpt":0.21595555096480654,"score_spread":0.20526798104945104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7085008147","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9817133,0.0017059485,9.595875e-7,0.00049908296,0.00007410412,0.0005862568,0.0004806428,5.5219743e-7,0.014939177],"genre_scores_gemma":[0.96723133,0.00023382247,0.000106175765,0.00009025438,0.00006220049,0.000007950953,0.000083569845,0.00004854283,0.03213616],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926984,0.00005882955,0.00017955418,0.00025476344,0.000072172814,0.00016483132],"domain_scores_gemma":[0.9993467,0.0000041172634,0.00011570215,0.0004695191,0.000035051,0.00002894873],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014699996,0.00014974707,0.00021996888,0.000050747083,0.000026596921,0.000022736645,0.0008097015,0.0005096126,0.0003336753],"category_scores_gemma":[0.000046603534,0.0000894674,0.000036052515,0.00012739982,0.00026290177,7.4187386e-7,0.0004326289,0.00015130946,0.000004071369],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034274315,0.000041051444,0.004003824,0.000055292057,0.00009602556,0.0000019401425,0.00020086142,1.4051484e-7,0.98387843,0.0000054795287,0.005674285,0.0060083983],"study_design_scores_gemma":[0.00027384819,0.00008144161,0.00067449006,0.00016179762,0.00005653688,0.00001110074,0.0003826933,0.0000023812195,0.7388968,0.000007504135,0.25928733,0.0001640877],"about_ca_topic_score_codex":0.03748044,"about_ca_topic_score_gemma":0.37241524,"teacher_disagreement_score":0.3349348,"about_ca_system_score_codex":0.000008933241,"about_ca_system_score_gemma":0.0005304384,"threshold_uncertainty_score":0.96892905},"labels":[],"label_agreement":null},{"id":"W7085063372","doi":"10.5281/zenodo.17106711","title":"Nares Strait - Hydrographic, Nutrient and Biogeochemical tracer Data (2006-2024)","year":2025,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Biogeochemical cycle; TRACER; Nutrient; Salinity; Principal component analysis; Water mass; Biogeochemistry","score_opus":0.01948509372213748,"score_gpt":0.24843887751831284,"score_spread":0.22895378379617537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7085063372","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0033130848,0.0011596082,0.00004703966,0.00052020134,0.00021973076,0.00035686733,0.99348724,0.000085810854,0.00081041123],"genre_scores_gemma":[0.0017514909,0.0042182184,0.0001036279,0.00013950393,0.00029558895,8.7850225e-8,0.99295986,0.00026202606,0.00026957426],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980595,0.00014535252,0.00028147947,0.00094269053,0.00019759049,0.00037339987],"domain_scores_gemma":[0.99804115,0.000007147062,0.00011973494,0.0014774769,0.00021261878,0.00014185537],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003129515,0.00026345576,0.00022586378,0.00022813134,0.00063618575,0.00041653492,0.001919782,0.0005746105,0.0015218231],"category_scores_gemma":[0.00034623418,0.00027149043,0.000053480482,0.0003114501,0.00037036932,0.00000743686,0.0052979775,0.0004077226,0.00009173625],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006871632,0.000121719335,4.806162e-7,0.00010690782,0.00010842061,0.0000058189153,0.000004823493,2.8182643e-7,0.04417355,0.0000397448,0.9464605,0.00890907],"study_design_scores_gemma":[0.0003713931,0.00033699078,0.0000101584355,0.000039257982,0.00006055997,0.00007578816,0.000024400146,0.0000074032077,0.005681965,0.00005228438,0.9930661,0.00027370476],"about_ca_topic_score_codex":0.000029906501,"about_ca_topic_score_gemma":0.0000039943866,"teacher_disagreement_score":0.046605628,"about_ca_system_score_codex":0.000019281197,"about_ca_system_score_gemma":0.000012637647,"threshold_uncertainty_score":0.9999737},"labels":[],"label_agreement":null},{"id":"W7085068977","doi":"10.11159/ijtan.2025.001","title":"Efficient CuO/ZnO/ZnAl Layered Double Hydroxide Photocatalyst for Methyl Orange Degradation","year":2025,"lang":"en","type":"article","venue":"International Journal of Theoretical and Applied Nanotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Methyl orange; Photocatalysis; Degradation (telecommunications); Sodium hydroxide; Reflectivity","score_opus":0.005473311589278349,"score_gpt":0.2543975310040949,"score_spread":0.24892421941481654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7085068977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9606744,0.0003344015,0.033284344,0.00441668,0.0005415835,0.00025153844,0.000026074124,0.000014399899,0.00045656797],"genre_scores_gemma":[0.9950185,0.00016736449,0.0041955574,0.00031937,0.00015744423,0.000026043639,0.0000348491,0.000011193977,0.000069714275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990109,0.00001635189,0.0004037206,0.000247963,0.00012962792,0.00019142189],"domain_scores_gemma":[0.9993308,0.000040326173,0.00019270836,0.00016262563,0.00022873505,0.000044804216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030157762,0.00014698721,0.00023407793,0.00022962032,0.000053791886,0.00003078329,0.00047334065,0.00042947594,0.000016731057],"category_scores_gemma":[0.00010090448,0.000119675504,0.00010756131,0.00010631978,0.0004582415,0.0000018570651,0.00021885049,0.00017609989,0.0000017172027],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012364526,0.00007799126,0.000016001448,0.0000068552617,0.00015118853,0.0000019172694,0.0000043868426,0.00005342567,0.7044204,0.28330564,0.00016993794,0.010555817],"study_design_scores_gemma":[0.0022041616,0.0002742553,0.000026226624,0.000019952884,0.00004824858,0.00006293206,0.000037447415,0.00027765112,0.9443616,0.033782057,0.018785004,0.000120410325],"about_ca_topic_score_codex":0.0000023056336,"about_ca_topic_score_gemma":0.0000034633306,"teacher_disagreement_score":0.24952358,"about_ca_system_score_codex":0.000022853095,"about_ca_system_score_gemma":0.000063987995,"threshold_uncertainty_score":0.48802254},"labels":[],"label_agreement":null},{"id":"W7094946294","doi":"10.6084/m9.figshare.30435189.v1","title":"Additional file 5 of Host miRNAs regulate Escherichia coli O157 mucosal colonization through host-mucosa-attached microbiota interactions in calves","year":2025,"lang":"","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of British Columbia; University of Alberta","funders":"","keywords":"Escherichia coli; Gene; Colonization; Host (biology); Bacteria; Gene expression; microRNA; Gene regulatory network","score_opus":0.013568684613559309,"score_gpt":0.25853067582241557,"score_spread":0.24496199120885626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7094946294","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02027296,0.0006821091,0.000004303104,0.0006536807,0.00031617365,0.0006007977,0.97572696,0.00002202695,0.0017210154],"genre_scores_gemma":[0.14995584,0.00008603075,0.0011722666,0.0003648699,0.00020506023,0.0004796861,0.84460807,0.00004130861,0.0030868456],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976628,0.00013818176,0.0007740729,0.0007945643,0.00012864725,0.0005017473],"domain_scores_gemma":[0.9981303,0.00023328995,0.00049200916,0.0006108306,0.00046046101,0.000073073046],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000036495338,0.0004372267,0.00047834884,0.0001850147,0.00015344383,0.00007857808,0.0005181267,0.0009234098,0.8298135],"category_scores_gemma":[0.0017552064,0.00050154596,0.00024156434,0.00079448585,0.00012943229,0.00001941639,0.00063223415,0.00043252128,0.00027577748],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000100295205,0.00023936777,0.000007067339,0.00016145504,0.00012115731,0.0000042400543,0.000025532227,0.0000065068425,0.34615162,0.00001291737,0.6528546,0.0003152021],"study_design_scores_gemma":[0.0005598694,0.00018974768,0.007095108,0.002037815,0.000030906667,0.00000776175,0.000060576378,0.0001394051,0.21878558,0.00002216767,0.77071184,0.0003591998],"about_ca_topic_score_codex":0.00003669096,"about_ca_topic_score_gemma":0.00045723954,"teacher_disagreement_score":0.8295377,"about_ca_system_score_codex":0.00010211793,"about_ca_system_score_gemma":0.0007989348,"threshold_uncertainty_score":0.99974364},"labels":[],"label_agreement":null},{"id":"W7094954484","doi":"10.6084/m9.figshare.30435189","title":"Additional