{"meta":{"query_hash":"cf5848e685b7","filters":{"topic":"Bacterial Identification and Susceptibility Testing"},"cohort_total":743,"direct_labels_cover":1,"predictions_cover":743,"exported":743,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/cf5848e685b7","api":"https://metacan.xera.ac/api/v1/cohort?topic=Bacterial+Identification+and+Susceptibility+Testing"},"results":[{"id":"W100434825","doi":"10.1155/2007/403860","title":"Launching of the CAN‐R Web Site –The Official Web Site of the Canadian Antimicrobial Resistance Alliance","year":2007,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; University of Manitoba; University Health Network; Health Sciences Centre","funders":"","keywords":"Antimicrobial; Antibiotic resistance; Enterococcus faecium; Microbiology; Drug resistance; Antimicrobial stewardship; Streptococcus pneumoniae; Medical microbiology; Medicine; Biology; Antibiotics","score_opus":0.004854291729049899,"score_gpt":0.2138231925674946,"score_spread":0.20896890083844472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W100434825","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99538493,0.00084392464,0.000010294416,0.0021640675,0.0010127075,0.00012113124,0.0003350718,0.0000013742,0.00012647657],"genre_scores_gemma":[0.99804425,0.00007691456,0.000009438314,0.0014491514,0.0002958073,5.5149127e-7,0.00001559754,0.000008485192,0.000099788005],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99887854,0.00017637576,0.0004401392,0.00014705525,0.00007178376,0.00028608504],"domain_scores_gemma":[0.9986812,0.00006063995,0.00033339552,0.00024035721,0.00025575774,0.00042868702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058002234,0.00010825598,0.00019002736,0.000054075943,0.00033167913,0.00002049985,0.00031350384,0.00018284428,0.000047155176],"category_scores_gemma":[0.0013091865,0.000065271706,0.0001565059,0.00015342826,0.00086715474,0.0000041870076,0.000044693923,0.00024074082,5.689523e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004882688,0.000029458133,0.26079193,0.000054618817,0.00006736434,0.000013036558,0.00019599035,0.000011374031,0.7306157,0.00009313438,0.0074191154,0.00065948744],"study_design_scores_gemma":[0.0022619574,0.00027017086,0.6936292,0.0007693008,0.0002725311,0.0011520534,0.00022944415,0.000019379126,0.037588254,0.000118886855,0.26321742,0.00047137722],"about_ca_topic_score_codex":0.043918237,"about_ca_topic_score_gemma":0.9638779,"teacher_disagreement_score":0.91995966,"about_ca_system_score_codex":0.00008134825,"about_ca_system_score_gemma":0.0040558768,"threshold_uncertainty_score":0.9624484},"labels":[],"label_agreement":null},{"id":"W100435964","doi":"10.1016/s0891-5520(05)70191-4","title":"SUSCEPTIBILITY TESTING","year":2001,"lang":"en","type":"review","venue":"Infectious Disease Clinics of North America","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta Hospital; Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Genotype; Amplicon; Medicine; Antibiotic resistance; Molecular diagnostics; Turnaround time; Computational biology; Genetics; Biology; Polymerase chain reaction; Antibiotics; Gene; Computer science","score_opus":0.053790179150571535,"score_gpt":0.34881454980085513,"score_spread":0.2950243706502836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W100435964","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.021483906,0.975623,0.00019825733,0.0000055671526,0.00060585653,0.00090367644,0.00044058898,0.00010189545,0.0006372121],"genre_scores_gemma":[0.007386654,0.98959845,0.00022854736,0.0000696002,0.0005333639,0.00007721477,0.0018413857,0.00007792727,0.00018683355],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99693674,0.00034290127,0.0013034693,0.0008955036,0.00018624167,0.00033514813],"domain_scores_gemma":[0.9964805,0.00027380718,0.0011768773,0.0013048853,0.00042356868,0.00034031537],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029488685,0.00044597904,0.0011331344,0.00011270611,0.00011948948,0.00004343114,0.00041967508,0.00022281642,0.00006348369],"category_scores_gemma":[0.0050149756,0.00044257124,0.00081120525,0.0006569007,0.0002819986,0.000006171008,0.00024529,0.00028742486,0.00007569069],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016118805,0.00033734855,0.06029511,0.0031269311,0.00011269235,0.000004989379,0.0000031961547,0.000008772551,0.0000046307223,7.807701e-7,0.00024606622,0.93584335],"study_design_scores_gemma":[0.00015495528,0.00023405094,0.010892931,0.0007325741,0.0005577733,0.000009208123,0.000002746957,0.000012503081,3.7691856e-7,0.000024290837,0.98690516,0.00047341312],"about_ca_topic_score_codex":0.000060368868,"about_ca_topic_score_gemma":0.00019754677,"teacher_disagreement_score":0.9866591,"about_ca_system_score_codex":0.000043316242,"about_ca_system_score_gemma":0.00082057563,"threshold_uncertainty_score":0.9998026},"labels":[],"label_agreement":null},{"id":"W112876116","doi":"10.3233/978-1-60750-806-9-145","title":"Knowledge-based Surveillance for Preventing Postoperative Surgical Site Infection","year":2011,"lang":"en","type":"article","venue":"Studies in health technology and informatics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of New Brunswick; University of Ottawa; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Toll; Infection control; Medical emergency; Medicine; Surgical site infection; Process (computing); Computer science; Intensive care medicine; Surgery","score_opus":0.06302100106250537,"score_gpt":0.3621854731704957,"score_spread":0.29916447210799035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W112876116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965421,0.0012278851,0.0010728608,0.00025354128,0.00017624845,0.00037401647,0.00000813561,0.000035334604,0.00030985195],"genre_scores_gemma":[0.99388117,0.0005998897,0.0052241916,0.00011521837,0.000021654098,0.00006872047,0.000029153707,0.00000480113,0.00005523268],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992243,0.00004426575,0.0004236934,0.000111578716,0.000022293978,0.00017386384],"domain_scores_gemma":[0.99952173,0.000038084847,0.00014571547,0.00012984216,0.00014262124,0.000021984286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006450487,0.000084292624,0.00016320379,0.00011995632,0.0001766788,0.0000056680997,0.000048119542,0.0001242264,0.000001738905],"category_scores_gemma":[0.00041138276,0.00007849903,0.00002184784,0.0001683592,0.00018233492,0.000008063,0.00007466669,0.00008682853,0.0000015969936],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003179928,0.0003466868,0.89990145,0.0031151997,0.00011926971,0.0000011262241,0.013031981,0.000021049429,0.0030969663,0.007023622,0.0008952021,0.07212946],"study_design_scores_gemma":[0.015354756,0.010482809,0.4444968,0.0016719797,0.000052107836,0.00019843687,0.024273885,0.012882657,0.08005897,0.007790292,0.40009272,0.0026445698],"about_ca_topic_score_codex":0.000012603607,"about_ca_topic_score_gemma":0.00027121676,"teacher_disagreement_score":0.45540464,"about_ca_system_score_codex":0.000022114453,"about_ca_system_score_gemma":0.00005723681,"threshold_uncertainty_score":0.32010975},"labels":[],"label_agreement":null},{"id":"W1148383869","doi":"10.1155/2009/518471","title":"Antimicrobial Susceptibility of 6685 Organisms Isolated from Canadian Hospitals: CANWARD 2007","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada; University of Manitoba; Health Sciences Centre","funders":"Astellas Pharma; University of Alberta; Health Canada; Bayer; University of Manitoba; Wyeth; Pfizer Canada; Merck","keywords":"Tigecycline; Broth microdilution; Linezolid; Microbiology; Cefepime; Antimicrobial; Dalbavancin; Daptomycin; Meropenem; Medicine; Vancomycin; Piperacillin; Ertapenem; Tazobactam; Minimum inhibitory concentration; Methicillin-resistant Staphylococcus aureus; Amikacin; Staphylococcus aureus; Antibiotic resistance; Antibiotics; Imipenem; Biology; Bacteria","score_opus":0.0037330965827048744,"score_gpt":0.2139952997636402,"score_spread":0.21026220318093533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1148383869","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99657047,0.0011126233,0.00012026537,0.00084573776,0.0007564425,0.00010072493,0.00040149392,0.000004618414,0.000087625805],"genre_scores_gemma":[0.9978356,0.00015142842,0.000047421705,0.0014024958,0.00033395897,4.235262e-7,0.00019531958,0.00000997594,0.000023402179],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99874574,0.00012678318,0.000496731,0.00024540018,0.000048286194,0.00033704843],"domain_scores_gemma":[0.9978696,0.000028590177,0.00021032768,0.00019661644,0.00033042533,0.001364445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025236575,0.00014994686,0.00031356546,0.00014525923,0.00011868537,0.00003013103,0.00020575641,0.00031563253,0.0006386445],"category_scores_gemma":[0.0010607408,0.00014056283,0.00011835048,0.00009826879,0.00030773712,0.000008757695,0.000016207221,0.00017855948,0.0000041461763],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065976135,0.000084638305,0.3048429,0.000019707673,0.00012324903,0.00007814734,0.00013098595,0.00000298232,0.67712253,0.000039532366,0.010642717,0.0068466775],"study_design_scores_gemma":[0.003322426,0.0025315813,0.9375928,0.00025113745,0.0002700384,0.001362005,0.0002870282,0.000019088564,0.017129676,0.00066470343,0.035772648,0.00079686474],"about_ca_topic_score_codex":0.13254586,"about_ca_topic_score_gemma":0.5298042,"teacher_disagreement_score":0.6599928,"about_ca_system_score_codex":0.00008949447,"about_ca_system_score_gemma":0.0029431223,"threshold_uncertainty_score":0.8732306},"labels":[],"label_agreement":null},{"id":"W1181417886","doi":"10.1007/s11910-015-0580-y","title":"Application of “Omics” Technologies for Diagnosis and Pathogenesis of Neurological Infections","year":2015,"lang":"en","type":"review","venue":"Current Neurology and Neuroscience Reports","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Omics; Proteomics; Genomics; Computational biology; Nervous system; Neurology; Bioinformatics; Biology; Neuroscience; Genome; Gene; Genetics","score_opus":0.0744640200831175,"score_gpt":0.3594493569377119,"score_spread":0.2849853368545944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1181417886","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12937924,0.86802906,0.0005790351,0.000058996997,0.0007451576,0.0010896182,0.00008091416,0.000034302964,0.0000036467802],"genre_scores_gemma":[0.06539228,0.93414557,0.00003964064,0.000015577649,0.000031559415,0.00030370275,0.000056587724,0.000012365019,0.0000027216743],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983756,0.00011553859,0.0005802447,0.0007103978,0.000071201466,0.00014699833],"domain_scores_gemma":[0.99862725,0.00009313896,0.00070228113,0.0004051633,0.00012329785,0.00004886807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004183037,0.00018120212,0.0005509718,0.000113609676,0.00007580211,0.000011849331,0.00013250369,0.00027497267,2.258837e-7],"category_scores_gemma":[0.0015177063,0.0001559988,0.000113741764,0.00017241403,0.00053019245,0.000006162924,0.00022969361,0.00012839564,7.0113664e-8],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013477836,0.00017176651,0.021110266,0.0019777059,0.0000053477092,0.0000023723007,0.0000054635584,0.0000018044054,0.009211716,0.00006299831,0.000050441908,0.96738666],"study_design_scores_gemma":[0.000100922465,0.0011460105,0.0038841174,0.00009547741,0.00020973897,0.0004973278,0.0000024097906,0.000066997985,0.00075895886,0.0003007255,0.9927119,0.00022541144],"about_ca_topic_score_codex":0.0000014013059,"about_ca_topic_score_gemma":0.0000015525214,"teacher_disagreement_score":0.9926615,"about_ca_system_score_codex":0.0000017929334,"about_ca_system_score_gemma":0.0000940086,"threshold_uncertainty_score":0.63614464},"labels":[],"label_agreement":null},{"id":"W1493789929","doi":"10.1186/s12907-015-0010-8","title":"Comparison of time-motion analysis of conventional stool culture and the BD MAX™ Enteric Bacterial Panel (EBP)","year":2015,"lang":"en","type":"article","venue":"BMC Clinical Pathology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Turnaround time; Microbiological culture; Clinical microbiology; Diarrhea; Internal medicine; Gastroenterology; Microbiology; Bacteria; Biology","score_opus":0.136978900850597,"score_gpt":0.40249583057510196,"score_spread":0.26551692972450497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1493789929","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99644303,0.00010209756,0.0027789955,0.00006944803,0.00029728247,0.00013872962,0.000051569023,0.0000053116564,0.000113531],"genre_scores_gemma":[0.9980494,0.00001956277,0.0009156255,0.000050387534,0.00013726314,0.000005779195,0.0005440769,0.0000049093283,0.00027302097],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980324,0.0007552618,0.0007591896,0.00027227166,0.000090619265,0.00009023803],"domain_scores_gemma":[0.9988742,0.0001380277,0.0004184162,0.00029425972,0.00021780745,0.000057295143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014497889,0.00008451213,0.00044898424,0.000038202797,0.000027550006,0.000010195182,0.00013672245,0.00020183613,0.000070753806],"category_scores_gemma":[0.0017398561,0.00006208042,0.00021998497,0.00011791392,0.0005062224,0.0000034581553,0.00011249644,0.00008238227,0.00000613756],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013451637,0.00043337923,0.6282239,0.000026511618,0.0002812229,5.3086666e-7,0.00024012761,0.000039348186,0.36712238,0.00027398914,0.000795072,0.0012183546],"study_design_scores_gemma":[0.0048846523,0.0006703949,0.98257554,0.000010280006,0.0008550372,0.000011651983,0.0003272408,0.003259221,0.0050201155,0.00025439978,0.0019557804,0.00017571113],"about_ca_topic_score_codex":0.000011073385,"about_ca_topic_score_gemma":0.00004856555,"teacher_disagreement_score":0.36210227,"about_ca_system_score_codex":0.0000041950366,"about_ca_system_score_gemma":0.000042993448,"threshold_uncertainty_score":0.2531566},"labels":[],"label_agreement":null},{"id":"W1521812393","doi":"10.1111/j.1574-695x.2010.00694.x","title":"<i>Staphylococcus aureus</i>biofilm formation and tolerance to antibiotics in response to oscillatory shear stresses of physiological levels","year":2010,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biofilm; Shear stress; Shear (geology); Staphylococcus aureus; Antibiotics; Microbiology; Biology; Sloughing; Biophysics; Bacteria; Materials science; Composite material; Medicine; Pathology","score_opus":0.012431031349822454,"score_gpt":0.26356867155437924,"score_spread":0.2511376402045568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1521812393","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973587,0.0001804871,0.00019987862,0.0013066244,0.00054637104,0.000291617,0.000079824444,0.0000174671,0.000019050163],"genre_scores_gemma":[0.997564,0.00003971936,0.0011269957,0.0010378944,0.000094701405,0.0000058309515,0.00007817974,0.0000113021015,0.00004134644],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99830216,0.00032533132,0.00050438475,0.00046703615,0.000055857094,0.0003452459],"domain_scores_gemma":[0.9991129,0.00011377926,0.0001090642,0.0004104769,0.000120306104,0.00013344825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076065236,0.000172234,0.00033368365,0.00012727085,0.0000611252,0.0000102313925,0.00033671313,0.0006378521,0.000092085174],"category_scores_gemma":[0.002604546,0.00015715451,0.000047779286,0.00016579265,0.00045281678,0.000007024709,0.00031136777,0.00032972396,0.000022436068],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047037945,0.00009122427,0.002985177,0.000016081576,0.000014509217,0.0000026474295,0.00015578028,0.0000045491697,0.993877,0.000036869722,0.0004892145,0.0018565506],"study_design_scores_gemma":[0.00065462495,0.0005958126,0.26261175,0.000039234103,0.0000044783433,0.00003915748,0.00010406893,0.000009918096,0.7218111,0.00002580054,0.013908314,0.00019574237],"about_ca_topic_score_codex":0.0000404225,"about_ca_topic_score_gemma":0.00030104053,"teacher_disagreement_score":0.2720659,"about_ca_system_score_codex":0.000013743667,"about_ca_system_score_gemma":0.00011591617,"threshold_uncertainty_score":0.6408575},"labels":[],"label_agreement":null},{"id":"W1530596475","doi":"10.1002/9781118960608.bm00009","title":"<i>The History of Bergey's Manual</i>","year":2015,"lang":"en","type":"other","venue":"Bergey's Manual of Systematics of Archaea and Bacteria","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Compendium; Systematics; Biology; Determinative; Resource (disambiguation); Bacteriology; Ecology; History; Taxonomy (biology); Archaeology; Computer science; Bacteria; Paleontology","score_opus":0.01729817181336899,"score_gpt":0.25571332924067725,"score_spread":0.23841515742730826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1530596475","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.71950334,0.0314917,0.00033585538,0.0003242546,0.012573987,0.004313404,0.0024960497,0.00013386585,0.22882757],"genre_scores_gemma":[0.2074354,0.0011582626,0.0027663962,0.000030911997,0.0006342922,0.00004003314,0.00077932596,0.0003370246,0.7868183],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99785656,0.00022107964,0.001079772,0.00033004937,0.00030390316,0.00020866786],"domain_scores_gemma":[0.9971752,0.00006434459,0.0015038298,0.0008348838,0.00031427562,0.000107454725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009227332,0.00028809646,0.0007640097,0.000113343995,0.000027337199,0.000010790071,0.00041589478,0.00032216852,0.00010153622],"category_scores_gemma":[0.00029456723,0.00023035725,0.00014939177,0.000057940546,0.0004923145,0.0000052737864,0.0002865714,0.00008664615,0.0000057546263],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012024437,0.00014549156,0.00038468593,0.009681183,0.00039633704,0.0000013621448,0.0006221985,3.5795884e-7,0.477205,0.00050799135,0.51058036,0.0003547413],"study_design_scores_gemma":[0.00082113093,0.00050515926,0.00082512945,0.0022041267,0.00027374667,0.000019738176,0.000575113,0.000013750726,0.011336973,0.00016579038,0.98271024,0.00054910587],"about_ca_topic_score_codex":0.00021669538,"about_ca_topic_score_gemma":0.00033079737,"teacher_disagreement_score":0.5579908,"about_ca_system_score_codex":0.000033259254,"about_ca_system_score_gemma":0.00022149245,"threshold_uncertainty_score":0.9393696},"labels":[],"label_agreement":null},{"id":"W1532784310","doi":"10.5772/31526","title":"Improving the Likelihood of Success in Trials and the Efficiency of Delivery of Mucolytics and Antibiotics","year":2012,"lang":"en","type":"book-chapter","venue":"InTech eBooks","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Antibiotics; Computer science; Medicine; Intensive care medicine; Biology; Microbiology","score_opus":0.024885753031606384,"score_gpt":0.2613994652917114,"score_spread":0.23651371226010498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1532784310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99122524,0.002194814,0.0003008232,0.000025930969,0.0001316211,0.0006062622,0.000055099335,0.000003396375,0.0054567936],"genre_scores_gemma":[0.9982974,0.00020535932,0.00010070675,0.000015490457,0.00005224829,9.5064945e-7,0.000007158452,0.0000133862895,0.0013073237],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988401,0.00009280531,0.00069759955,0.00017417721,0.00009662896,0.00009870711],"domain_scores_gemma":[0.99854904,0.00024031194,0.0006640953,0.0003490653,0.0001756607,0.00002180699],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017452291,0.00013180045,0.0004247017,0.000052560452,0.000026920094,0.000013157984,0.00019486711,0.00022311341,0.0000047334547],"category_scores_gemma":[0.0005852137,0.000082391925,0.0000949554,0.000011285578,0.00065532833,0.0000017497101,0.00021351887,0.00013291245,1.2206681e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106572945,0.000013783786,0.00027530076,0.00017010052,0.000038059967,1.2994487e-7,0.00020993626,5.2999308e-8,0.9859002,0.0012268978,0.0000022271934,0.012056709],"study_design_scores_gemma":[0.0006943369,0.00009820723,0.0002799563,0.00018483817,0.00011446846,0.0000047111525,0.00010945624,0.000024243784,0.9972746,0.00080687186,0.00029962414,0.000108731416],"about_ca_topic_score_codex":0.00014632467,"about_ca_topic_score_gemma":0.00010750492,"teacher_disagreement_score":0.011947978,"about_ca_system_score_codex":0.000004891373,"about_ca_system_score_gemma":0.00007284764,"threshold_uncertainty_score":0.33598453},"labels":[],"label_agreement":null},{"id":"W1565742297","doi":"10.1139/w11-136","title":"Prevalence of bacteriocin activities and bacteriocin-encoding genes in enterococcal clinical isolates in Iran","year":2012,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Bacteriocin; Gene; Microbiology; Biology; Enterococcus; Genetics; Antimicrobial; Antibiotics","score_opus":0.029518200916540695,"score_gpt":0.2795195537213618,"score_spread":0.2500013528048211,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1565742297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979341,0.0014745548,0.000013693507,0.000078009616,0.00038818078,0.00006428487,0.000023953227,6.7139143e-7,0.000022527627],"genre_scores_gemma":[0.99916893,0.0003080507,0.00027059016,0.000063955275,0.00013529838,9.1462687e-7,0.000008348596,0.000006578373,0.00003732361],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988,0.00023992949,0.00056533806,0.00013245567,0.000013024019,0.00024927696],"domain_scores_gemma":[0.9994194,0.000049642145,0.00022321768,0.00010609777,0.000040632036,0.0001610424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00081860274,0.000089584406,0.00023001133,0.00014983016,0.000023659733,0.00001313108,0.00014122525,0.00016587367,0.00005162541],"category_scores_gemma":[0.0002434242,0.000087618464,0.000056595047,0.00005018156,0.00019687178,0.000018525096,0.000028726474,0.0001487141,7.783943e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020537995,0.0000127825315,0.48854116,0.000021918087,0.000005863394,0.000001075095,0.0001759297,3.2717512e-7,0.51010966,0.0000022786326,0.000009109455,0.0010993432],"study_design_scores_gemma":[0.00046694456,0.00018161589,0.95110613,0.00009299879,0.000008607167,0.00018220147,0.00031129923,0.0000019237948,0.045760833,0.000003538023,0.0017799787,0.00010390714],"about_ca_topic_score_codex":0.00045257335,"about_ca_topic_score_gemma":0.00990417,"teacher_disagreement_score":0.46434885,"about_ca_system_score_codex":0.000029112562,"about_ca_system_score_gemma":0.00019670055,"threshold_uncertainty_score":0.55267596},"labels":[],"label_agreement":null},{"id":"W1593550677","doi":"10.1093/jaoac/89.1.100","title":"Comparison of the Compact Dry EC with the Most Probable Number Method (AOAC Official Method 966.24) for Enumeration of Escherichia coli and Coliform Bacteria in Raw Meats: Performance-Tested MethodSM 110402","year":2006,"lang":"en","type":"article","venue":"Journal of AOAC International","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Enumeration; Bacteria; Escherichia coli; Food science; Coliform bacteria; Raw milk; Biology; Microbiology; Chemistry; Mathematics","score_opus":0.022640844563204445,"score_gpt":0.33886237167234123,"score_spread":0.3162215271091368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1593550677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96367145,0.000033924192,0.0348468,0.0005174511,0.0003062434,0.00030437647,0.00002643652,0.0000020005898,0.00029134215],"genre_scores_gemma":[0.92759633,0.0000057160223,0.07192085,0.000053938602,0.00018898,0.000006666101,0.000040658895,0.000011249517,0.0001756355],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985641,0.00026156518,0.0006887302,0.0001410448,0.00023139532,0.000113141665],"domain_scores_gemma":[0.99810183,0.00016157013,0.0009071226,0.00014547759,0.0006607638,0.000023207676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001367072,0.00012019712,0.00028422286,0.00005111253,0.000078053505,0.000049081256,0.000247845,0.0000882842,0.000024929906],"category_scores_gemma":[0.00022283221,0.00007605723,0.000088488916,0.0001351278,0.00008354158,0.000031857293,0.000043792275,0.00014598695,1.6839917e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000731079,0.0002133736,0.08608104,0.00004173688,0.000105020925,1.3488743e-7,0.00022964524,0.0026344315,0.90782684,0.00026657575,0.00050401606,0.0013661049],"study_design_scores_gemma":[0.0016536834,0.00031232912,0.2645959,0.000101735954,0.00008282645,0.00002616748,0.0003397504,0.016948627,0.71157247,0.0001377197,0.0040946906,0.00013414056],"about_ca_topic_score_codex":0.00009403345,"about_ca_topic_score_gemma":0.00030568303,"teacher_disagreement_score":0.1962544,"about_ca_system_score_codex":0.000041960448,"about_ca_system_score_gemma":0.00015842282,"threshold_uncertainty_score":0.31015238},"labels":[],"label_agreement":null},{"id":"W1595882434","doi":"10.25011/cim.v30i4.1777","title":"Investigation of sources of potential bias in laboratory surveillance for anti-microbial resistance","year":2007,"lang":"en","type":"article","venue":"Clinical and investigative medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary; Alberta Health Services","funders":"","keywords":"Cohort; Medicine; Ciprofloxacin; Antibiotic resistance; Antimicrobial; Population; Cohort study; Ceftriaxone; Internal medicine; Veterinary medicine; Antibiotics; Biology; Environmental health; Microbiology","score_opus":0.11124925416307589,"score_gpt":0.3355476107433563,"score_spread":0.2242983565802804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1595882434","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976943,0.0002923478,0.00047937437,0.0010995712,0.0001980324,0.00017510209,0.00002611591,0.0000038009712,0.00003137148],"genre_scores_gemma":[0.99802697,0.000058270256,0.0012868604,0.00022024185,0.00025089912,0.0000024370383,0.00007162347,0.000006473856,0.00007622257],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986523,0.00014991028,0.00076962146,0.00024901162,0.00007372251,0.00010545447],"domain_scores_gemma":[0.9990103,0.00014275187,0.00033098418,0.00014483336,0.00028712474,0.00008400162],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0024204548,0.00008353786,0.0002849693,0.000046882662,0.000025646345,0.0000027293622,0.00007962183,0.00011220223,0.0000037363272],"category_scores_gemma":[0.0043497826,0.000070928116,0.000037038146,0.00014908041,0.0035608225,0.0000060915754,0.000029735056,0.000071485745,1.4685934e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006589476,0.000012388324,0.38086382,0.00006628136,0.00000754202,2.3631176e-7,0.000093544,5.276271e-7,0.6182553,0.0002201462,0.00027489004,0.00013941758],"study_design_scores_gemma":[0.0009453205,0.00023077602,0.74899554,0.000104228326,0.0000074601203,3.8668873e-7,0.00013831639,0.0000126813275,0.24733563,0.0014923712,0.0006698548,0.00006743863],"about_ca_topic_score_codex":0.00002849869,"about_ca_topic_score_gemma":0.0002754955,"teacher_disagreement_score":0.37091967,"about_ca_system_score_codex":0.0000031198674,"about_ca_system_score_gemma":0.00006783477,"threshold_uncertainty_score":0.99915093},"labels":[],"label_agreement":null},{"id":"W1606852178","doi":"","title":"Identification of Microorganisms by Mass Spectrometry","year":2005,"lang":"en","type":"book","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Mass spectrometry; Matrix-assisted laser desorption/ionization; Chromatography; Chemistry; Bacteria; Bacterial taxonomy; Identification (biology); Biology; 16S ribosomal RNA; Desorption; Genetics","score_opus":0.006329970085393136,"score_gpt":0.2288383492857902,"score_spread":0.22250837920039707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1606852178","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06338461,0.004641851,0.064631976,0.0008154565,0.0021364253,0.0018868576,0.0015738424,0.00022517247,0.8607038],"genre_scores_gemma":[0.038507756,0.00014889517,0.001589418,0.00008593183,0.00040804487,0.0000047777944,0.0022207228,0.000045801375,0.95698863],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99869895,0.000030711344,0.0005519945,0.00044270547,0.00013663377,0.0001390146],"domain_scores_gemma":[0.9988184,0.0000096913855,0.00037017366,0.00059356954,0.00015663206,0.00005151726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002348292,0.00018611981,0.00021179646,0.00006684906,0.000034299526,0.000038387512,0.00027972748,0.00038874804,0.0005526757],"category_scores_gemma":[0.0000887317,0.00020256934,0.00012292035,0.00004872039,0.000075749194,0.0000026049004,0.000057640547,0.00010647598,0.00010098523],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000646965,0.000028003353,0.000021409529,0.000035521774,0.0000339106,9.3512234e-8,0.000005426588,1.8352803e-7,0.8828156,0.00018919629,0.1163662,0.00049798656],"study_design_scores_gemma":[0.00012385138,0.00004356436,0.00010714444,0.000011106718,0.000028662924,0.0000027252524,0.000008923584,0.000003146434,0.8508898,0.0002641997,0.14831342,0.00020346126],"about_ca_topic_score_codex":0.0000036167582,"about_ca_topic_score_gemma":0.000008992019,"teacher_disagreement_score":0.096284844,"about_ca_system_score_codex":0.00004781455,"about_ca_system_score_gemma":0.0001506845,"threshold_uncertainty_score":0.8260538},"labels":[],"label_agreement":null},{"id":"W160820796","doi":"10.1155/2013/701093","title":"Evaluation of MALDI‐TOF Mass Spectrometry and Sepsityper Kit™ for the Direct Identification of Organisms from Sterile Body Fluids in a Canadian Pediatric Hospital","year":2013,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Blood culture; Matrix-assisted laser desorption/ionization; Mass spectrometry; Chromatography; Identification (biology); Microbiology; Clinical microbiology; Bacteria; Biology; Chemistry; Antibiotics; Desorption","score_opus":0.005542240934733444,"score_gpt":0.22863283645319266,"score_spread":0.22309059551845922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W160820796","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99651986,0.0022239736,0.00013059034,0.0003254462,0.00034100632,0.00024847523,0.00019523849,8.922959e-7,0.000014541881],"genre_scores_gemma":[0.99945873,0.00019739453,0.000032389657,0.00007086497,0.00015232008,0.000008536335,0.00006560229,0.00000643947,0.000007748124],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99915946,0.00012464318,0.00035943688,0.00013610585,0.00006305253,0.00015731945],"domain_scores_gemma":[0.9988932,0.00007114959,0.00018153535,0.000107595144,0.00041794564,0.00032856312],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006658551,0.00007235852,0.000162823,0.00014406703,0.00005637753,0.000021742866,0.00009828372,0.0001246501,0.0002081782],"category_scores_gemma":[0.0016682819,0.000058246507,0.0000476101,0.000087246735,0.00014578695,0.000009845969,0.0000114512695,0.000064167834,6.09724e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000107197375,0.00003182269,0.37245014,0.000027499058,0.00007065422,0.0000010753417,0.000096879914,0.0000029029268,0.62474185,0.000014817275,0.00045245438,0.0020991806],"study_design_scores_gemma":[0.0009475017,0.00034043525,0.99039865,0.000022660362,0.00023399144,0.000029590115,0.00020533302,0.00016835131,0.006795056,0.00033766465,0.00041205846,0.00010872053],"about_ca_topic_score_codex":0.08096252,"about_ca_topic_score_gemma":0.1486025,"teacher_disagreement_score":0.61794853,"about_ca_system_score_codex":0.00006354643,"about_ca_system_score_gemma":0.0013267718,"threshold_uncertainty_score":0.9251574},"labels":[],"label_agreement":null},{"id":"W1641629353","doi":"10.1139/w11-039","title":"Matrix-assisted laser desorption ionization time-of-flight mass spectrometry and database for identification of <i>Legionella</i> species <sup>1</sup>This study was presented in part at the 110th American Society for Microbiology Annual Meeting, 23–27 May 2010, San Diego, California.","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Vanderbilt University Medical Center","keywords":"Legionella; Legionella pneumophila; Microbiology; Biology; Legionnaires' disease; Bacteria; Genetics","score_opus":0.020572807514337352,"score_gpt":0.24258637399517732,"score_spread":0.22201356648083997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1641629353","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956142,0.00032684297,0.0008714889,0.00020517263,0.00021337085,0.0006215469,0.0021362142,0.0000028709267,0.000008308638],"genre_scores_gemma":[0.9950351,0.00006154053,0.0018525101,0.00007624171,0.00012602612,0.000014157075,0.0016312505,0.000021593389,0.0011815443],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983194,0.00024683343,0.00082471763,0.00030532552,0.000032368047,0.00027133944],"domain_scores_gemma":[0.99817985,0.00009510703,0.0008502087,0.00028445394,0.000487021,0.00010336784],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010523179,0.00015921993,0.00034052943,0.00016257944,0.00013371752,0.000016622564,0.00024818632,0.00014645391,0.00007111616],"category_scores_gemma":[0.00034560444,0.00013461194,0.00015632063,0.00019878174,0.00045511592,0.000014940927,0.000045097702,0.00009978856,0.0000030875408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023202857,0.00007045202,0.038673595,0.00004137039,0.00012081666,8.302993e-7,0.000687748,0.000021491662,0.93402493,0.0000050488716,0.02606106,0.00006064944],"study_design_scores_gemma":[0.0034224284,0.001703298,0.03022673,0.0000972452,0.00038454783,0.0002668891,0.006815722,0.00022408128,0.91621906,0.000038557675,0.040089943,0.00051148294],"about_ca_topic_score_codex":0.00067953754,"about_ca_topic_score_gemma":0.011407416,"teacher_disagreement_score":0.017805835,"about_ca_system_score_codex":0.00007810632,"about_ca_system_score_gemma":0.00021369115,"threshold_uncertainty_score":0.63656056},"labels":[],"label_agreement":null},{"id":"W1650810605","doi":"10.1155/2013/101630","title":"The Changing Culture of the Microbiology Laboratory","year":2013,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke; University of Calgary","funders":"","keywords":"Modalities; Clinical microbiology; Identification (biology); Context (archaeology); Medical laboratory; Computer science; Microbiological Techniques; Standardization; Data