file 5 of Host miRNAs regulate Escherichia coli O157 mucosal colonization through host-mucosa-attached microbiota interactions in calves","year":2025,"lang":"","type":"article","venue":"Figshare","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of British Columbia; University of Alberta","funders":"","keywords":"Escherichia coli; Gene; Colonization; Host (biology); Bacteria; Gene expression; microRNA; Gene regulatory network","score_opus":0.013568684613559309,"score_gpt":0.25853067582241557,"score_spread":0.24496199120885626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7094954484","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02027296,0.0006821091,0.000004303104,0.0006536807,0.00031617365,0.0006007977,0.97572696,0.00002202695,0.0017210154],"genre_scores_gemma":[0.14995584,0.00008603075,0.0011722666,0.0003648699,0.00020506023,0.0004796861,0.84460807,0.00004130861,0.0030868456],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976628,0.00013818176,0.0007740729,0.0007945643,0.00012864725,0.0005017473],"domain_scores_gemma":[0.9981303,0.00023328995,0.00049200916,0.0006108306,0.00046046101,0.000073073046],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000036495338,0.0004372267,0.00047834884,0.0001850147,0.00015344383,0.00007857808,0.0005181267,0.0009234098,0.8298135],"category_scores_gemma":[0.0017552064,0.00050154596,0.00024156434,0.00079448585,0.00012943229,0.00001941639,0.00063223415,0.00043252128,0.00027577748],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000100295205,0.00023936777,0.000007067339,0.00016145504,0.00012115731,0.0000042400543,0.000025532227,0.0000065068425,0.34615162,0.00001291737,0.6528546,0.0003152021],"study_design_scores_gemma":[0.0005598694,0.00018974768,0.007095108,0.002037815,0.000030906667,0.00000776175,0.000060576378,0.0001394051,0.21878558,0.00002216767,0.77071184,0.0003591998],"about_ca_topic_score_codex":0.00003669096,"about_ca_topic_score_gemma":0.00045723954,"teacher_disagreement_score":0.8295377,"about_ca_system_score_codex":0.00010211793,"about_ca_system_score_gemma":0.0007989348,"threshold_uncertainty_score":0.99974364},"labels":[],"label_agreement":null},{"id":"W7100374576","doi":"","title":"Supplemental Data Assembly and Channel Opening in a Bacterial Drug Efflux Machine","year":2013,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Periplasmic space; Bacterial outer membrane; Protein Data Bank (RCSB PDB); Binding site; Crystal structure; Protein structure; Docking (animal); Transmembrane protein; Transmembrane domain; Protein subunit","score_opus":0.012173838193729657,"score_gpt":0.24482498557550997,"score_spread":0.2326511473817803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7100374576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977978,0.00012214259,0.00006945541,0.0010667804,0.0001844989,0.0002811225,0.00011853038,0.000010380271,0.00034929338],"genre_scores_gemma":[0.9956642,0.00015658949,0.0017412687,0.00019116995,0.00018286209,0.000020128447,0.0016339872,0.000015612817,0.00039419098],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990475,0.00003229581,0.00018923826,0.00042896278,0.000051428004,0.00025054588],"domain_scores_gemma":[0.9994321,0.0000050381946,0.000038103393,0.00044898162,0.000017458142,0.00005830677],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014824835,0.00013788247,0.00013569833,0.00004402725,0.000036856698,0.00006850316,0.00036394308,0.00014517875,0.00035188225],"category_scores_gemma":[0.000021704047,0.000118844146,0.00001530895,0.000050041373,0.000053425323,0.000008418412,0.0011358164,0.000076559976,0.000016176182],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023243392,0.000033721924,0.0013889007,0.000005556165,0.000014566687,0.0000010564854,0.000011695911,3.0818433e-7,0.9915425,0.000025760843,0.004370838,0.0025818143],"study_design_scores_gemma":[0.0027706346,0.0004009731,0.020874962,0.0000149053585,0.000015317082,0.000053020758,0.00018082975,0.0014487781,0.9016014,0.00010509209,0.07200831,0.0005257853],"about_ca_topic_score_codex":0.00089174765,"about_ca_topic_score_gemma":0.0013706298,"teacher_disagreement_score":0.089941144,"about_ca_system_score_codex":0.0000052328937,"about_ca_system_score_gemma":0.000022797572,"threshold_uncertainty_score":0.48463237},"labels":[],"label_agreement":null},{"id":"W7100407405","doi":"","title":"PAR","year":2014,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Diffuser (optics); Context (archaeology); Work (physics)","score_opus":0.004031916544529885,"score_gpt":0.1990529933109025,"score_spread":0.19502107676637262,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7100407405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9764241,0.000034371074,0.0034693289,0.00044455944,0.00014499454,0.00003516706,0.000001044144,0.000018625358,0.019427836],"genre_scores_gemma":[0.9961523,0.000029528896,0.0019600291,0.0005267244,0.00021383449,0.0000027777473,0.000015557416,0.000006354222,0.0010928871],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996648,0.000011736033,0.000057707442,0.00013671839,0.000024413352,0.00010462606],"domain_scores_gemma":[0.99974304,0.0000012679766,0.000013247623,0.0001995524,0.000015723655,0.000027161592],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005491508,0.0000506378,0.000043867356,0.000010908472,0.000023044671,0.0000073351766,0.00009369823,0.00011743109,0.000047292793],"category_scores_gemma":[0.000021589469,0.00004147187,0.000024680634,0.000022822844,0.000036219433,2.067036e-7,0.00006048882,0.000023324204,0.00004359248],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005723219,0.0000084220765,0.0004936887,8.9969046e-7,0.0000046533373,6.925947e-8,6.74861e-7,7.543e-7,0.9865974,0.0013102443,0.0022066094,0.009370833],"study_design_scores_gemma":[0.000089928224,0.00012597995,0.0018996564,3.5279052e-7,0.0000013539899,0.0000028470406,0.0000013389143,0.0000139306885,0.5830129,0.00019938273,0.41460064,0.0000517209],"about_ca_topic_score_codex":0.0000031634545,"about_ca_topic_score_gemma":0.0000087908065,"teacher_disagreement_score":0.41239402,"about_ca_system_score_codex":8.0421916e-7,"about_ca_system_score_gemma":0.0000061140568,"threshold_uncertainty_score":0.16911738},"labels":[],"label_agreement":null},{"id":"W7100521369","doi":"","title":"MEETING REVIEW Prokaryotic Development: Emerging Insights","year":2016,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"MEDLINE; Key (lock); Pandemic","score_opus":0.008887466725194224,"score_gpt":0.22717314454934298,"score_spread":0.21828567782414876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7100521369","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.960284,0.023006944,0.0018833177,0.0034072667,0.0003528787,0.00042862305,0.0000020996945,0.00007872755,0.010556144],"genre_scores_gemma":[0.9767032,0.014791519,0.004067177,0.0011275277,0.00017397314,0.000028993263,0.000019168654,0.000022562437,0.0030658622],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991926,0.000024193614,0.00021924046,0.00028673987,0.00006965845,0.00020754304],"domain_scores_gemma":[0.99958026,0.0000039772376,0.00005968516,0.0002530269,0.000054312914,0.00004875972],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010805241,0.00012135387,0.00012002434,0.000028285674,0.000059293674,0.000006944621,0.00017374525,0.00012777516,0.00007917164],"category_scores_gemma":[0.00006986103,0.00007204975,0.000039740153,0.00006973239,0.00004236303,0.0000016391328,0.00016258213,0.000030494512,0.00006596315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000047187627,0.000016977498,0.00016320172,0.000060522667,0.00002032852,0.0000010988842,0.000004655821,4.435175e-8,0.94499165,0.0001412087,0.0015053123,0.053090263],"study_design_scores_gemma":[0.00012854899,0.00004277772,0.00024338554,0.00024164862,0.0000054604657,0.0000062498425,0.0000025456175,3.591083e-7,0.5842231,0.000031152624,0.4149539,0.00012089613],"about_ca_topic_score_codex":0.0000013071007,"about_ca_topic_score_gemma":0.000015985112,"teacher_disagreement_score":0.41344857,"about_ca_system_score_codex":0.000007746337,"about_ca_system_score_gemma":0.00005534029,"threshold_uncertainty_score":0.29381034},"labels":[],"label_agreement":null},{"id":"W7101104813","doi":"","title":"Transcript Well","year":2015,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"In silico; IBM; Genome; Workflow; Human Microbiome Project; Human disease; Human genome; Microbiome","score_opus":0.015310818260842298,"score_gpt":0.22586186016287313,"score_spread":0.21055104190203083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7101104813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94944286,0.00034197097,0.0015104078,0.00086669315,0.00038652954,0.0000763758,0.0000037652335,0.000029141313,0.047342237],"genre_scores_gemma":[0.99291044,0.000051680057,0.0016052821,0.00048954214,0.00018176288,0.000003602975,0.00002882505,0.000009169226,0.004719665],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995746,0.000011510531,0.00007721444,0.00015956377,0.00004534135,0.00013177874],"domain_scores_gemma":[0.9996771,5.4221096e-7,0.000013016154,0.0001950021,0.000038280134,0.00007606393],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065798915,0.00006770441,0.000056247,0.000016019703,0.000013410177,0.000009744916,0.00011988367,0.00015625845,0.000050475206],"category_scores_gemma":[0.000010964368,0.000056540135,0.000032010736,0.000037961152,0.00004218909,5.0108525e-7,0.000040764895,0.000033520435,0.000085377986],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029509747,0.000020949048,0.00020476004,0.0000010377388,0.000009086608,9.0062093e-7,0.00000613389,0.0000021527735,0.97964525,0.00045798958,0.017789634,0.0018325832],"study_design_scores_gemma":[0.00022327958,0.00018448778,0.00009390031,3.7647087e-7,0.0000024146857,0.0000075562803,0.000022696842,0.0000053525105,0.501214,0.00013287303,0.49805155,0.000061473],"about_ca_topic_score_codex":0.000011492543,"about_ca_topic_score_gemma":0.000025865604,"teacher_disagreement_score":0.48026192,"about_ca_system_score_codex":0.000002888879,"about_ca_system_score_gemma":0.00003425324,"threshold_uncertainty_score":0.23056397},"labels":[],"label_agreement":null},{"id":"W7101382276","doi":"10.1063/4.0001099","title":"Solution Characterization and Initial Crystallization Studies of TrbB from the F Plasmi","year":2025,"lang":"en","type":"article","venue":"Structural Dynamics","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Periplasmic space; Plasmid; Virulence; Bacterial conjugation; Secretion; Pilus; Bacteria; Transmembrane protein; DNA gyrase; Gene","score_opus":0.008092142316315096,"score_gpt":0.2591341347899918,"score_spread":0.2510419924736767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7101382276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934723,0.00029175947,0.0050912756,0.00052946934,0.00034056895,0.00010306151,0.0001435278,0.000006300417,0.00002174067],"genre_scores_gemma":[0.9980177,0.0005210184,0.00030028235,0.00009284641,0.000075330274,0.0000029566838,0.0009237344,0.0000044373514,0.000061661856],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995784,0.000026703685,0.00014087105,0.00014192681,0.000036825815,0.00007523428],"domain_scores_gemma":[0.9997109,0.000010100113,0.00007388479,0.00012560972,0.00007119208,0.000008313579],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000331477,0.00007717066,0.00009114218,0.000018819945,0.00007282151,0.000012056364,0.00008254682,0.00013301577,0.0000016722023],"category_scores_gemma":[0.00005084739,0.000055852506,0.000020904072,0.00006502425,0.00015898698,0.00000270778,0.000118497795,0.000041858282,9.241918e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005159933,0.0000023769003,0.0021181842,0.000011411018,0.000059602015,9.3779526e-8,0.000036904963,0.000006443379,0.97424495,0.0017591025,0.000016234535,0.021693071],"study_design_scores_gemma":[0.0012599645,0.00034563095,0.38127944,0.00007856384,0.00012363904,0.000007514534,0.0005289508,0.012537392,0.5912444,0.0078644045,0.0043635704,0.00036656638],"about_ca_topic_score_codex":0.00001729696,"about_ca_topic_score_gemma":0.00024814898,"teacher_disagreement_score":0.3830006,"about_ca_system_score_codex":0.000009963124,"about_ca_system_score_gemma":0.000021017537,"threshold_uncertainty_score":0.22775991},"labels":[],"label_agreement":null},{"id":"W7113894962","doi":"10.2139/ssrn.5894666","title":"Designing Minimal E. coli Genomes Using Variational Autoencoders","year":2025,"lang":"","type":"preprint","venue":"SSRN Electronic Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Cancer Research","funders":"","keywords":"Genome; Bacterial genome size; Limiting; Synthetic biology; Genomics; Key (lock); Minification","score_opus":0.01187882088955388,"score_gpt":0.2511697762447061,"score_spread":0.2392909553551522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7113894962","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4684257,0.050758857,0.47071162,0.002064034,0.00548646,0.0011952012,0.00025782344,0.0000517445,0.0010485797],"genre_scores_gemma":[0.86224467,0.09450181,0.034848575,0.00036004238,0.0035752086,0.00003032082,0.00030584374,0.00011543991,0.0040180725],"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.991874,0.00043050057,0.0012989726,0.0013197195,0.00043515806,0.004641654],"domain_scores_gemma":[0.997361,0.000038587972,0.001111854,0.000730474,0.00053827657,0.00021983155],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0023765585,0.00092385703,0.0008392023,0.00044076936,0.00079295575,0.0002957167,0.0014317819,0.002470669,0.00008174453],"category_scores_gemma":[0.00014923974,0.0010054258,0.0006853686,0.00031625948,0.00033684503,0.000010835238,0.0013330934,0.005280258,0.0000101590085],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010565913,0.0004336114,0.0009855789,0.0001575132,0.005275631,0.000018519419,0.00016955598,0.017309504,0.9287234,0.019007083,0.00017888204,0.02668416],"study_design_scores_gemma":[0.014625183,0.011832316,0.0011841757,0.00158127,0.0059545045,0.0077505764,0.007520792,0.06961937,0.34679574,0.36270663,0.15950191,0.01092754],"about_ca_topic_score_codex":0.000071787865,"about_ca_topic_score_gemma":0.00024174897,"teacher_disagreement_score":0.58192766,"about_ca_system_score_codex":0.0015931147,"about_ca_system_score_gemma":0.029124318,"threshold_uncertainty_score":0.9992396},"labels":[],"label_agreement":null},{"id":"W7117248934","doi":"10.64898/2025.12.22.696046","title":"YfgH