science; Medicine; Biology; Pathology; Microbiology; Ecology","score_opus":0.002805303888849772,"score_gpt":0.1979623692239313,"score_spread":0.1951570653350815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1650810605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99469286,0.0032696642,0.00002202443,0.0010466379,0.0007722015,0.000094300565,0.000049546314,0.0000016442668,0.00005113955],"genre_scores_gemma":[0.9985504,0.00021016065,0.0000073613596,0.0008891676,0.0002159182,0.0000029109442,0.000012476266,0.0000053467807,0.0001062562],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99925727,0.00015917124,0.00025770353,0.00009896079,0.00002233643,0.00020453178],"domain_scores_gemma":[0.9990926,0.000038136706,0.00017859376,0.00014099559,0.00027656349,0.0002731539],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022807257,0.00007622923,0.00012459014,0.00003988854,0.00022187807,0.000024308983,0.00021181458,0.00015032315,0.00008851625],"category_scores_gemma":[0.0010538577,0.00004197272,0.000083482366,0.00008558107,0.0005236646,0.000003951954,0.000042544612,0.00013379946,0.0000022650072],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008092722,0.000018646615,0.0515421,0.000016561129,0.0000728601,0.000002417853,0.0001723624,7.63306e-7,0.9331807,0.00012987913,0.011499089,0.0033565538],"study_design_scores_gemma":[0.0026584936,0.0011575328,0.16876967,0.00028053587,0.00020939835,0.0031885046,0.002705681,0.000013494179,0.044424843,0.0008766683,0.7751085,0.0006066587],"about_ca_topic_score_codex":0.00041100587,"about_ca_topic_score_gemma":0.0030696203,"teacher_disagreement_score":0.88875586,"about_ca_system_score_codex":0.000018281165,"about_ca_system_score_gemma":0.0006624162,"threshold_uncertainty_score":0.19294639},"labels":[],"label_agreement":null},{"id":"W1678210392","doi":"10.1186/1471-2334-5-35","title":"Blood cultures in ambulatory outpatients","year":2005,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services","keywords":"Medicine; Blood culture; Ambulatory; Population; Ambulatory care; Emergency department; Medical microbiology; Internal medicine; Streptococcus pneumoniae; Health care; Acute care; Emergency medicine; Outpatient clinic; Antibiotics; Immunology; Biology; Microbiology; Nursing","score_opus":0.00876333366695393,"score_gpt":0.25842279532594487,"score_spread":0.24965946165899094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1678210392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99857605,0.0003305395,0.000052617732,0.000012100981,0.00012263874,0.00012792871,0.000015254536,0.000040054307,0.0007228368],"genre_scores_gemma":[0.9988925,0.000015310652,0.00016195815,0.00018553816,0.00028084044,0.000025486182,0.00010862156,0.000010685264,0.00031906256],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99935263,0.000047016892,0.00016279618,0.00023869537,0.00006457463,0.00013428285],"domain_scores_gemma":[0.9996163,0.000008139847,0.000046734007,0.00021478721,0.000048135094,0.000065857006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005098423,0.00009096648,0.00007504945,0.000030869094,0.000056131914,0.000034757966,0.00007120806,0.00006213652,0.000049919556],"category_scores_gemma":[0.00020530912,0.00009134625,0.00007785541,0.000063424275,0.0000313921,0.000006382349,0.000041958978,0.000036388108,0.000029758858],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001960185,0.00041025915,0.92568505,0.000020384836,0.000013344194,3.7166055e-7,0.00004449577,0.00015580142,0.07210932,0.000035240537,0.00065127003,0.0008548719],"study_design_scores_gemma":[0.001159007,0.00008974747,0.9786702,0.000014140689,0.000030887055,0.0000049101413,0.00003598983,0.000082424835,0.0126689,0.00005447499,0.006974153,0.00021519618],"about_ca_topic_score_codex":0.000032359723,"about_ca_topic_score_gemma":0.0005818098,"teacher_disagreement_score":0.059440423,"about_ca_system_score_codex":0.000015403988,"about_ca_system_score_gemma":0.000045128916,"threshold_uncertainty_score":0.3724992},"labels":[],"label_agreement":null},{"id":"W1732871190","doi":"10.1002/pds.2332","title":"A systematic review of validated methods for identifying infection related to blood products, tissue grafts, or organ transplants using administrative data","year":2012,"lang":"en","type":"review","venue":"Pharmacoepidemiology and Drug Safety","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Hamilton Health Sciences Foundation; U.S. Department of Health and Human Services","keywords":"Medicine; Intensive care medicine; Organ transplantation; Surgery; Transplantation","score_opus":0.33351036761842284,"score_gpt":0.5449667782656381,"score_spread":0.21145641064721526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1732871190","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000701271,0.980094,0.013884881,0.00009410785,0.00056423876,0.0044952207,0.0007597516,0.000029584322,0.00000809113],"genre_scores_gemma":[0.00008706228,0.96959364,0.024190513,0.00015993479,0.0001511112,0.00018924735,0.005392527,0.000051920146,0.00018405507],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99056715,0.0056958375,0.0023200791,0.0009861047,0.00007083877,0.00035998446],"domain_scores_gemma":[0.99599504,0.0012255247,0.0013892383,0.0009577138,0.000260772,0.00017173319],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.012260636,0.00046348193,0.002581044,0.00010777892,0.00017414444,0.000015347614,0.000454211,0.00036470935,0.00004586488],"category_scores_gemma":[0.010080098,0.00035510075,0.0001874315,0.00037034365,0.0000974847,0.000025720856,0.00024446848,0.00026303667,0.000004933595],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007904341,0.00010671776,0.0000135331165,0.95216775,0.0011104201,0.0000010692349,0.00007519832,2.6080141e-7,0.017144158,0.000017122298,0.00021500242,0.029069724],"study_design_scores_gemma":[0.0011075279,0.0002487501,0.000019181807,0.4952256,0.040527508,0.0009428164,0.000033834254,0.00008061384,0.01265668,0.00002831922,0.44765028,0.0014788709],"about_ca_topic_score_codex":0.000035929752,"about_ca_topic_score_gemma":0.000011210589,"teacher_disagreement_score":0.45694214,"about_ca_system_score_codex":0.00002521645,"about_ca_system_score_gemma":0.00029720255,"threshold_uncertainty_score":0.9998901},"labels":[],"label_agreement":null},{"id":"W1783336958","doi":"10.1111/trf.13050","title":"Validation of sterility testing of cord blood: challenges and results","year":2015,"lang":"en","type":"article","venue":"Transfusion","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Blood Services","funders":"Canadian Blood Services; Bristol-Myers Squibb Canada; Bristol-Myers Squibb","keywords":"Bacteroides fragilis; Microbiology; Candida albicans; Staphylococcus epidermidis; Biology; Staphylococcus; Cord blood; Staphylococcus aureus; Chemistry; Bacteria; Antibiotics; Immunology","score_opus":0.08729245110849787,"score_gpt":0.2891293059952439,"score_spread":0.20183685488674602,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1783336958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986664,0.00026097358,0.00009788681,0.00006104858,0.00005116216,0.00008981714,0.000013965335,0.0000065139534,0.0007522147],"genre_scores_gemma":[0.99833757,0.00021207149,0.0013523475,0.0000031671677,0.000026647864,0.0000013301906,0.00003761473,0.000003881899,0.000025376376],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994162,0.000058970174,0.00025003008,0.00015946278,0.00006614389,0.00004924329],"domain_scores_gemma":[0.99952716,0.000020351043,0.00008778494,0.00016436113,0.00016587847,0.000034457425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048070934,0.000047425958,0.000083951614,0.00001611912,0.000014070303,0.0000032990743,0.000042449094,0.000054584532,0.000001496692],"category_scores_gemma":[0.00045237507,0.00004619263,0.000016303717,0.00003410667,0.00004280996,0.0000034219356,0.000019480345,0.000021072716,2.308173e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003267589,0.0000528807,0.0020575551,0.000055081928,0.000004800616,8.086131e-8,0.00039896253,0.0000024422218,0.9787648,0.000008204269,0.0000045389534,0.018323943],"study_design_scores_gemma":[0.00072274084,0.0004609276,0.06419282,0.000029432473,0.000016101465,0.0000032333592,0.00018697872,0.000027658849,0.93403196,0.00007796702,0.00019502059,0.00005515001],"about_ca_topic_score_codex":0.00006940485,"about_ca_topic_score_gemma":0.00002904865,"teacher_disagreement_score":0.06213526,"about_ca_system_score_codex":0.0000016742384,"about_ca_system_score_gemma":0.000021968995,"threshold_uncertainty_score":0.18836807},"labels":[],"label_agreement":null},{"id":"W1790118296","doi":"10.25011/cim.v31i5.4873","title":"Revolutionizing the practice of medicine through rapid (&lt; 1h) DNA-based diagnostics","year":2008,"lang":"en","type":"article","venue":"Clinical and investigative medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"National Institutes of Health; Ministère de la Défense Nationale; Génome Québec; Canadian Institutes of Health Research; Genome Canada; Université Laval","keywords":"Clostridium difficile; Medicine; Food and drug administration; Staphylococcus aureus; Microbiology; Intensive care medicine; Antibiotics; Medical emergency; Biology; Bacteria","score_opus":0.18171663631978824,"score_gpt":0.364783591733467,"score_spread":0.1830669554136788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1790118296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8618501,0.0057376544,0.0022383872,0.1250234,0.00091217586,0.000440182,0.000011612181,0.00002741165,0.0037591127],"genre_scores_gemma":[0.9855971,0.0029486709,0.0019723123,0.008067665,0.0011046869,0.000009928039,0.00008844712,0.00001118393,0.00020005816],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99810785,0.00048722292,0.0007456322,0.00033642477,0.00018554353,0.00013731122],"domain_scores_gemma":[0.9978101,0.0008934694,0.00036421823,0.0003786419,0.00042653654,0.00012700677],"candidate_categories":["metaresearch","sts"],"consensus_categories":[],"category_scores_codex":[0.0014179879,0.00013819171,0.00031619336,0.000018810448,0.00020339768,0.0000034683237,0.00016309922,0.000119066826,0.00005397632],"category_scores_gemma":[0.04599025,0.000083072766,0.000050826795,0.00016841109,0.014786617,0.000012881576,0.00006892942,0.00019359344,0.0000032089106],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003881918,0.00053333107,0.14457512,0.0002307204,0.00028856625,0.000021001684,0.0034735848,0.000011158542,0.62458867,0.020731438,0.19838777,0.00677045],"study_design_scores_gemma":[0.0060149175,0.0049175937,0.3457641,0.0007614404,0.00037581578,0.00009180691,0.002014816,0.00034162155,0.03490246,0.00935307,0.5949865,0.00047587528],"about_ca_topic_score_codex":0.00007233998,"about_ca_topic_score_gemma":0.000012345368,"teacher_disagreement_score":0.5896862,"about_ca_system_score_codex":0.0000040459317,"about_ca_system_score_gemma":0.000102135644,"threshold_uncertainty_score":0.9878946},"labels":[],"label_agreement":null},{"id":"W1791016484","doi":"10.1111/1469-0691.12657","title":"Bloodstream infections due to Peptoniphilus spp.: report of 15 cases","year":2014,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Peptostreptococcus; Microbiology; Pneumonia; Biology; Bloodstream infection; Medicine; Internal medicine; Anaerobic bacteria; Bacteria","score_opus":0.025831545113792567,"score_gpt":0.3261827982158942,"score_spread":0.30035125310210165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1791016484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967633,0.000023233391,0.0017416031,0.00016086527,0.0007045056,0.00012963427,0.00000998018,0.000020655016,0.0004462398],"genre_scores_gemma":[0.998691,0.000034815406,0.00029298136,0.00023878511,0.00030997628,0.00000842575,0.00016394815,0.0000071132818,0.0002529615],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988375,0.00020915786,0.00047964032,0.00034723402,0.0000124030175,0.00011411237],"domain_scores_gemma":[0.99924433,0.000118838034,0.00016125821,0.0002700509,0.00013253519,0.00007299783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069091975,0.00009217355,0.00019901618,0.00004299038,0.00009154183,0.0000104319015,0.000043147516,0.00025189057,0.000049196133],"category_scores_gemma":[0.0028160235,0.00008833144,0.000089620116,0.000075312324,0.00017200434,0.000004234354,0.00007704037,0.00009986103,0.000022678254],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028274802,0.00019573595,0.24264166,0.000013689122,0.00003136035,0.0000015993006,0.0000072133635,0.0000041406006,0.7516468,0.00006288338,0.0015006904,0.0038659244],"study_design_scores_gemma":[0.00096614147,0.003409003,0.6137194,0.000040476534,0.00009481126,0.0032032742,0.000018319366,0.000018234734,0.15629452,0.00020555368,0.2216549,0.00037535033],"about_ca_topic_score_codex":0.000104866456,"about_ca_topic_score_gemma":0.00035851903,"teacher_disagreement_score":0.5953523,"about_ca_system_score_codex":0.0000044052367,"about_ca_system_score_gemma":0.00002807347,"threshold_uncertainty_score":0.36020517},"labels":[],"label_agreement":null},{"id":"W1791412297","doi":"10.1128/jcm.38.2.513-520.2000","title":"Rapid Identification of Bacteria from Positive Blood Cultures by Fluorescence-Based PCR–Single-Strand Conformation Polymorphism Analysis of the 16S rRNA Gene","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"","keywords":"Bacteremia; Single-strand conformation polymorphism; Biology; Blood culture; 16S ribosomal RNA; Microbiology; Bacteria; Pathogen; Polymerase chain reaction; Genetics; Gene; Antibiotics","score_opus":0.020325405069483563,"score_gpt":0.2892113467152765,"score_spread":0.26888594164579294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1791412297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981302,0.00031301077,0.00024224362,0.00029591954,0.00031586448,0.00010076428,0.00057727046,0.0000021580513,0.000022547316],"genre_scores_gemma":[0.9979824,0.00021917555,0.0007315051,0.00015627008,0.00013949753,7.7280987e-7,0.0007048078,0.000006155463,0.00005942385],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971953,0.00049797306,0.0019222237,0.00019920761,0.00006994225,0.00011537211],"domain_scores_gemma":[0.9972868,0.00015355815,0.001766436,0.0003169952,0.0004197725,0.000056434426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008312808,0.000117420095,0.0004943778,0.000065479035,0.000047727648,0.000016607944,0.00033926754,0.00027758253,0.00027618563],"category_scores_gemma":[0.0005088146,0.000084311076,0.0005043392,0.00018522011,0.00030211764,0.000012787084,0.000025045509,0.0001512263,0.0000017672369],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004554186,0.00036481753,0.0054583377,0.0000056046592,0.0006534501,2.1046638e-7,0.000056154084,0.00002593894,0.98913205,0.0000014505843,0.00034392573,0.0035026653],"study_design_scores_gemma":[0.0010175563,0.00031632543,0.12121653,0.0000225371,0.0006916925,0.000008002495,0.000022102136,0.000043241685,0.8756433,0.000011037203,0.00092817127,0.000079470745],"about_ca_topic_score_codex":0.000035121422,"about_ca_topic_score_gemma":0.000012600013,"teacher_disagreement_score":0.11575819,"about_ca_system_score_codex":0.0000083698005,"about_ca_system_score_gemma":0.00009411013,"threshold_uncertainty_score":0.3438106},"labels":[],"label_agreement":null},{"id":"W1820587150","doi":"10.1128/aac.00677-15","title":"Metronidazole- and Carbapenem-Resistant Bacteroides thetaiotaomicron Isolated in Rochester, Minnesota, in 2014","year":2015,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; National Cancer Institute; Canadian Food Inspection Agency","keywords":"Bacteroides thetaiotaomicron; Bacteroides fragilis; Microbiology; Bacteroides; Ertapenem; Piperacillin; Biology; Meropenem; Metronidazole; Anaerobic bacteria; Antimicrobial; Carbapenem; Antibiotic resistance; Antibiotics; Bacteria; Pseudomonas aeruginosa; Genetics","score_opus":0.015583311141688101,"score_gpt":0.24838158013296227,"score_spread":0.23279826899127418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1820587150","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986135,0.00017878636,0.000022266817,0.0008364291,0.00006995114,0.00017367202,0.000008006919,0.000010299965,0.00008713165],"genre_scores_gemma":[0.9976073,0.00074194,0.00021895109,0.0011094387,0.000049703565,0.0000041666017,0.000058502992,0.000019822211,0.00019020373],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99902374,0.00006595627,0.00026779776,0.00037535184,0.000048799793,0.00021837662],"domain_scores_gemma":[0.9996302,0.0000071148766,0.00006938059,0.0001783009,0.000037044738,0.00007792843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025412138,0.0001607535,0.00019100196,0.000068079564,0.00003319456,0.00007731454,0.00009689187,0.0001280648,0.000015166487],"category_scores_gemma":[0.000016350208,0.00015514367,0.000029648476,0.00007744105,0.000064846485,0.000014729127,0.00005853198,0.00007540678,0.0000037163013],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025946897,0.000103789826,0.1318519,0.000018451428,0.000014652369,0.0000026495225,0.00033130226,0.0000023835194,0.86316264,0.0000046708456,0.0021718242,0.002076309],"study_design_scores_gemma":[0.0069948835,0.0003449291,0.76737696,0.00010408666,0.000018013036,0.000034434444,0.00042236916,0.00045243755,0.18218355,0.000058917638,0.041307524,0.0007018829],"about_ca_topic_score_codex":0.00037288875,"about_ca_topic_score_gemma":0.0007638459,"teacher_disagreement_score":0.6809791,"about_ca_system_score_codex":0.000022089951,"about_ca_system_score_gemma":0.000034112563,"threshold_uncertainty_score":0.6326575},"labels":[],"label_agreement":null},{"id":"W1832770806","doi":"10.1039/c5ra12805f","title":"Evaluation of imprint DESI-MS substrates for the analysis of fungal metabolites","year":2015,"lang":"en","type":"article","venue":"RSC Advances","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University; Toronto Public Health","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Characterization (materials science); In situ; Chemistry; Nanotechnology; Computational biology; Materials science; Biology; Organic chemistry","score_opus":0.07564179834276949,"score_gpt":0.35361386952579404,"score_spread":0.2779720711830246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1832770806","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922978,0.004555353,0.0026946564,0.00003106011,0.00008592905,0.0001693804,0.000026116219,0.0000028844775,0.000136774],"genre_scores_gemma":[0.9983785,0.00007220595,0.0013833074,0.000006267775,0.0000449983,0.000024580944,0.000061833634,0.0000031521017,0.000025125179],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937683,0.00007591137,0.00019978927,0.00012657228,0.00015859593,0.00006229927],"domain_scores_gemma":[0.99878657,0.000058768404,0.00015195605,0.00020589773,0.0007756376,0.000021160884],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013861533,0.000048555125,0.000115426745,0.000030549338,0.000024390054,0.000008780915,0.00010023254,0.000028471073,0.000012037476],"category_scores_gemma":[0.0009843971,0.000034641605,0.000087972905,0.00014804966,0.00005640543,0.0000057162983,0.000017331906,0.00001340846,2.798246e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041262,0.000040010545,0.021022351,0.000013185365,0.00034511928,7.777348e-9,0.000101580066,0.0034252473,0.9416271,0.00020492502,0.000012338305,0.033166904],"study_design_scores_gemma":[0.00031425123,0.000064106935,0.07421528,0.0000028887614,0.0012581563,2.5242235e-7,0.00041625247,0.007974202,0.9133011,0.0008002916,0.0015862648,0.00006691418],"about_ca_topic_score_codex":0.000023243714,"about_ca_topic_score_gemma":0.0002059563,"teacher_disagreement_score":0.05319293,"about_ca_system_score_codex":0.0000058373616,"about_ca_system_score_gemma":0.00007039812,"threshold_uncertainty_score":0.14126436},"labels":[],"label_agreement":null},{"id":"W1847728460","doi":"10.1155/2013/201516","title":"Evaluation of MRSA<i>Select</i><sup>™</sup> Chromogenic Medium for the Early Detection of Methicillin‐Resistant <i>Staphylococcus aureus</i> from Blood Cultures","year":2013,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; University of Manitoba; Shared Health","funders":"","keywords":"Staphylococcus aureus; Gram-Positive Cocci; Methicillin-resistant Staphylococcus aureus; Gram staining; Microbiology; Medicine; Bacteremia; Blood culture; Chromogenic; Staphylococcal infections; Predictive value; Micrococcaceae; Turnaround time; Biology; Antibiotics; Bacteria; Internal medicine; Antibacterial agent; Chemistry; Chromatography","score_opus":0.008984818659339462,"score_gpt":0.23933578395742056,"score_spread":0.2303509652980811,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1847728460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919079,0.006489309,0.0004902702,0.00030439804,0.0002721772,0.00033079178,0.00019422926,0.0000024314409,0.000008482391],"genre_scores_gemma":[0.99911755,0.00022573186,0.000033458982,0.00020091617,0.00032793658,0.00002161583,0.00005726439,0.000009587843,0.000005950248],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987341,0.00028489108,0.00049104576,0.00017448705,0.00013025432,0.00018522226],"domain_scores_gemma":[0.99779177,0.00016991716,0.00033598347,0.00016282033,0.0012254382,0.00031409212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008635124,0.0001154328,0.00023913338,0.00007244218,0.00012245103,0.000023346553,0.0001753878,0.00023109026,0.0001455459],"category_scores_gemma":[0.0029256842,0.00008158255,0.00016125622,0.000080634854,0.00033349264,0.000009277375,0.000018403818,0.00013692246,6.020197e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033742515,0.000039371716,0.004414212,0.00002304577,0.00031184402,5.839943e-7,0.00012861591,0.000030214576,0.990637,0.000007017686,0.00040744833,0.003966901],"study_design_scores_gemma":[0.0061203544,0.002888174,0.13905647,0.00021561749,0.0032515288,0.00007166223,0.00073460315,0.00063626765,0.8367286,0.0019023488,0.007906129,0.00048828626],"about_ca_topic_score_codex":0.0073900847,"about_ca_topic_score_gemma":0.012059823,"teacher_disagreement_score":0.15390845,"about_ca_system_score_codex":0.000032389227,"about_ca_system_score_gemma":0.0012142549,"threshold_uncertainty_score":0.9992198},"labels":[],"label_agreement":null},{"id":"W1866179658","doi":"10.1155/2006/284019","title":"An Evaluation of Extended Incubation Time with Blind Subculture of Blood Cultures in Patients with Suspect Endocarditis","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Subculture (biology); Suspect; Incubation; Endocarditis; Incubation period; Medicine; Microbiology; Psychology; Internal medicine; Biology; Criminology; Psychotherapist","score_opus":0.0029108362167556876,"score_gpt":0.21614790841322667,"score_spread":0.21323707219647098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1866179658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992449,0.00041504155,0.00001995305,0.000023240336,0.000044560693,0.00012926907,0.000070950446,0.0000011727391,0.000050895676],"genre_scores_gemma":[0.9995319,0.000012019843,0.000027635013,0.000024445788,0.00007319735,0.000001972937,0.00032071536,0.0000049678833,0.0000031212933],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99926674,0.0001515151,0.00026889605,0.00012028304,0.00008702108,0.00010557024],"domain_scores_gemma":[0.9989408,0.000011639169,0.00022157862,0.00008343756,0.000579717,0.00016277695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023906947,0.000075482465,0.00017072214,0.000091497,0.000031066276,0.000009364784,0.00006195893,0.00010454459,0.00007650751],"category_scores_gemma":[0.00023615557,0.00005386729,0.00003136062,0.00007850446,0.00018282172,0.000009553703,0.000004807889,0.000065211556,1.0594027e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018751762,0.00028418362,0.86636823,0.000022763626,0.00008937319,0.000005679184,0.00005789919,0.000077259996,0.13105293,0.000033025313,0.00011509448,0.00170602],"study_design_scores_gemma":[0.0043563405,0.0016420324,0.9888449,0.00007235825,0.0001945488,0.000105281215,0.00004549326,0.000010296503,0.0044325106,0.000119042415,0.00008070229,0.00009652494],"about_ca_topic_score_codex":0.0011021276,"about_ca_topic_score_gemma":0.01666608,"teacher_disagreement_score":0.12662041,"about_ca_system_score_codex":0.000021830383,"about_ca_system_score_gemma":0.0005808143,"threshold_uncertainty_score":0.9300064},"labels":[],"label_agreement":null},{"id":"W188676540","doi":"10.1155/2000/382415","title":"Antibiotic Susceptibility and Resistance Testing: An Overview","year":2000,"lang":"en","type":"review","venue":"Canadian Journal of Gastroenterology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Antibiotics; Serial dilution; Agar dilution; Agar; Organism; Microbiology; Minimum inhibitory concentration; Biology; Agar diffusion test; Bacteria; Dilution; Bacterial growth; Antibiotic resistance; Medicine; Antibacterial activity; Genetics","score_opus":0.0730318523952692,"score_gpt":0.31466622851640597,"score_spread":0.24163437612113675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W188676540","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.031088648,0.96807283,0.000007820944,0.000046953577,0.00034007264,0.00019689913,0.00008362134,0.000004058096,0.00015907508],"genre_scores_gemma":[0.008471726,0.9893767,0.0011431142,0.00017631972,0.00045856475,0.0000019544566,0.00012361482,0.000045832967,0.00020216484],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976698,0.00056288135,0.00085415336,0.0004309617,0.000074242125,0.00040794112],"domain_scores_gemma":[0.99802214,0.00003012616,0.0005844254,0.0004951913,0.00021176798,0.00065635174],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006440881,0.00029363713,0.0009613194,0.00020313423,0.00011029999,0.00008594467,0.00041958006,0.00030333956,0.00007277334],"category_scores_gemma":[0.00042750014,0.00027609165,0.00021565093,0.00010991299,0.00025851242,0.000011505859,0.000028922284,0.00032325333,0.000005078847],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037360407,0.00021335713,0.03436602,0.012020523,0.0006113918,0.00035160597,0.00013990024,0.000002084382,0.0008630779,0.00012036249,0.005611515,0.94532657],"study_design_scores_gemma":[0.00026661396,0.0010360152,0.0029742268,0.0018194336,0.00025854108,0.0011292354,0.00001243295,5.1164557e-7,0.0000024155331,0.00004398329,0.99225944,0.00019711869],"about_ca_topic_score_codex":0.00023617226,"about_ca_topic_score_gemma":0.040824886,"teacher_disagreement_score":0.98664796,"about_ca_system_score_codex":0.000065361746,"about_ca_system_score_gemma":0.0010636351,"threshold_uncertainty_score":0.9999691},"labels":[],"label_agreement":null},{"id":"W1904826041","doi":"10.1111/j.1469-0691.2011.03593.x","title":"Establishment of a matrix-assisted laser desorption ionization time-of-flight mass spectrometry database for rapid identification of infectious achlorophyllous green micro-algae of the genus Prototheca","year":2011,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Dendrogram; Mass spectrometry; Matrix-assisted laser desorption/ionization; Biology; Mass spectrum; Chemistry; Chromatography; Desorption; Genetic diversity; Medicine","score_opus":0.02660180520715937,"score_gpt":0.28764186600355035,"score_spread":0.26104006079639097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1904826041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991695,0.00009852216,0.0069689653,0.000014738386,0.00030334303,0.0007563805,0.00013364076,0.0000075302,0.000021873195],"genre_scores_gemma":[0.9980585,0.00016442005,0.0012659252,0.000015198971,0.000060805756,0.000028420158,0.00032269183,0.000010196984,0.0000738183],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984252,0.0002721415,0.0009008476,0.00027661165,0.000029260975,0.00009594691],"domain_scores_gemma":[0.99826,0.00007034479,0.0009364657,0.00034358885,0.00036553908,0.000024031067],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008521162,0.00010320319,0.00024911677,0.00007994195,0.00005517646,0.0000045428023,0.00010548333,0.00025517234,0.00003531962],"category_scores_gemma":[0.00051129045,0.000085927364,0.00014770943,0.00019118155,0.00030611476,0.000014834223,0.000064475644,0.00007540044,0.0000012798477],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035520637,0.00032583743,0.044545107,0.0001588631,0.000067102665,1.9559925e-8,0.000066185756,0.0000014727261,0.9517283,0.000019874466,0.00003408099,0.0026979826],"study_design_scores_gemma":[0.00065193773,0.00060080184,0.10765889,0.000035327725,0.00006881582,0.000008038575,0.00001104747,0.000029552068,0.89059645,0.00006873641,0.00019749172,0.0000729034],"about_ca_topic_score_codex":0.00008411328,"about_ca_topic_score_gemma":0.000026837928,"teacher_disagreement_score":0.06311379,"about_ca_system_score_codex":0.000011458252,"about_ca_system_score_gemma":0.000048497943,"threshold_uncertainty_score":0.3504016},"labels":[],"label_agreement":null},{"id":"W1905147122","doi":"10.1111/j.1537-2995.2011.03530.x","title":"Evaluation of the sterility testing process of hematopoietic stem cells at Canadian Blood Services","year":2012,"lang":"en","type":"article","venue":"Transfusion","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Blood Services","funders":"Industry Canada; Canadian Blood Services","keywords":"Haematopoiesis; Sterility; Stem cell; Medicine; Process (computing); Blood testing; Biology; Internal medicine; Computer science; Genetics","score_opus":0.03320197677576975,"score_gpt":0.26700382593953276,"score_spread":0.233801849163763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1905147122","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900275,0.00012428452,0.0000077218765,0.000022255697,0.00013931649,0.00028689692,0.000018854018,0.0000038132116,0.00039410245],"genre_scores_gemma":[0.9998546,0.0000043448954,0.000037509042,0.0000148547815,0.000031692132,0.000007357566,0.000011387291,0.0000063696098,0.000031872783],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991697,0.00014608896,0.00021495638,0.00013096449,0.00021490507,0.00012337031],"domain_scores_gemma":[0.99922526,0.000010995318,0.00009630021,0.00026531162,0.0003435153,0.000058635476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009557277,0.00006482535,0.00007989818,0.000016467755,0.000080203485,0.0000049036926,0.00012460651,0.00006921891,0.000045658144],"category_scores_gemma":[0.000030644864,0.000051648152,0.000039821123,0.0001018099,0.000034978708,0.0000058009396,0.000022010641,0.00002913192,0.0000013085382],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010711084,0.00004911822,0.0513759,0.00016736369,0.000008175568,1.1969119e-8,0.000792461,0.000023161518,0.94626534,0.0000013272838,0.0000014596899,0.0013049663],"study_design_scores_gemma":[0.00020172825,0.000024087525,0.10047559,0.000042245312,0.00008703607,0.0000029675411,0.0002407286,0.00016642587,0.89867115,0.0000103680395,0.000026083331,0.00005161907],"about_ca_topic_score_codex":0.0040735956,"about_ca_topic_score_gemma":0.023447147,"teacher_disagreement_score":0.049099687,"about_ca_system_score_codex":0.000018799448,"about_ca_system_score_gemma":0.00012298304,"threshold_uncertainty_score":0.99437237},"labels":[],"label_agreement":null},{"id":"W1911006843","doi":"10.1111/j.1469-0691.2011.03587.x","title":"Risk factors for recurrence and death after bacteraemia: a population-based study","year":2011,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary; Alberta Health Services","funders":"Astellas Pharma; Gilead Sciences","keywords":"Medicine; Hazard ratio; Proportional hazards model; Comorbidity; Bacteremia; Internal medicine; Population; Confidence interval; Risk factor; Multivariate analysis; Genitourinary system; Surgery; Biology","score_opus":0.0532204180924167,"score_gpt":0.3295206714485408,"score_spread":0.2763002533561241,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1911006843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985232,0.000034242486,0.0006866417,0.000007253895,0.00036560363,0.00032726047,0.000034276934,0.000012954947,0.000008574172],"genre_scores_gemma":[0.99923545,0.000031670235,0.00034793437,0.00007027301,0.00007925772,0.000032809035,0.00017540228,0.000006039325,0.000021157764],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99907064,0.00020109852,0.00027894115,0.00034594594,0.000007110248,0.00009623772],"domain_scores_gemma":[0.99953765,0.000107916756,0.000111721856,0.00013655721,0.00006155113,0.000044610468],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041616985,0.00009180819,0.00012896204,0.000023492661,0.00010735201,0.000013658816,0.000028780903,0.00020892832,0.00002036716],"category_scores_gemma":[0.00074593513,0.000079177786,0.000051767944,0.000023868906,0.000047771624,0.0000057456687,0.000030118912,0.000095286334,0.0000014543452],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013418614,0.00016278628,0.9855392,0.000007506747,0.000020520616,5.680449e-8,0.00004297418,1.3341669e-7,0.012663842,0.0000046473824,0.000013593299,0.0014105584],"study_design_scores_gemma":[0.0004987323,0.00083932927,0.9966445,0.000005024812,0.000037986778,0.000001652287,0.000018636794,0.000011828659,0.001308742,0.000057400743,0.00048118609,0.00009495669],"about_ca_topic_score_codex":0.00015675723,"about_ca_topic_score_gemma":0.00029863554,"teacher_disagreement_score":0.0113551,"about_ca_system_score_codex":0.0000043574278,"about_ca_system_score_gemma":0.000013434446,"threshold_uncertainty_score":0.32287765},"labels":[],"label_agreement":null},{"id":"W1921698342","doi":"10.1186/s12866-015-0557-7","title":"The development and application of a molecular community profiling strategy to identify polymicrobial bacterial DNA in the whole blood of septic patients","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Calgary","funders":"Alberta Innovates - Health Solutions","keywords":"Biology; Sepsis; DNA extraction; Microbiology; Whole blood; Blood culture; DNA profiling; Bacteria; DNA; Lysis; Immunology; Polymerase chain