is a transmembrane glycine-zipper containing lipoprotein that stabilizes excess cardiolipin and outer membrane proteins during envelope stress","year":2025,"lang":"","type":"article","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Universities Space Research Association","keywords":"Bacterial outer membrane; Biogenesis; Transmembrane protein; Cardiolipin; Membrane protein; Transmembrane domain; Membrane; Lipid bilayer; Cell envelope","score_opus":0.007240483366458026,"score_gpt":0.20233089948170105,"score_spread":0.19509041611524303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7117248934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98211205,0.011605899,0.0007446474,0.001712421,0.0009477336,0.0020746293,0.000637408,0.00012912959,0.000036065896],"genre_scores_gemma":[0.99012136,0.0067151627,0.0015006261,0.0004412909,0.00063962623,0.00033593745,0.0000018971363,0.00016824239,0.00007582507],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99472237,0.00028540211,0.001018114,0.002188171,0.00039024954,0.0013956712],"domain_scores_gemma":[0.9969758,0.00003095122,0.00040277262,0.0017298654,0.00046231394,0.00039829267],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00057957176,0.00115822,0.0012230643,0.00038652457,0.00054753036,0.00042388611,0.0008393434,0.0017299077,0.000080653],"category_scores_gemma":[0.00013619078,0.0012087135,0.0003174001,0.0007171909,0.0006854846,0.00004754667,0.0006694687,0.00072526233,0.0000100051175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090957776,0.00020083562,0.006626824,0.0015016682,0.0007890155,0.00006836177,0.000040497856,0.00000665572,0.9896292,0.00012027711,0.000026587131,0.000080461105],"study_design_scores_gemma":[0.003521717,0.00045577326,0.028693017,0.0007463017,0.0002818335,3.8416417e-7,0.00004556366,0.000039544153,0.93867886,8.3795607e-7,0.026298162,0.00123801],"about_ca_topic_score_codex":0.00016103603,"about_ca_topic_score_gemma":0.00004703802,"teacher_disagreement_score":0.050950382,"about_ca_system_score_codex":0.00012608871,"about_ca_system_score_gemma":0.0006722493,"threshold_uncertainty_score":0.9995661},"labels":[],"label_agreement":null},{"id":"W7117458062","doi":"10.1128/mra.01124-25","title":"Complete genome sequence of <i>Escherichia coli</i> EPI300","year":2025,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"","keywords":"Whole genome sequencing; Genome; Sequence (biology); Plasmid; DNA sequencing; Reference genome; Cancer genome sequencing; Sequence assembly; Genome project","score_opus":0.012703416144631923,"score_gpt":0.23807478112378652,"score_spread":0.2253713649791546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7117458062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920582,0.0010529492,0.00038184383,0.00047692342,0.0002913241,0.0003038869,0.0028469795,0.000019988185,0.0025678594],"genre_scores_gemma":[0.9778845,0.00032270292,0.0013893073,0.0039393744,0.00013139806,0.00004016581,0.010504224,0.000030036295,0.005758329],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986888,0.0000896874,0.00036582598,0.00045435774,0.000038034388,0.00036329756],"domain_scores_gemma":[0.9992008,0.000008374781,0.00015026951,0.0005000827,0.00010432385,0.000036123318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017574629,0.00020344714,0.00028432618,0.000085132924,0.00008983209,0.000010479641,0.0004953342,0.00038689547,0.000029539808],"category_scores_gemma":[0.000026321137,0.00019704954,0.000090863185,0.00021118722,0.00042806982,0.0000015558728,0.000372748,0.00012644411,0.000017151275],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013389601,0.00007302636,0.0016827006,0.000024342815,0.00013574972,0.000001544571,0.0000135611635,0.000012391365,0.99465877,0.00010368201,0.0028258446,0.00033447467],"study_design_scores_gemma":[0.00051202485,0.00028689945,0.00028676103,0.0000149993475,0.000020785767,0.0000067731166,0.00002934867,0.0000029067808,0.18208,0.000034688885,0.8165774,0.00014742048],"about_ca_topic_score_codex":0.000016366668,"about_ca_topic_score_gemma":0.00001322543,"teacher_disagreement_score":0.8137515,"about_ca_system_score_codex":0.00001945244,"about_ca_system_score_gemma":0.000089426525,"threshold_uncertainty_score":0.8035447},"labels":[],"label_agreement":null},{"id":"W7117462283","doi":"10.1002/pro.70411","title":"<i>Streptococcus pneumoniae</i> <scp>HtrA</scp> is a dynamic and monomeric virulence factor capable of forming larger oligomeric complexes","year":2025,"lang":"en","type":"article","venue":"Protein Science","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Biological and Environmental Research; U.S. Department of Energy; Oregon Health and Science University; Korea National Institute of Health; Canadian Light Source; Natural Sciences and Engineering Research Council of Canada; National Science Foundation; Canadian Institutes of Health Research; Cancer Center, University of Colorado; Office of Science; Anschutz Medical Campus, University of Colorado; National Institutes of Health","keywords":"PDZ domain; Proteases; Random hexamer; Serine protease; Virulence; Serine; Virulence factor; Monomer; Dimer; Cleavage (geology)","score_opus":0.006185496402664788,"score_gpt":0.24569683915236235,"score_spread":0.23951134274969757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7117462283","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965653,0.0011720465,0.0011087658,0.00013470982,0.000095256146,0.0004673586,0.000046039902,0.000015654867,0.00039487155],"genre_scores_gemma":[0.9973918,0.0002928102,0.001648233,0.00013371948,0.0000141857345,0.000063096115,0.0000040646746,0.000008619972,0.00044342375],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862236,0.000018021396,0.00025276054,0.0005533585,0.00014701478,0.00040647454],"domain_scores_gemma":[0.9992583,0.000012019722,0.00014061376,0.00040683354,0.000110938636,0.00007133777],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019023212,0.00017046543,0.00020853122,0.00013889404,0.00017099334,0.00005307093,0.0005012593,0.00013775904,0.0000054593766],"category_scores_gemma":[0.00012012583,0.00015337036,0.000047491852,0.00060445693,0.00085628027,0.000013608663,0.00039802055,0.000095652395,0.0000028413306],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004005874,0.000028830327,0.0016659062,0.00004296047,0.000009784943,4.253383e-7,0.000044863344,0.000002319555,0.99107134,0.00010606051,0.00002018836,0.0070033297],"study_design_scores_gemma":[0.00018074193,0.00021991489,0.0055147307,0.00003540151,0.000006668464,0.0000034737143,0.000073276075,0.00022870714,0.9862175,0.00040199474,0.0070351628,0.00008241342],"about_ca_topic_score_codex":0.00004117068,"about_ca_topic_score_gemma":0.000016115368,"teacher_disagreement_score":0.0070149745,"about_ca_system_score_codex":0.000017007864,"about_ca_system_score_gemma":0.00017528691,"threshold_uncertainty_score":0.62542623},"labels":[],"label_agreement":null},{"id":"W7118368327","doi":"10.1093/nar/gkaf1430","title":"Modular determinants of cleavage preference in GIY-YIG nucleases revealed by block-based DNA shuffling and directed evolution","year":2025,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"MaRS; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; Government of Ontario","keywords":"Homing endonuclease; Nuclease; Cleavage (geology); DNA shuffling; Shuffling; DNA; Endonuclease; Directed