reaction; Gene; Genetics; Antibiotics","score_opus":0.026159123696971535,"score_gpt":0.28275292055850515,"score_spread":0.2565937968615336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1921698342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990817,0.00004240256,0.00031155825,0.000023651271,0.00006909839,0.00041447702,0.000026855792,0.0000028720624,0.000027392303],"genre_scores_gemma":[0.998619,9.857367e-7,0.0009188829,0.000035439545,0.00001884781,0.0000261375,0.00036388982,0.0000065035642,0.000010269518],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988148,0.0004748523,0.00037923004,0.00016277496,0.000034462468,0.0001338506],"domain_scores_gemma":[0.99930465,0.000045194476,0.00015199507,0.00032768812,0.000141023,0.000029423716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008852016,0.00008864495,0.000121964156,0.000029379597,0.000076596225,0.00002001204,0.0002848229,0.000081540406,7.4031146e-7],"category_scores_gemma":[0.00024918397,0.00006494678,0.000026413047,0.000083095954,0.00011699712,0.000003159595,0.00012490885,0.00007534536,0.0000021053263],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000797926,0.00012571414,0.011766102,0.000023185325,0.000012161878,5.1860606e-8,0.00047812297,0.000005866226,0.98691875,0.000033406403,0.000021798547,0.0005350583],"study_design_scores_gemma":[0.00068092707,0.00021559147,0.037967995,0.000009156669,0.000011616289,0.000005486858,0.0006805361,0.0000024979063,0.95973724,0.000030022571,0.00057631003,0.000082630846],"about_ca_topic_score_codex":0.00007727429,"about_ca_topic_score_gemma":0.0008549336,"teacher_disagreement_score":0.02718151,"about_ca_system_score_codex":0.000009701445,"about_ca_system_score_gemma":0.000117029536,"threshold_uncertainty_score":0.26484528},"labels":[],"label_agreement":null},{"id":"W1952269062","doi":"10.1111/j.1469-0691.2007.01715.x","title":"Population-based laboratory surveillance for tribe Proteeae isolates in a large Canadian health region","year":2007,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary; Alberta Health Services","funders":"","keywords":"Providencia; Proteus mirabilis; Incidence (geometry); Population; Epidemiology; Medicine; Veterinary medicine; Biology; Microbiology; Proteus; Staphylococcus aureus; Internal medicine; Environmental health; Bacteria","score_opus":0.024109057922264688,"score_gpt":0.3350002175124858,"score_spread":0.3108911595902211,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1952269062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99567825,0.00012421061,0.0028678405,0.0005062109,0.00034251757,0.00040674408,0.00005246935,0.0000117937625,0.0000099687795],"genre_scores_gemma":[0.99760574,0.000040731036,0.00019192747,0.0011422718,0.00013955432,0.000012755202,0.00083459774,0.00000664658,0.000025747113],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99892217,0.000185394,0.00039152347,0.00027879587,0.0000060604802,0.00021604067],"domain_scores_gemma":[0.9994995,0.00009304766,0.0001197032,0.00011952023,0.00008398188,0.0000842594],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018376983,0.0000724668,0.00014614745,0.00006315316,0.000119451,0.000010243261,0.00003067995,0.0002694205,0.0000042037773],"category_scores_gemma":[0.0008415898,0.000074283205,0.000042791347,0.00008340695,0.00004194298,0.0000041079907,0.0000092364735,0.0000978924,0.0000015990763],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010606601,0.000056167573,0.95529366,0.000019015944,0.000005045325,1.3219608e-7,0.000006942167,0.0000018126877,0.04224766,0.000035948244,0.0004027933,0.0018247791],"study_design_scores_gemma":[0.0007781263,0.0002961389,0.9736613,0.000011772723,0.0000015251031,0.0000029665916,0.00000482323,0.000040982122,0.001085167,0.00003074589,0.023995116,0.00009130378],"about_ca_topic_score_codex":0.0047364,"about_ca_topic_score_gemma":0.2527508,"teacher_disagreement_score":0.2480144,"about_ca_system_score_codex":0.000036115413,"about_ca_system_score_gemma":0.00016004572,"threshold_uncertainty_score":0.7608845},"labels":[],"label_agreement":null},{"id":"W1964161336","doi":"10.1016/j.mimet.2012.03.012","title":"High-throughput species identification of enterococci using pyrosequencing","year":2012,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary; Agriculture and Agri-Food Canada","funders":"","keywords":"Pyrosequencing; Hypervariable region; Identification (biology); Biology; Enterococcus; Computational biology; Throughput; Range (aeronautics); Genetics; Gene; Ecology; Computer science; Bacteria; Engineering","score_opus":0.0761597385088288,"score_gpt":0.3797385374901759,"score_spread":0.3035787989813471,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964161336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8923328,0.00051162473,0.10628088,0.00003673945,0.0007418723,0.00006362817,0.0000087412245,0.0000035088556,0.000020191323],"genre_scores_gemma":[0.8006699,0.00006297658,0.19873188,0.000044441513,0.0004113189,5.3152587e-7,0.000010625118,0.0000065414292,0.00006178438],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99823374,0.0005590545,0.00082702923,0.00013700218,0.00006153596,0.00018163273],"domain_scores_gemma":[0.9985527,0.00007472688,0.0008319445,0.0001950238,0.00027691678,0.00006871634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026802314,0.000107711974,0.0002690419,0.000056053497,0.0000514707,0.000021487958,0.00020748172,0.00015169292,0.00005257709],"category_scores_gemma":[0.0012345298,0.000082621555,0.00016877384,0.00009195107,0.00011481249,0.00001743561,0.00008564205,0.000120225675,0.0000018109597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043171025,0.000090074216,0.00572227,0.00001364516,0.000034029625,2.5896233e-7,0.000059983795,0.000023184219,0.99198484,0.00008913545,0.000070238566,0.0018691699],"study_design_scores_gemma":[0.00019193417,0.00011631267,0.029807635,0.000018630859,0.000031220694,0.000086505235,0.0001210685,0.000006536863,0.96715003,0.000108473476,0.002275447,0.0000861966],"about_ca_topic_score_codex":0.0000056588533,"about_ca_topic_score_gemma":5.296911e-7,"teacher_disagreement_score":0.092451006,"about_ca_system_score_codex":0.000034733,"about_ca_system_score_gemma":0.000033161563,"threshold_uncertainty_score":0.33692092},"labels":[],"label_agreement":null},{"id":"W1964843122","doi":"10.1128/jcm.05395-11","title":"First Comprehensive Evaluation of the M.I.C. Evaluator Device Compared to Etest and CLSI Broth Microdilution for MIC Testing of Aerobic Gram-Positive and Gram-Negative Bacterial Species","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Etest; Broth microdilution; Microbiology; Acinetobacter; Biology; Staphylococcus aureus; Antimicrobial; Bacteria; Minimum inhibitory concentration; Antibiotics","score_opus":0.1415015006005301,"score_gpt":0.39085240584180647,"score_spread":0.24935090524127637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964843122","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978855,0.00030930614,0.00017062481,0.00025918186,0.000696658,0.0005760213,0.00009327147,0.0000015771911,0.000007856195],"genre_scores_gemma":[0.9945333,0.00002538207,0.0048710695,0.00012954911,0.0003861343,0.000005640995,0.000031742256,0.000008806796,0.000008395896],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99788487,0.00060227857,0.0010782082,0.00019789248,0.000070849426,0.00016590275],"domain_scores_gemma":[0.9958497,0.0010072374,0.0011614285,0.00016077695,0.0017337287,0.00008711361],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00230786,0.00012670491,0.00045500745,0.00004444201,0.00008800023,0.0000143250745,0.00014534891,0.0001723066,0.00000910236],"category_scores_gemma":[0.006441089,0.000095657386,0.00013731343,0.00008910187,0.0003653321,0.000013693856,0.00011663649,0.00012423724,4.771172e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046335396,0.000119391254,0.035414778,0.00004155111,0.00008374733,2.5272348e-8,0.00018193437,0.00001517103,0.9624147,0.000010834395,0.00019598186,0.0010585574],"study_design_scores_gemma":[0.0024054593,0.0008982883,0.6520974,0.00015371556,0.0002615583,0.00006510687,0.0002250496,0.000081805614,0.3417342,0.00006406375,0.0018845244,0.00012881494],"about_ca_topic_score_codex":0.000020060115,"about_ca_topic_score_gemma":0.00008861049,"teacher_disagreement_score":0.62068045,"about_ca_system_score_codex":0.000022469138,"about_ca_system_score_gemma":0.00014273926,"threshold_uncertainty_score":0.77110505},"labels":[],"label_agreement":null},{"id":"W1965466322","doi":"10.1111/j.1600-0463.2005.apm_217.x","title":"Phene Plate (PhP) biochemical fingerprinting","year":2005,"lang":"en","type":"article","venue":"Apmis","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Engineering Link (Canada)","funders":"","keywords":"Chemistry","score_opus":0.012436794807069296,"score_gpt":0.25171630430914504,"score_spread":0.23927950950207574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965466322","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99535,0.000114076225,0.00060089177,0.0005289745,0.0000962929,0.000058245038,0.0000035251176,0.000033585347,0.0032144194],"genre_scores_gemma":[0.9931863,0.000015222076,0.0044679437,0.0003534386,0.0005217404,0.000005402494,0.00006431732,0.00001269692,0.0013729178],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993236,0.00001999819,0.00016791266,0.0002649292,0.000060412567,0.00016315248],"domain_scores_gemma":[0.9995641,0.000010120296,0.00004839887,0.00027040427,0.000046900786,0.00006006023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001484248,0.00008393455,0.00007141279,0.00001656361,0.00006400968,0.000035254103,0.00012783159,0.000089356545,0.00014841759],"category_scores_gemma":[0.0002222759,0.000088466884,0.000054652704,0.000050129576,0.00003275787,0.0000033518952,0.00008026707,0.00005768525,0.0001121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009313555,0.000027304031,0.0012520257,0.000004979936,0.0000086673635,2.8813713e-7,0.000032766166,0.0000057024577,0.9853421,0.0000572044,0.002634965,0.010624703],"study_design_scores_gemma":[0.00023614657,0.000021218428,0.004974076,0.000008572239,0.0000068649574,0.000008393428,0.000024336054,0.00022684078,0.90797496,0.00004496223,0.08631132,0.00016232491],"about_ca_topic_score_codex":0.000013003784,"about_ca_topic_score_gemma":0.0000106670705,"teacher_disagreement_score":0.08367635,"about_ca_system_score_codex":0.000010338785,"about_ca_system_score_gemma":0.00001999377,"threshold_uncertainty_score":0.36075747},"labels":[],"label_agreement":null},{"id":"W1965835661","doi":"10.1111/j.1439-0329.2009.00597.x","title":"Rapid differentiation of <i>Ophiostoma ulmi</i> and <i>Ophiostoma novo‐ulmi</i> isolates by matrix‐assisted‐laser‐desorption/ionization time‐of‐flight/time‐of‐flight mass spectrometry","year":2009,"lang":"en","type":"article","venue":"Forest Pathology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Forest Research Institute; University of Toronto","funders":"","keywords":"Biology; Dutch elm disease; Ophiostoma; Mass spectrometry; Botany; Matrix (chemical analysis); Chromatography; Chemistry; Fungus","score_opus":0.0051486003629804275,"score_gpt":0.21492810987332833,"score_spread":0.2097795095103479,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965835661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99530923,0.00084476767,0.0027269567,0.00022931772,0.00016109632,0.00031259318,0.00017503244,0.000035898964,0.00020512848],"genre_scores_gemma":[0.9958045,0.00028693627,0.0020246,0.00009180423,0.0001051049,0.00000821987,0.0012167403,0.000029138582,0.0004329414],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979826,0.00020542661,0.0008297508,0.0005376125,0.00016179608,0.00028280242],"domain_scores_gemma":[0.9983537,0.0000613011,0.0006643688,0.0005227579,0.00030719826,0.00009063664],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032084496,0.00026933206,0.00047565778,0.00020391832,0.0000896727,0.000024782854,0.0002336794,0.00039289767,0.00010182381],"category_scores_gemma":[0.00025607043,0.00027325572,0.00014036421,0.00036519096,0.00020949339,0.00002643477,0.0000768272,0.00011221438,0.00001822316],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017818912,0.00026656495,0.009723885,0.000073836236,0.000034337518,0.0000025084819,0.0000791805,0.000009954382,0.98811567,0.00013000723,0.00055352924,0.0008323679],"study_design_scores_gemma":[0.0011103369,0.0012070147,0.13622433,0.000054523472,0.00009415633,0.00008075864,0.000026600026,0.0004914984,0.85949296,0.00043449274,0.00046803738,0.00031527443],"about_ca_topic_score_codex":0.0000064512988,"about_ca_topic_score_gemma":0.000008916148,"teacher_disagreement_score":0.12862267,"about_ca_system_score_codex":0.000017553946,"about_ca_system_score_gemma":0.000045144883,"threshold_uncertainty_score":0.999972},"labels":[],"label_agreement":null},{"id":"W1966030018","doi":"10.1016/j.ccm.2008.06.004","title":"Antimicrobial Management of Sepsis and Septic Shock","year":2008,"lang":"en","type":"review","venue":"Clinics in Chest Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Septic shock; Sepsis; Antibiotics; Intensive care medicine; Antimicrobial; Pseudomonas aeruginosa; Shock (circulatory); Antibiotic therapy; Antibiotic resistance; Surgery; Internal medicine; Bacteria; Microbiology; Biology","score_opus":0.07491384669995477,"score_gpt":0.38678211790898237,"score_spread":0.3118682712090276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966030018","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004287878,0.99412113,0.000023735116,0.00004534698,0.00041729608,0.00039960849,0.00001435986,0.000007117263,0.0006835486],"genre_scores_gemma":[0.0007272215,0.99717945,0.00083435583,0.0000628828,0.00024933877,0.000013563907,0.00032790878,0.00002676333,0.0005785095],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99831295,0.00009688914,0.00090589584,0.00045188062,0.000088670604,0.00014368487],"domain_scores_gemma":[0.99900734,0.00007438795,0.00033859737,0.00047212624,0.000049501832,0.00005806822],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004041785,0.00021707741,0.0008701776,0.00008794005,0.000025446287,0.0000047631793,0.00020491863,0.0003070051,0.000021518112],"category_scores_gemma":[0.00019868124,0.0001862417,0.00012617857,0.00016034924,0.00024110859,0.0000014865557,0.000160026,0.00017803728,0.0000054937564],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001394678,0.00014408541,0.0004045884,0.02221212,0.00017645191,0.000025279218,0.000074396215,4.52045e-7,0.000417891,0.000031739346,0.0029624172,0.9735366],"study_design_scores_gemma":[0.0005454069,0.00010524593,0.00034113647,0.009048186,0.00023753401,0.000049140483,0.00003688127,0.0000042011284,0.000022204536,0.000012368565,0.9893792,0.00021847249],"about_ca_topic_score_codex":0.000006894159,"about_ca_topic_score_gemma":0.0000082413435,"teacher_disagreement_score":0.9864168,"about_ca_system_score_codex":0.000017351242,"about_ca_system_score_gemma":0.00006579292,"threshold_uncertainty_score":0.7594716},"labels":[],"label_agreement":null},{"id":"W1967499314","doi":"10.1007/s00769-008-0421-7","title":"External quality assessment in microbiology: comparison of results from Belgian and Canadian laboratories with regard to their ability to identify Streptococcus pyogenes","year":2008,"lang":"en","type":"article","venue":"Accreditation and Quality Assurance","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Clinical microbiology; External quality assessment; Streptococcus pyogenes; Viridans streptococci; Streptococcus; Microbiology; Medicine; Throat; Medical physics; Biology; Pathology; Surgery; Staphylococcus aureus; Bacteria","score_opus":0.05474549356872136,"score_gpt":0.3630003531813596,"score_spread":0.3082548596126382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967499314","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99702126,0.000085586544,0.0005118803,0.0008954489,0.000110735404,0.00034405664,0.0009865515,0.00000881246,0.000035690002],"genre_scores_gemma":[0.9958559,0.000016181564,0.0034871828,0.00019579985,0.000057980673,0.000023837369,0.00033575532,0.000006884079,0.000020476675],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99827063,0.00039230706,0.00059711386,0.00048428276,0.00009004134,0.00016563661],"domain_scores_gemma":[0.99881107,0.00016398674,0.0001962493,0.00033834303,0.00031969196,0.00017067025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091181655,0.00013234466,0.00027498894,0.00005693534,0.000114673254,0.00003850783,0.00011269587,0.0001057954,0.0000043800496],"category_scores_gemma":[0.0009301459,0.00012324266,0.00002072097,0.00016931744,0.00012917405,0.000018937148,0.000044716435,0.00008333304,9.349827e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015837127,0.000031516924,0.46647936,0.00001794631,0.000008124331,3.1676365e-7,0.0014247705,0.000018336696,0.5311069,0.000031174568,0.00009138826,0.00063180964],"study_design_scores_gemma":[0.0005563029,0.000111207075,0.94449043,0.000032872016,0.0000031906795,8.135798e-7,0.001381925,0.000005559656,0.05244331,0.000031122378,0.00079491583,0.00014836255],"about_ca_topic_score_codex":0.035697125,"about_ca_topic_score_gemma":0.34374234,"teacher_disagreement_score":0.4786636,"about_ca_system_score_codex":0.000034340894,"about_ca_system_score_gemma":0.00024839857,"threshold_uncertainty_score":0.9707242},"labels":[],"label_agreement":null},{"id":"W1967859542","doi":"10.1002/cem.1115","title":"Multivariate curve resolution of mixed bacterial DNA sequence spectra: identification and quantification of bacteria in undefined mixture samples","year":2008,"lang":"en","type":"article","venue":"Journal of Chemometrics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Multivariate statistics; Partial least squares regression; Calibration; Least-squares function approximation; Statistics; Multivariate analysis; Identification (biology); Mathematics; Biological system; Biology; Ecology","score_opus":0.06034472756730446,"score_gpt":0.2915426234654613,"score_spread":0.2311978958981568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967859542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948213,0.0001826782,0.00439741,0.00011119922,0.00032588674,0.00010922803,0.000037224214,0.000002769514,0.000012280884],"genre_scores_gemma":[0.9941513,0.00039469803,0.005189446,0.0000044169255,0.00011460091,0.0000012157233,0.00010198772,0.000010112263,0.00003220817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99838626,0.00013795204,0.000965313,0.00019444381,0.00020101779,0.00011499312],"domain_scores_gemma":[0.9979282,0.00007613926,0.0011490212,0.00023654032,0.00055829674,0.00005181903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009893519,0.000107691085,0.0002881396,0.0004091828,0.000036875,0.000018830511,0.00016581792,0.00015819675,0.000010733682],"category_scores_gemma":[0.0027338478,0.000107088395,0.000079555924,0.00067502196,0.00012044465,0.000030687726,0.00003712049,0.00010332435,4.6391918e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020652666,0.00013409014,0.018732345,0.000062676576,0.000020376758,0.0000010027323,0.000115174385,0.0000127864005,0.9799618,0.00006509137,0.00006192099,0.00062618003],"study_design_scores_gemma":[0.00048811245,0.000091065725,0.42485157,0.000026623407,0.000013199925,0.000032604898,0.00003474477,0.000046487457,0.57413095,0.00006673363,0.00015264042,0.000065301254],"about_ca_topic_score_codex":0.000042574942,"about_ca_topic_score_gemma":0.000025992884,"teacher_disagreement_score":0.4061192,"about_ca_system_score_codex":0.000038892216,"about_ca_system_score_gemma":0.00012178274,"threshold_uncertainty_score":0.43669382},"labels":[],"label_agreement":null},{"id":"W1970174238","doi":"10.1007/s00769-014-1082-3","title":"Performance of Canadian clinical laboratories processing throat culture proficiency testing surveys","year":2014,"lang":"en","type":"article","venue":"Accreditation and Quality Assurance","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; University of British Columbia Hospital","funders":"University of British Columbia","keywords":"Streptococcus pyogenes; Pharyngitis; Throat; Throat culture; Streptococcus; Pathogen; Clinical microbiology; Medicine; Microbiology; Biology; Surgery; Internal medicine; Bacteria; Staphylococcus aureus","score_opus":0.07274539070457586,"score_gpt":0.3449978617734287,"score_spread":0.27225247106885286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970174238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99764234,0.00008256265,0.00067380874,0.00014406058,0.00019768604,0.00009919398,0.000019829322,0.000013634186,0.0011268692],"genre_scores_gemma":[0.99646974,0.000044255918,0.0029628982,0.000108094995,0.00020190823,0.000005741014,0.00008682898,0.0000064353717,0.00011407873],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986794,0.00043212075,0.0004018154,0.00025459388,0.000100317564,0.00013177848],"domain_scores_gemma":[0.99886847,0.00008592821,0.0002124676,0.0001717153,0.00057717896,0.00008425198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027353049,0.00008323744,0.00013992144,0.000041917934,0.00016046387,0.000044419987,0.00009315282,0.000104330305,0.000002683136],"category_scores_gemma":[0.004071665,0.000078779485,0.000021313132,0.0003181008,0.00012327253,0.000023630357,0.000017837672,0.000070450566,0.0000017178683],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009826906,0.000021882815,0.85800743,0.00013618343,0.0000046066148,3.2862943e-8,0.00024339829,0.000007469349,0.12268273,0.00016245629,0.0001964018,0.018527586],"study_design_scores_gemma":[0.00019227814,0.00011612989,0.9895389,0.000033253957,0.0000044812386,7.4559745e-7,0.00021202592,0.00048085983,0.006387074,0.000017447082,0.0029034656,0.00011335468],"about_ca_topic_score_codex":0.00198699,"about_ca_topic_score_gemma":0.008140862,"teacher_disagreement_score":0.13153145,"about_ca_system_score_codex":0.0000054467464,"about_ca_system_score_gemma":0.0002057823,"threshold_uncertainty_score":0.48744577},"labels":[],"label_agreement":null},{"id":"W1973150788","doi":"10.1016/j.diagmicrobio.2015.04.005","title":"Assay for estimating total bacterial load: relative qPCR normalisation of bacterial load with associated clinical implications","year":2015,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Jewish General Hospital; McGill University","keywords":"16S ribosomal RNA; Biology; Amplicon; Real-time polymerase chain reaction; Bacteria; Microbiology; Enumeration; Computational biology; Polymerase chain reaction; Gene; Genetics","score_opus":0.022009203021362448,"score_gpt":0.2891835237600053,"score_spread":0.26717432073864283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973150788","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99118733,0.00006202477,0.006723754,0.00015692842,0.000679485,0.00053815416,0.00053195556,0.000027835726,0.000092514696],"genre_scores_gemma":[0.99532783,0.000011182264,0.0012471923,0.00008044932,0.00035853195,0.00008648541,0.0028162308,0.000016174192,0.00005593247],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99860257,0.00030836623,0.00045589195,0.00039631466,0.000043482734,0.00019337509],"domain_scores_gemma":[0.9980275,0.000583003,0.0003280763,0.00023131593,0.0006717795,0.00015832753],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.00086302665,0.00015972172,0.0002404834,0.00002676988,0.00012953106,0.000033153286,0.0000742577,0.00021272557,0.000024824421],"category_scores_gemma":[0.016298646,0.00014818822,0.000082997336,0.0000667414,0.00025016468,0.000021862743,0.000064301545,0.000084668805,0.000003798185],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019320445,0.0011056516,0.38982594,0.00009066716,0.00040688523,0.0000020770178,0.0003853336,0.000111670124,0.5978169,0.0009512547,0.004603165,0.0027684285],"study_design_scores_gemma":[0.02379649,0.0068926634,0.9287339,0.00032357752,0.0014621111,0.0001583648,0.00020887685,0.0012717551,0.020508511,0.0037852796,0.010896769,0.0019616892],"about_ca_topic_score_codex":0.000036194,"about_ca_topic_score_gemma":0.00014686247,"teacher_disagreement_score":0.57730836,"about_ca_system_score_codex":0.000058603026,"about_ca_system_score_gemma":0.00056623,"threshold_uncertainty_score":0.99198747},"labels":[],"label_agreement":null},{"id":"W1973509593","doi":"10.1007/s15010-012-0389-4","title":"Population-based assessment of the incidence, risk factors, and outcomes of anaerobic bloodstream infections","year":2013,"lang":"en","type":"article","venue":"Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary; Alberta Health Services","funders":"","keywords":"Medicine; Bacteremia; Population; Internal medicine; Incidence (geometry); Risk factor; Biology; Antibiotics; Microbiology; Environmental health","score_opus":0.009681782735405264,"score_gpt":0.2733708649665374,"score_spread":0.26368908223113213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973509593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990631,0.0000042760203,0.0005057579,0.000023943963,0.00015965941,0.00017768402,0.00000968709,0.000008494324,0.00004741066],"genre_scores_gemma":[0.9996796,0.000008051929,0.00021090178,0.00000998823,0.000015734706,0.000011622952,0.000038162445,0.000004380819,0.000021553808],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994918,0.00008762182,0.00019491246,0.00011391275,0.000059957325,0.000051792533],"domain_scores_gemma":[0.999442,0.000036065914,0.00020330395,0.0002010176,0.000098619705,0.00001903239],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011029777,0.00006264601,0.00008934609,0.000035549692,0.000079691155,0.000014741278,0.00003561452,0.00006176456,0.000028451572],"category_scores_gemma":[0.00029134192,0.000044740595,0.00005938558,0.000093669085,0.000039461975,0.0000079471065,0.000027338283,0.000046142228,3.9116406e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[3.6718606e-7,0.00005607266,0.84302175,0.00000860316,0.000013934963,1.8857702e-9,0.0000066797415,0.000143561,0.15647276,0.00002147243,0.000009909935,0.00024489363],"study_design_scores_gemma":[0.00011268982,0.000059364582,0.9684947,0.000006293965,0.000020402751,3.0228202e-7,0.000008580121,0.0002583466,0.030916829,0.000058668717,0.00002218771,0.000041638166],"about_ca_topic_score_codex":0.011071023,"about_ca_topic_score_gemma":0.0013349125,"teacher_disagreement_score":0.12555592,"about_ca_system_score_codex":0.000010993229,"about_ca_system_score_gemma":0.000030058192,"threshold_uncertainty_score":0.99551433},"labels":[],"label_agreement":null},{"id":"W1973637952","doi":"10.1007/s10096-007-0406-1","title":"Leptotrichia endocarditis: Report of two cases from the International Collaboration on Endocarditis (ICE) database and review of previous cases","year":2007,"lang":"en","type":"review","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"","keywords":"Endocarditis; Genitourinary system; Medical microbiology; Medicine; Microbiology; Biology; Internal medicine","score_opus":0.06765891819506151,"score_gpt":0.40104527847047783,"score_spread":0.33338636027541635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973637952","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03163718,0.9628185,0.000048689828,0.000042148615,0.0018525069,0.00046766852,0.002824289,0.000008764972,0.0003002404],"genre_scores_gemma":[0.023848692,0.9714736,0.00011255355,0.00040171485,0.0016173143,0.000004388857,0.002487716,0.000035893314,0.000018131663],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9930194,0.002936373,0.0032863235,0.00047504384,0.0001299392,0.00015289245],"domain_scores_gemma":[0.99167114,0.0023007388,0.0044310573,0.00063671573,0.0008293344,0.00013099791],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0027920448,0.00031228596,0.0015584371,0.0001007723,0.00007795031,0.000035502668,0.00045725895,0.00011501466,0.000067349974],"category_scores_gemma":[0.017850902,0.00022060925,0.00092928787,0.00016293161,0.00045646922,0.000015290705,0.00023374164,0.00038705755,0.0000064784667],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031472108,0.0013091184,0.011392127,0.009398138,0.0044878838,0.0028402722,0.000029310711,0.0000027820906,0.0050755683,0.000035469715,0.03939093,0.9257237],"study_design_scores_gemma":[0.00085441105,0.00096016086,0.0015680356,0.01802056,0.00215581,0.0074322047,0.000016418682,8.5269924e-8,0.000125402,0.000005125606,0.9686192,0.00024254133],"about_ca_topic_score_codex":0.000024172406,"about_ca_topic_score_gemma":0.000023902034,"teacher_disagreement_score":0.9292283,"about_ca_system_score_codex":0.000025572608,"about_ca_system_score_gemma":0.0005281018,"threshold_uncertainty_score":0.9904221},"labels":[],"label_agreement":null},{"id":"W1974269552","doi":"10.1016/j.ijid.2008.05.717","title":"Detection of Heterogeneously Vancomycin Intermediate Resistant (hVISA) Staphylococcus aureus from Blood Stream Infections (BSI)","year":2008,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Boniface Hospital","funders":"","keywords":"Teicoplanin; Vancomycin; Staphylococcus aureus; Microbiology; Medicine; Agar plate; Biology; Bacteria","score_opus":0.008903531874935266,"score_gpt":0.24711872546427627,"score_spread":0.238215193589341,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974269552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99639356,0.00044330338,0.0013370655,0.000027107015,0.0014290666,0.000085672036,0.00018819145,0.00001960611,0.0000764005],"genre_scores_gemma":[0.998558,0.00038268458,0.00006586067,0.000055890043,0.00080776756,0.000006266424,0.00007635536,0.000017592214,0.000029592866],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99864125,0.00011223179,0.0006284082,0.00020081676,0.0002946703,0.00012262691],"domain_scores_gemma":[0.99804795,0.00006764633,0.0006240297,0.00021084592,0.0009266938,0.00012282787],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010360184,0.00014652315,0.00019952838,0.00019363507,0.00008881434,0.00004126861,0.00025683024,0.00006265916,0.00006060518],"category_scores_gemma":[0.00071266224,0.00014375352,0.0002733103,0.000092188995,0.000115453244,0.000027758391,0.00007498392,0.00011561884,0.0000041306266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000247307,0.000672999,0.19733705,0.0000089400355,0.00044652217,0.00004008685,0.00006897742,0.00018731922,0.79947805,0.000005214024,0.00013141561,0.0013761228],"study_design_scores_gemma":[0.0023654196,0.0012599531,0.49434763,0.00011703435,0.00020612062,0.00028909263,0.00008554499,0.000042436866,0.49931857,0.00038129787,0.0013067843,0.00028011503],"about_ca_topic_score_codex":0.00022765948,"about_ca_topic_score_gemma":0.00049716415,"teacher_disagreement_score":0.30015948,"about_ca_system_score_codex":0.000055166754,"about_ca_system_score_gemma":0.0001613009,"threshold_uncertainty_score":0.5862099},"labels":[],"label_agreement":null},{"id":"W1978087451","doi":"10.1016/j.anaerobe.2011.05.014","title":"Update on resistance of Bacteroides fragilis group and related species with special attention to carbapenems 2006–2009","year":2011,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Johnson and Johnson; Canadian Food Inspection Agency","keywords":"Cefoxitin; Bacteroides fragilis; Imipenem; Microbiology; Meropenem; Tigecycline; Ertapenem; Moxifloxacin; Clindamycin; Piperacillin; Biology; Doripenem; Tazobactam; Agar dilution; Antibiotic resistance; Antibiotics; Medicine; Minimum inhibitory concentration; Bacteria","score_opus":0.013416035498623826,"score_gpt":0.20774981857253888,"score_spread":0.19433378307391505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978087451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99375474,0.000042921838,0.00005473187,0.000087313085,0.00012137387,0.00012450326,0.000025822674,0.000009923486,0.0057786712],"genre_scores_gemma":[0.99591213,0.000048746864,0.0012258544,0.00009833916,0.00013843681,0.0000045887386,0.00008954056,0.000011602821,0.0024707601],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992797,0.000039229242,0.00020238713,0.00028183762,0.00007589366,0.00012096614],"domain_scores_gemma":[0.9995088,0.0000051708666,0.00009183291,0.00026674362,0.0000705739,0.00005687005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012617378,0.0000984972,0.00011721978,0.000039200462,0.00005140016,0.000018821054,0.00008828773,0.00006790016,0.000116296294],"category_scores_gemma":[0.000050695093,0.00008899072,0.000031597414,0.00008956435,0.000071099166,0.0000072843663,0.000034591332,0.00004550239,0.000010899864],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030828099,0.00007009328,0.016173968,0.000014788381,0.000029952029,0.0000023669395,0.00017442861,6.231319e-7,0.9796038,0.0011437502,0.001899714,0.0005782164],"study_design_scores_gemma":[0.00048749757,0.0005160803,0.86210084,0.00006000713,0.000024088136,0.000003463626,0.00016490211,0.0000012827649,0.12103287,0.00016619437,0.015223995,0.00021876062],"about_ca_topic_score_codex":0.00006433896,"about_ca_topic_score_gemma":0.0010797941,"teacher_disagreement_score":0.85857093,"about_ca_system_score_codex":0.0000072692624,"about_ca_system_score_gemma":0.00000979288,"threshold_uncertainty_score":0.3628936},"labels":[],"label_agreement":null},{"id":"W1978564002","doi":"10.1016/s0008-4182(05)80037-7","title":"Acute painful vision loss and acute abdomen: a case of endogenous Clostridium perfringens endophthalmitis","year":2005,"lang":"en","type":"review","venue":"Canadian Journal of Ophthalmology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Hypopyon; Erythrocyte sedimentation rate; Surgery; Endophthalmitis; Gastroenterology; Internal medicine","score_opus":0.04754100283273224,"score_gpt":0.33194185859688957,"score_spread":0.2844008557641573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978564002","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13547456,0.8618174,0.0000057567754,0.000038772265,0.0006392335,0.00032810096,0.0004955268,0.0000020847062,0.0011985189],"genre_scores_gemma":[0.40891963,0.58960336,0.00045198208,0.000009918326,0.00051865005,0.000008396224,0.000106850486,0.000057567773,0.0003236313],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9974194,0.00036868837,0.0012273333,0.00042810914,0.000095372896,0.00046106937],"domain_scores_gemma":[0.99733835,0.00008248347,0.0011004169,0.0004790736,0.0003545695,0.00064509676],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00059463683,0.0003915989,0.0013545086,0.0003909622,0.00015038616,0.00005830956,0.00039653218,0.0005953232,0.00032822278],"category_scores_gemma":[0.00028239173,0.00037112652,0.00048172285,0.00016922278,0.00034326068,0.000012440286,0.000081721235,0.00039353274,0.000006699066],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106073676,0.00015053274,0.0003182927,0.003119866,0.0029730196,0.5751006,0.00035455692,0.0000024769818,0.016096672,0.000045901288,0.0004822721,0.40124974],"study_design_scores_gemma":[0.00031475112,0.0007435183,0.000012039155,0.0005546405,0.0007162168,0.90787655,0.00003179866,6.7116184e-7,0.0003564084,0.000009773548,0.08911199,0.00027164444],"about_ca_topic_score_codex":0.0005221366,"about_ca_topic_score_gemma":0.00011663586,"teacher_disagreement_score":0.40097812,"about_ca_system_score_codex":0.000111525536,"about_ca_system_score_gemma":0.001853325,"threshold_uncertainty_score":0.99987406},"labels":[],"label_agreement":null},{"id":"W1983263240","doi":"10.1016/j.idcr.2015.02.002","title":"Anaerobic