evolution","score_opus":0.023302325728254396,"score_gpt":0.30219589821432274,"score_spread":0.27889357248606833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7118368327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99808794,0.0009966602,0.000048638467,0.00014812892,0.000047659807,0.00030345292,0.00004273693,0.000018671708,0.00030611205],"genre_scores_gemma":[0.99880904,0.00039728387,0.0004372327,0.000028643844,0.00002464154,0.000022026883,0.00002570375,0.000017011196,0.00023844455],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984501,0.0002062504,0.00029548278,0.00046884798,0.00019053844,0.0003887763],"domain_scores_gemma":[0.99926096,0.00003541183,0.00005756511,0.00042039872,0.00016495718,0.000060725866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004967839,0.00013865046,0.00022595531,0.00023757922,0.00009867626,0.000024450717,0.0003139786,0.00040971144,0.0000097185475],"category_scores_gemma":[0.00036766133,0.00013654788,0.000038337817,0.00042655904,0.0003527961,0.0000040308046,0.0003076486,0.00023792784,0.0000021530275],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022693342,0.00011562639,0.030394444,0.00008324905,0.000012888234,0.0000026508894,0.000012382933,0.0000037447674,0.96310025,0.00003196115,0.00042669693,0.0055891857],"study_design_scores_gemma":[0.00089051604,0.00047396074,0.1062818,0.00013918093,0.000008467441,0.000001939162,0.000060422124,0.0015291936,0.887293,0.00017731963,0.0029941031,0.00015010781],"about_ca_topic_score_codex":0.0001633307,"about_ca_topic_score_gemma":0.00015509126,"teacher_disagreement_score":0.07588736,"about_ca_system_score_codex":0.00003937968,"about_ca_system_score_gemma":0.00015038872,"threshold_uncertainty_score":0.55682606},"labels":[],"label_agreement":null},{"id":"W7124467084","doi":"10.1093/nar/gkaf1520","title":"Machine learning reveals sequence and methylation determinants of SaCas9–PAM interactions in bacteria","year":2025,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Plasmid; Methylation; Escherichia coli; Cas9; DNA methylation; DNA; Bacteria; Nucleic acid sequence; CpG site","score_opus":0.04474261532060859,"score_gpt":0.3800703551797636,"score_spread":0.33532773985915504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7124467084","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998485,0.00037281812,0.00005121279,0.00022448102,0.00007078258,0.00015411424,0.000012097476,0.0000057518905,0.0006237179],"genre_scores_gemma":[0.99730325,0.00090243964,0.00086776464,0.00001867444,0.00002774673,0.000013165687,0.000023408476,0.000009041254,0.000834517],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989665,0.00020653324,0.00023314242,0.00027382112,0.000095164,0.0002248459],"domain_scores_gemma":[0.9995414,0.00003828051,0.00004936928,0.00021880525,0.00012015154,0.000031972853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063094316,0.00008253299,0.00014929385,0.00023733417,0.000075656535,0.000021802434,0.00016891948,0.00016623993,0.00003052521],"category_scores_gemma":[0.00036244738,0.00007944145,0.000024922947,0.00029499727,0.00019126064,0.000005078873,0.00030745406,0.00029551348,0.00000277949],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007688372,0.000025285422,0.054880366,0.000032166074,0.000009407185,0.0000017873036,0.00002781886,0.0000024749759,0.91795224,0.00009907452,0.000030540396,0.026861941],"study_design_scores_gemma":[0.0004541115,0.00033639182,0.10080731,0.00009060841,0.00000567914,0.000010578347,0.00009803775,0.0008845602,0.87764305,0.0006284061,0.018925231,0.000116036616],"about_ca_topic_score_codex":0.00014140649,"about_ca_topic_score_gemma":0.0002493575,"teacher_disagreement_score":0.04592694,"about_ca_system_score_codex":0.000021488575,"about_ca_system_score_gemma":0.00005742247,"threshold_uncertainty_score":0.32395282},"labels":[],"label_agreement":null},{"id":"W7126383642","doi":"10.21428/594757db.87d49597","title":"Deep learning prediction of bacterial genetic engineering using a hybrid CNN-transformer approach","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Cas9; Modular design; Deep learning; CRISPR; Genetic algorithm; Training set","score_opus":0.005580634085677447,"score_gpt":0.19497289497127046,"score_spread":0.18939226088559302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7126383642","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85756373,0.00026938104,0.1408356,0.000011554021,0.00028471882,0.0001399965,0.000008572184,0.00002340784,0.0008630617],"genre_scores_gemma":[0.9849436,0.00016442509,0.014436061,0.00001601672,0.00014382366,0.00000805615,0.000109155095,0.0000151097975,0.00016372332],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99920636,0.000020863372,0.0002491295,0.00026395862,0.000057882105,0.0002017741],"domain_scores_gemma":[0.99968237,0.0000033236286,0.0000483474,0.00018389261,0.0000527782,0.000029303063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007461775,0.00013505231,0.00015423111,0.00009148918,0.000042895837,0.000014901602,0.00012815815,0.00020698558,0.000027664077],"category_scores_gemma":[0.000024803632,0.00013129614,0.000075310425,0.00011088745,0.000049014146,0.0000021155515,0.000058214602,0.00009804157,7.011005e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004830493,0.000033395638,0.00054619997,0.000044246877,0.000064614294,3.3983972e-7,0.000007307905,0.0035216385,0.9920032,0.00006560965,0.000022699254,0.0036424247],"study_design_scores_gemma":[0.00051089074,0.0001937473,0.002077125,0.0000141815735,0.000045525623,0.000017419845,0.0000228493,0.026731722,0.96112835,0.000016201075,0.009110344,0.00013165317],"about_ca_topic_score_codex":0.000015231075,"about_ca_topic_score_gemma":0.0000021305732,"teacher_disagreement_score":0.12737992,"about_ca_system_score_codex":0.000011096846,"about_ca_system_score_gemma":0.000043674503,"threshold_uncertainty_score":0.5354101},"labels":[],"label_agreement":null},{"id":"W7132046505","doi":"","title":"The structure of the polysaccharide part of the LPS from Serratia marcescens serotype 019, including linkage region to the core and the residue at the non-reducing end.","year":2003,"lang":"en","type":"article","venue":"NPARC","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Serratia marcescens; Residue (chemistry); Polysaccharide; Serotype; Enterobacteriaceae; Bacteria; Linkage (software); Lipopolysaccharide","score_opus":0.011870605560613373,"score_gpt":0.2228432658967015,"score_spread":0.21097266033608814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7132046505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9838699,0.0007020523,0.000015236246,0.013930302,0.000522171,0.00057582464,0.0000765262,0.0000037523025,0.00030424527],"genre_scores_gemma":[0.9978937,0.00049010647,0.00006838784,0.00076742563,0.00021899391,0.000010316252,0.000006828163,0.00001842245,0.00052585045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998703,0.00029320698,0.00028655594,0.000288375,0.00017971864,0.00024917023],"domain_scores_gemma":[0.9982608,0.00011200606,0.0002641445,0.0012553303,0.00007828096,0.00002944216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039707316,0.00018052966,0.00017491943,0.000010455848,0.0007013829,0.000038089584,0.0009004982,0.00024361617,0.000024859866],"category_scores_gemma":[0.0002573877,0.00006128167,0.00011430038,0.00017433894,0.0007166313,0.0000022399665,0.0008060688,0.0002958909,7.7918e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013351822,0.000006232076,0.0014709259,0.000006194588,0.00006554169,2.2106462e-7,0.00045246855,0.000026920185,0.99280494,0.00068920647,0.0032906348,0.0010531958],"study_design_scores_gemma":[0.00033915983,0.0000662048,0.008210126,0.000039167302,0.00006039237,0.000016898914,0.00036170168,0.000038845043,0.96303564,0.00176133,0.025974536,0.000095976044],"about_ca_topic_score_codex":0.0001945944,"about_ca_topic_score_gemma":0.0019151521,"teacher_disagreement_score":0.029769279,"about_ca_system_score_codex":0.0000112824755,"about_ca_system_score_gemma":0.0000837426,"threshold_uncertainty_score":0.5394541},"labels":[],"label_agreement":null},{"id":"W7132361219","doi":"","title":"Expression