urinary tract infection caused by Veillonella parvula identified using cystine-lactose-electrolyte deficient media and matrix-assisted laser desorption ionization-time of flight mass spectrometry","year":2015,"lang":"en","type":"article","venue":"IDCases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Veillonella; Mass spectrometry; Microbiology; Urinary system; Medicine; Urine; Chromatography; Chemistry; Bacteria; Biology; Internal medicine","score_opus":0.02495262840618424,"score_gpt":0.26946596992481703,"score_spread":0.2445133415186328,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983263240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99630356,0.00049920153,0.0026779526,0.000029294639,0.00018582083,0.00018929747,0.000045955727,0.000037302394,0.000031612934],"genre_scores_gemma":[0.9980238,0.000051525665,0.0009490275,0.000018051762,0.000109757515,0.0000059820795,0.0006724906,0.00002511169,0.00014422504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986966,0.00015827733,0.0003898507,0.00037459476,0.00017804759,0.00020258832],"domain_scores_gemma":[0.9990917,0.000044649092,0.00024775678,0.00026697278,0.00022866832,0.00012029386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033805426,0.0001725592,0.00020582353,0.00012958153,0.00009757143,0.000076579985,0.00007310971,0.00015361053,0.00003315355],"category_scores_gemma":[0.00048335356,0.00017989264,0.00006156573,0.00033046608,0.00007355182,0.000022958267,0.000041032985,0.00007171125,0.000009365778],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008040509,0.00024648086,0.011644211,0.000030300565,0.00002547081,0.000004750593,0.000053771542,0.000090113,0.9874601,0.000004859944,0.00026670584,0.00009282831],"study_design_scores_gemma":[0.0011003867,0.00040898766,0.07475243,0.000037065907,0.00010820456,0.00015482846,0.000075466225,0.0015558974,0.921193,0.00004467796,0.00024696428,0.0003220729],"about_ca_topic_score_codex":0.00010851936,"about_ca_topic_score_gemma":0.00002442151,"teacher_disagreement_score":0.06626709,"about_ca_system_score_codex":0.00005696753,"about_ca_system_score_gemma":0.000079894904,"threshold_uncertainty_score":0.7335809},"labels":[],"label_agreement":null},{"id":"W1983918144","doi":"10.1128/aem.71.11.7613-7617.2005","title":"Bacteriocin (Mutacin) Production by <i>Streptococcus mutans</i> Genome Sequence Reference Strain UA159: Elucidation of the Antimicrobial Repertoire by Genetic Dissection","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Health Research Council of New Zealand; Otago Medical Research Foundation; University of Toronto; University of Otago","keywords":"Bacteriocin; Streptococcus mutans; Biology; Strain (injury); Whole genome sequencing; Genetics; Repertoire; Antimicrobial; Microbiology; Genome; Computational biology; Sequence (biology); Gene; Bacteria; Anatomy","score_opus":0.005325087641576195,"score_gpt":0.1869164067004393,"score_spread":0.1815913190588631,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983918144","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985008,0.00010465251,0.000088535875,0.00020644652,0.00010433331,0.0003312752,0.0006084299,0.000009582615,0.000045916942],"genre_scores_gemma":[0.9961206,0.00019371016,0.0001309557,0.00016881817,0.00007893091,0.000021195034,0.0029160697,0.000013347565,0.00035640254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897885,0.00006134454,0.0002838347,0.00047481863,0.000032783428,0.00016834815],"domain_scores_gemma":[0.9995066,0.0000049134574,0.00016022043,0.00028506533,0.0000089040195,0.000034312387],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094023715,0.00015057005,0.0001252484,0.000013433931,0.00013656958,0.00001566836,0.00012957417,0.00016140967,0.000043028365],"category_scores_gemma":[0.000011726823,0.00013085891,0.00003141654,0.000046803456,0.0002886791,0.000008737454,0.00008757815,0.000089742796,0.000006214401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022511265,0.00006848852,0.0016886597,0.000010864593,0.000012382906,5.129086e-8,0.000055344437,0.00001399657,0.99248207,0.0000023373,0.0004176769,0.0052256417],"study_design_scores_gemma":[0.00021315043,0.00005346881,0.012810464,0.0000051547618,0.000013513717,0.0000361948,0.0000711876,0.000003973509,0.9673688,0.0000034192465,0.019271186,0.00014949369],"about_ca_topic_score_codex":0.000011713269,"about_ca_topic_score_gemma":0.000021733476,"teacher_disagreement_score":0.025113251,"about_ca_system_score_codex":0.000038463426,"about_ca_system_score_gemma":0.0000146518205,"threshold_uncertainty_score":0.53362715},"labels":[],"label_agreement":null},{"id":"W1984156594","doi":"10.1128/aac.44.3.747-751.2000","title":"Bloodstream Infections Due to <i>Candida</i> Species: SENTRY Antimicrobial Surveillance Program in North America and Latin America, 1997-1998","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":377,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Latin Americans; Itraconazole; Fungemia; Fluconazole; Candida glabrata; Corpus albicans; Candida albicans; Medicine; Candida krusei; Candida parapsilosis; Microbiology; Biology; Antifungal","score_opus":0.007527494857301025,"score_gpt":0.23716477988494988,"score_spread":0.22963728502764885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984156594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979249,0.000014929045,0.000045515524,0.0010742072,0.0000868297,0.0004423182,0.00014270133,0.000040699484,0.00022790399],"genre_scores_gemma":[0.9908416,0.0013949459,0.00093888387,0.005457985,0.00019115684,0.00001764052,0.0004184977,0.000029720655,0.000709567],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987162,0.00006116745,0.00030131772,0.00053831015,0.00006486322,0.00031815557],"domain_scores_gemma":[0.99950224,0.000012252187,0.000077418386,0.0002545505,0.000032075415,0.00012145643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005413234,0.00022522695,0.00026352628,0.00005556179,0.00014913354,0.00013530812,0.00011366508,0.000097993696,0.00012738285],"category_scores_gemma":[0.000017408955,0.00023040982,0.000059108017,0.00028959734,0.00015391325,0.000011697494,0.000050635346,0.000100178215,0.000021227335],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019531047,0.0010260864,0.47047767,0.00005651257,0.00008067676,0.000010524833,0.00075461215,0.000046728786,0.35677144,0.0000010389367,0.025524626,0.14505476],"study_design_scores_gemma":[0.0013964516,0.000298007,0.51504356,0.00003193065,0.000010400099,0.000030651587,0.00006931751,0.000075456686,0.009334167,0.0000018883851,0.47325835,0.00044983366],"about_ca_topic_score_codex":0.00041117298,"about_ca_topic_score_gemma":0.001150635,"teacher_disagreement_score":0.44773373,"about_ca_system_score_codex":0.000012747574,"about_ca_system_score_gemma":0.000029269428,"threshold_uncertainty_score":0.93958396},"labels":[],"label_agreement":null},{"id":"W1986895363","doi":"10.1186/1756-0500-2-146","title":"Rationale for and protocol of a multi-national population-based bacteremia surveillance collaborative","year":2009,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Jubilee Hospital; Calgary Laboratory Services; Island Health; Université de Sherbrooke; University of Calgary","funders":"","keywords":"Bacteremia; Epidemiology; Medicine; Population; Epidemiological surveillance; Intensive care medicine; Protocol (science); Environmental health; MEDLINE; Pathology; Alternative medicine; Biology","score_opus":0.16874939469932748,"score_gpt":0.4565910005966046,"score_spread":0.28784160589727714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986895363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95023286,0.00002312079,0.009193212,0.0005761433,0.000027970253,0.03961389,0.00019541859,0.00001331596,0.00012407516],"genre_scores_gemma":[0.96746105,6.9854553e-7,0.024678225,0.000031959615,0.00008646271,0.0072865,0.00033605212,0.0000054542006,0.00011362251],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991194,0.00016773457,0.00018574447,0.00021866974,0.00019215107,0.00011630204],"domain_scores_gemma":[0.9981995,0.00031529876,0.00006671621,0.00012308535,0.0012558147,0.000039581133],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009691858,0.000057484674,0.00007955299,0.000054320302,0.000106666696,0.000041329742,0.00007395296,0.000060421302,0.000012457113],"category_scores_gemma":[0.0050503295,0.00005535253,0.00002600487,0.00013026445,0.00005464273,0.0000062439203,0.000016223845,0.00003890947,7.88281e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033953012,0.00012282663,0.15020764,0.0000808148,0.000005335768,3.383547e-8,0.000030767427,0.0000851807,0.84700936,0.0005203722,0.0002743829,0.0013237316],"study_design_scores_gemma":[0.0013509236,0.00027255432,0.9009913,0.00001685071,9.072242e-7,3.2164203e-7,0.000023721297,0.0032334283,0.091647916,0.00065634784,0.0017094297,0.000096295335],"about_ca_topic_score_codex":0.000022639564,"about_ca_topic_score_gemma":0.00027763483,"teacher_disagreement_score":0.7553615,"about_ca_system_score_codex":0.000017402004,"about_ca_system_score_gemma":0.00031420778,"threshold_uncertainty_score":0.6046081},"labels":[],"label_agreement":null},{"id":"W1987304648","doi":"10.1021/ac049391g","title":"Bacterial Identification by Protein Mass Mapping Combined with an Experimentally Derived Protein Mass Database","year":2004,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Edgewood Chemical Biological Center","keywords":"Chemistry; Database; Mass spectrometry; Chromatography; Matrix-assisted laser desorption/ionization; Bacterial taxonomy; Protein mass spectrometry; Identification (biology); Bacterial growth; Mass spectrum; Electrospray ionization; Analytical Chemistry (journal); Bacteria; Biochemistry; Desorption; 16S ribosomal RNA; Biology","score_opus":0.01524112952407381,"score_gpt":0.25355070255248996,"score_spread":0.23830957302841616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987304648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9905103,0.000017382752,0.00822851,0.00025701022,0.00003155243,0.00046887682,0.00007065074,0.000058359667,0.0003573495],"genre_scores_gemma":[0.98948956,0.0000017822114,0.0053039594,0.000055336735,0.00019010453,0.0001269456,0.00356717,0.000036769317,0.0012283572],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982377,0.000053028903,0.00042264827,0.00073675736,0.00023135291,0.00031846316],"domain_scores_gemma":[0.9987172,0.0000048304373,0.00016163317,0.0007378106,0.00014356845,0.00023499133],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023129546,0.00025174144,0.00019929082,0.000019107256,0.00014318325,0.00019459265,0.0003208029,0.00018977252,0.00020832274],"category_scores_gemma":[0.00015882234,0.00024973915,0.00006685606,0.0001304886,0.00016575438,0.00003272711,0.0000663454,0.0001442076,0.000019020603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030982564,0.0002256216,0.00011602389,0.00006847822,0.000043214503,0.0000050260874,0.00002390407,0.0000034768204,0.9990516,0.00004407742,0.000060501432,0.00004825458],"study_design_scores_gemma":[0.001270094,0.0001662713,0.00020460197,0.00005353642,0.00002047817,0.0000056634776,0.00022002589,0.0001294671,0.99702376,0.000103721475,0.00046627581,0.00033610218],"about_ca_topic_score_codex":0.000035120443,"about_ca_topic_score_gemma":0.000008243892,"teacher_disagreement_score":0.003496519,"about_ca_system_score_codex":0.00007323538,"about_ca_system_score_gemma":0.0001401167,"threshold_uncertainty_score":0.99999547},"labels":[],"label_agreement":null},{"id":"W1989909002","doi":"10.1007/s00284-014-0619-3","title":"Detection of Nosema bombycis by FTA Cards and Loop-Mediated Isothermal Amplification (LAMP)","year":2014,"lang":"en","type":"article","venue":"Current Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"Earmarked Fund for China Agriculture Research System; China Agricultural Research System; Chinese Academy of Agricultural Sciences; Chinese Academy of Sciences","keywords":"Loop-mediated isothermal amplification; Spore; Biology; Chromatography; Molecular biology; DNA; Microbiology; Chemistry","score_opus":0.008980986697168488,"score_gpt":0.23981073810464631,"score_spread":0.23082975140747783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989909002","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99544644,0.00072229624,0.0031031317,0.000047624566,0.00040084834,0.00013452061,0.00008944836,0.00001528531,0.000040395746],"genre_scores_gemma":[0.9981676,0.00009318598,0.000050050945,0.000038614628,0.00009548602,0.000010013988,0.0014371764,0.000010617232,0.00009728689],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991383,0.00013603756,0.00024903496,0.0003125868,0.000021985485,0.00014205325],"domain_scores_gemma":[0.9994419,0.000025125313,0.00014423492,0.00023790824,0.0001089684,0.000041813735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022163075,0.00010628691,0.00014083851,0.000034237022,0.00004967335,0.0000121176,0.0000971768,0.00014381656,0.000018645813],"category_scores_gemma":[0.00021364838,0.00010588172,0.000036721234,0.00005217902,0.00013070792,0.0000034337422,0.0000504556,0.000065139546,0.0000132648565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024817902,0.000056502748,0.0021059944,0.000028121578,0.0000107468295,1.1025206e-8,0.000022499502,3.0311813e-7,0.97971445,0.000014867199,0.0006895311,0.017332172],"study_design_scores_gemma":[0.00057966425,0.00015595568,0.007451003,0.000010235827,0.000016784827,0.000009986183,0.000015960522,0.000075062926,0.8778925,0.000015128694,0.11361661,0.00016110152],"about_ca_topic_score_codex":0.00001911495,"about_ca_topic_score_gemma":0.00003271793,"teacher_disagreement_score":0.11292708,"about_ca_system_score_codex":0.000009599115,"about_ca_system_score_gemma":0.000015688827,"threshold_uncertainty_score":0.43177313},"labels":[],"label_agreement":null},{"id":"W1991459549","doi":"10.1016/j.anaerobe.2014.09.001","title":"Analysis of Romanian Bacteroides isolates for antibiotic resistance levels and the corresponding antibiotic resistance genes","year":2014,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Food Inspection Agency","keywords":"Microbiology; Tigecycline; Antibiotic resistance; Clindamycin; Antibiotics; Bacteroides; Biology; Imipenem; Bacteroides fragilis; Metronidazole; Genetics; Bacteria","score_opus":0.014699910434207698,"score_gpt":0.2540872166379648,"score_spread":0.2393873062037571,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991459549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99524844,0.0008186896,0.0030200547,0.00029407695,0.00010547352,0.00021760452,0.000042007166,0.000012180136,0.00024145887],"genre_scores_gemma":[0.9959656,0.00008767443,0.0018912479,0.00011444264,0.000073864554,0.0000028273703,0.00007356945,0.00001521841,0.0017755317],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99886227,0.00016280707,0.0003442712,0.0003803596,0.00006204428,0.00018825091],"domain_scores_gemma":[0.99890864,0.00019359845,0.00022455769,0.00048356273,0.00014485285,0.000044784778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007962889,0.00013559175,0.0003068607,0.00008993342,0.00018203924,0.000074149255,0.00020563009,0.00007826916,0.0000058571395],"category_scores_gemma":[0.00070220226,0.00010855328,0.00014304405,0.00030516647,0.00022042335,0.000009018712,0.000057133057,0.000041108207,9.240103e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033515395,0.000027725962,0.034651127,0.000091664566,0.00031859617,1.3548043e-7,0.00013644644,0.00001452005,0.96101,0.0021316772,0.00023544313,0.0010475616],"study_design_scores_gemma":[0.0018605206,0.00014249262,0.6919329,0.000107431886,0.0009697391,0.000001524546,0.00024772936,0.0023211204,0.2900623,0.0003003626,0.011582792,0.00047109547],"about_ca_topic_score_codex":0.000031014722,"about_ca_topic_score_gemma":0.0023005754,"teacher_disagreement_score":0.6709477,"about_ca_system_score_codex":0.000007409173,"about_ca_system_score_gemma":0.000018442272,"threshold_uncertainty_score":0.44266742},"labels":[],"label_agreement":null},{"id":"W1992314814","doi":"10.1016/j.anaerobe.2014.06.007","title":"Phylogeny and molecular signatures for the phylum Fusobacteria and its distinct subclades","year":2014,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Fusobacteria; Phylum; Biology; Phylogenetic tree; Phylogenetics; Evolutionary biology; Clade; Internal transcribed spacer; Genetics; 16S ribosomal RNA; Gene; Proteobacteria","score_opus":0.01017941156256743,"score_gpt":0.24275442296267494,"score_spread":0.2325750114001075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992314814","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967512,0.00088577747,0.0015148373,0.00039524765,0.00010463642,0.00020363693,0.000015177659,0.000011030314,0.000118476244],"genre_scores_gemma":[0.998879,0.000083520914,0.00023461822,0.00036305524,0.0001560121,0.00002404453,0.000057765836,0.00001263104,0.00018936546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994116,0.000046608282,0.00010970493,0.0002597156,0.000039895345,0.0001324851],"domain_scores_gemma":[0.99960047,0.000049150785,0.00004741097,0.00019439976,0.00006075753,0.000047839512],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020480955,0.00009867326,0.000084444146,0.000010844846,0.00014344553,0.000073756324,0.00009848138,0.00007893058,0.000007532218],"category_scores_gemma":[0.0003407783,0.00007519114,0.00003528788,0.00002826865,0.000061384846,0.0000034146442,0.000066456814,0.00004058911,0.0000011034118],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020281259,0.000009814217,0.0010022662,0.000020338797,0.00001824136,1.2133968e-7,0.00002094918,0.0000010526893,0.9946097,0.00083202164,0.00032849735,0.0031366956],"study_design_scores_gemma":[0.0010518002,0.00039193858,0.32089984,0.00002037926,0.00009341297,0.0000110204555,0.00010475811,0.0023375056,0.5972998,0.00093512423,0.076369844,0.00048457982],"about_ca_topic_score_codex":0.0000119486485,"about_ca_topic_score_gemma":0.000059725615,"teacher_disagreement_score":0.39730993,"about_ca_system_score_codex":0.0000017590385,"about_ca_system_score_gemma":0.000008769632,"threshold_uncertainty_score":0.3066206},"labels":[],"label_agreement":null},{"id":"W1992752703","doi":"10.1016/j.diagmicrobio.2010.09.013","title":"UF-1000i™ flow cytometry is an effective screening method for urine specimens","year":2011,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Boniface Hospital; University of Manitoba","funders":"","keywords":"Urine; Flow cytometry; Bacteria; Microbiology; White blood cell; Chromatography; Medicine; Biology; Internal medicine; Immunology; Chemistry","score_opus":0.016854880257725795,"score_gpt":0.27499600856281886,"score_spread":0.25814112830509306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992752703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9385165,0.00038778555,0.059371967,0.000051110717,0.00030085735,0.0007282661,0.00038484533,0.000050449406,0.00020820748],"genre_scores_gemma":[0.9903049,0.00006479206,0.0073267776,0.00097295246,0.00025287195,0.00015585695,0.00078642747,0.000025346202,0.0001101174],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99870574,0.00020566737,0.00021871908,0.00058195076,0.000021204845,0.000266686],"domain_scores_gemma":[0.99896675,0.00026651713,0.00009007151,0.0003257226,0.00013615775,0.00021475571],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033279788,0.0001976665,0.00019485911,0.00007689956,0.00020953154,0.000027914304,0.00010572057,0.0001667907,0.00018386813],"category_scores_gemma":[0.0015567968,0.00019590458,0.00010269031,0.000079993384,0.00012391258,0.00001225093,0.00008700368,0.00008489218,0.000011208441],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046480604,0.00052309997,0.1212725,0.00009370722,0.00018548418,0.000007234414,0.00033620154,0.000007796847,0.8596356,0.00023428295,0.0016430217,0.015596252],"study_design_scores_gemma":[0.003714922,0.002315734,0.7149542,0.00007166476,0.0004546889,0.00013299177,0.00014488993,0.0007779228,0.25933594,0.0015249343,0.015478081,0.0010940557],"about_ca_topic_score_codex":0.000042162923,"about_ca_topic_score_gemma":0.000044115186,"teacher_disagreement_score":0.60029966,"about_ca_system_score_codex":0.000011057196,"about_ca_system_score_gemma":0.000030788684,"threshold_uncertainty_score":0.7988757},"labels":[],"label_agreement":null},{"id":"W1995928920","doi":"10.1128/jcm.01479-12","title":"Identification of Blood Culture Isolates Directly from Positive Blood Cultures by Use of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry and a Commercial Extraction System: Analysis of Performance, Cost, and Turnaround Time","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":203,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health","funders":"","keywords":"Turnaround time; Matrix-assisted laser desorption/ionization; Mass spectrometry; Identification (biology); Blood culture; Clinical microbiology; Chromatography; Microbiology; Biology; Medicine; Chemistry; Desorption; Computer science","score_opus":0.015894417294573977,"score_gpt":0.3056965889438902,"score_spread":0.2898021716493162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995928920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978676,0.0008172901,0.0006621325,0.00002264929,0.00011276553,0.00012222327,0.00038841862,0.0000024733085,0.0000044895796],"genre_scores_gemma":[0.9973065,0.0004929021,0.0015370458,0.000009361962,0.00010485397,8.33763e-7,0.0004638593,0.000007199956,0.00007742302],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976978,0.0004186784,0.0015506691,0.00017248373,0.000057421927,0.00010295643],"domain_scores_gemma":[0.9965692,0.0002451491,0.0023410972,0.00015341095,0.0006275421,0.000063597974],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00083428127,0.00011672687,0.00064329535,0.00014407276,0.000036819518,0.000015900172,0.000093829076,0.0003170992,0.000020915875],"category_scores_gemma":[0.00055147667,0.00009535417,0.00018878233,0.00024689847,0.00019755808,0.00004695992,0.000033952954,0.00013083273,4.898297e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036862862,0.00040723267,0.09137737,0.00005651992,0.0012553758,1.2938831e-7,0.00009094124,0.000009559416,0.90620947,0.00000336865,0.0000762972,0.00014508948],"study_design_scores_gemma":[0.0007639114,0.00040234765,0.23506525,0.00006401454,0.0023705524,0.000034483648,0.000055808607,0.00012554594,0.7609613,0.000002029919,0.0000727498,0.00008198103],"about_ca_topic_score_codex":0.000019141302,"about_ca_topic_score_gemma":0.0000047984195,"teacher_disagreement_score":0.14524817,"about_ca_system_score_codex":0.000008814751,"about_ca_system_score_gemma":0.00002805453,"threshold_uncertainty_score":0.388843},"labels":[],"label_agreement":null},{"id":"W2003189381","doi":"10.1378/chest.123.4.1142","title":"The Contribution of Blood Cultures to the Clinical Management of Adult Patients Admitted to the Hospital With Community-Acquired Pneumonia","year":2003,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":222,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Ottawa; Dalhousie University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia severity index; Pneumonia; Internal medicine; Observational study","score_opus":0.013491216219986347,"score_gpt":0.284609998939822,"score_spread":0.27111878271983564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003189381","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977899,0.000050655886,0.0002933478,0.0012379911,0.00022442156,0.00030658607,0.000008086,0.0000022787672,0.000086719985],"genre_scores_gemma":[0.9991942,0.00006952093,0.00036227555,0.00020202865,0.00006885326,0.000010146494,0.00001965311,0.000006001165,0.00006733813],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988222,0.0004354144,0.00037551907,0.00009441231,0.00014430626,0.00012810914],"domain_scores_gemma":[0.9986926,0.00004857653,0.00023475273,0.00039256134,0.0005634264,0.00006813771],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009905845,0.00007839321,0.00009938361,0.0000086582995,0.0003959603,0.000054100627,0.00036639505,0.000045258505,0.0000031189008],"category_scores_gemma":[0.00070287596,0.000036619607,0.000070282986,0.00009917115,0.00009821259,0.000003444146,0.000077034,0.00013999219,0.0000021036974],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012811961,0.0034299109,0.5674022,0.00011300137,0.001704231,0.0000048669076,0.004010922,0.0001442506,0.395149,0.0018494996,0.007176424,0.017734518],"study_design_scores_gemma":[0.0014974389,0.0015334766,0.9002504,0.00009734804,0.00014550831,0.000015004063,0.0026034117,0.0000038328985,0.06530745,0.000054733067,0.028352233,0.0001391655],"about_ca_topic_score_codex":0.00000860741,"about_ca_topic_score_gemma":0.000084618,"teacher_disagreement_score":0.33284822,"about_ca_system_score_codex":0.0000069814505,"about_ca_system_score_gemma":0.000031280888,"threshold_uncertainty_score":0.30454466},"labels":[],"label_agreement":null},{"id":"W2003321967","doi":"10.1016/j.anaerobe.2013.06.008","title":"Occurrence and analysis of rare cfiA–bft doubly positive Bacteroides fragilis strains","year":2013,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Szegedi Tudományegyetem; European Society of Clinical Microbiology and Infectious Diseases; Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Biology; Microbiology; Transposable element; Antibiotics; Gene; Genetics; Genome","score_opus":0.013061505003007817,"score_gpt":0.25035749797656515,"score_spread":0.23729599297355733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003321967","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988621,0.00010347979,0.00026299243,0.00011972986,0.000042392752,0.0001114249,0.00021316673,0.000008395004,0.00027633135],"genre_scores_gemma":[0.99839586,0.00005511107,0.00041508937,0.00011927634,0.000021852391,0.0000075995263,0.0008671873,0.000003546828,0.000114478105],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992857,0.000047096677,0.00020566481,0.00027459508,0.00006389981,0.00012305351],"domain_scores_gemma":[0.9993785,0.00001635936,0.00009419154,0.00026891302,0.00017553596,0.00006650072],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000096150805,0.00009387823,0.00015965498,0.00006857012,0.000049055914,0.000047870595,0.00010702742,0.00007633166,0.00019454969],"category_scores_gemma":[0.00011548173,0.000090547124,0.0000792,0.00019959193,0.00009271206,0.000010978826,0.00006123326,0.00004359667,0.000006972431],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007315768,0.00004272239,0.074322015,0.0000116702995,0.00023645736,3.8977325e-7,0.00019226405,0.0000056629574,0.919552,0.000053872485,0.00078357157,0.0047920514],"study_design_scores_gemma":[0.00019677164,0.00010362314,0.9340969,0.0000095865435,0.00016478976,0.000001383519,0.00022174792,0.00017187421,0.06441042,0.000026557023,0.00043072787,0.000165639],"about_ca_topic_score_codex":0.0003416075,"about_ca_topic_score_gemma":0.00020573668,"teacher_disagreement_score":0.8597749,"about_ca_system_score_codex":0.0000046177956,"about_ca_system_score_gemma":0.000020010195,"threshold_uncertainty_score":0.36924046},"labels":[],"label_agreement":null},{"id":"W2003750564","doi":"10.1016/j.anaerobe.2014.11.003","title":"The occurrence of antibiotic resistance genes in drug resistant Bacteroides fragilis isolates from Groote Schuur Hospital, South Africa","year":2014,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Cape Town; South African Medical Research Council; Canadian Food Inspection Agency","keywords":"Tigecycline; Bacteroides fragilis; Microbiology; Imipenem; Biology; Gene; Bacteroides; Tetracycline; Plasmid; Drug resistance; Multiple drug resistance; Antibiotics; Antibiotic resistance; Genetics; Bacteria","score_opus":0.008800056383610835,"score_gpt":0.21440055297901697,"score_spread":0.20560049659540613,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003750564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971028,0.0018601683,0.00010939343,0.00023220602,0.00019428798,0.00012307003,0.00006545044,0.00001327477,0.00029932696],"genre_scores_gemma":[0.99865997,0.0002120714,0.00059216155,0.000029070645,0.00007342647,0.0000040169157,0.00008087507,0.000010844577,0.0003375832],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987444,0.00016039737,0.0003775937,0.00039350876,0.00009726542,0.00022681057],"domain_scores_gemma":[0.9989255,0.00009071043,0.00019878215,0.00061994715,0.000116222436,0.000048830065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041507077,0.0001392576,0.00016994005,0.000029493298,0.00013255408,0.00007197108,0.00035038788,0.00008257232,0.000008616972],"category_scores_gemma":[0.0006179984,0.00011378549,0.000070088485,0.00014008253,0.00016027538,0.000009328683,0.00009573667,0.00008687385,0.000008079541],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009453071,0.00007072492,0.032971956,0.000029716102,0.0000233584,6.4597305e-7,0.00072382006,0.0000043977875,0.9630061,0.00024177525,0.0013329845,0.0015000089],"study_design_scores_gemma":[0.0010409424,0.00029076086,0.4550958,0.000290854,0.000046425845,4.158939e-7,0.0015353403,0.00017741253,0.46273983,0.0013167787,0.07668967,0.00077578635],"about_ca_topic_score_codex":0.00023582655,"about_ca_topic_score_gemma":0.0022638775,"teacher_disagreement_score":0.50026625,"about_ca_system_score_codex":0.0000102611,"about_ca_system_score_gemma":0.000035469235,"threshold_uncertainty_score":0.46400377},"labels":[],"label_agreement":null},{"id":"W2004195154","doi":"10.1371/journal.pone.0005328","title":"Rapid Etiological Classification of Meningitis by NMR Spectroscopy Based on Metabolite Profiles and Host Response","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Institute for Biodiagnostics","funders":"National Health and Medical Research Council; Medical Research Council","keywords":"Metabolite; Meningitis; Cerebrospinal fluid; Nuclear magnetic resonance spectroscopy; Metabolomics; Proton NMR; Chemistry; Biochemistry; Microbiology; Biology; Medicine; Chromatography; Pathology; Stereochemistry; Surgery","score_opus":0.037691442438636084,"score_gpt":0.2568595534007559,"score_spread":0.2191681109621198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004195154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980096,0.00020840057,0.0001460712,0.0010590235,0.000010189928,0.0001879962,0.000058302845,0.000018010058,0.00030241063],"genre_scores_gemma":[0.9954017,0.00007902214,0.0039324015,0.00017845516,0.000045328,0.000012218609,0.00020236475,0.000006162679,0.00014235212],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991224,0.00019036178,0.00019410018,0.00027503778,0.000107555265,0.00011055359],"domain_scores_gemma":[0.99947953,0.00004349472,0.000097193195,0.00024880577,0.00008171577,0.000049255115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035497395,0.00008772524,0.00014295928,0.00003290008,0.000047146194,0.000022691785,0.00007457099,0.00009558643,0.00003620183],"category_scores_gemma":[0.0006369761,0.0000823367,0.000029776706,0.00006042578,0.00006702728,0.0000033641927,0.00001220169,0.000056862635,0.0000031947543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005998565,0.00048118978,0.002084909,0.000010860633,0.000014233962,1.5754603e-7,0.00001326001,1.9138153e-7,0.996233,0.00006385661,0.00014794081,0.0003505544],"study_design_scores_gemma":[0.00024808044,0.0006038447,0.18797553,0.000017700217,0.000018623165,2.9269603e-7,0.000011192118,0.00023108644,0.81058186,0.000022012295,0.00021653237,0.00007326681],"about_ca_topic_score_codex":0.0000018592875,"about_ca_topic_score_gemma":4.139299e-7,"teacher_disagreement_score":0.18589061,"about_ca_system_score_codex":0.000007792995,"about_ca_system_score_gemma":0.000023354538,"threshold_uncertainty_score":0.3357593},"labels":[],"label_agreement":null},{"id":"W2005987452","doi":"10.1016/j.anaerobe.2010.09.004","title":"Anaerobe/aerobe environmental flux determines protein expression profiles of Bacteroides fragilis, a redox pathogen","year":2010,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University; Université Laval; Brock University","funders":"","keywords":"Bacteroides fragilis; Microbiology; Bacteria; Oxidizing agent; Biology; HeLa; Bacteroidaceae; Microorganism; Redox; Bacteroides; Pathogen; Chemistry; Biochemistry; In vitro","score_opus":0.0065108569607286,"score_gpt":0.22011997069405206,"score_spread":0.21360911373332347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005987452","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99888295,0.00008701745,0.00009844743,0.000051235664,0.000195751,0.00040462596,0.00008247416,0.000027152015,0.0001703535],"genre_scores_gemma":[0.991788,0.000018910576,0.0061022057,0.00005144566,0.00023032662,0.000060200524,0.0006346426,0.00003133685,0.0010829095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986143,0.0000875236,0.00041133963,0.0004875628,0.0001534472,0.00024580813],"domain_scores_gemma":[0.99892753,0.000012856959,0.00021423679,0.00068314566,0.00005378253,0.0001084304],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024325628,0.0002067063,0.0002003421,0.000047753772,0.00011068984,0.000039527466,0.00029399586,0.00022873816,0.00030344748],"category_scores_gemma":[0.00023176956,0.00019430075,0.00011721777,0.000064569474,0.00016387762,0.000017876077,0.00017293017,0.00014813074,0.00002052996],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034823468,0.0001240928,0.020401577,0.000027462742,0.000011496402,0.0000017767653,0.00006615528,6.858195e-7,0.9766088,0.000021928714,0.00035745028,0.002343757],"study_design_scores_gemma":[0.00028956425,0.00014224126,0.044439342,0.000029566687,0.000010365963,0.0000073628626,0.000078037345,0.000013360938,0.94895774,0.000037201615,0.005789404,0.00020582856],"about_ca_topic_score_codex":0.000040353694,"about_ca_topic_score_gemma":0.00012006042,"teacher_disagreement_score":0.02765107,"about_ca_system_score_codex":0.000008095403,"about_ca_system_score_gemma":0.000039247436,"threshold_uncertainty_score":0.79233545},"labels":[],"label_agreement":null},{"id":"W2006016478","doi":"10.1186/s13063-015-0688-z","title":"Bacteremia