purification, and biochemical characterization of WbpP, a new UDP-GlcNac C4 epimerase from Pseudomonas aeruginosa serotype 06","year":2000,"lang":"en","type":"article","venue":"NPARC","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pseudomonas aeruginosa; Serotype; Pseudomonadales; Pseudomonadaceae; Enzyme; Bacteria","score_opus":0.006426442263504019,"score_gpt":0.20903859127986033,"score_spread":0.2026121490163563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7132361219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982606,0.00019445855,0.00032242193,0.00064614747,0.000057098176,0.00015721958,0.000080967366,0.00001607483,0.00026501538],"genre_scores_gemma":[0.9933809,0.00095044717,0.0037629704,0.000111411246,0.00025660257,0.000009755618,0.00088024186,0.000016598799,0.00063105254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991393,0.000032807875,0.00023412245,0.00035650513,0.00008243921,0.00015480745],"domain_scores_gemma":[0.9994229,0.0000053912586,0.0000887999,0.00034500833,0.000047593636,0.00009030199],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004683273,0.00013895186,0.00015454477,0.000030333496,0.000039189115,0.00001668521,0.00014925239,0.00033818174,0.00042913662],"category_scores_gemma":[0.00001858379,0.00013085302,0.000039302693,0.000076386124,0.00009635782,0.0000044477297,0.00006537129,0.00007332362,0.000015933025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000118267504,0.000051702544,0.0005909942,0.000006708232,0.000015971353,5.5782294e-7,0.000027041977,2.818312e-7,0.9803489,0.00003176983,0.0011009324,0.017706892],"study_design_scores_gemma":[0.0004308875,0.00010500596,0.007591982,0.000018247021,0.000015409596,0.0000044826766,0.0000047481053,0.000018937071,0.9589687,0.00043243897,0.032268025,0.00014111321],"about_ca_topic_score_codex":0.000020182542,"about_ca_topic_score_gemma":0.000002081396,"teacher_disagreement_score":0.031167094,"about_ca_system_score_codex":0.000004377774,"about_ca_system_score_gemma":0.00004693062,"threshold_uncertainty_score":0.53360313},"labels":[],"label_agreement":null},{"id":"W7133007598","doi":"","title":"Characterization of Slam-mediated Surface Lipoprotein Translocation across the Bacterial Outer Membrane","year":2019,"lang":"","type":"dissertation","venue":"TSpace","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Bacterial outer membrane; Periplasmic space; Spheroplast; Membrane protein; Porin; Vesicle; Transmembrane protein; Chromosomal translocation; Complementation","score_opus":0.008346697955953828,"score_gpt":0.26934687444172606,"score_spread":0.26100017648577223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7133007598","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992048,0.0005418795,0.00038966397,0.0011527762,0.0032412647,0.0019200984,0.0005341383,0.000025163636,0.000146982],"genre_scores_gemma":[0.968216,0.004850802,0.00011406737,0.00008576706,0.00063559867,0.00005042283,0.020051355,0.00012467324,0.005871308],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965878,0.0002878557,0.0010335364,0.0010183137,0.0003796735,0.0006927967],"domain_scores_gemma":[0.99678016,0.00003254425,0.0012336993,0.001284735,0.00057132955,0.00009753212],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00053873577,0.00074340275,0.00081897044,0.00006629803,0.0002113228,0.00012106301,0.0008593487,0.002484436,0.0002781451],"category_scores_gemma":[0.00010288962,0.00062565977,0.00034307124,0.00036576553,0.0003020054,0.000012153667,0.00015201642,0.0005066691,0.00008057103],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014184449,0.00015313676,0.000030364337,0.00036462452,0.00027860547,0.000001281423,0.003412095,0.00002346204,0.98675805,0.000019464955,0.00001822709,0.00752226],"study_design_scores_gemma":[0.0014296112,0.00071486697,0.0018751054,0.00016959348,0.00012758006,0.000008778738,0.0014211672,0.00018206022,0.97293824,0.0000027524493,0.020487785,0.0006424606],"about_ca_topic_score_codex":0.00032999422,"about_ca_topic_score_gemma":0.0004154607,"teacher_disagreement_score":0.023832027,"about_ca_system_score_codex":0.00003433482,"about_ca_system_score_gemma":0.00039329162,"threshold_uncertainty_score":0.9996195},"labels":[],"label_agreement":null},{"id":"W755297217","doi":"10.1096/fasebj.20.5.lb58-c","title":"Insights into the mechanism of the teichoic acid polymerase from Bacillus subtilis and related enzymes","year":2006,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research","keywords":"Bacillus subtilis; Teichoic acid; Biochemistry; Complementation; Protein-fragment complementation assay; Biology; Enzyme; Amino acid; Histidine; Peptide sequence; Gene; Mutant; Genetics; Bacteria; Peptidoglycan","score_opus":0.003985838238350414,"score_gpt":0.1845074851488758,"score_spread":0.18052164691052539,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W755297217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98906696,0.008496994,0.000057302484,0.0017162805,0.00036640008,0.00009771477,0.000013176373,0.0000045151087,0.00018064836],"genre_scores_gemma":[0.99856216,0.00065517705,0.000058884907,0.00017481852,0.00026893045,0.0000023239536,0.0000111285535,0.000012137487,0.00025442895],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917763,0.0001482338,0.00025053413,0.00015203888,0.000118930184,0.00015260738],"domain_scores_gemma":[0.99931943,0.000017741708,0.00019054954,0.00038953597,0.000049430753,0.000033283028],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001474399,0.00013105157,0.00011731326,0.000023159646,0.00030661726,0.00003083334,0.00043821722,0.00020472195,0.00003136469],"category_scores_gemma":[0.00003140436,0.00005812711,0.00009661613,0.00009353441,0.0003068975,0.000002815487,0.00021880462,0.0002569015,0.0000020532957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003572362,0.000017697992,0.00010832003,9.877944e-7,0.000063730105,0.0000022136094,0.0001411862,0.0000031273878,0.9972134,0.0011076458,0.00014721071,0.0011587125],"study_design_scores_gemma":[0.00037331705,0.000108388325,0.0023475443,0.000008813385,0.000051439543,0.00007692288,0.00014974689,0.000024025241,0.98548746,0.009246161,0.0020422242,0.000083941086],"about_ca_topic_score_codex":0.00022471388,"about_ca_topic_score_gemma":0.00021244338,"teacher_disagreement_score":0.011725968,"about_ca_system_score_codex":0.00000733424,"about_ca_system_score_gemma":0.000053017244,"threshold_uncertainty_score":0.23703548},"labels":[],"label_agreement":null},{"id":"W79114544","doi":"10.1007/978-0-387-78885-2_6","title":"Two-Component Signaling and Gram Negative Envelope Stress Response Systems","year":2008,"lang":"en","type":"review","venue":"Advances in experimental medicine and biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Periplasmic space; Cytoplasm; Cell envelope; Bacterial outer membrane; Biogenesis; Cell biology; Biophysics; Chemistry; Biochemistry; Biology; Escherichia