Antibiotic Length Actually Needed for Clinical Effectiveness (BALANCE): study protocol for a pilot randomized controlled trial","year":2015,"lang":"en","type":"article","venue":"Trials","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Royal Columbian Hospital; University of Calgary; Kingston General Hospital; Queen's University; London Health Sciences Centre; Centre hospitalier universitaire de Québec; Sunnybrook Health Science Centre; St. Michael's Hospital; University of Manitoba; Ottawa Hospital; Capital District Health Authority; Western University; Université de Sherbrooke; University of Toronto; Dalhousie University; St. Paul's Hospital; McMaster University; Université Laval; University of Alberta","funders":"Queen's University; University of Alberta; University of Toronto; Ontario Ministry of Health and Long-Term Care; London Health Sciences Centre","keywords":"Medicine; Bacteremia; Randomized controlled trial; Intensive care unit; Procalcitonin; Intensive care medicine; Blood culture; Blinding; Clinical trial; Mortality rate; Randomization; Emergency medicine; Internal medicine; Antibiotics; Sepsis","score_opus":0.28308185623615745,"score_gpt":0.5008649449340263,"score_spread":0.2177830886978689,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006016478","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.46140587,0.000005410147,0.003220899,0.000045433575,0.0010183132,0.53418255,0.000021872824,0.000035704674,0.000063943175],"genre_scores_gemma":[0.5547969,0.0000012574698,0.0008023134,0.00006240032,0.0017164295,0.44222915,0.00008600767,0.000033359793,0.00027220775],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9906504,0.005943955,0.0022686517,0.00066295336,0.00017802499,0.00029599862],"domain_scores_gemma":[0.99194926,0.005708222,0.001039428,0.0005192091,0.00061459065,0.00016928614],"candidate_categories":["metaresearch"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.04192717,0.00028812917,0.002800361,0.000053633317,0.00010436022,0.00015596714,0.00027062657,0.00021612582,0.000014550373],"category_scores_gemma":[0.08348182,0.00020385618,0.00095551164,0.0000651005,0.00009736427,0.000009698956,0.000060283233,0.00008606585,0.000006162144],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9271711,0.0015939706,0.00024101975,0.000069709895,0.0005221155,2.2353206e-7,0.000059707356,0.000001483238,0.068596326,0.00002499451,0.0012441365,0.00047519107],"study_design_scores_gemma":[0.98320925,0.0076793507,0.00018124051,0.000031227624,0.00035287463,7.3338396e-7,0.00012727815,0.000090506815,0.0067341,0.00016985906,0.00118136,0.00024218837],"about_ca_topic_score_codex":0.000015447024,"about_ca_topic_score_gemma":0.0000118667185,"teacher_disagreement_score":0.09339099,"about_ca_system_score_codex":0.00002727156,"about_ca_system_score_gemma":0.00042616166,"threshold_uncertainty_score":0.9865376},"labels":[],"label_agreement":null},{"id":"W2007503855","doi":"10.2217/ahe.09.72","title":"Bacteremia in the Elderly","year":2009,"lang":"en","type":"article","venue":"Aging Health","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Bacteremia; Medicine; Intensive care medicine; Antibiotics; Antimicrobial","score_opus":0.02112867751319094,"score_gpt":0.31448841302401276,"score_spread":0.29335973551082184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007503855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887085,0.00013291239,0.00014075545,0.010141353,0.00006650602,0.00009772629,9.754684e-7,0.000009807638,0.0007014632],"genre_scores_gemma":[0.99493587,0.000028904737,0.00027861536,0.0044943807,0.00011359415,0.0000019517433,0.000035206394,0.0000028441127,0.000108629516],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994277,0.0000985129,0.00013785057,0.00014557455,0.000047353475,0.00014303533],"domain_scores_gemma":[0.999679,0.000008607147,0.000039395887,0.00023038253,0.000014418864,0.000028148517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049864093,0.000046168392,0.000051713814,0.00001629948,0.0000635602,0.000030679235,0.00012112779,0.000027924192,0.000006620966],"category_scores_gemma":[0.00005853293,0.000036509235,0.000019499843,0.00006667927,0.000009796816,0.0000019350264,0.000007965438,0.00006565616,0.000007176086],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002965813,0.00033606912,0.040953726,0.000053079515,0.000007447163,0.0000042781903,0.0030883723,0.0000107118785,0.5288472,0.0016156336,0.017442442,0.40761137],"study_design_scores_gemma":[0.0003430789,0.00043301666,0.9466743,0.000030495223,0.0000015929625,0.000016222153,0.0003407942,0.000023448314,0.002511977,0.00049135135,0.048995193,0.00013853771],"about_ca_topic_score_codex":0.00009361458,"about_ca_topic_score_gemma":0.0001662787,"teacher_disagreement_score":0.9057206,"about_ca_system_score_codex":0.000011308952,"about_ca_system_score_gemma":0.00005697581,"threshold_uncertainty_score":0.14888035},"labels":[],"label_agreement":null},{"id":"W2014508166","doi":"10.1016/s0021-9673(01)01030-5","title":"Automated mass analysis of low-molecular-mass bacterial proteome by liquid chromatography–electrospray ionization mass spectrometry","year":2001,"lang":"en","type":"article","venue":"Journal of Chromatography A","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Chemistry; Chromatography; Mass spectrometry; Electrospray ionization; Analytical Chemistry (journal); Mass spectrum; Electrospray; Protein mass spectrometry; Direct electron ionization liquid chromatography–mass spectrometry interface; Ionization; Ion; Chemical ionization","score_opus":0.005188934958883616,"score_gpt":0.23932797907477912,"score_spread":0.2341390441158955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014508166","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9642289,0.00043702137,0.034417674,0.00011320217,0.00027179773,0.00026928817,0.000058683032,0.00006329261,0.00014010837],"genre_scores_gemma":[0.9926533,0.00025072953,0.006387443,0.000058992777,0.00018536393,0.000010656993,0.0003921919,0.000041830535,0.000019508705],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971078,0.00028248332,0.0012931083,0.0004153946,0.0004938948,0.00040731873],"domain_scores_gemma":[0.9971517,0.000027930011,0.0014002025,0.00052188424,0.0006874312,0.00021087783],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006982868,0.00031898767,0.00070127787,0.0011655778,0.00010524566,0.00013168828,0.00045754385,0.000294165,0.0002060162],"category_scores_gemma":[0.00021302371,0.0003116605,0.0009650365,0.0033236635,0.00015474943,0.000044071065,0.000032818283,0.00019462671,0.000002028154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045762685,0.00022889182,0.014700397,0.000058316688,0.0017965692,0.0000144334435,0.0000273774,0.00008583102,0.981986,0.000020454112,0.00059486664,0.00002926642],"study_design_scores_gemma":[0.0012151375,0.0011422522,0.021117708,0.0000741687,0.0007388793,0.000058403653,0.000049769285,0.00048527194,0.97394943,0.000062235114,0.0007332673,0.00037346774],"about_ca_topic_score_codex":0.000012119634,"about_ca_topic_score_gemma":0.0000073195997,"teacher_disagreement_score":0.02842435,"about_ca_system_score_codex":0.000036537873,"about_ca_system_score_gemma":0.00014250576,"threshold_uncertainty_score":0.99993354},"labels":[],"label_agreement":null},{"id":"W2014750291","doi":"10.1016/j.anaerobe.2014.05.015","title":"Antimicrobial susceptibility of clinical isolates of anaerobic bacteria in Ontario, 2010–2011","year":2014,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ottawa Hospital; University of Ottawa; Public Health Ontario; University of Toronto; Toronto Public Health","funders":"","keywords":"Microbiology; Anaerobic bacteria; Clindamycin; Penicillin; Piperacillin; Bacteroides fragilis; Meropenem; Tazobactam; Cefoxitin; Bacteroides; Peptostreptococcus; Biology; Fusobacterium; Medicine; Antibiotic resistance; Antibiotics; Imipenem; Bacteria; Staphylococcus aureus","score_opus":0.03204513110038498,"score_gpt":0.28991943061731623,"score_spread":0.25787429951693125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014750291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989269,0.000013908408,0.00013708588,0.000055992277,0.00045002034,0.00013747468,0.000009392406,0.0000071294007,0.000262132],"genre_scores_gemma":[0.9967621,0.000018546267,0.0025291871,0.00006597771,0.00007925324,0.0000020829043,0.0001238744,0.000012006565,0.00040699172],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982015,0.00022819704,0.0009202032,0.0004039003,0.000062116145,0.00018411723],"domain_scores_gemma":[0.9988196,0.000044603992,0.00031352707,0.00060581946,0.00015395366,0.00006248266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011237772,0.00012950625,0.00037462995,0.000049466093,0.000023035522,0.000010450218,0.00023352739,0.00021563921,0.0003235187],"category_scores_gemma":[0.0004164059,0.00013192074,0.00015681736,0.00006810959,0.00017445514,0.000008414808,0.00010704821,0.00013563619,0.000012320056],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007271009,0.000150779,0.3977954,0.000017823202,0.000010660517,1.0776528e-7,0.000041323834,0.000003198169,0.60076994,0.000027994125,0.00045354143,0.0006565184],"study_design_scores_gemma":[0.0005693696,0.00023313485,0.85686445,0.000020107458,0.00001017495,0.0000010418595,0.00001575993,0.000025253865,0.14051051,0.000040230658,0.0015891226,0.00012081476],"about_ca_topic_score_codex":0.024633557,"about_ca_topic_score_gemma":0.24246718,"teacher_disagreement_score":0.46025944,"about_ca_system_score_codex":0.000013266845,"about_ca_system_score_gemma":0.00013130013,"threshold_uncertainty_score":0.9818615},"labels":[],"label_agreement":null},{"id":"W2016325397","doi":"10.1309/lm5jc0ph0oggbszz","title":"Bailey &amp; Scott’s Diagnostic Microbiology, 13<sup>th</sup>Edn","year":2013,"lang":"en","type":"article","venue":"Laboratory Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Society of Microbiologists","funders":"","keywords":"Clinical microbiology; Library science; Art history; Medicine; History; Computer science; Microbiology; Biology","score_opus":0.013255072060756086,"score_gpt":0.25099897600719484,"score_spread":0.23774390394643877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016325397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953179,0.0010428439,0.00018006268,0.0018342467,0.0004939779,0.00035622876,0.000052984888,0.000058803642,0.0006629653],"genre_scores_gemma":[0.9935143,0.00014174375,0.00043957608,0.0025612141,0.0010556579,0.000064406195,0.0007262684,0.000032084103,0.001464724],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99853724,0.00018432084,0.00039015478,0.00048695318,0.00008779565,0.00031353158],"domain_scores_gemma":[0.99840456,0.00011826017,0.0001177849,0.0006615618,0.00050981046,0.00018804788],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00039018007,0.00021207726,0.00024625516,0.00005667066,0.000110519504,0.000031444335,0.0002618856,0.00021899377,0.001657593],"category_scores_gemma":[0.003424378,0.00018084132,0.000038946986,0.0002449459,0.0003150607,0.000010516252,0.00009099585,0.00015104645,0.00070751767],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008939404,0.00004471762,0.0122902915,0.000026829703,0.000024492114,0.0000015868156,0.00012090344,0.0000067514725,0.88034797,0.000028436174,0.10672931,0.00036980057],"study_design_scores_gemma":[0.002600108,0.00058452133,0.08134511,0.0002417228,0.00010769289,0.000037515554,0.00084399147,0.00006991499,0.074339114,0.00016232878,0.8387432,0.0009247519],"about_ca_topic_score_codex":0.00016302505,"about_ca_topic_score_gemma":0.00014614007,"teacher_disagreement_score":0.8060088,"about_ca_system_score_codex":0.000021049373,"about_ca_system_score_gemma":0.000107435095,"threshold_uncertainty_score":0.999255},"labels":[],"label_agreement":null},{"id":"W2016630863","doi":"10.1016/j.anaerobe.2013.03.001","title":"The prevalence of antibiotic resistance genes in Bacteroides fragilis group strains isolated in different European countries","year":2013,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":151,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Cefoxitin; Microbiology; Clindamycin; Biology; Ampicillin; Tigecycline; Bacteroides; Antibiotic resistance; Antibiotics; Gene; Genetics; Bacteria; Staphylococcus aureus","score_opus":0.008442621443853536,"score_gpt":0.2198158031572984,"score_spread":0.21137318171344485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016630863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99854976,0.00073087995,0.000037585916,0.00018668211,0.000066079716,0.00018720247,0.000010116412,0.0000068775594,0.00022479243],"genre_scores_gemma":[0.99827266,0.00087176665,0.00006988201,0.000043582197,0.000032336633,0.0000043388904,0.000023366054,0.000010175747,0.00067187584],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99903077,0.00018703652,0.00031830062,0.0002305807,0.000066457564,0.00016686635],"domain_scores_gemma":[0.99946046,0.000029545192,0.000097614655,0.00032602536,0.000059266593,0.000027113523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027063317,0.00009817842,0.00010422385,0.00002764972,0.000051497558,0.0000512049,0.00022121532,0.000047568425,0.000028117513],"category_scores_gemma":[0.00014296916,0.00007361853,0.000032139993,0.00008221908,0.00011667159,0.000009395585,0.00006105003,0.00006144279,0.000006869259],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017778319,0.000050722672,0.20926271,0.00009224218,0.0000065870454,8.3826393e-7,0.00011419587,0.000002147593,0.7891777,0.000092908194,0.00012433346,0.0010578262],"study_design_scores_gemma":[0.00018310604,0.00004826113,0.97987634,0.00006153461,0.0000032321452,4.2118546e-7,0.000091220936,0.000039576495,0.018847583,0.000040127205,0.00072220457,0.00008641092],"about_ca_topic_score_codex":0.00016752299,"about_ca_topic_score_gemma":0.0031211893,"teacher_disagreement_score":0.7706136,"about_ca_system_score_codex":0.000011921485,"about_ca_system_score_gemma":0.000011404927,"threshold_uncertainty_score":0.30020767},"labels":[],"label_agreement":null},{"id":"W2019540414","doi":"10.1016/j.jhin.2008.04.030","title":"Validity of electronic surveillance systems: a systematic review","year":2008,"lang":"en","type":"review","venue":"Journal of Hospital Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; South Health Campus; Alberta Health Services","funders":"","keywords":"Medicine; Electronic surveillance; Electronic data; MEDLINE; Coding (social sciences); Electronic database; Information retrieval; Computer science; Statistics","score_opus":0.026909749337034553,"score_gpt":0.31142408961023904,"score_spread":0.2845143402732045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019540414","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015176046,0.99641234,0.00017249008,0.000005004449,0.0010262134,0.0008213265,0.000010585374,0.000005701701,0.000028734794],"genre_scores_gemma":[0.0055579836,0.99393433,0.000010000264,0.0000060407733,0.00032403436,0.000023188544,0.000053417443,0.000023401954,0.00006761704],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9971327,0.00068488106,0.0016478943,0.00018329882,0.00020179561,0.00014939273],"domain_scores_gemma":[0.9956874,0.000058007157,0.003227807,0.0003589728,0.0006155474,0.000052265223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011407429,0.0002228092,0.0017591777,0.00009236025,0.000039057555,0.00002482368,0.00018429967,0.00021684125,0.0000046328414],"category_scores_gemma":[0.0016416471,0.00017131281,0.0008154397,0.00019098195,0.00003420003,0.000010082693,0.000035124744,0.00024313926,0.0000065187623],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000003731003,0.00016766206,0.00012522537,0.9956841,0.00033601123,0.0000030155352,0.0000069944244,0.0000018022388,0.00009486663,0.000011170567,0.0014126087,0.002152811],"study_design_scores_gemma":[0.00027502427,0.0026570435,0.00012121526,0.6618646,0.0018629335,0.0020646353,0.000007752946,0.0000038380576,0.000049666236,0.000008294227,0.3304779,0.0006071469],"about_ca_topic_score_codex":0.000014285638,"about_ca_topic_score_gemma":0.0000046251857,"teacher_disagreement_score":0.33381954,"about_ca_system_score_codex":0.00010774662,"about_ca_system_score_gemma":0.00034854485,"threshold_uncertainty_score":0.6985934},"labels":[],"label_agreement":null},{"id":"W2020601349","doi":"10.1016/j.anaerobe.2012.11.005","title":"Application of DNA sequence analysis based on five different conserved genes (16S rDNA, rpoB, gdh, est and pgm) for intra-species discrimination of Bacteroides fragilis","year":2012,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Food Inspection Agency","keywords":"rpoB; Biology; Bacteroides fragilis; Gene; Genetics; 16S ribosomal RNA; Phylogenetic tree; Ribosomal RNA; Sequence analysis; RNA polymerase; Nucleic acid sequence; RNA; Bacteria","score_opus":0.029826432186176286,"score_gpt":0.2738771149439756,"score_spread":0.24405068275779931,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020601349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.987201,0.00009577831,0.012173222,0.00012247892,0.000041755688,0.00022743897,0.000103140424,0.0000063949433,0.000028838995],"genre_scores_gemma":[0.99780214,0.000050226354,0.0011446612,0.000052162628,0.000049375958,0.000042402826,0.00078681414,0.000007799792,0.00006439418],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999258,0.0000596638,0.0002701339,0.0002180678,0.0000778789,0.00011629763],"domain_scores_gemma":[0.99921775,0.000072131326,0.0002039971,0.00029267438,0.00016533147,0.000048145143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018894374,0.00010415206,0.00018733999,0.00007008733,0.00005033058,0.000015200345,0.00008843685,0.00007871459,0.000010426953],"category_scores_gemma":[0.000186881,0.00009464447,0.00009026849,0.000108960325,0.00010931352,0.00000981349,0.000025188583,0.000025340138,3.7741455e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004545898,0.00010904655,0.0901928,0.00006797694,0.000056188856,1.4420622e-8,0.00011423292,0.000027549366,0.9060692,0.00036053083,0.000018771847,0.0029382112],"study_design_scores_gemma":[0.00020481438,0.00010233728,0.3937898,0.00001105093,0.00012769489,1.3826505e-7,0.0001446774,0.00241557,0.60287595,0.000031072206,0.00020949982,0.00008739027],"about_ca_topic_score_codex":0.0001503578,"about_ca_topic_score_gemma":0.00037045972,"teacher_disagreement_score":0.30359697,"about_ca_system_score_codex":0.000013126147,"about_ca_system_score_gemma":0.000014530072,"threshold_uncertainty_score":0.38594893},"labels":[],"label_agreement":null},{"id":"W2020659398","doi":"10.1097/00043426-200201000-00019","title":"Sensitivity of a Blood Culture Drawn Through a Single Lumen of a Multilumen, Long-Term, Indwelling, Central Venous Catheter in Pediatric Oncology Patients","year":2002,"lang":"en","type":"article","venue":"Journal of Pediatric Hematology/Oncology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Central venous catheter; Catheter; Lumen (anatomy); Pediatric oncology; Venous access; Internal medicine; Intensive care medicine; Surgery; Cancer","score_opus":0.02248270493908229,"score_gpt":0.2786994299008272,"score_spread":0.2562167249617449,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020659398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968408,0.0017098451,0.00017738613,0.00012861153,0.0006255418,0.00029968424,0.000021886266,0.0000068076,0.00018945831],"genre_scores_gemma":[0.99576265,0.0011908722,0.002229363,0.00008495414,0.0006364696,0.0000061996193,0.000027561418,0.000024229672,0.000037710503],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9963932,0.0008589234,0.0016543829,0.000380786,0.00022372344,0.00048897736],"domain_scores_gemma":[0.99657726,0.00021834711,0.0021193915,0.0003065121,0.00062637485,0.00015212418],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008446291,0.0002581185,0.0009944349,0.00026696053,0.00006400534,0.00001397069,0.0002939429,0.00078909396,0.00005237394],"category_scores_gemma":[0.0010893786,0.00024207812,0.00028943585,0.00035117028,0.00021400106,0.000030338437,0.0001386455,0.0004604716,0.000005334427],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003271478,0.012123966,0.86032826,0.00031269225,0.00016309824,0.00026531334,0.005252507,0.00003100981,0.117756076,0.000009012027,0.00089426606,0.0025366251],"study_design_scores_gemma":[0.03723246,0.054745216,0.690574,0.00019159357,0.004540403,0.006173779,0.0015919176,0.00028797073,0.19472812,0.00032022066,0.0072548576,0.0023594385],"about_ca_topic_score_codex":0.000047361576,"about_ca_topic_score_gemma":0.00024021525,"teacher_disagreement_score":0.16975427,"about_ca_system_score_codex":0.00012603374,"about_ca_system_score_gemma":0.0004133177,"threshold_uncertainty_score":0.9871659},"labels":[],"label_agreement":null},{"id":"W2024946086","doi":"10.3390/jpm2020050","title":"Infectious Disease Management through Point-of-Care Personalized Medicine Molecular Diagnostic Technologies","year":2012,"lang":"en","type":"review","venue":"Journal of Personalized Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"","keywords":"Medicine; Infectious disease (medical specialty); Reimbursement; Intensive care medicine; Personalized medicine; Point of care; Disease; Turnaround time; Medical laboratory; Point-of-care testing; Antimicrobial; Molecular diagnostics; Diagnostic test; Health care; Bioinformatics; Pathology; Pediatrics; Computer science; Biology; Microbiology","score_opus":0.03734047466988662,"score_gpt":0.3449330777125451,"score_spread":0.3075926030426585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024946086","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003883505,0.9951339,0.0011021579,0.0006711066,0.0010064752,0.0007119122,0.000034956993,0.000032063468,0.0009190832],"genre_scores_gemma":[0.00400861,0.9931946,0.00082361617,0.00014811417,0.0009847791,0.00004429466,0.00034858796,0.00007195356,0.0003754602],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99661255,0.00035523658,0.0015775122,0.00044813385,0.00064256723,0.00036402154],"domain_scores_gemma":[0.99635017,0.0002476775,0.0018983005,0.00066304504,0.0006086382,0.00023219088],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00091240293,0.0005545084,0.0020444223,0.00034474107,0.00008414676,0.000014380825,0.00060275657,0.0003655748,0.0003409393],"category_scores_gemma":[0.0034968047,0.00038270577,0.00073178933,0.00038709756,0.0008894585,0.00001789638,0.00018103755,0.00044185575,0.0000060878992],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050513184,0.00050945865,0.00022466532,0.066615574,0.0031796219,0.00046743845,0.0022316864,0.0000015012374,0.0058822003,0.004383636,0.0070648305,0.90893424],"study_design_scores_gemma":[0.002221324,0.0006680745,0.00003468103,0.017576065,0.0052958108,0.0002599514,0.0019552358,3.2083676e-7,0.00007023783,0.0002886111,0.9712705,0.00035919444],"about_ca_topic_score_codex":0.000010482587,"about_ca_topic_score_gemma":0.0000021099165,"teacher_disagreement_score":0.9642057,"about_ca_system_score_codex":0.00012271017,"about_ca_system_score_gemma":0.00022500972,"threshold_uncertainty_score":0.9998625},"labels":[],"label_agreement":null},{"id":"W2027354549","doi":"10.4161/bioe.28599","title":"A commentary on the role of molecular technology and automation in clinical diagnostics","year":2014,"lang":"en","type":"article","venue":"Bioengineered","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Clinical microbiology; Microbiology; Molecular diagnostics; Identification (biology); Polymerase chain reaction; Yeast; Biology; Computational biology; Medicine; Bioinformatics; Genetics","score_opus":0.00829370322423413,"score_gpt":0.25205211000348254,"score_spread":0.24375840677924843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027354549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970975,0.0001630804,0.0003563568,0.0021467754,0.000049612707,0.00010069633,0.000004164636,0.000010247214,0.00007157533],"genre_scores_gemma":[0.99911046,0.00005595986,0.00035223665,0.0004050972,0.000033734013,0.000007988036,0.000025866455,0.0000049948353,0.0000036445176],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995387,0.00006286843,0.00018506209,0.000117232805,0.000033921875,0.000062218365],"domain_scores_gemma":[0.9996488,0.000063574116,0.000041527514,0.00020576276,0.000023919618,0.000016400505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028426596,0.000049134862,0.000071446375,0.000047620746,0.000013003302,0.0000058143323,0.00007551307,0.00008571719,0.000002639528],"category_scores_gemma":[0.0008150234,0.000040144707,0.000019885127,0.00008137006,0.00005707672,9.4524677e-7,0.000036905796,0.000052289495,0.0000013313744],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015993302,0.000091853,0.04699176,0.000009102397,0.000012970758,2.4730946e-7,0.0000195973,0.000016846185,0.93422836,0.004952747,0.00077913003,0.012881418],"study_design_scores_gemma":[0.0010998228,0.0007273773,0.23783377,0.00006803782,0.000021797163,0.000003903453,0.00021245757,0.01089561,0.71495533,0.002981333,0.030930296,0.00027027196],"about_ca_topic_score_codex":0.0000066743282,"about_ca_topic_score_gemma":0.000007335893,"teacher_disagreement_score":0.21927302,"about_ca_system_score_codex":0.0000030187737,"about_ca_system_score_gemma":0.0000054136303,"threshold_uncertainty_score":0.16370536},"labels":[],"label_agreement":null},{"id":"W2028298716","doi":"10.1128/aem.03147-14","title":"Erratum for Maheux et al., Abilities of the mCP Agar Method and CRENAME Alpha Toxin-Specific Real-Time PCR Assay To Detect Clostridium perfringens Spores in Drinking Water","year":2014,"lang":"en","type":"erratum","venue":"Applied and Environmental Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministère des Ressources naturelles et des Forêts; Université Laval","funders":"","keywords":"Clostridium perfringens; Microbiology; Spore; Agar; Clostridiaceae; Clostridium; Toxin; Alpha (finance); Biology; Chemistry; Bacteria; Medicine; Genetics","score_opus":0.007906284896915756,"score_gpt":0.22187688043714357,"score_spread":0.21397059554022782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028298716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99469906,0.0004587204,0.0003182952,0.0007982323,0.001321551,0.0010098792,0.00036796584,0.000013334147,0.001012943],"genre_scores_gemma":[0.9807966,0.0013649275,0.003542801,0.0012173771,0.0003100695,0.00014529639,0.0037656722,0.000091279566,0.008765983],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981682,0.0001953628,0.00044490056,0.00078986806,0.000046676243,0.00035503766],"domain_scores_gemma":[0.9992466,0.0000730327,0.00015057893,0.00045943374,0.000010194175,0.00006017674],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007161049,0.00032823175,0.00045410104,0.000063802305,0.00010554636,0.00003106292,0.0002345866,0.0004603541,0.000041902855],"category_scores_gemma":[0.000028785355,0.00024816187,0.000103297345,0.000027194434,0.0002849203,0.0000033070123,0.00045723649,0.00024865931,0.0000054800316],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000077599376,0.00002715947,0.0002419898,0.000051369843,0.00003344391,2.2219119e-7,0.00023480014,0.0000036092852,0.95796424,0.000020836138,0.040427104,0.0009175998],"study_design_scores_gemma":[0.0004835978,0.00017483605,0.004080486,0.000043562828,0.000029453726,0.000023525412,0.0001571571,0.000006361317,0.49159434,0.00017555438,0.50285375,0.0003773908],"about_ca_topic_score_codex":0.00003313831,"about_ca_topic_score_gemma":0.000087963504,"teacher_disagreement_score":0.46636993,"about_ca_system_score_codex":0.000039677805,"about_ca_system_score_gemma":0.000020948335,"threshold_uncertainty_score":0.9999971},"labels":[],"label_agreement":null},{"id":"W2029569830","doi":"10.1016/j.mimet.2005.04.006","title":"Enumeration of specific bacterial populations in complex intestinal communities using quantitative PCR based on the chaperonin-60 target","year":2005,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Plant Biotechnology Institute; University of Saskatchewan","funders":"Ministry of Agriculture - Saskatchewan","keywords":"Clostridium perfringens; Enumeration; Biology; DNA extraction; Amplicon; Bacteria; Microbiology; Lactobacillus reuteri; Polymerase chain reaction; Gene; Computational biology; Biochemistry; Lactobacillus; Genetics","score_opus":0.2883923736300329,"score_gpt":0.4217181568056472,"score_spread":0.13332578317561433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029569830","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9333302,0.000069496855,0.06588255,0.00040640647,0.00014553952,0.000099427394,0.000014894379,0.0000023124348,0.000049216964],"genre_scores_gemma":[0.63606244,0.000007198783,0.3636707,0.000103659266,0.000103089886,8.8021415e-7,0.000044151544,0.0000039442593,0.0000039164433],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976271,0.0015190458,0.0005893193,0.00009966285,0.000052430336,0.00011247745],"domain_scores_gemma":[0.9988484,0.00032295723,0.00042359525,0.00016484111,0.00021306759,0.000027169268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001886041,0.00010356587,0.00021867387,0.00007288219,0.0000896638,0.000028428569,0.00020527963,0.00009110785,0.0002462843],"category_scores_gemma":[0.0008268243,0.000069229194,0.000104118786,0.00009878939,0.00015952052,0.000008881347,0.00004279492,0.00019483236,0.0000010732062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002232857,0.00013475472,0.0021150764,0.000003428258,0.0000075941107,3.3986643e-7,0.00011490517,0.0026704755,0.9934616,0.00023777776,0.00007354249,0.000957216],"study_design_scores_gemma":[0.0018342717,0.0021274802,0.13115583,0.00019599394,0.00003585749,0.000095490745,0.0015698196,0.02669285,0.82079434,0.0006927765,0.014390186,0.00041507962],"about_ca_topic_score_codex":0.0000118168045,"about_ca_topic_score_gemma":0.000026202724,"teacher_disagreement_score":0.29778814,"about_ca_system_score_codex":0.000033972945,"about_ca_system_score_gemma":0.000044359324,"threshold_uncertainty_score":0.28230846},"labels":[],"label_agreement":null},{"id":"W2030035506","doi":"10.1093/jac/48.1.127","title":"Susceptibility of the Bacteroides fragilis group to newer quinolones and other standard anti-anaerobic agents","year":2001,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Victoria Hospital","funders":"","keywords":"Trovafloxacin; Bacteroides fragilis; Ticarcillin; Imipenem; Microbiology; Clavulanic acid; Cefoxitin; Metronidazole; Clindamycin; Ertapenem; Medicine; Ciprofloxacin; Antibiotics; Biology; Amoxicillin; Bacteria; Antibiotic resistance","score_opus":0.01591534275788974,"score_gpt":0.2651657250723242,"score_spread":0.24925038231443447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030035506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976899,0.000060121798,0.00036994467,0.0013273183,0.00032669265,0.00016701272,0.000020316822,0.0000043035884,0.00003437285],"genre_scores_gemma":[0.9962662,0.0001766088,0.0014468161,0.0017393669,0.00021084434,4.8440864e-7,0.0000028362115,0.000021351927,0.0001354825],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886775,0.00010538776,0.00050368154,0.00021368617,0.00013932823,0.00017018766],"domain_scores_gemma":[0.99896413,0.0000146798975,0.0003614826,0.00033522293,0.00024504855,0.00007941154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004675729,0.0001456841,0.0002761902,0.00005457406,0.00007740163,0.000051128474,0.0002859686,0.00011009904,0.000106312575],"category_scores_gemma":[0.00012893188,0.00010710811,0.00017174492,0.00014038052,0.00013440834,0.000013537014,0.00006684689,0.00010647886,0.0000012344212],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002969136,0.00011500253,0.114686325,0.000015062031,0.000052060703,6.8684e-7,0.00018435111,0.0000064573765,0.88055867,0.000004317617,0.0027447355,0.0013354198],"study_design_scores_gemma":[0.0012298826,0.0004086411,0.28246126,0.00007818171,0.000024629011,0.000086691725,0.00008696963,0.0000026134762,0.66668385,0.000029575935,0.04873367,0.00017401768],"about_ca_topic_score_codex":0.000046780362,"about_ca_topic_score_gemma":0.00015538356,"teacher_disagreement_score":0.21387479,"about_ca_system_score_codex":0.000019840318,"about_ca_system_score_gemma":0.000052325493,"threshold_uncertainty_score":0.4367742},"labels":[],"label_agreement":null},{"id":"W2030481167","doi":"10.1128/aac.05622-11","title":"First National Survey of Antibiotic Susceptibility of the Bacteroides fragilis Group: Emerging Resistance to Carbapenems in Argentina","year":2012,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fundación Alberto J. Roemmers; Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Ertapenem; Microbiology; Imipenem; Doripenem; Cefoxitin; Piperacillin; Biology; Sulbactam; Tazobactam; Tigecycline; Bacteroides thetaiotaomicron; Antibiotic resistance; Antibiotics; Bacteroides; Bacteria; Pseudomonas aeruginosa","score_opus":0.023952226549488476,"score_gpt":0.27254922606868776,"score_spread":0.24859699951919928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030481167","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99910825,0.000035274756,0.000027943588,0.00033130724,0.0001650196,0.00019883338,0.000055050932,0.0000029240791,0.000075408236],"genre_scores_gemma":[0.99894303,0.0000871816,0.00025496137,0.00047165822,0.000047848687,0.0000013833894,0.00005174611,0.000011833454,0.00013035901],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990559,0.00009711154,0.00033076253,0.00022936963,0.00010683497,0.00017997526],"domain_scores_gemma":[0.99942034,0.000021737238,0.00014269447,0.00023613923,0.00013518985,0.000043870798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006419903,0.0001088761,0.00016470172,0.00003517422,0.00006242625,0.000013803798,0.00016506728,0.00007230616,0.000032285297],"category_scores_gemma":[0.00017170042,0.00009256798,0.00005752558,0.00018800129,0.00008603094,0.000010584891,0.00007434434,0.00004682253,7.9581696e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004740855,0.00015261263,0.5794187,0.00004045551,0.000010867168,1.8596944e-8,0.00015610462,0.0000026502946,0.4192328,0.000009402504,0.0008160537,0.00011292295],"study_design_scores_gemma":[0.0002820767,0.00001875589,0.8741267,0.00004077584,0.000002924808,5.312566e-7,0.000019649577,0.000005676804,0.123453215,0.00000538477,0.0019593304,0.00008499754],"about_ca_topic_score_codex":0.0004825976,"about_ca_topic_score_gemma":0.004072458,"teacher_disagreement_score":0.29577956,"about_ca_system_score_codex":0.000014374427,"about_ca_system_score_gemma":0.000023428252,"threshold_uncertainty_score":0.37748125},"labels":[],"label_agreement":null},{"id":"W2031064774","doi":"10.1136/bmj.h2113","title":"A man with rust coloured urine and normocytic anaemia","year":2015,"lang":"en","type":"article","venue":"BMJ","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"","keywords":"Urine; Rust (programming language); Medicine; Internal medicine; Computer science","score_opus":0.02641804135859986,"score_gpt":0.28008982188533743,"score_spread":0.25367178052673756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031064774","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977069,0.00004779374,0.0000700843,0.00081736717,0.000050431812,0.00013715979,0.0000033371903,0.0000124857415,0.0011544359],"genre_scores_gemma":[0.99601376,0.0000032454955,0.002062363,0.00021723585,0.00013594267,0.000011161843,0.000049836744,0.0000074800832,0.0014989721],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99957883,0.000022142956,0.00009396206,0.0001614092,0.00005277537,0.00009087645],"domain_scores_gemma":[0.99961346,0.0000032547894,0.00003897982,0.0001881455,0.000071048555,0.00008512473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016404162,0.000057878206,0.000060516515,0.000012254538,0.00003307818,0.000029002958,0.00004988834,0.000045755125,0.000010060345],"category_scores_gemma":[0.00012758789,0.000049152233,0.000010389791,0.000037328275,0.000040998573,0.0000020908913,0.000040749117,0.000027480764,0.00000916955],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046803214,0.00009896758,0.060464993,0.000044253153,0.000058825546,0.000019293686,0.0003799507,0.000013065359,0.9029784,0.00018560728,0.03104269,0.0042459173],"study_design_scores_gemma":[0.0063982075,0.002007171,0.47700837,0.00006298034,0.000095327785,0.00046722346,0.0012774324,0.00052587845,0.13641332,0.0001482845,0.3745855,0.0010103084],"about_ca_topic_score_codex":0.00003555286,"about_ca_topic_score_gemma":0.00010658595,"teacher_disagreement_score":0.7665651,"about_ca_system_score_codex":0.0000087017615,"about_ca_system_score_gemma":0.000060729973,"threshold_uncertainty_score":0.20043698},"labels":[],"label_agreement":null},{"id":"W2031290408","doi":"10.1139/w00-003","title":"Effects of non-ionic surfactants on the uptake and hydrolysis of fluoresceindiacetate by alkane-oxidizing bacteria","year":2000,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Norges Forskningsråd","keywords":"Alkane; Oxidizing agent; Bacteria; Chemistry; Hydrolysis; Ionic bonding; Ionic liquid; Organic chemistry; Biology; Ion; Hydrocarbon; Catalysis","score_opus":0.0050194571131286095,"score_gpt":0.19469608807969588,"score_spread":0.18967663096656726,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031290408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99886835,0.0006179106,0.0000034857383,0.00019164104,0.0001304224,0.00008897896,0.000060661805,6.7265677e-7,0.00003787592],"genre_scores_gemma":[0.9993821,0.0001635553,0.00013430275,0.00012609744,0.00003668734,7.2433863e-7,0.000026599608,0.000009014841,0.00012095123],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991519,0.00013403053,0.000379033,0.0001340674,0.000023618855,0.00017737345],"domain_scores_gemma":[0.9993285,0.000056822773,0.00024328013,0.00016188055,0.0000885594,0.000120970675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003419191,0.00009939458,0.0002252639,0.000058692884,0.00006113857,0.000012632829,0.00018549098,0.00011678346,0.0001479867],"category_scores_gemma":[0.00015787593,0.000076527795,0.00008082266,0.00006162674,0.00018046758,0.000003880956,0.000009583622,0.00009619676,0.0000030502533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004487794,0.000013216197,0.0007281885,0.000019355133,0.000064929496,0.0000029805312,0.00009893919,0.0000049248474,0.99562633,0.0000024151045,0.0008557235,0.0025381001],"study_design_scores_gemma":[0.00040385165,0.00029517422,0.021345798,0.00005343284,0.00003377083,0.00007835777,0.000031718046,0.000004229616,0.97144514,0.000008899381,0.0062160892,0.000083561936],"about_ca_topic_score_codex":0.00038067997,"about_ca_topic_score_gemma":0.0011398975,"teacher_disagreement_score":0.024181232,"about_ca_system_score_codex":0.000014727501,"about_ca_system_score_gemma":0.00019735207,"threshold_uncertainty_score":0.3120713},"labels":[],"label_agreement":null},{"id":"W2031406142","doi":"10.1638/03-124.1","title":"FATAL CLOSTRIDIAL ENTEROTOXEMIA (CLOSTRIDIUM GLYCOLICUM) IN AN ORNATE NILE MONITOR (VARANUS ORNATUS)","year":2006,"lang":"en","type":"article","venue":"Journal of Zoo and Wildlife Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Zoo","funders":"","keywords":"Biology; Clostridium perfringens; Veterinary medicine; Clostridium; Feces; Microbiology; Medicine; Bacteria","score_opus":0.011537835431806349,"score_gpt":0.26929837624475134,"score_spread":0.25776054081294497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031406142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99715793,0.0004370563,0.000076635355,0.0013447115,0.00065260316,0.00012816156,0.000009652381,0.000005179521,0.00018809014],"genre_scores_gemma":[0.9960528,0.00016336447,0.00018730179,0.00043269293,0.002949937,0.0000024020992,0.00005422101,0.000013415242,0.00014388039],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99866265,0.00009633853,0.00064369495,0.0002039408,0.00020012927,0.00019323375],"domain_scores_gemma":[0.99917376,0.000023399034,0.00030601476,0.00017591073,0.00017601796,0.00014487046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005101077,0.00014554354,0.0002751035,0.00012391196,0.000053511045,0.000033473545,0.00016401302,0.00012763079,0.000033711985],"category_scores_gemma":[0.00023206111,0.00011592972,0.000055623277,0.00011003368,0.00011200949,0.00002180314,0.000038687158,0.0001986036,0.0000016111898],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044273864,0.00014679515,0.075667985,0.000020751526,0.000015181284,0.000042047337,0.0000746582,0.000010437994,0.9130207,0.000016936483,0.0084145535,0.0021272702],"study_design_scores_gemma":[0.016184673,0.005675971,0.56058615,0.00062127743,0.00016359425,0.0011078919,0.000777887,0.0002636188,0.34965256,0.00052945205,0.06362576,0.0008111562],"about_ca_topic_score_codex":0.00025185337,"about_ca_topic_score_gemma":0.00014640113,"teacher_disagreement_score":0.5633681,"about_ca_system_score_codex":0.000024283077,"about_ca_system_score_gemma":0.00005955625,"threshold_uncertainty_score":0.47274768},"labels":[],"label_agreement":null},{"id":"W2031816739","doi":"10.1016/j.diagmicrobio.2010.10.026","title":"Prevalence of antimicrobial resistant pathogens from blood cultures from Canadian hospitals: results of the CANWARD 2007–2009 study","year":2011,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Hospital Edmonton; University of Alberta Hospital; Health Sciences Centre; University of Manitoba; Diagnostic Services Manitoba","funders":"","keywords":"Microbiology; Enterococcus faecalis; Linezolid; Streptococcus pneumoniae; Medicine; Klebsiella pneumoniae; Ertapenem; Piperacillin; Staphylococcus aureus; Enterobacter cloacae; Meropenem; Methicillin-resistant Staphylococcus aureus; Blood culture; Enterococcus; Pseudomonas aeruginosa; Vancomycin; Antibiotic resistance; Biology; Antibiotics; Escherichia coli; Bacteria","score_opus":0.006898944547688992,"score_gpt":0.209820186377283,"score_spread":0.202921241829594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031816739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907525,0.0008429766,0.000002816524,0.000029207287,0.0003276827,0.00040705185,0.0075277193,0.000007533001,0.00010248615],"genre_scores_gemma":[0.999139,0.00022517926,0.000037803224,0.0001183711,0.0000706936,0.0000123879345,0.000349731,0.000009082343,0.00003774654],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987704,0.00025296566,0.00036619432,0.0004068723,0.000030150066,0.00017338872],"domain_scores_gemma":[0.99893594,0.000107642874,0.00020557478,0.00047302878,0.00014351883,0.00013427412],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015504065,0.00014654304,0.00017579633,0.000032465843,0.000116498995,0.000009884051,0.000200668,0.00012748013,0.000070168186],"category_scores_gemma":[0.00205673,0.00011656796,0.00007860408,0.000060655624,0.00025252847,0.000005021303,0.00009576449,0.00007529146,0.0000022246643],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011883085,0.00028074902,0.51936215,0.000019537007,0.000077972814,0.0000042095735,0.00034552283,9.0776484e-7,0.47891605,0.000004504961,0.0008376621,0.00003192195],"study_design_scores_gemma":[0.00082096574,0.00020554061,0.92526555,0.000053179105,0.00026280287,0.0000021498256,0.000098182,4.2809214e-7,0.07293771,0.00004229714,0.00017326903,0.00013790815],"about_ca_topic_score_codex":0.05892345,"about_ca_topic_score_gemma":0.03978223,"teacher_disagreement_score":0.40597832,"about_ca_system_score_codex":0.000008890749,"about_ca_system_score_gemma":0.00018352132,"threshold_uncertainty_score":0.9777392},"labels":[],"label_agreement":null},{"id":"W2033251153","doi":"10.1016/s1369-5274(02)00362-4","title":"Toward rapid real-time molecular diagnostic to guide smart use of antimicrobials","year":2002,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec; Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Biology; Antibiotic resistance; Antibiotics; Antimicrobial; Intensive care medicine; Risk analysis (engineering); Data science; Computer science; Microbiology; Medicine","score_opus":0.11649927737223649,"score_gpt":0.3648223400942996,"score_spread":0.24832306272206311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033251153","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0024455092,0.99066126,0.00017341392,0.000041134383,0.0039747553,0.0016048462,0.0010235035,0.000029434674,0.000046141147],"genre_scores_gemma":[0.000057842924,0.99219203,0.0009884663,0.00002945398,0.00026002552,0.00009133488,0.006153812,0.000061963845,0.00016506777],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99624884,0.00075739576,0.0015047624,0.0009884163,0.000053917633,0.0004466604],"domain_scores_gemma":[0.9980548,0.0002215509,0.0005566445,0.0008729748,0.00017858364,0.00011542555],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004410299,0.00049528404,0.001400889,0.00031701123,0.000034557623,0.000041704247,0.00054306147,0.0005882357,0.00019852546],"category_scores_gemma":[0.0018244447,0.0004927953,0.00045215516,0.00032614876,0.00013816815,0.0000062216423,0.000408718,0.00023453143,0.00018824483],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021003034,0.0004057634,0.00009777871,0.00976968,0.00013722797,0.0000025778854,0.0000604153,0.0000077623845,0.6009585,0.000037212787,0.07106438,0.31743768],"study_design_scores_gemma":[0.00020341258,0.00011820335,0.000027085493,0.0044914423,0.000065141925,0.00004701109,0.0000020488897,0.0000011052704,0.0015751998,0.000001556716,0.99301845,0.00044934402],"about_ca_topic_score_codex":0.000036970676,"about_ca_topic_score_gemma":0.000003362671,"teacher_disagreement_score":0.9219541,"about_ca_system_score_codex":0.000076405035,"about_ca_system_score_gemma":0.00019664127,"threshold_uncertainty_score":0.99975234},"labels":[],"label_agreement":null},{"id":"W2035907539","doi":"10.1007/s11908-013-0350-4","title":"The Potential for PCR Based Testing to Improve Diagnosis and Treatment of Sepsis","year":2013,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Sepsis; Gold standard (test); Intensive care medicine; Medicine; Antibiotics; Diagnostic test; Blood culture; Antibiotic therapy; Disease; Immunology; Internal medicine; Pediatrics; Microbiology; Biology","score_opus":0.022661690022765028,"score_gpt":0.28452535483582453,"score_spread":0.2618636648130595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035907539","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971783,0.00048901443,0.0005004117,0.00017836122,0.0006266234,0.00096065324,0.000025817424,0.000018426392,0.00002234647],"genre_scores_gemma":[0.9985364,0.00007301542,0.00011529926,0.000025110574,0.00017503429,0.0009483636,0.000053588818,0.000011360573,0.00006179959],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991748,0.00003095039,0.00027291206,0.0002954228,0.000070782975,0.00015513158],"domain_scores_gemma":[0.998981,0.00007777954,0.00017998587,0.00031424538,0.00028227473,0.00016471693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012268648,0.00010572663,0.00009872171,0.000022855535,0.0001611609,0.00007696627,0.00003119899,0.0000319327,0.000009193942],"category_scores_gemma":[0.001272487,0.00008051523,0.00009280601,0.000055937886,0.000029001534,0.0000043162136,0.000029906134,0.000016463784,0.0000015491353],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003517772,0.0004706909,0.6012507,0.00009617248,0.000054207998,0.0000019150004,0.000014991271,0.00008186211,0.20029819,0.00000394111,0.001295273,0.1963969],"study_design_scores_gemma":[0.0014580238,0.0017001773,0.83190304,0.000113177135,0.00041385883,0.000019663967,0.000043867,0.002486974,0.101098545,0.00083095825,0.05925525,0.0006764549],"about_ca_topic_score_codex":0.00007164511,"about_ca_topic_score_gemma":0.000018622066,"teacher_disagreement_score":0.23065236,"about_ca_system_score_codex":0.000032879092,"about_ca_system_score_gemma":0.00008460094,"threshold_uncertainty_score":0.3283316},"labels":[],"label_agreement":null},{"id":"W2036661570","doi":"10.1016/j.ijantimicag.2004.06.017","title":"Screening of isolates from faeces for carbapenem-resistant Bacteroides strains; existence of strains with novel types of resistance mechanisms","year":2004,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Research Foundation; Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Microbiology; Biology; Feces; Carbapenem; Bacteroides; Gene; Insertion sequence; Bacteria; Genetics; Antibiotics","score_opus":0.025801886535202722,"score_gpt":0.2724579698714849,"score_spread":0.2466560833362822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036661570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95733863,0.000034907353,0.041565355,0.00012693615,0.00018984669,0.00008945885,0.00062482513,0.0000017132734,0.000028328142],"genre_scores_gemma":[0.95335555,0.00002605375,0.046376582,0.000037919293,0.00007953261,6.1321106e-7,0.000077793266,0.000010612365,0.00003536555],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897194,0.000018383644,0.0005904556,0.00014740105,0.0001814393,0.00009041042],"domain_scores_gemma":[0.99812055,0.000020794654,0.00087319355,0.000114476,0.00083686534,0.00003415369],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018423915,0.000100318044,0.0002169217,0.000069680726,0.00002350236,0.000021444768,0.0003628821,0.000059970174,0.000014032561],"category_scores_gemma":[0.00013738978,0.00008859017,0.00012769298,0.000046536577,0.00009670853,0.000021240423,0.000042131665,0.00004883209,9.668733e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068295916,0.00016633562,0.0005135192,0.000038006252,0.000269177,0.0000015688902,0.0001522952,0.0004167443,0.99730116,0.00023470224,0.000021269474,0.00020224987],"study_design_scores_gemma":[0.0014221093,0.00025639916,0.015530714,0.00043893192,0.00004297222,0.00000789993,0.00017679864,0.000014641925,0.98169065,0.00025928166,0.0000706815,0.000088945395],"about_ca_topic_score_codex":0.000104588486,"about_ca_topic_score_gemma":0.00023092532,"teacher_disagreement_score":0.015610548,"about_ca_system_score_codex":0.000016314209,"about_ca_system_score_gemma":0.000121771925,"threshold_uncertainty_score":0.3612602},"labels":[],"label_agreement":null},{"id":"W2036740861","doi":"10.1016/j.ajic.2013.04.013","title":"Algorithm to reduce unnecessary isolation days in patients with a history of colonization by antimicrobial-resistant organisms","year":2013,"lang":"en","type":"article","venue":"American Journal of Infection Control","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Health Sciences","funders":"","keywords":"Carriage; Colonization; Medicine; Isolation (microbiology); Antibiotics; Organism; Antibiotic sensitivity; Antimicrobial; Antibiotic resistance; Intensive care medicine; Microbiology; Biology; Pathology","score_opus":0.002907593772677554,"score_gpt":0.19424334751706293,"score_spread":0.19133575374438538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036740861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9595962,0.000014333864,0.039850116,0.00014232272,0.00016068204,0.00019961935,0.000007909284,0.0000033204522,0.000025467589],"genre_scores_gemma":[0.99779236,0.000006761064,0.0018403393,0.00022171438,0.000048692724,0.000004259155,0.00002826634,0.0000095385985,0.000048042504],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992125,0.000113495356,0.0003722786,0.0001189741,0.00009510243,0.000087627996],"domain_scores_gemma":[0.9986704,0.000015329386,0.00053643173,0.000102961865,0.000619675,0.000055194505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017520685,0.00007622973,0.00017379566,0.000097515025,0.000019482828,0.000014405489,0.00005495335,0.000034543395,0.000028944598],"category_scores_gemma":[0.00015610234,0.00006966331,0.00003256655,0.00016122543,0.000059134127,0.000022332297,0.000009140406,0.00005958599,0.0000020440416],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023635749,0.00016026133,0.10435391,0.000004845195,0.000027414195,1.17244966e-7,0.00006823738,0.0001209261,0.88196623,8.2756657e-7,0.0019605092,0.011100365],"study_design_scores_gemma":[0.0031722884,0.00342441,0.9561272,0.000053828415,0.000040533883,0.000005986257,0.000056867022,0.0002872465,0.034458786,0.0000055302107,0.0021568462,0.00021043966],"about_ca_topic_score_codex":0.0003903763,"about_ca_topic_score_gemma":0.0000310337,"teacher_disagreement_score":0.8517733,"about_ca_system_score_codex":0.00012326821,"about_ca_system_score_gemma":0.000119153134,"threshold_uncertainty_score":0.28407872},"labels":[],"label_agreement":null},{"id":"W2039277347","doi":"10.5539/jfr.v2n3p104","title":"Evaluation of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry for Rapid Identification of Bacteria in Processed Soybean Products","year":2013,"lang":"en","type":"article","venue":"Journal of Food Research","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Bacteria; Mass spectrometry; Chromatography; Matrix-assisted laser desorption/ionization; Matrix (chemical analysis); Chemistry; 16S ribosomal RNA; Microbiological culture; Food science; Desorption; Microbiology; Biology; Genetics","score_opus":0.07466980635016919,"score_gpt":0.365671164682521,"score_spread":0.2910013583323518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039277347","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978069,0.00020347389,0.00092150614,0.00021683631,0.00008991702,0.00072167616,0.000012352887,0.0000016362484,0.000025671492],"genre_scores_gemma":[0.99686885,0.00003252665,0.002758246,0.0000014488785,0.00011889926,0.000024034616,0.000077278724,0.000011966858,0.000106773485],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99758184,0.00050163193,0.0009269254,0.00017942261,0.0006674799,0.00014270416],"domain_scores_gemma":[0.9911665,0.000063932996,0.00077379576,0.00025068718,0.0077050705,0.000040050905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006733296,0.000072012415,0.00019765212,0.00040936464,0.000036721278,0.000040525123,0.00021206528,0.00010663928,0.000091101225],"category_scores_gemma":[0.0043013385,0.000066049135,0.00006737062,0.00064042106,0.000074894844,0.000044652006,0.00002684313,0.00009874771,0.000002638584],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014925159,0.0002472424,0.0006827189,0.0002581213,0.000048095942,4.1815788e-8,0.00009840925,0.00003410378,0.996294,0.000011161806,0.00017444973,0.0020023992],"study_design_scores_gemma":[0.0008187048,0.0005882337,0.04652249,0.00006453268,0.00003126824,0.0000032378668,0.00013832549,0.00072183594,0.95060337,0.0004384178,0.00001723239,0.000052342377],"about_ca_topic_score_codex":0.000006094824,"about_ca_topic_score_gemma":0.0000065103195,"teacher_disagreement_score":0.04583977,"about_ca_system_score_codex":0.000060987997,"about_ca_system_score_gemma":0.0004476223,"threshold_uncertainty_score":0.51494145},"labels":[],"label_agreement":null},{"id":"W2039442221","doi":"10.7196/samj.8183","title":"Community- versus healthcare-acquired bloodstream infections at Groote Schuur Hospital, Cape Town, South Africa","year":2015,"lang":"en","type":"article","venue":"South African Medical Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Health Laboratory Service","keywords":"Medicine; Epidemiology; Ciprofloxacin; Antibiotics; Ceftriaxone; Intensive care unit; Gentamicin; Blood culture; Internal medicine; Emergency medicine; Pediatrics; Microbiology; Biology","score_opus":0.04860417490472241,"score_gpt":0.2911127379697805,"score_spread":0.24250856306505808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039442221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928543,0.0003320946,0.00044344008,0.0026861501,0.0017656098,0.0001620555,0.00004949834,0.00006123176,0.0016456097],"genre_scores_gemma":[0.997557,0.000025148724,0.00036103814,0.00024607356,0.0010852547,0.000013953601,0.00010817605,0.000032688808,0.00057068194],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99715066,0.0007402992,0.0005838206,0.00032721824,0.00065666944,0.00054134324],"domain_scores_gemma":[0.9971165,0.00005855586,0.00032532396,0.0005965386,0.0004367568,0.0014663162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001630189,0.00024240736,0.00028344692,0.000099100485,0.0007614988,0.00013958904,0.00054894696,0.0003151685,0.00026113723],"category_scores_gemma":[0.0047853873,0.00022280526,0.00018668415,0.000270553,0.0003480359,0.000013830843,0.00037063897,0.0006929296,0.000076876604],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0066552614,0.010110959,0.33457094,0.00041402277,0.0031906974,0.0005960052,0.27006945,0.00016373757,0.13106921,0.0006866863,0.19097523,0.051497802],"study_design_scores_gemma":[0.051525,0.029801479,0.06649881,0.00080606824,0.0011534728,0.0023842212,0.25834638,0.0007138492,0.0116338255,0.0022408692,0.56843776,0.006458279],"about_ca_topic_score_codex":0.00013431764,"about_ca_topic_score_gemma":0.00026919154,"teacher_disagreement_score":0.37746254,"about_ca_system_score_codex":0.00014061305,"about_ca_system_score_gemma":0.0007783996,"threshold_uncertainty_score":0.9085735},"labels":[],"label_agreement":null},{"id":"W2039545947","doi":"10.1128/jcm.03088-12","title":"Multilaboratory Study of the Biomic Automated Well-Reading Instrument versus MicroScan WalkAway for Reading MicroScan Antimicrobial Susceptibility and Identification Panels","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Grand River Hospital","funders":"","keywords":"Gram; Microbiology; Gram-positive bacteria; Biology; Antimicrobial; Bacteria; Gram-negative bacteria; Escherichia coli; Genetics","score_opus":0.04179501680538904,"score_gpt":0.35192156412511344,"score_spread":0.3101265473197244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039545947","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965017,0.0000333399,0.00006300838,0.0002564666,0.0022311618,0.0008372031,0.000057338708,0.000013229404,0.0000065865734],"genre_scores_gemma":[0.99875605,0.000037600003,0.0007277561,0.00009929139,0.0002445324,0.000009239162,0.00003717493,0.00002047939,0.00006790085],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965893,0.00061379845,0.002035344,0.00045032907,0.000054071308,0.00025712472],"domain_scores_gemma":[0.996746,0.00029007648,0.0016686918,0.0004784427,0.0007128595,0.00010392132],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001976641,0.00019842136,0.0005473088,0.000079945676,0.00015942029,0.00006769519,0.0004221772,0.000308288,0.000016622282],"category_scores_gemma":[0.0016228718,0.00015129332,0.00024595676,0.00013394459,0.0003827286,0.00002277168,0.00018353801,0.0002310353,0.000004033949],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046545887,0.0004867851,0.06168768,0.00003761421,0.00013917993,1.9156681e-7,0.00013560434,0.0000041467233,0.9345891,0.0000035848716,0.0011720087,0.001278648],"study_design_scores_gemma":[0.0061455932,0.001641921,0.34180552,0.00006304124,0.00016021784,0.00004282103,0.00090209674,0.00010261497,0.6471196,0.000017022605,0.001743997,0.00025561455],"about_ca_topic_score_codex":0.00008451358,"about_ca_topic_score_gemma":0.00009126796,"teacher_disagreement_score":0.28746954,"about_ca_system_score_codex":0.00004266791,"about_ca_system_score_gemma":0.00017385959,"threshold_uncertainty_score":0.61695623},"labels":[],"label_agreement":null},{"id":"W2039627451","doi":"10.1128/aac.05823-11","title":"Prevalence of Antimicrobial Resistance among Clinical Isolates of Bacteroides fragilis Group in Canada in 2010-2011: CANWARD Surveillance Study","year":2011,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Shared Health","funders":"U.S. Food and Drug Administration","keywords":"Bacteroides fragilis; Bacteroides thetaiotaomicron; Cefoxitin; Microbiology; Clindamycin; Broth microdilution; Imipenem; Ertapenem; Moxifloxacin; Tigecycline; Metronidazole; Piperacillin; Doripenem; Medicine; Bacteroides; Biology; Antimicrobial; Antibiotic resistance; Antibiotics; Minimum inhibitory concentration; Bacteria","score_opus":0.022353328253962277,"score_gpt":0.2526009308196073,"score_spread":0.23024760256564505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039627451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99931043,0.000036164853,0.000008558687,0.00005303921,0.00018658361,0.00030926205,0.00005408376,0.0000030944386,0.000038765713],"genre_scores_gemma":[0.99864346,0.00069702964,0.0002512798,0.0001954739,0.000028425267,0.0000033823976,0.000018101027,0.000015657872,0.00014716522],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99845105,0.0001628019,0.0007099129,0.00041243574,0.00006631724,0.00019748692],"domain_scores_gemma":[0.99927616,0.00002307644,0.00026853403,0.00031018333,0.00007635016,0.00004566907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004550677,0.00015247164,0.00032590242,0.000045634843,0.00002506086,0.000009250598,0.00022214992,0.00009634783,0.000067526315],"category_scores_gemma":[0.000045189114,0.0001535111,0.000051914718,0.000087392335,0.00013991281,0.000012422867,0.00006070103,0.00009680396,3.366441e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024133948,0.00035509886,0.84898406,0.000108169814,0.00002398618,0.0000019030069,0.00030264992,5.4855036e-7,0.1486073,4.959176e-7,0.0011017561,0.00027269757],"study_design_scores_gemma":[0.0011009956,0.00008504705,0.96978307,0.000069364054,0.0000050896074,7.752944e-7,0.0000882675,0.0000070209535,0.028615866,0.0000024170417,0.00009689405,0.00014522235],"about_ca_topic_score_codex":0.29975984,"about_ca_topic_score_gemma":0.76627743,"teacher_disagreement_score":0.46651757,"about_ca_system_score_codex":0.000021582793,"about_ca_system_score_gemma":0.00013790533,"threshold_uncertainty_score":0.7049031},"labels":[],"label_agreement":null},{"id":"W2042418118","doi":"10.1139/w10-016","title":"Comparison of the automated Phoenix with the Vitek 2 for the identification of <i>Streptococcus pneumoniae</i>Portions of this study were presented at the 2007 American Society of Microbiology 107th General Meeting in Toronto, Ontario, Canada.","year":2010,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Phoenix; Microbiology; Identification (biology); Clinical microbiology; Gold standard (test); Biology; Medicine; Antibiotics; Pathology","score_opus":0.010571208396889405,"score_gpt":0.26634703354129796,"score_spread":0.25577582514440855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042418118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975562,0.00025568894,0.000016489494,0.0009623614,0.0003200834,0.0005926152,0.00027885832,0.0000013286212,0.000016364587],"genre_scores_gemma":[0.99949324,0.0000065344666,0.000066358814,0.00008669913,0.00004189981,0.000012710835,0.00006347416,0.000009846999,0.00021923755],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983644,0.00026567542,0.0009292711,0.00017292496,0.000051250972,0.00021651639],"domain_scores_gemma":[0.9970778,0.00014977269,0.0017079113,0.00046225617,0.0005510273,0.000051198273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00087730633,0.00012589265,0.0003366053,0.000024936886,0.00018105042,0.00000850248,0.00059831695,0.000094716605,0.00006003893],"category_scores_gemma":[0.00016644504,0.00006658583,0.00014555322,0.00012270495,0.0007207786,0.0000056325803,0.000057625355,0.00021587164,6.672675e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042047817,0.000049124534,0.19722,0.00001000898,0.00013309857,1.4368611e-7,0.001002959,0.00015030212,0.7937018,0.0000028271086,0.0076139667,0.00007372279],"study_design_scores_gemma":[0.0007337062,0.00037327834,0.29921907,0.000026744921,0.00015024359,0.00005374971,0.0063958527,0.00014592899,0.67764807,0.0000010759504,0.015129764,0.0001225076],"about_ca_topic_score_codex":0.7684849,"about_ca_topic_score_gemma":0.99809325,"teacher_disagreement_score":0.22960833,"about_ca_system_score_codex":0.00015291203,"about_ca_system_score_gemma":0.0018081054,"threshold_uncertainty_score":0.32075015},"labels":[],"label_agreement":null},{"id":"W2043808432","doi":"10.1016/s0924-8579(00)00178-3","title":"Genetic tools for the simultaneous identification of bacterial species and their antibiotic resistance genes: impact on clinical practice","year":2000,"lang":"en","type":"review","venue":"International Journal of Antimicrobial Agents","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec; Université Laval","funders":"","keywords":"Antibiotics; Antibiotic resistance; Microbiology; Bacteria; Biology; Clinical microbiology; Medicine; Chlamydia; Immunology; Genetics","score_opus":0.06737395314984619,"score_gpt":0.39518191531030267,"score_spread":0.3278079621604565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043808432","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.21052872,0.7728157,0.0019910547,0.00052103394,0.0091171805,0.002158556,0.0027315512,0.000013048332,0.00012313445],"genre_scores_gemma":[0.06330918,0.9335373,0.00058346323,0.00009812817,0.0019378172,0.0000023808784,0.0002439279,0.000033122946,0.0002546781],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973531,0.0002893036,0.0016947797,0.00031486957,0.00020705868,0.00014089078],"domain_scores_gemma":[0.9956219,0.0010760643,0.002123716,0.0003123717,0.0008072224,0.00005873296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008982925,0.00026284845,0.0006398985,0.00010140905,0.00007477167,0.00028226923,0.0007087044,0.00022411322,0.00003308723],"category_scores_gemma":[0.0025809985,0.00016768042,0.0006845948,0.000065225424,0.00014804903,0.000026953106,0.0000769486,0.0001852704,0.0000044051894],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016421267,0.00046614753,0.000042756183,0.00065658666,0.0019773166,0.00001671842,0.00007475602,0.00010808306,0.03263157,0.000009604959,0.004620831,0.9577535],"study_design_scores_gemma":[0.0005469082,0.00027024574,0.0006118373,0.001339318,0.0004099278,0.00022873953,0.00002910172,0.000018456334,0.0014246888,0.0000052971986,0.9949151,0.00020035557],"about_ca_topic_score_codex":0.0000035238552,"about_ca_topic_score_gemma":0.000005001092,"teacher_disagreement_score":0.9902943,"about_ca_system_score_codex":0.00004766454,"about_ca_system_score_gemma":0.00027574284,"threshold_uncertainty_score":0.68378097},"labels":[],"label_agreement":null},{"id":"W2043828640","doi":"10.1099/ijs.0.63715-0","title":"Dialister micraerophilus sp. nov. and Dialister propionicifaciens sp. nov., isolated from human clinical samples","year":2005,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Biology; 16S ribosomal RNA; Phylogenetic tree; Microbiology; Gene; Genetics","score_opus":0.03900911510742574,"score_gpt":0.3101561990854167,"score_spread":0.271147083977991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043828640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99478376,0.0017795515,0.000987546,0.0010934579,0.0009617624,0.00021368988,0.00013572976,0.0000073152473,0.00003717308],"genre_scores_gemma":[0.99578816,0.00017978401,0.0019304754,0.00042346396,0.0011794881,0.000004492976,0.0002591966,0.000012642257,0.00022231699],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978518,0.00031365195,0.0012755563,0.0003028425,0.0000993205,0.00015681847],"domain_scores_gemma":[0.9984476,0.000108824854,0.0006713518,0.00018761575,0.00048933586,0.0000952777],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006431521,0.00016624127,0.00040607413,0.00009126122,0.00010228152,0.00007575807,0.00028464117,0.00020994084,0.000066976034],"category_scores_gemma":[0.0003490581,0.00013433247,0.00013790531,0.00003203107,0.0002525857,0.000028717395,0.00015932789,0.0001518194,0.00001456902],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019132184,0.00016267024,0.029745162,0.0002352624,0.0003483821,0.000009391355,0.00019300373,0.0000067319447,0.9670364,0.00014479087,0.0017103007,0.00021655328],"study_design_scores_gemma":[0.024983311,0.0044160606,0.77511394,0.012948333,0.0017732522,0.028226003,0.0027254757,0.0015668081,0.027935885,0.0035983613,0.11258166,0.0041309344],"about_ca_topic_score_codex":0.00004287021,"about_ca_topic_score_gemma":0.000056483303,"teacher_disagreement_score":0.93910056,"about_ca_system_score_codex":0.000046560304,"about_ca_system_score_gemma":0.00006649527,"threshold_uncertainty_score":0.5477919},"labels":[],"label_agreement":null},{"id":"W2044212770","doi":"10.1128/jcm.01845-06","title":"<i>Clostridium glycolicum</i> Bacteremia in a Bone Marrow Transplant Patient","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Bacteremia; Bone marrow transplant; Bone marrow; Medicine; Bone marrow