coli","score_opus":0.03278893144078381,"score_gpt":0.36542379823351795,"score_spread":0.33263486679273413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W79114544","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.034660332,0.96404237,0.000012056959,0.000040624116,0.00057427195,0.0005295923,0.000043879772,0.000011471833,0.00008541463],"genre_scores_gemma":[0.03998516,0.9588692,0.00026252854,0.00006276034,0.00040522387,0.00012556634,0.00023547327,0.00002834349,0.000025752232],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979489,0.00037581837,0.000560776,0.0007228007,0.000058395213,0.0003333233],"domain_scores_gemma":[0.9992515,0.000125554,0.0002552528,0.00024818076,0.000025272835,0.000094280105],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00017348779,0.0004454208,0.001119619,0.00017860765,0.00007989688,0.000008826635,0.00020211135,0.00054650946,0.0000053602207],"category_scores_gemma":[0.000082953105,0.00031422585,0.00006451782,0.00012179761,0.00091818126,0.000005237543,0.00028657468,0.00024037047,0.0000012016753],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082734704,0.00020108551,0.00015340216,0.0014868279,0.00022304936,0.000078323974,0.00033095383,0.000003117952,0.33702615,0.00055713847,0.000078193894,0.65903443],"study_design_scores_gemma":[0.0010277369,0.0020675394,0.0000063939583,0.0019016861,0.000039920564,0.00040099057,0.00058446673,0.0000022629656,0.012623144,0.00002825681,0.9808909,0.00042668585],"about_ca_topic_score_codex":0.00006984963,"about_ca_topic_score_gemma":0.00001432252,"teacher_disagreement_score":0.9808127,"about_ca_system_score_codex":0.000030224592,"about_ca_system_score_gemma":0.00005731744,"threshold_uncertainty_score":0.999931},"labels":[],"label_agreement":null},{"id":"W870259885","doi":"10.1128/9781555817732.ch5","title":"Partition Systems of Bacterial Plasmids","year":2014,"lang":"en","type":"book-chapter","venue":"ASM Press eBooks","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Plasmid; Extrachromosomal DNA; Biology; Origin of replication; Cell biology; Cell division; Bacillus subtilis; Escherichia coli; Bacterial cell structure; Genetics; DNA replication; Cell; Gene; Bacteria","score_opus":0.015488514352934357,"score_gpt":0.21054511358887368,"score_spread":0.19505659923593932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W870259885","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.031321455,0.0011758626,0.00032960472,0.00001594149,0.0030859965,0.0007741657,0.00054504874,0.00005798833,0.9626939],"genre_scores_gemma":[0.39739716,0.00040315976,0.00014638805,0.000034333603,0.0019611423,0.000046166842,0.0008649752,0.00011837815,0.5990283],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99884045,0.000026761794,0.000397756,0.00040563787,0.0001269041,0.0002025122],"domain_scores_gemma":[0.9989046,0.0000071461654,0.00033284872,0.0005924076,0.0001040225,0.000058986563],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009822212,0.0002863639,0.00037806953,0.000046006964,0.0000306486,0.000025560212,0.00027182247,0.0012081902,0.000028671158],"category_scores_gemma":[0.000010974678,0.0002776168,0.00014119009,0.0000021014462,0.00019627088,5.697616e-7,0.00021560426,0.00015000194,0.00000931913],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001636296,0.000009843537,0.0000012036868,0.00014739495,0.00019457578,0.000002500042,0.000008033771,0.0000053477856,0.90583503,0.08558165,0.0039586606,0.004092136],"study_design_scores_gemma":[0.00026091523,0.00034346394,0.000002580906,0.000066152345,0.000054344684,0.0000099312365,6.384115e-7,0.0000044203816,0.30642036,0.00022761393,0.6923849,0.00022469803],"about_ca_topic_score_codex":0.00003322921,"about_ca_topic_score_gemma":0.000017654473,"teacher_disagreement_score":0.6884262,"about_ca_system_score_codex":0.000007632222,"about_ca_system_score_gemma":0.000048309677,"threshold_uncertainty_score":0.9999676},"labels":[],"label_agreement":null},{"id":"W87112728","doi":"10.1096/fasebj.27.1_supplement.769.2","title":"Determination of VraR Binding Activity on fmtA Promoter","year":2013,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"York University","funders":"","keywords":"Footprinting; Binding site; Transcription factor; Penicillin binding proteins; Transcription (linguistics); Electrophoretic mobility shift assay; Chemistry; Molecular biology; Peptidoglycan; Promoter; Cell biology; Biology; Biochemistry; Gene expression; Gene; Bacterial protein","score_opus":0.011911103676547737,"score_gpt":0.2353853283311791,"score_spread":0.22347422465463135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W87112728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839944,0.000024465426,0.0004757072,0.0005814966,0.0001719324,0.00010408953,0.0000042408283,0.0000029297573,0.00023568481],"genre_scores_gemma":[0.99901813,0.00006426107,0.0004256168,0.00005744699,0.00019017301,0.0000033861415,0.0000034304173,0.000007788711,0.00022977885],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995355,0.000053529864,0.00011232852,0.00009239916,0.000076510136,0.0001297506],"domain_scores_gemma":[0.99960065,0.000006415725,0.00012658002,0.0001785576,0.000056435816,0.000031388237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015789518,0.00007308474,0.000072959345,0.00003664183,0.000078438956,0.000027564714,0.00018455097,0.00011833227,0.000050895796],"category_scores_gemma":[0.000029975286,0.00004556046,0.000054011445,0.00004035782,0.00006687882,0.0000031579543,0.000058892485,0.00013553818,0.000016993208],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025436208,0.000030380601,0.0001328245,0.000002279404,0.000011514086,6.573338e-7,0.000012606733,0.0000012153708,0.96036506,0.000011734184,0.00013287754,0.039273445],"study_design_scores_gemma":[0.00018176294,0.00044831776,0.0023813327,0.00000967832,0.000007674578,0.0000605597,0.00001417513,0.0000607326,0.9959512,0.0001599892,0.0006657718,0.000058852387],"about_ca_topic_score_codex":0.000005103786,"about_ca_topic_score_gemma":0.000002196743,"teacher_disagreement_score":0.039214592,"about_ca_system_score_codex":0.0000073140927,"about_ca_system_score_gemma":0.000023347731,"threshold_uncertainty_score":0.18579017},"labels":[],"label_agreement":null},{"id":"W893640510","doi":"10.1128/microbiolspec.mdna3-0002-2014","title":"Transposons Tn <i>10</i> and Tn <i>5</i>","year":2015,"lang":"en","type":"review","venue":"Microbiology Spectrum","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Tn10; Transposable element; Transposition (logic); Transposase; Biology; Genetics; Gene; Regulation of gene expression; Computational biology; Mutant; Computer science","score_opus":0.017108720239225304,"score_gpt":0.2620477004443359,"score_spread":0.2449389802051106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W893640510","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005194275,0.99652183,0.000018792522,0.00028608638,0.0005608037,0.000517092,0.00079852686,0.00004535436,0.0007321081],"genre_scores_gemma":[0.00008766669,0.9937983,0.0002563542,0.00019033252,0.0005724245,0.000044440436,0.0025343294,0.000090381116,0.0024257596],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976118,0.00018146508,0.00051715557,0.0010145408,0.000038172828,0.0006368196],"domain_scores_gemma":[0.99884534,0.000013172954,0.00023579455,0.0007132357,0.0000419569,0.00015051183],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00023403847,0.0006561794,0.0013776007,0.00013770087,0.000088531335,0.0000319712,0.0005410185,0.0021573897,0.00009048237],"category_scores_gemma":[0.000018688392,0.0005462386,0.0003355537,0.0001660807,0.0004908478,0.0000016221156,0.00035274526,0.0004189738,0.00015628492],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012379987,0.00020306125,0.000008697975,0.002835722,0.0010316035,0.000055039825,0.000021541995,2.1904283e-7,0.27023977,0.0003517813,0.065442115,0.6596866],"study_design_scores_gemma":[0.00034424954,0.00055503874,6.07809e-7,0.00024144152,0.0003408334,0.0008466445,0.0000034474767,7.012749e-8,0.0051410636,0.000053301606,0.9918703,0.0006029993],"about_ca_topic_score_codex":0.000009298644,"about_ca_topic_score_gemma":0.00007893339,"teacher_disagreement_score":0.9264282,"about_ca_system_score_codex":0.00003158409,"about_ca_system_score_gemma":0.00030010552,"threshold_uncertainty_score":0.99969894},"labels":[],"label_agreement":null},{"id":"W95190332","doi":"10.1007/978-0-387-26575-9_105","title":"Preliminary