transplantation; Clostridiaceae; Clostridium; Clostridiales; Microbiology; Immunology; Bacteria; Biology; Antibiotics; Genetics","score_opus":0.02449307572047015,"score_gpt":0.32209316645180497,"score_spread":0.2976000907313348,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044212770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976944,0.00022664735,0.00027313773,0.00039090976,0.0011064445,0.00010099261,0.000017516268,0.0000034283205,0.00018653172],"genre_scores_gemma":[0.99739254,0.00013583266,0.0010686499,0.00076411373,0.0005204757,6.581609e-7,0.0000399224,0.000010645073,0.000067145804],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973668,0.00025464065,0.0018403814,0.00023298305,0.000041559437,0.0002636769],"domain_scores_gemma":[0.9986564,0.0001780509,0.0006457485,0.0002018468,0.00018475979,0.00013320266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023882953,0.00012217082,0.0004081237,0.00008300098,0.000024066272,0.000012351859,0.00019226127,0.00035580777,0.000056030265],"category_scores_gemma":[0.00084318407,0.000103332866,0.00025230358,0.000089905036,0.00011275686,0.0000053947892,0.00004423787,0.0003606238,0.00001033125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009465104,0.00024424307,0.047129218,0.000008055831,0.000025941768,0.000036130157,0.000038384627,0.0000015765729,0.9434871,0.000007744321,0.0011919206,0.0068831723],"study_design_scores_gemma":[0.0051947944,0.0031945473,0.20624174,0.00014452002,0.00005922483,0.002079199,0.00015564042,0.000003309358,0.5217136,0.00010984675,0.26061785,0.00048572852],"about_ca_topic_score_codex":0.000009386868,"about_ca_topic_score_gemma":0.00017440847,"teacher_disagreement_score":0.4217735,"about_ca_system_score_codex":0.000019037398,"about_ca_system_score_gemma":0.00013388511,"threshold_uncertainty_score":0.4213792},"labels":[],"label_agreement":null},{"id":"W2045508295","doi":"10.1021/ac015725f","title":"Mass Spectrometric Methods for Generation of Protein Mass Database Used for Bacterial Identification","year":2002,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Chemistry; Proteome; Mass spectrometry; Chromatography; Database; Matrix-assisted laser desorption/ionization; Biochemistry; Desorption","score_opus":0.07622710819183723,"score_gpt":0.3528671969342462,"score_spread":0.276640088742409,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045508295","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.56824994,0.000078483,0.4304091,0.00018501765,0.00011906993,0.0005810032,0.00018428892,0.000017019007,0.00017605002],"genre_scores_gemma":[0.8898559,0.000010951774,0.103876315,0.000018007846,0.0007436704,0.00016362427,0.0022081104,0.00002529541,0.003098121],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99875087,0.000048645492,0.00046729983,0.0004447621,0.000094103474,0.00019432846],"domain_scores_gemma":[0.9989436,0.0000659129,0.00019038671,0.00046724142,0.00025200847,0.000080849146],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000605932,0.00013095512,0.00018916708,0.000039590694,0.000068615795,0.000058814905,0.0001814549,0.00016307723,0.000233432],"category_scores_gemma":[0.0019968147,0.00014050078,0.00015484987,0.00017859957,0.000057861103,0.000010664828,0.000025024356,0.000050989882,0.0000030415379],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003968368,0.00007707987,0.000043648863,0.0001557989,0.000038122216,6.978913e-8,0.0000074026857,0.0000022766617,0.9977286,0.00010969781,0.00057708874,0.0012205425],"study_design_scores_gemma":[0.0005507349,0.000057774658,0.000049995564,0.0000071054187,0.000056793644,9.4759645e-7,0.000011906173,0.023278574,0.9721849,0.0002044534,0.0034481117,0.00014871593],"about_ca_topic_score_codex":0.000002856452,"about_ca_topic_score_gemma":0.0000012173621,"teacher_disagreement_score":0.32653278,"about_ca_system_score_codex":0.000026872918,"about_ca_system_score_gemma":0.000029401082,"threshold_uncertainty_score":0.5729456},"labels":[],"label_agreement":null},{"id":"W2045912172","doi":"10.1067/mic.2001.109909","title":"Nosocomial salmonellosis: Implications for microbiologic processing of stools in hospitalized patients","year":2001,"lang":"en","type":"article","venue":"American Journal of Infection Control","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Medicine; Infection control; Intensive care medicine; Cross infection; Warrant","score_opus":0.009828022619414381,"score_gpt":0.2718128896045594,"score_spread":0.261984866985145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045912172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9862864,0.00003665109,0.013102798,0.00020447768,0.00010001737,0.00022606702,0.0000134871125,0.00000348605,0.00002659096],"genre_scores_gemma":[0.9990698,0.000053197156,0.000614795,0.00011200953,0.000099545585,0.000017965578,0.000017744926,0.0000071602417,0.000007797886],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992142,0.00007884871,0.0004609578,0.00011104425,0.000033600125,0.00010135439],"domain_scores_gemma":[0.9986753,0.000031977503,0.0006778774,0.00009146011,0.00048938126,0.00003400063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026171206,0.00007054439,0.00020699222,0.000076739525,0.00003857687,0.0000157171,0.00006953401,0.000040291754,0.0000035123082],"category_scores_gemma":[0.00041223233,0.000064086984,0.00011359013,0.00013823986,0.00007434581,0.000010543496,0.000008421069,0.000051601906,3.1677422e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021772251,0.00014004605,0.51018596,0.0000049211153,0.00001870721,4.261929e-8,0.00001825774,0.000044551194,0.46789464,0.000002625032,0.000040069015,0.021432448],"study_design_scores_gemma":[0.002103107,0.0009247701,0.99100834,0.000026156555,0.000025510502,0.000009635189,0.000027023976,0.000025275032,0.004734756,0.000043259177,0.0009902033,0.000081969556],"about_ca_topic_score_codex":0.00003522511,"about_ca_topic_score_gemma":0.000019467114,"teacher_disagreement_score":0.48082238,"about_ca_system_score_codex":0.000024368353,"about_ca_system_score_gemma":0.00005960752,"threshold_uncertainty_score":0.26133913},"labels":[],"label_agreement":null},{"id":"W2047649118","doi":"10.1021/ac0490806","title":"Solid-Phase Microextraction Field Sampler","year":2004,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Solid-phase microextraction; Sorbent; Fiber; Chemistry; Sampling (signal processing); Seal (emblem); Chromatography; Sample preparation; Sample (material); Process engineering; Adsorption; Gas chromatography–mass spectrometry; Computer science; Mass spectrometry; Telecommunications","score_opus":0.0212178888106496,"score_gpt":0.3698804807352298,"score_spread":0.34866259192458016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047649118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899243,0.000025645952,0.005780675,0.0007512379,0.00006685568,0.00004622165,0.000008040917,0.000025303378,0.0033716855],"genre_scores_gemma":[0.9969458,0.000010632646,0.00049589144,0.00041810662,0.00033872962,0.0000044258827,0.00017640088,0.000010411275,0.0015996203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925125,0.000008587731,0.00019702426,0.00029464072,0.00007804302,0.0001704794],"domain_scores_gemma":[0.99945945,0.000014082865,0.000044880788,0.00030441085,0.00007156303,0.0001056337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009281488,0.00009970054,0.00009271823,0.00000893289,0.00006286315,0.000043215165,0.00011343757,0.00015568566,0.000356801],"category_scores_gemma":[0.00043326378,0.00010403816,0.00008834192,0.000061758146,0.00004251892,0.0000041671733,0.00004245045,0.00010495066,0.000044574528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036866695,0.00014022166,0.00023609227,0.000015989526,0.0000189027,0.000002343074,0.000006773979,0.000008265657,0.9977605,0.000049420094,0.0011657035,0.00055892253],"study_design_scores_gemma":[0.000631356,0.0000537293,0.00038817027,0.000008249269,0.000019326428,0.00002127949,0.000029830395,0.000057437028,0.9836311,0.0002634105,0.014754467,0.00014165968],"about_ca_topic_score_codex":0.00002742364,"about_ca_topic_score_gemma":0.000008403457,"teacher_disagreement_score":0.014129413,"about_ca_system_score_codex":0.000021860656,"about_ca_system_score_gemma":0.00005925323,"threshold_uncertainty_score":0.42425528},"labels":[],"label_agreement":null},{"id":"W2047846949","doi":"10.1515/cclm.2010.240","title":"Evaluation of the BacT/ALERT<sup>®</sup> 3D system for the implementation of in-house quality control sterility testing at Canadian Blood Services","year":2010,"lang":"en","type":"article","venue":"Clinical Chemistry and Laboratory Medicine (CCLM)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Blood Services","funders":"Canadian Blood Services","keywords":"Sterility; Quality (philosophy); Medicine; Biology; Physics","score_opus":0.052084571428694326,"score_gpt":0.3757437721753809,"score_spread":0.3236592007466866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047846949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99863106,0.00014963874,0.000007499702,0.00029745742,0.00018639749,0.0004876928,0.00017136511,0.000007089754,0.00006177948],"genre_scores_gemma":[0.99939847,0.0000060501334,0.000049168197,0.00013656788,0.00030651252,0.0000375953,0.000045007084,0.00001000929,0.000010636149],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99816126,0.0003537337,0.00083189114,0.000296709,0.00021445019,0.00014193135],"domain_scores_gemma":[0.9975206,0.00052739645,0.00042543243,0.0005016362,0.00092102395,0.00010387976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006786693,0.000111048765,0.00024429688,0.0000085558995,0.0001231528,0.000009361664,0.00020843951,0.00018025906,0.000046041347],"category_scores_gemma":[0.003705409,0.00007451865,0.000050190836,0.00011907271,0.00028690018,0.0000069482817,0.00004662229,0.00015425033,2.0372524e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007197018,0.00003644568,0.24774106,0.00038853768,0.00004645403,1.08008834e-7,0.00016128534,0.000014098413,0.74985325,0.0000034543034,0.000032714666,0.0016505969],"study_design_scores_gemma":[0.0049339803,0.0001315018,0.8249674,0.00015253683,0.00049877603,0.0000044007525,0.0037361186,0.0025851347,0.16180626,0.00001781394,0.0009922788,0.00017379489],"about_ca_topic_score_codex":0.003620102,"about_ca_topic_score_gemma":0.021417262,"teacher_disagreement_score":0.588047,"about_ca_system_score_codex":0.000024735295,"about_ca_system_score_gemma":0.00045136886,"threshold_uncertainty_score":0.99643934},"labels":[],"label_agreement":null},{"id":"W2049681542","doi":"10.1371/journal.pone.0084313","title":"Biochemical Phenotypes to Discriminate Microbial Subpopulations and Improve Outbreak Detection","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Outbreak; Microbiology; Veterinary medicine; Medicine; Virology","score_opus":0.02314851591156314,"score_gpt":0.2232965070183671,"score_spread":0.20014799110680395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049681542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987972,0.000021420823,0.00031109812,0.0004043539,0.00005130912,0.00026846142,0.000011876711,0.000020757421,0.00011354587],"genre_scores_gemma":[0.9964123,0.000004646841,0.0026402755,0.00013119228,0.00017025514,0.000039857914,0.00007080358,0.000011253888,0.0005194386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943054,0.000020632446,0.0001316108,0.0002471786,0.000051545645,0.00011848249],"domain_scores_gemma":[0.9995984,0.000005924673,0.000031585772,0.00018200908,0.00010139991,0.000080686914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000050690596,0.00007524458,0.00007799865,0.00002456965,0.00006961596,0.00006178162,0.00005744737,0.0000724655,0.000035555],"category_scores_gemma":[0.00020789861,0.00007691863,0.000020683785,0.00004393081,0.000029544066,0.0000060321404,0.000073369774,0.000041698488,0.00005271501],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000120967825,0.00013141909,0.0015915077,0.00001931985,0.000019073816,3.349619e-8,0.00004276707,1.535335e-7,0.9963232,0.000008214062,0.00008964023,0.0017625467],"study_design_scores_gemma":[0.00012274281,0.00006659223,0.034795325,0.00001053169,0.000024858631,7.461231e-7,0.000028531582,0.000076353674,0.9646154,0.00007179921,0.000082405546,0.000104724844],"about_ca_topic_score_codex":0.00015021105,"about_ca_topic_score_gemma":0.00009294702,"teacher_disagreement_score":0.033203818,"about_ca_system_score_codex":0.000009190404,"about_ca_system_score_gemma":0.000008071084,"threshold_uncertainty_score":0.3136651},"labels":[],"label_agreement":null},{"id":"W2051283391","doi":"10.1016/j.jinf.2010.06.001","title":"Time to blood culture positivity in Staphylococcus aureus bacteremia: Association with 30-day mortality","year":2010,"lang":"en","type":"article","venue":"Journal of Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Bacteremia; Medicine; Staphylococcus aureus; Case fatality rate; Internal medicine; Blood culture; Mortality rate; Retrospective cohort study; Logistic regression; Population; Antimicrobial; Surgery; Epidemiology; Antibiotics; Microbiology; Bacteria; Biology","score_opus":0.00515961830550852,"score_gpt":0.24257908718611845,"score_spread":0.23741946888060994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051283391","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990044,0.000005414207,0.00018690646,0.00011880346,0.00023399224,0.00009929388,0.0000053414774,0.000005841202,0.00033997747],"genre_scores_gemma":[0.9991345,0.0000050566046,0.00013520077,0.00006810701,0.00038670815,0.00000223168,0.000013858542,0.0000067494,0.0002475808],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999276,0.00010732697,0.00025419393,0.00012570075,0.0001313737,0.0001053998],"domain_scores_gemma":[0.99914384,0.0000137538245,0.00030007627,0.00012735036,0.00034793586,0.00006704557],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091264135,0.000079377365,0.00011935057,0.00005791988,0.000041989846,0.00004972407,0.00005132304,0.00017114215,0.00008478164],"category_scores_gemma":[0.0005933979,0.00006623396,0.00005692449,0.000114391834,0.000012075177,0.000017772365,0.000017566796,0.0002727315,0.000014447489],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013649765,0.00009366065,0.310812,0.0000037621867,0.000029328101,0.0000014445042,0.000047388403,0.000021808673,0.6883734,9.4910916e-7,0.00028192077,0.00032071033],"study_design_scores_gemma":[0.0003480753,0.0002694658,0.8343309,0.0000149827465,0.000030133986,0.000007693675,0.000005812682,0.00000882427,0.16318348,0.000008440111,0.0017137964,0.00007836117],"about_ca_topic_score_codex":0.000036022626,"about_ca_topic_score_gemma":0.0005780486,"teacher_disagreement_score":0.5251899,"about_ca_system_score_codex":0.000045867095,"about_ca_system_score_gemma":0.00006233359,"threshold_uncertainty_score":0.27009425},"labels":[],"label_agreement":null},{"id":"W2051813486","doi":"10.1007/s00134-006-0352-x","title":"Role of routine blood cultures in detecting unapparent infections during continuous renal replacement therapy","year":2006,"lang":"en","type":"article","venue":"Intensive Care Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire de Sherbrooke","funders":"Centers for Disease Control and Prevention","keywords":"Medicine; Renal replacement therapy; Sepsis; Retrospective cohort study; Fungemia; Bacteremia; Occult; Blood culture; Intensive care; Anesthesiology; Intensive care medicine; Cohort study; Blood transfusion; Internal medicine; Surgery; Anesthesia; Pathology","score_opus":0.008207138958157249,"score_gpt":0.2627112518707199,"score_spread":0.2545041129125627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051813486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99734414,0.0016521822,0.000034182685,0.0001619186,0.00014243014,0.00020966581,0.0000059846448,0.000015964188,0.0004335478],"genre_scores_gemma":[0.99920166,0.000057305748,0.000043303004,0.00011638608,0.000296701,0.000018589915,0.00013202972,0.000010776594,0.00012325105],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905235,0.000057488327,0.00038111888,0.0002635799,0.000100523255,0.0001449484],"domain_scores_gemma":[0.9983759,0.00001788654,0.00015289655,0.00022778421,0.0011951906,0.00003035809],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013081905,0.00011633801,0.00019213934,0.00006907356,0.00005327338,0.000007300286,0.00007273085,0.00007131705,0.000026771771],"category_scores_gemma":[0.00094037154,0.0000970503,0.000049483453,0.00011234456,0.00008382448,0.0000027200824,0.000041492487,0.00009049808,6.856775e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000088654226,0.000037486672,0.08081527,0.000015260359,0.000021127418,0.0000019164988,0.00073432614,0.000029500317,0.9176515,0.000008730547,0.000098013625,0.0004982181],"study_design_scores_gemma":[0.0019211542,0.00049671275,0.1322865,0.00013820748,0.000020072379,0.000027212085,0.011058104,0.000008038873,0.85305995,0.0000247365,0.0008492593,0.00011003518],"about_ca_topic_score_codex":0.0012878178,"about_ca_topic_score_gemma":0.0010369737,"teacher_disagreement_score":0.064591534,"about_ca_system_score_codex":0.000024016865,"about_ca_system_score_gemma":0.00002206641,"threshold_uncertainty_score":0.39575964},"labels":[],"label_agreement":null},{"id":"W2051947381","doi":"10.1016/j.meegid.2012.01.011","title":"Molecular methods for pathogen and microbial community detection and characterization: Current and potential application in diagnostic microbiology","year":2012,"lang":"en","type":"review","venue":"Infection Genetics and Evolution","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":157,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Biology; Clinical microbiology; Computational biology; Molecular diagnostics; DNA microarray; Polymerase chain reaction; Restriction fragment length polymorphism; Virulence; DNA sequencing; Typing; Human pathogen; Identification (biology); Microbiology; Genetics; Gene; Ecology","score_opus":0.02798176449223353,"score_gpt":0.33040952995212125,"score_spread":0.3024277654598877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051947381","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2810637,0.6060587,0.11154938,0.000007041326,0.00033033718,0.00089830894,0.00008069841,0.000010890705,9.3135225e-7],"genre_scores_gemma":[0.17916358,0.81830937,0.000792677,0.000008920068,0.00019712759,0.0001921517,0.0013088781,0.000024269224,0.0000030400668],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984671,0.00056997454,0.0004054338,0.00037067704,0.000021891245,0.0001649465],"domain_scores_gemma":[0.9993328,0.0000808999,0.0002462878,0.0001849833,0.00008530785,0.00006971912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006720673,0.00022030238,0.00033194103,0.000119416756,0.00020885507,0.00006184745,0.00003923017,0.0003667954,5.745961e-7],"category_scores_gemma":[0.00018876848,0.00023683884,0.00005309809,0.00008607297,0.00010501376,0.000010073822,0.00012962184,0.00018273009,4.069356e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000062486138,0.000030106838,0.0005839116,0.0010554456,0.000012950487,2.0837323e-8,0.000017749793,5.456008e-7,0.42337185,0.0000099654735,4.4191438e-7,0.57491076],"study_design_scores_gemma":[0.0012101003,0.00048744224,0.07241466,0.0007803912,0.0011225514,0.00043935183,0.000021447695,0.0009882273,0.0039389604,0.0003290237,0.91717964,0.0010882146],"about_ca_topic_score_codex":0.00005169111,"about_ca_topic_score_gemma":0.00010454574,"teacher_disagreement_score":0.91717917,"about_ca_system_score_codex":0.00003760619,"about_ca_system_score_gemma":0.0000313802,"threshold_uncertainty_score":0.96580076},"labels":[],"label_agreement":null},{"id":"W2052248979","doi":"10.1016/j.diagmicrobio.2014.09.018","title":"Comparison of the Vitek MS and Bruker Microflex LT MALDI-TOF MS platforms for routine identification of commonly isolated bacteria and yeast in the clinical microbiology laboratory","year":2014,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Clinical microbiology; Mass spectrometry; Yeast; Microbiology; Medicine; Biology; Chromatography; Chemistry; Genetics","score_opus":0.012823365241055736,"score_gpt":0.2903488445033398,"score_spread":0.27752547926228405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052248979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99787325,0.00060845877,0.00023360885,0.00016354307,0.00021947602,0.00048278645,0.00040718852,0.000005712382,0.000006008807],"genre_scores_gemma":[0.99897724,0.00012794115,0.000027846132,0.00030788782,0.000053213564,0.000025331821,0.00046128267,0.000009212923,0.000010037158],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986159,0.0003097991,0.0005919025,0.00031839937,0.000014614968,0.00014938065],"domain_scores_gemma":[0.99873567,0.0004691373,0.00032454616,0.00029710273,0.00012270853,0.00005081874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007654523,0.00013611122,0.0002731113,0.000036847116,0.000109145505,0.000020647523,0.00013355934,0.00019650378,0.000006094715],"category_scores_gemma":[0.0016884856,0.00009530448,0.000058528756,0.00007576124,0.0005925346,0.000008531566,0.000099206656,0.000109452456,6.933039e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011184782,0.00014211814,0.40438232,0.00005553908,0.000020104264,6.799386e-8,0.00008717942,0.0000010285884,0.5945863,0.00011023716,0.00024178207,0.00026146506],"study_design_scores_gemma":[0.0012969932,0.0003212545,0.95625204,0.00003894226,0.000086119144,0.000017481058,0.00006867177,0.00009242627,0.039194554,0.00015617363,0.002328012,0.00014733519],"about_ca_topic_score_codex":0.00002539214,"about_ca_topic_score_gemma":0.00019747321,"teacher_disagreement_score":0.5553917,"about_ca_system_score_codex":0.000004895026,"about_ca_system_score_gemma":0.000042761734,"threshold_uncertainty_score":0.3886404},"labels":[],"label_agreement":null},{"id":"W2056258709","doi":"10.1016/s0732-8893(00)00156-5","title":"Intra and inter technologist variability in the quality assessment of respiratory tract specimens","year":2000,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Respiratory tract; Scoring system; Respiratory system; External quality assessment; Medicine; Pathology; Enumeration; Internal medicine; Mathematics; Combinatorics","score_opus":0.01426672889766186,"score_gpt":0.29216785892445457,"score_spread":0.27790113002679273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056258709","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99865484,0.00017586483,0.00009382405,0.00023274585,0.000047756665,0.00025284934,0.00006597737,0.000010438624,0.00046570285],"genre_scores_gemma":[0.9992144,0.00013518594,0.000029206534,0.0004687682,0.00003238016,0.000029836629,0.00007381261,0.00000408278,0.000012287138],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99874365,0.00052198634,0.00028698798,0.00030406166,0.00002048437,0.00012281774],"domain_scores_gemma":[0.99916184,0.00039555583,0.00006778646,0.0002987751,0.00003415061,0.000041920164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010186894,0.000101148275,0.0001374491,0.000030050025,0.00006455795,0.000017215156,0.00009036297,0.00011850258,0.000112976704],"category_scores_gemma":[0.0017823619,0.000079127305,0.00003445742,0.00006142335,0.000404998,0.000005202605,0.000042102038,0.000121740355,0.000001487202],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031443094,0.00039600788,0.7749755,0.00003791446,0.000012008698,0.0000020711605,0.000044029148,0.000002119833,0.21965772,0.0007143685,0.0001047974,0.004022048],"study_design_scores_gemma":[0.00039500825,0.00013649568,0.9949709,0.000012579821,0.000018035369,0.000009890195,0.00004036037,0.0000053657,0.0013664529,0.0007185712,0.0022261713,0.000100140925],"about_ca_topic_score_codex":0.00003925729,"about_ca_topic_score_gemma":0.00009038274,"teacher_disagreement_score":0.21999545,"about_ca_system_score_codex":0.000010646176,"about_ca_system_score_gemma":0.00004469951,"threshold_uncertainty_score":0.32267177},"labels":[],"label_agreement":null},{"id":"W2058794069","doi":"10.1021/ac048152q","title":"Integrated Sample Processing System Involving On-Column Protein Adsorption, Sample Washing, and Enzyme Digestion for Protein Identification by LC−ESI MS/MS","year":2005,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chemistry; Chromatography; Mass spectrometry; Elution; Sample preparation in mass spectrometry; Electrospray ionization; Digestion (alchemy); Sample preparation; Proteomics; Bottom-up proteomics; Electrospray; Adsorption; Protein purification; Protein mass spectrometry; Biochemistry","score_opus":0.015895131483360192,"score_gpt":0.2555341939044049,"score_spread":0.2396390624210447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058794069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9726424,0.00014256062,0.025649622,0.00036848028,0.00002533632,0.0007166416,0.00016182277,0.00009193476,0.00020119938],"genre_scores_gemma":[0.9932078,0.0000044490166,0.0027327295,0.000054310047,0.0003321099,0.0002470518,0.0018144463,0.000034096272,0.0015729936],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982449,0.00005238045,0.0005347189,0.00068831595,0.00018185608,0.00029783926],"domain_scores_gemma":[0.99887407,0.000051612395,0.00022617134,0.00036580474,0.00032757153,0.0001547851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005028995,0.00022818509,0.00021025888,0.000029175104,0.00022529806,0.00029479625,0.00018610343,0.00027580137,0.000032283002],"category_scores_gemma":[0.0022922382,0.00023601372,0.000080292564,0.00014537189,0.00010284578,0.000031104915,0.000052768155,0.00016254881,0.000005593267],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006703922,0.00010300868,0.00035593836,0.00039252292,0.000020422453,1.0542959e-7,0.000030457319,0.00000973278,0.99585277,0.00018325017,0.00084646174,0.0021382773],"study_design_scores_gemma":[0.00048647722,0.000065427856,0.00035650813,0.0002410191,0.000039923052,0.00000395116,0.00016822954,0.021061286,0.9656359,0.00012927166,0.011477596,0.00033444344],"about_ca_topic_score_codex":0.00012324084,"about_ca_topic_score_gemma":0.000045082732,"teacher_disagreement_score":0.030216917,"about_ca_system_score_codex":0.00012610384,"about_ca_system_score_gemma":0.000098361925,"threshold_uncertainty_score":0.96243596},"labels":[],"label_agreement":null},{"id":"W2059989319","doi":"10.1016/s0165-2370(03)00095-0","title":"Py-MAB-Tof detection and Identification of microorganisms in urine","year":2004,"lang":"en","type":"article","venue":"Journal of Analytical and Applied Pyrolysis","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Mass spectrometry; Chemistry; Citrobacter freundii; Ionization; Chromatography; Electron ionization; Proteus mirabilis; Fragmentation (computing); Analytical Chemistry (journal); Ion; Escherichia coli; Enterobacteriaceae; Biology; Organic chemistry","score_opus":0.006835183462210703,"score_gpt":0.22973567216167848,"score_spread":0.22290048869946777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059989319","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99720883,0.00010206502,0.0023456232,0.00020051739,0.000023350285,0.000039705457,0.0000017586752,0.0000012739055,0.000076846205],"genre_scores_gemma":[0.99945974,0.000100818805,0.00031780388,0.00003095521,0.000043942553,6.9291025e-7,0.0000028510558,0.0000031632867,0.000040015697],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993118,0.000014246857,0.0004216612,0.00012011017,0.000067981324,0.0000641665],"domain_scores_gemma":[0.9995997,0.000011802203,0.00018252738,0.00008519127,0.00007712242,0.000043649045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003005725,0.000059071066,0.00015588968,0.000094833296,0.00002504913,0.000022066723,0.000050094717,0.00006710803,0.00000600227],"category_scores_gemma":[0.000095362935,0.000052253323,0.000042416174,0.00013194702,0.000061490624,0.0000053330677,0.000026916185,0.00006453303,3.41328e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000076033,0.00006635253,0.0014414242,0.000022281507,0.000027826169,4.174004e-7,0.000033869244,0.000054562643,0.99449384,0.00031689857,0.0000032209132,0.003463283],"study_design_scores_gemma":[0.0008146719,0.0000919404,0.09206339,0.000018364743,0.00007155507,0.00001640204,0.00014488043,0.000088191046,0.90506285,0.0014685782,0.00008783884,0.000071359405],"about_ca_topic_score_codex":0.000010866753,"about_ca_topic_score_gemma":0.000027177673,"teacher_disagreement_score":0.09062196,"about_ca_system_score_codex":0.000010365813,"about_ca_system_score_gemma":0.000023566385,"threshold_uncertainty_score":0.21308286},"labels":[],"label_agreement":null},{"id":"W2061582607","doi":"10.1086/671731","title":"Can Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF) Enhance Antimicrobial Stewardship Efforts in the Acute Care Setting?","year":2013,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Jubilee Hospital","funders":"","keywords":"Mass spectrometry; Stewardship (theology); Antimicrobial stewardship; Matrix-assisted laser desorption/ionization; Desorption; Medicine; Time-of-flight mass spectrometry; Antimicrobial; Ionization; Antibiotics; Chromatography; Chemistry; Antibiotic resistance; Ion","score_opus":0.006282856734074722,"score_gpt":0.259399913737082,"score_spread":0.25311705700300724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061582607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99293274,0.00017396745,0.003935233,0.0020031743,0.00028932336,0.000544043,0.00003026425,0.000021558937,0.00006972124],"genre_scores_gemma":[0.9980547,0.00009490702,0.0006625194,0.0005361998,0.00020523717,0.00005753058,0.00029918898,0.000012498775,0.00007721863],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982368,0.0005656809,0.0005163417,0.00037465413,0.000057156296,0.00024939197],"domain_scores_gemma":[0.9990321,0.0001712714,0.00030734684,0.0002427663,0.00019732618,0.000049197293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007143543,0.00016253954,0.00029721312,0.00008850039,0.00011178015,0.0000337233,0.00009825186,0.00024305542,0.000035710364],"category_scores_gemma":[0.00078485656,0.00013181964,0.00009414867,0.00016204802,0.00011098818,0.000019411558,0.000028631053,0.00013897644,0.00001419104],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005115293,0.00006984529,0.26037145,0.000045722954,0.000053930034,9.0214684e-7,0.0001832263,0.00009840195,0.7358577,0.000081408674,0.00052636967,0.0026598615],"study_design_scores_gemma":[0.0009744694,0.00052216026,0.97428954,0.000028150327,0.000062537765,0.00002658819,0.0000795533,0.00072735036,0.022336552,0.00034373804,0.00036355527,0.0002458352],"about_ca_topic_score_codex":0.00054715027,"about_ca_topic_score_gemma":0.00018395994,"teacher_disagreement_score":0.7139181,"about_ca_system_score_codex":0.00003193783,"about_ca_system_score_gemma":0.000035577243,"threshold_uncertainty_score":0.5375449},"labels":[],"label_agreement":null},{"id":"W2061729780","doi":"10.1016/j.chroma.2014.08.042","title":"Development of an immunoaffinity solid phase microextraction method for the identification of penicillin binding protein 2a","year":2014,"lang":"en","type":"article","venue":"Journal of Chromatography A","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Chemistry; Chromatography; Antigen; Sorbent; Monoclonal antibody; Antibody; Protein A; Staphylococcus aureus; Penicillin; Bovine serum albumin; Affinity chromatography; Protein G; Solid-phase microextraction; Antibiotics; Bacteria; Biochemistry; Enzyme; Immunology; Biology; Mass spectrometry","score_opus":0.02317455682115024,"score_gpt":0.3498481805347364,"score_spread":0.32667362371358616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061729780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8394683,0.00005648819,0.16010517,0.000029999885,0.00011970531,0.00020450375,0.000007805171,0.0000023903472,0.0000056433328],"genre_scores_gemma":[0.9395218,0.0000096151325,0.060330614,0.000005744464,0.0000775617,0.000010486738,0.000025457097,0.000008454953,0.0000102526765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986093,0.00013749677,0.0009224977,0.000115575014,0.0001279487,0.0000871943],"domain_scores_gemma":[0.9978851,0.000054185286,0.0013668594,0.00022638764,0.00043346747,0.00003398765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025553312,0.00007902553,0.0001738918,0.000109179404,0.00010654362,0.000027971166,0.00021070178,0.00007006863,0.0000056143867],"category_scores_gemma":[0.00035624878,0.000061584105,0.0001812661,0.00012486751,0.000046390964,0.00001726926,0.000017457116,0.000065495085,2.4523618e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016884251,0.0002466865,0.00006183531,0.00006150918,0.0000868032,4.0710518e-8,0.00018826098,0.000010698827,0.98236656,0.000026993841,0.000016851709,0.016764943],"study_design_scores_gemma":[0.0007500117,0.00024299232,0.0022333765,0.000038326914,0.00004448715,0.000013238531,0.00024125431,0.00042317456,0.99427235,0.00005841748,0.0016192048,0.00006319039],"about_ca_topic_score_codex":0.00000466915,"about_ca_topic_score_gemma":0.000011191759,"teacher_disagreement_score":0.10005352,"about_ca_system_score_codex":0.000007775448,"about_ca_system_score_gemma":0.00008879525,"threshold_uncertainty_score":0.2511327},"labels":[],"label_agreement":null},{"id":"W2064305164","doi":"10.1002/cjce.20095","title":"A new method for the detection of microorganisms in blood cultures: Part I. Theoretical analysis and simulation of blood culture processes","year":2008,"lang":"en","type":"article","venue":"The Canadian Journal of Chemical Engineering","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Microorganism; Biochemical engineering; Reflectivity; Human blood; Blood culture; Biological system; Computer science; Chemistry; Process