NMR Analysis of ProP440–500 the C-Terminal Cytoplasmic Domain of Bacterial Osmosensory Protein ProP","year":2010,"lang":"en","type":"book-chapter","venue":"","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Terminal (telecommunication); Cytoplasm; Domain (mathematical analysis); Chemistry; Computational biology; Biology; Computer science; Biochemistry; Mathematics; Mathematical analysis; Telecommunications","score_opus":0.007691466237193807,"score_gpt":0.20898444462478172,"score_spread":0.20129297838758792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W95190332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9755828,0.0002647364,0.00008892696,0.00019058984,0.00025945998,0.0013622143,0.00042113414,0.000018355506,0.021811828],"genre_scores_gemma":[0.8427426,0.0002906313,0.0041955737,0.00006143832,0.00068747584,0.00008880685,0.0012259261,0.00012398307,0.15058357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979812,0.000055224315,0.00077727967,0.00064409367,0.0002483388,0.0002938537],"domain_scores_gemma":[0.997723,0.00001416661,0.0007440193,0.0012315684,0.00022373705,0.00006355163],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00026502754,0.00046366092,0.00080529536,0.00025613187,0.00006668865,0.000017768476,0.00067167985,0.0017355386,0.0005504598],"category_scores_gemma":[0.000028325056,0.0003148441,0.0005559029,0.000089723275,0.00086622604,0.000002044782,0.00045201447,0.00044167382,0.0000063664575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081777386,0.00007045175,0.000012259003,0.00009332324,0.001259759,0.000009992157,0.000022740005,0.0000017516039,0.9926654,0.0025086033,0.00011172946,0.0024261794],"study_design_scores_gemma":[0.00045163915,0.0019643852,0.00018238871,0.00005578286,0.0011828453,0.00004631803,0.000015463625,0.000008244535,0.889527,0.0008729324,0.10525356,0.00043941883],"about_ca_topic_score_codex":0.000019765366,"about_ca_topic_score_gemma":0.00014314501,"teacher_disagreement_score":0.13284016,"about_ca_system_score_codex":0.0000114605,"about_ca_system_score_gemma":0.00023271538,"threshold_uncertainty_score":0.9999304},"labels":[],"label_agreement":null},{"id":"W971493459","doi":"10.1016/j.bmcl.2015.07.072","title":"The inhibition of type I bacterial signal peptidase: Biological consequences and therapeutic potential","year":2015,"lang":"en","type":"review","venue":"Bioorganic & Medicinal Chemistry Letters","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Prokaryote; Signal peptidase; Biology; Biochemistry; Antibacterial agent; Function (biology); Chemistry; Signal peptide; Antibiotics; Cell biology; Peptide sequence; Gene","score_opus":0.029655227285496178,"score_gpt":0.2721371999005039,"score_spread":0.2424819726150077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W971493459","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.109093875,0.8896183,0.000012909808,0.0005348047,0.00036801744,0.00026514253,0.00007253442,0.000014407088,0.000020022977],"genre_scores_gemma":[0.06298204,0.9351293,0.00003457917,0.000101989834,0.001180274,0.000014394416,0.00049685175,0.000032254946,0.000028358727],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.998323,0.00013273222,0.00052508165,0.000499227,0.00019931348,0.0003206007],"domain_scores_gemma":[0.9989951,0.00002762238,0.00039379348,0.00036376296,0.00010413547,0.00011555664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036607566,0.00039004165,0.00069648336,0.000025519304,0.00009787197,0.000032563363,0.00035693622,0.0008093983,0.000065642256],"category_scores_gemma":[0.00007392436,0.00024172028,0.0001530395,0.0001365049,0.0016877846,0.0000015061013,0.00022538009,0.00030491798,0.0000046153273],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007159115,0.000017623213,0.0000012257887,0.00052673,0.00013602698,0.0000121086005,0.0000042041775,2.8859155e-8,0.9232319,0.0000043883633,0.0006824389,0.07531173],"study_design_scores_gemma":[0.00039192435,0.00032344082,0.0000037212292,0.00054775004,0.00034495752,0.00046005793,0.00003857777,5.226793e-7,0.15988195,0.000028352919,0.83761287,0.00036588372],"about_ca_topic_score_codex":0.0000059198196,"about_ca_topic_score_gemma":9.504815e-7,"teacher_disagreement_score":0.83693045,"about_ca_system_score_codex":0.000030802905,"about_ca_system_score_gemma":0.00035845564,"threshold_uncertainty_score":0.9857067},"labels":[],"label_agreement":null},{"id":"W97968797","doi":"10.1023/a:1015249530156","title":"Ferric hydroxamate binding protein FhuD from Escherichia coli: mutants in conserved and non-conserved regions","year":2002,"lang":"en","type":"article","venue":"BioMetals","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Periplasmic space; Biochemistry; Bacterial outer membrane; ATP-binding cassette transporter; Siderophore; Membrane transport protein; Integral membrane protein; Biology; Transport protein; Membrane protein; Binding protein; Escherichia coli; Inner membrane; Protein structure; Ferrichrome; Chemistry; Membrane; Transporter; Gene","score_opus":0.022047799611442393,"score_gpt":0.22597616201656828,"score_spread":0.20392836240512588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W97968797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973329,0.0010933924,0.000023380051,0.0005908522,0.00014161761,0.00045775317,0.00010539961,0.000025163949,0.00022956173],"genre_scores_gemma":[0.9972215,0.00050453475,0.0011439571,0.0001311102,0.00007465528,0.00005722833,0.00008223312,0.000028090768,0.0007566429],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860877,0.00008464246,0.00033381212,0.0005197316,0.000086208245,0.00036683615],"domain_scores_gemma":[0.99931455,0.0000121910325,0.00013206917,0.0004045348,0.00003241812,0.0001042406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014766597,0.00023520192,0.00030407336,0.0001800848,0.000077757875,0.000056972814,0.00022619666,0.000451013,0.00008085594],"category_scores_gemma":[0.000074919815,0.0002249017,0.0000668165,0.0004126425,0.00019125515,0.0000051249444,0.0002023075,0.00011659085,0.000040802697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036018017,0.00008015994,0.0015287499,0.00001257668,0.000058667483,0.00001650752,0.000019594316,2.1324489e-7,0.9974488,0.000015185851,0.00025655192,0.00052699883],"study_design_scores_gemma":[0.0011517992,0.00028171387,0.006517857,0.000043474563,0.000023193865,0.000008380174,0.000039587874,0.00017495785,0.9841589,0.00010949915,0.0071553933,0.00033528544],"about_ca_topic_score_codex":0.00019868718,"about_ca_topic_score_gemma":0.00018772171,"teacher_disagreement_score":0.013289918,"about_ca_system_score_codex":0.0000135088285,"about_ca_system_score_gemma":0.000025659965,"threshold_uncertainty_score":0.91712254},"labels":[],"label_agreement":null}]}