engineering; Bacteria; Microbiology; Biology; Physiology; Optics; Engineering; Physics","score_opus":0.007531121037350566,"score_gpt":0.23791558064394194,"score_spread":0.23038445960659137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064305164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95068145,0.0006963337,0.04841922,0.00009444216,0.000025032383,0.00007416321,0.00000608426,0.0000010808232,0.000002193251],"genre_scores_gemma":[0.99642944,0.000019778261,0.0034380148,0.0000107805345,0.00008521839,0.0000011599963,0.0000035966007,0.000004961124,0.000007074806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995582,0.00001640079,0.00023336035,0.00006612194,0.00004936031,0.00007655496],"domain_scores_gemma":[0.99950165,0.000083791,0.00010351146,0.000082402905,0.00015995889,0.00006869645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022841638,0.00005555798,0.00012227087,0.000043985292,0.000031259126,0.000009905897,0.000101305224,0.00006884538,0.00000408586],"category_scores_gemma":[0.0009800957,0.000035672037,0.000063032814,0.00019644506,0.000055348188,0.000004154587,0.0000068161767,0.00007701079,1.2515707e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014965132,0.0000065093122,0.00033034352,0.000026836733,0.0001393512,3.4443292e-7,0.00037762453,0.007768851,0.9911266,0.000033430406,0.0000033263539,0.00017182376],"study_design_scores_gemma":[0.00025093812,0.000039788272,0.0005416567,0.00001764926,0.0003081275,0.00003416026,0.000028794018,0.0031057892,0.9954758,0.00006896279,0.000085443484,0.000042834126],"about_ca_topic_score_codex":0.00024136862,"about_ca_topic_score_gemma":0.00053847436,"teacher_disagreement_score":0.045747966,"about_ca_system_score_codex":0.0000061315122,"about_ca_system_score_gemma":0.00013468479,"threshold_uncertainty_score":0.14546634},"labels":[],"label_agreement":null},{"id":"W2065385849","doi":"10.1186/s13104-015-1051-x","title":"Validity of calendar day-based definitions for community-onset bloodstream infections","year":2015,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Royal Inland Hospital","funders":"","keywords":"Medicine; Gold standard (test); Bloodstream infection; Pediatrics; Cohort; Population; Blood culture; Emergency medicine; Internal medicine","score_opus":0.49929143600852016,"score_gpt":0.4522626691458754,"score_spread":0.04702876686264479,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065385849","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98688936,0.000023889455,0.01145832,0.00015109377,0.000089522524,0.0003208521,0.00085108017,0.000018762381,0.00019710347],"genre_scores_gemma":[0.99404615,0.0000069039666,0.004765409,0.00002036406,0.000096668744,0.00009946271,0.0008808694,0.000012424799,0.00007175557],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981165,0.0011253491,0.00020743713,0.0001675987,0.00017270706,0.00021040853],"domain_scores_gemma":[0.99718004,0.001172172,0.00005334362,0.0005436267,0.00092543877,0.00012538613],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0032345904,0.00007369001,0.00010626556,0.000093601666,0.00032526336,0.000028597231,0.00020378127,0.00009898512,0.000015163241],"category_scores_gemma":[0.017307963,0.00007562705,0.00008456132,0.00018050901,0.00025707198,0.0000049287887,0.00010241272,0.00018079224,0.000009864964],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012327902,0.0015574257,0.2990783,0.00023342024,0.00003179581,2.65879e-7,0.00023887311,0.00013159956,0.6884999,0.00037317962,0.009194371,0.00053755747],"study_design_scores_gemma":[0.0021837046,0.0021404724,0.073024236,0.00006575104,0.000039567207,0.0000061956644,0.0010732556,0.00068866275,0.8998404,0.0057743504,0.014838947,0.00032442674],"about_ca_topic_score_codex":0.0007100048,"about_ca_topic_score_gemma":0.0021811584,"teacher_disagreement_score":0.22605406,"about_ca_system_score_codex":0.000020462428,"about_ca_system_score_gemma":0.0005038752,"threshold_uncertainty_score":0.99096966},"labels":[],"label_agreement":null},{"id":"W2065881381","doi":"10.1016/j.anaerobe.2011.10.004","title":"Susceptibility profiles and resistance genes for carbapenems (cfiA) and metronidazole (nim) among Bacteroides species in a Turkish University Hospital","year":2011,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Food Inspection Agency","keywords":"Imipenem; Microbiology; Meropenem; Bacteroides fragilis; Biology; Metronidazole; Bacteroides; Antibiotics; Antibiotic resistance; Genetics; Bacteria","score_opus":0.01870715618408508,"score_gpt":0.20712110273485523,"score_spread":0.18841394655077015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065881381","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99872535,0.00032556502,0.00007254593,0.00004853543,0.00006371356,0.00029211212,0.000031828138,0.00001293864,0.00042738463],"genre_scores_gemma":[0.9964119,0.00017540375,0.0023576235,0.0000142195495,0.00004672557,0.000006402861,0.000051585394,0.000009623598,0.0009265242],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99918115,0.000050674815,0.00014820481,0.0004041081,0.00004278962,0.00017309614],"domain_scores_gemma":[0.99955535,0.000018502262,0.00006788524,0.00022203576,0.00007488454,0.00006135498],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020857016,0.000111893496,0.00013453509,0.000037490063,0.00009000072,0.000034638517,0.00010072448,0.00009293223,0.00001432239],"category_scores_gemma":[0.000114924514,0.00012118004,0.00003694541,0.00006471442,0.00019983067,0.000019310737,0.00008939114,0.000046278892,4.515049e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086348264,0.00005662529,0.7105472,0.00004646048,0.000015821395,0.0000013822148,0.00035048643,1.2378014e-7,0.28796536,0.0003100373,0.000134734,0.0004854197],"study_design_scores_gemma":[0.00036951466,0.00010996802,0.94901985,0.000012982906,0.000011850618,4.783389e-7,0.00096037047,0.000008804272,0.04714986,0.00013080901,0.0020684,0.00015710079],"about_ca_topic_score_codex":0.0003516346,"about_ca_topic_score_gemma":0.0118648615,"teacher_disagreement_score":0.2408155,"about_ca_system_score_codex":0.000018904711,"about_ca_system_score_gemma":0.000025065428,"threshold_uncertainty_score":0.6620871},"labels":[],"label_agreement":null},{"id":"W2069668456","doi":"10.1128/jcm.40.8.2786-2790.2002","title":"Rapid Detection of Methicillin-Resistant Staphylococci from Blood Culture Bottles by Using a Multiplex PCR Assay","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":193,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"Microbiology; Multiplex; Multiplex polymerase chain reaction; Blood culture; Micrococcaceae; Biology; Polymerase chain reaction; Virology; Medicine; Antibacterial agent; Antibiotics; Gene; Genetics","score_opus":0.06642313127949792,"score_gpt":0.3285745298473268,"score_spread":0.2621513985678289,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069668456","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952016,0.002415776,0.0013837904,0.00009965885,0.000610823,0.00011404027,0.00014323517,0.0000045609427,0.000026549915],"genre_scores_gemma":[0.99493784,0.00060873525,0.0036348216,0.00017790229,0.0004916513,9.727055e-7,0.00004894102,0.000013639506,0.00008552823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971506,0.00081680197,0.0015254323,0.0002799998,0.000057343197,0.00016982779],"domain_scores_gemma":[0.9976523,0.000274229,0.0012786363,0.00025563262,0.00044236184,0.00009686837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014022845,0.00014668387,0.0005144284,0.00004478121,0.000057674384,0.000018051227,0.00023941378,0.0005303238,0.00012889522],"category_scores_gemma":[0.0026852058,0.000118836535,0.00037583313,0.000077322526,0.00020847852,0.000007625859,0.00005955891,0.0003730714,0.0000035263397],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022513873,0.00032626648,0.0022211974,0.000010684978,0.00022599388,0.0000017146718,0.00004404157,0.0000059524095,0.991892,0.0000011667504,0.00070861995,0.004337264],"study_design_scores_gemma":[0.0019435493,0.0010628318,0.003171805,0.000046184276,0.00017793714,0.000027742317,0.00009522065,0.00014852443,0.94816226,0.00004001637,0.044934776,0.00018916618],"about_ca_topic_score_codex":0.000039358456,"about_ca_topic_score_gemma":0.00005620508,"teacher_disagreement_score":0.044226155,"about_ca_system_score_codex":0.000010108645,"about_ca_system_score_gemma":0.000043426444,"threshold_uncertainty_score":0.48460132},"labels":[],"label_agreement":null},{"id":"W2072388098","doi":"10.1111/myc.12205","title":"Comparative analysis of Gram's stain, <scp>PNA</scp>‐<scp>FISH</scp> and Sepsityper with <scp>MALDI</scp>‐<scp>TOF MS</scp> for the identification of yeast direct from positive blood cultures","year":2014,"lang":"en","type":"article","venue":"Mycoses","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Health Services and Delivery Research Programme; National Institutes of Health; Astellas Pharma","keywords":"Yeast; Gram staining; Matrix-assisted laser desorption/ionization; Microbiology; Chemistry; Blood culture; Mass spectrometry; Chromatography; Biology; Biochemistry; Desorption","score_opus":0.012765182629124688,"score_gpt":0.26032451719822464,"score_spread":0.24755933456909995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072388098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935871,0.0007128415,0.002019904,0.00004291103,0.00013124211,0.00075033185,0.0012321654,0.000042739724,0.0014807811],"genre_scores_gemma":[0.9946861,0.00015171844,0.00094089535,0.00017369307,0.00019199771,0.0000907772,0.0017612875,0.00003974329,0.0019637456],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971219,0.00038716226,0.00079676544,0.0009028211,0.0003634619,0.00042792884],"domain_scores_gemma":[0.99519235,0.0019605623,0.0009260349,0.000852101,0.00091302645,0.00015594454],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00073720666,0.0004274822,0.0007930139,0.00016663062,0.00033698126,0.00021367411,0.0004796634,0.00027962515,0.000007051674],"category_scores_gemma":[0.004132801,0.00033552185,0.00031418374,0.000599921,0.00046837627,0.000048111826,0.00018925201,0.00017634605,0.000006286781],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001787779,0.0003980113,0.03432606,0.000083936466,0.0023686632,9.072194e-7,0.004685049,0.00028182854,0.9498625,0.00015017607,0.00759758,0.00022740413],"study_design_scores_gemma":[0.00079737883,0.0003292165,0.30693364,0.00004403898,0.0020498263,0.000004088798,0.005601374,0.00087197195,0.67248464,0.00015170868,0.010670559,0.000061578794],"about_ca_topic_score_codex":0.00054599665,"about_ca_topic_score_gemma":0.0010816661,"teacher_disagreement_score":0.27737787,"about_ca_system_score_codex":0.000024449313,"about_ca_system_score_gemma":0.00007642886,"threshold_uncertainty_score":0.9999097},"labels":[],"label_agreement":null},{"id":"W2073280413","doi":"10.1139/w05-160","title":"Molecular characterization of microbial communities in Canadian pulp and paper activated sludge and quantification of a novel<i>Thiothrix eikelboomii</i>-like bulking filament","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Activated sludge; Paper mill; Pulp (tooth); Biology; Wastewater; Pulp and paper industry; 16S ribosomal RNA; Strain (injury); Microbial population biology; Sewage treatment; Sequencing batch reactor; Microbiology; Food science; Bacteria; Gene; Environmental science; Environmental engineering; Biochemistry; Genetics","score_opus":0.0116068433513895,"score_gpt":0.21382789618246392,"score_spread":0.20222105283107442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073280413","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99891484,0.0002755836,0.00011739553,0.00025787944,0.00013303696,0.00011085296,0.0001671382,8.5087004e-7,0.000022429715],"genre_scores_gemma":[0.99910456,0.000039511266,0.00022590482,0.0001473304,0.000028298091,0.0000011711571,0.00042505693,0.000010150739,0.000018045912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908316,0.00010876927,0.00047174402,0.00011898263,0.000019740808,0.00019762269],"domain_scores_gemma":[0.99920744,0.000016182077,0.00031643276,0.00014320102,0.00019578339,0.000120953635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034334176,0.00009895487,0.00020685034,0.00024832514,0.000054297,0.000020860234,0.00011527721,0.00015961891,0.00001778121],"category_scores_gemma":[0.000059980357,0.00010775283,0.000033688644,0.00008262691,0.00020047849,0.000012553836,0.000016144337,0.00009823051,1.3107228e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024802292,0.000019404788,0.014004487,0.000027067763,0.00001710883,0.0000019829522,0.0002091836,0.000013224017,0.98532975,0.00009030015,0.000035828103,0.00022683633],"study_design_scores_gemma":[0.0007659457,0.00012544605,0.08356743,0.00009894821,0.000018680124,0.00014266158,0.00022200761,0.000017326103,0.9048554,0.000012218008,0.010023212,0.00015073668],"about_ca_topic_score_codex":0.17461766,"about_ca_topic_score_gemma":0.6734789,"teacher_disagreement_score":0.49886122,"about_ca_system_score_codex":0.000053802196,"about_ca_system_score_gemma":0.00053639774,"threshold_uncertainty_score":0.8308786},"labels":[],"label_agreement":null},{"id":"W2073342698","doi":"10.1111/j.1574-6941.2010.00837.x","title":"Advanced imaging techniques for assessment of structure, composition and function in biofilm systems","year":2010,"lang":"en","type":"review","venue":"FEMS Microbiology Ecology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":229,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Environment and Climate Change Canada","funders":"Basic Energy Sciences; Natural Sciences and Engineering Research Council of Canada; Deutscher Akademischer Austauschdienst; Helmholtz-Zentrum für Umweltforschung; Advanced Foods and Materials Network; U.S. Department of Energy; University of Saskatchewan; Canadian Light Source; National Science Foundation","keywords":"Biology; Biofilm; Microscopy; Nanotechnology; Materials science; Optics; Physics; Bacteria","score_opus":0.016836552731916053,"score_gpt":0.3186350825971459,"score_spread":0.30179852986522987,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073342698","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06552176,0.9266809,0.0010756366,0.000026727874,0.002443685,0.0032023727,0.00094974734,0.000040520405,0.000058625883],"genre_scores_gemma":[0.093126506,0.8838355,0.0072069536,0.00008286574,0.00039449218,0.0006191712,0.014550874,0.000083755775,0.000099889265],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983569,0.0002387233,0.00064001966,0.0005323293,0.000014373893,0.00021766937],"domain_scores_gemma":[0.99896663,0.000083946696,0.00052395824,0.0002808559,0.00011690242,0.000027687955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033657494,0.00024071147,0.00082103774,0.00017529527,0.000054846805,0.000015524316,0.00014669131,0.00076593226,0.000007788857],"category_scores_gemma":[0.00006429829,0.00022775949,0.00011147108,0.00006841715,0.00016393438,0.0000043212704,0.00009395589,0.00023824406,4.816986e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016559032,0.000037325415,0.0006401351,0.0014607575,0.000035094352,3.1531624e-7,0.0000028859472,4.9235774e-7,0.84810746,0.00009920357,0.00007148489,0.1495283],"study_design_scores_gemma":[0.0005036801,0.00035612355,0.0010943365,0.0006260095,0.00018305743,0.00019129676,0.000017322396,0.000019916728,0.005047669,0.00003952471,0.99152684,0.00039424957],"about_ca_topic_score_codex":0.00001205193,"about_ca_topic_score_gemma":0.0001383436,"teacher_disagreement_score":0.9914553,"about_ca_system_score_codex":0.000042243522,"about_ca_system_score_gemma":0.00015470207,"threshold_uncertainty_score":0.9287762},"labels":[],"label_agreement":null},{"id":"W2074361512","doi":"10.1186/1471-2334-12-85","title":"The distinct category of healthcare associated bloodstream infections","year":2012,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Petro-Canada; Calgary Laboratory Services; University of Calgary; Alberta Health Services","funders":"","keywords":"Medical microbiology; Parasitology; Tropical medicine; Bloodstream infection; Medicine; Health care; Microbiology; Intensive care medicine; Biology; Immunology; Pathology","score_opus":0.0155423711316576,"score_gpt":0.2743445694800524,"score_spread":0.2588021983483948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074361512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99784493,0.00071534293,0.00011647811,0.000039690683,0.00046263795,0.00016362753,0.00006610376,0.00005014268,0.00054105965],"genre_scores_gemma":[0.99920195,0.000039720948,0.000006780082,0.000032465618,0.00024723093,0.000041179817,0.0002059362,0.000013362214,0.00021139305],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99914104,0.00018901772,0.00022152586,0.00014375996,0.000082175655,0.00022250124],"domain_scores_gemma":[0.9991706,0.000093967516,0.00015066288,0.0003054401,0.00016272852,0.00011659389],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020195315,0.00009836736,0.00009738809,0.000022675962,0.00032085838,0.000031446994,0.00008443225,0.00007203332,0.000018864273],"category_scores_gemma":[0.0014392554,0.00007952469,0.00011295496,0.00011571143,0.00010150023,0.000006865187,0.000054884462,0.000052010284,0.000010190421],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009434484,0.0003891182,0.9868728,0.000026135249,0.000034426568,4.007585e-8,0.000025149428,0.0000029547487,0.011273912,0.00034889884,0.00043524135,0.00058187224],"study_design_scores_gemma":[0.0002633965,0.00010756619,0.9944515,0.000007753443,0.00004892744,0.0000040368204,0.00008026809,0.000008134949,0.0024246967,0.00012443586,0.0023717072,0.000107558],"about_ca_topic_score_codex":0.00041641996,"about_ca_topic_score_gemma":0.002314443,"teacher_disagreement_score":0.008849216,"about_ca_system_score_codex":0.000026030304,"about_ca_system_score_gemma":0.00010972647,"threshold_uncertainty_score":0.32429227},"labels":[],"label_agreement":null},{"id":"W2074727290","doi":"10.1128/jb.186.4.1065-1077.2004","title":"Real-Time Monitoring of Intracellular<i>Staphylococcus aureus</i>Replication","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council","keywords":"Biology; Staphylococcus aureus; Microbiology; Replication (statistics); Intracellular; Staphylococcus; Staphylococcal infections; Bacteria; Genetics; Virology","score_opus":0.014096336764907234,"score_gpt":0.26568942814978963,"score_spread":0.2515930913848824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074727290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864197,0.000095384676,0.0005215675,0.00019898788,0.00035459592,0.00007415817,0.000004961195,0.0000057360307,0.000102653605],"genre_scores_gemma":[0.99440503,0.00016654897,0.004789069,0.000017934131,0.00052041153,0.0000019478873,0.000021429549,0.000012073627,0.00006555981],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892783,0.00008656426,0.00059499574,0.00018032096,0.000077929726,0.00013237799],"domain_scores_gemma":[0.99859494,0.000019502359,0.0006211226,0.00037068076,0.0003253742,0.00006840085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005106363,0.000097019925,0.00023125921,0.000071166716,0.000035258858,0.000013871409,0.00021811255,0.00014051974,0.000026833965],"category_scores_gemma":[0.0003573917,0.0000907066,0.000116589814,0.00007088844,0.00007738072,0.000010040581,0.00004683193,0.00010108823,0.000007370978],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009569154,0.00007064781,0.007994873,0.00001312977,0.000036315974,0.0000021993103,0.000063167645,0.000060957733,0.9904908,0.000039969953,0.000045541237,0.0010867215],"study_design_scores_gemma":[0.0005249635,0.00044628978,0.1000385,0.000030879357,0.000020344833,0.000049435115,0.000051386567,0.0000030933934,0.8973286,0.00020297644,0.0012117361,0.00009175626],"about_ca_topic_score_codex":0.000019890542,"about_ca_topic_score_gemma":0.0000017310019,"teacher_disagreement_score":0.09316214,"about_ca_system_score_codex":0.000030664025,"about_ca_system_score_gemma":0.0001269659,"threshold_uncertainty_score":0.36989078},"labels":[],"label_agreement":null},{"id":"W2075322797","doi":"10.1007/s10561-009-9155-y","title":"Heart valve allograft decontamination with antibiotics: impact of the temperature of incubation on efficacy","year":2010,"lang":"en","type":"article","venue":"Cell and Tissue Banking","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Héma-Québec","funders":"","keywords":"Human decontamination; Incubation; Microbiology; Gentamicin; Staphylococcus epidermidis; Antibiotics; Cefoxitin; Propionibacterium; Vancomycin; Brain heart infusion; Agar; Staphylococcus aureus; Biology; Bacteria; Medicine; Biochemistry; Pathology","score_opus":0.004994714012034415,"score_gpt":0.2486775518462741,"score_spread":0.2436828378342397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075322797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994963,0.000028687822,0.00002568317,0.000028292206,0.00007846438,0.00012454165,0.000004858699,0.0000031895845,0.00021003054],"genre_scores_gemma":[0.9995573,0.000003898512,0.00026188744,0.000013808305,0.00005043351,3.2424686e-7,0.000031120333,0.000006307868,0.0000748925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996043,0.000029661192,0.000115242525,0.00013315724,0.00005658293,0.00006107099],"domain_scores_gemma":[0.9995961,0.000017923176,0.0000963337,0.00018744962,0.00008440706,0.000017767677],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012305671,0.00006410041,0.00007685072,0.000020397714,0.00005136138,0.000016546794,0.000060854298,0.00007941542,0.000014361272],"category_scores_gemma":[0.00006216269,0.000042117652,0.00004457163,0.00005550668,0.000057923695,0.0000036937981,0.000023110251,0.000071442024,3.8008437e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001813165,0.00004803477,0.055235736,0.00001848609,0.0000088615725,4.521495e-8,0.00008726975,0.000017403863,0.94357425,0.00003873905,0.000018192492,0.0009348421],"study_design_scores_gemma":[0.00017486977,0.00015368087,0.40555754,0.000016023854,0.000009029304,0.0000022375011,0.0000121970315,0.000013069851,0.59391373,0.000017364453,0.000093065064,0.0000372186],"about_ca_topic_score_codex":0.000029306877,"about_ca_topic_score_gemma":0.00006131207,"teacher_disagreement_score":0.3503218,"about_ca_system_score_codex":0.0000028918557,"about_ca_system_score_gemma":0.000024515992,"threshold_uncertainty_score":0.1717508},"labels":[],"label_agreement":null},{"id":"W2076322521","doi":"10.1016/s0924-8579(99)00131-4","title":"Trends in antimicrobial susceptibility of bacterial pathogens isolated from patients with bloodstream infections in the USA, Canada and Latin America","year":2000,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":126,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"cons; Latin Americans; Antibiotic resistance; Staphylococcus aureus; Antimicrobial; Microbiology; Drug resistance; Medicine; Staphylococcal infections; Bloodstream infection; Antibiotics; Biology; Bacteria","score_opus":0.007995208655041835,"score_gpt":0.2312344074390499,"score_spread":0.22323919878400808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076322521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991486,0.0000026199582,0.000011636595,0.00015731926,0.00028099323,0.00007295863,0.0002899486,0.00000104124,0.000034868946],"genre_scores_gemma":[0.99906415,0.000029347082,0.00019532087,0.00019301806,0.00012145756,6.618856e-7,0.00035956744,0.000007508584,0.000028963414],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988563,0.00013859304,0.0005260996,0.00018269279,0.00017555575,0.00012077928],"domain_scores_gemma":[0.99930954,0.000027538881,0.0002774939,0.00013057208,0.00021894675,0.00003590585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014129361,0.00011480136,0.00017442876,0.00010705204,0.000029766332,0.000043633772,0.00025249898,0.00006170159,0.00036609216],"category_scores_gemma":[0.00006352937,0.00009083759,0.000055149874,0.00015086717,0.000074854644,0.000020422889,0.00003566643,0.00012385493,8.156266e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040201203,0.00046090822,0.76157117,0.0000025346246,0.000054583837,0.000009398235,0.00017270521,0.00010569678,0.23224469,2.4257585e-7,0.00056272955,0.00441334],"study_design_scores_gemma":[0.0017566642,0.00015500071,0.99164796,0.00004605054,0.000016944825,0.0000168699,0.000026124284,0.000017665734,0.0054506008,0.000001537001,0.0007654097,0.00009916087],"about_ca_topic_score_codex":0.09372089,"about_ca_topic_score_gemma":0.48551616,"teacher_disagreement_score":0.39179528,"about_ca_system_score_codex":0.00004169113,"about_ca_system_score_gemma":0.000133836,"threshold_uncertainty_score":0.9123141},"labels":[],"label_agreement":null},{"id":"W2077458605","doi":"10.1016/s0732-8893(01)00340-6","title":"Training costs and investment payback of implementing molecular diagnostics for identification of vancomycin resistant enterococci in a clinical microbiology laboratory","year":2002,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University; St. Joseph's Hospital; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Identification (biology); Medical physics; Molecular diagnostics; Sample (material); Medicine; Biology; Bioinformatics; Chromatography; Chemistry","score_opus":0.01786185130771418,"score_gpt":0.2831426287053857,"score_spread":0.26528077739767153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077458605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99601626,0.0021717583,0.00048060686,0.00005809502,0.00014115928,0.0005668792,0.0005317812,0.000007580372,0.00002585163],"genre_scores_gemma":[0.9983113,0.00072598644,0.00015524565,0.00028803165,0.000035427987,0.000072997595,0.00038944706,0.000013130978,0.000008450384],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99822694,0.00028488142,0.0008282405,0.00041795857,0.000017082519,0.00022490272],"domain_scores_gemma":[0.9985896,0.00057536474,0.0003567096,0.00023255762,0.00015144414,0.00009435814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006532125,0.00014763924,0.0002927363,0.00008326426,0.000061048355,0.000011980794,0.00008007068,0.00015091832,0.000012215234],"category_scores_gemma":[0.004446018,0.0001561643,0.00007260631,0.00008154047,0.0002932681,0.000007732325,0.00008928301,0.000076036435,7.137622e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072508315,0.00025479935,0.17776565,0.00013089368,0.00004770801,0.0000019431473,0.00011700338,0.000002965427,0.81954414,0.00046488605,0.00022428314,0.0013732404],"study_design_scores_gemma":[0.011442216,0.0028814974,0.6289166,0.00054753205,0.00061459106,0.000052947147,0.00083252945,0.00047853365,0.33393317,0.0016302611,0.017335184,0.0013348757],"about_ca_topic_score_codex":0.000013931475,"about_ca_topic_score_gemma":0.0001207094,"teacher_disagreement_score":0.48561093,"about_ca_system_score_codex":0.000015649895,"about_ca_system_score_gemma":0.00004016144,"threshold_uncertainty_score":0.63681954},"labels":[],"label_agreement":null},{"id":"W2078860817","doi":"10.1007/s10096-014-2252-2","title":"Performance evaluation of the Verigene® (Nanosphere) and FilmArray® (BioFire®) molecular assays for identification of causative organisms in bacterial bloodstream infections","year":2014,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"National Institute for Health and Care Research","keywords":"Medical microbiology; Microbiology; Blood culture; Bacteremia; Antimicrobial; Pseudomonas aeruginosa; Medicine; Antimicrobial stewardship; Antibiotic resistance; Biology; Bacteria; Antibiotics","score_opus":0.019930320129210255,"score_gpt":0.30096798710758754,"score_spread":0.2810376669783773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078860817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982659,0.00007929199,0.0005141475,0.000040026094,0.0007033366,0.00025926784,0.000053181702,0.0000034166242,0.00008139768],"genre_scores_gemma":[0.9995628,0.0000611728,0.00008608213,0.000038405222,0.00017440745,0.000003868583,0.00004958137,0.000013741523,0.000009935057],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99669373,0.0017599165,0.0011759887,0.0002057115,0.000062316416,0.000102362974],"domain_scores_gemma":[0.9976603,0.00017259203,0.0011811496,0.00024469683,0.0006913158,0.000049948867],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029969623,0.00010817081,0.00028271094,0.000044070006,0.000064228225,0.00001400584,0.00016122802,0.00008107647,0.000018627687],"category_scores_gemma":[0.0049102567,0.00008630024,0.00018652009,0.00009703769,0.00027200909,0.0000127241,0.000065813205,0.0001039982,0.0000010172542],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007355152,0.0002484478,0.23665224,0.000022048192,0.00006450296,8.614905e-8,0.000030774157,0.00014581556,0.75686365,0.000009878516,0.0000428329,0.005846199],"study_design_scores_gemma":[0.0023779233,0.001156274,0.8286925,0.00006382158,0.00026403635,0.000023042214,0.000032877833,0.00012585752,0.16653836,0.00006850167,0.0005448579,0.00011193399],"about_ca_topic_score_codex":0.0000058926416,"about_ca_topic_score_gemma":0.000031588024,"teacher_disagreement_score":0.5920403,"about_ca_system_score_codex":0.000013591731,"about_ca_system_score_gemma":0.00016346002,"threshold_uncertainty_score":0.58783907},"labels":[],"label_agreement":null},{"id":"W2080450388","doi":"10.1186/1471-2334-14-36","title":"Independent influence of negative blood cultures and bloodstream infections on in-hospital mortality","year":2014,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Ottawa Hospital; University of Ottawa","funders":"","keywords":"Medicine; Blood culture; Medical microbiology; Bloodstream infection; Hazard ratio; Intensive care unit; Bacteremia; Internal medicine; Proportional hazards model; Emergency medicine; Intensive care medicine; Immunology; Confidence interval; Antibiotics; Biology; Microbiology","score_opus":0.006300306791622706,"score_gpt":0.25841649594763616,"score_spread":0.25211618915601347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080450388","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992631,0.00002962953,0.000033381097,0.000010771557,0.00007383059,0.00018696372,0.000030367937,0.000023835459,0.00034812314],"genre_scores_gemma":[0.99974585,0.000023910721,0.000024909212,0.000036960413,0.0000714226,0.000032397424,0.000033275082,0.000007952222,0.000023324983],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99919075,0.00011161041,0.00021360537,0.00028536253,0.00008557387,0.000113079164],"domain_scores_gemma":[0.99942344,0.00005373524,0.000111548994,0.00024030404,0.00010000627,0.00007097826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009925446,0.00011439627,0.0001305448,0.000052122352,0.00006740202,0.000030052306,0.000055274933,0.00007630697,0.000008079122],"category_scores_gemma":[0.0013084376,0.00011004612,0.00005683601,0.00009163682,0.00010826341,0.000009345245,0.00005447156,0.00005998255,0.0000021779472],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011658215,0.0008173855,0.96084994,0.000042136347,0.000028803108,2.785916e-7,0.00005947127,0.00045360587,0.03729187,0.00033906006,0.00001486448,0.00009093934],"study_design_scores_gemma":[0.0007009818,0.00042447186,0.9840802,0.000024441086,0.000045301767,0.0000024571013,0.000042527226,0.000019802603,0.014059249,0.00043972358,0.000037111404,0.00012374774],"about_ca_topic_score_codex":0.00031820283,"about_ca_topic_score_gemma":0.0012767442,"teacher_disagreement_score":0.02323262,"about_ca_system_score_codex":0.0000083346295,"about_ca_system_score_gemma":0.000042201653,"threshold_uncertainty_score":0.44875506},"labels":[],"label_agreement":null},{"id":"W2081835782","doi":"10.1128/jcm.39.10.3481-3485.2001","title":"Development of a Canadian Standardized Protocol for Subtyping Methicillin-Resistant <i>Staphylococcus aureus</i> Using Pulsed-Field Gel Electrophoresis","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":253,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture Food and Rural Development; Sunnybrook Health Science Centre; St. Boniface Hospital; Public Health Agency of Canada; Institut National de Santé Publique du Québec; Health Canada","funders":"","keywords":"Pulsed-field gel electrophoresis; Subtyping; Protocol (science); Fingerprint (computing); Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Gel electrophoresis; Micrococcaceae; Biology; Microbiology; Computer science; Medicine; Artificial intelligence; Bacteria; Genetics; Pathology; Genotype","score_opus":0.09420988848563122,"score_gpt":0.39745686372090494,"score_spread":0.3032469752352737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081835782","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9859547,0.00004962335,0.0062371716,0.00035495916,0.0002670496,0.0070369947,0.000030884752,0.0000033737558,0.00006524212],"genre_scores_gemma":[0.8871345,0.00006296338,0.10881703,0.0012818135,0.0010065212,0.0014823147,0.000055512577,0.000051776762,0.000107562075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971659,0.0002698626,0.0019088805,0.0002655915,0.000058906968,0.00033083206],"domain_scores_gemma":[0.9974534,0.00022968248,0.0010439187,0.00022950262,0.0008541324,0.00018934763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027618401,0.0001532709,0.0005566946,0.00021032536,0.000121567,0.000021325279,0.00029236233,0.00039673437,0.000044810058],"category_scores_gemma":[0.0026799852,0.00013044047,0.00033381427,0.00018174929,0.00009517466,0.0000060201824,0.00004483514,0.00025108163,7.866742e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002464074,0.00009267499,0.0021872658,0.0000401441,0.00013964948,0.0000027248323,0.00003209907,0.000008295642,0.99175334,0.000012321071,0.0009525261,0.002314865],"study_design_scores_gemma":[0.0021861065,0.0007124269,0.0010741703,0.00007275329,0.000039556624,0.000017615435,0.00004711269,0.000014264804,0.58480597,0.000051877374,0.41081482,0.0001633473],"about_ca_topic_score_codex":0.0003709045,"about_ca_topic_score_gemma":0.0083347345,"teacher_disagreement_score":0.4098623,"about_ca_system_score_codex":0.000053918968,"about_ca_system_score_gemma":0.0018926059,"threshold_uncertainty_score":0.53192085},"labels":[],"label_agreement":null},{"id":"W2082454363","doi":"10.1503/cmaj.109-4792","title":"Feds to create surveillance system for drug-resistant bugs","year":2014,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Agency (philosophy); Government (linguistics); Public health surveillance; Drug resistance; Health surveillance; Public health; Medicine; Computer science; Environmental health; Biology; Pathology; Microbiology; Sociology","score_opus":0.005533717819736117,"score_gpt":0.22476846606960005,"score_spread":0.21923474824986394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082454363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97632843,0.000046374058,0.003711312,0.015846275,0.001615812,0.00022734948,0.00008000706,0.000020303316,0.0021241345],"genre_scores_gemma":[0.9939341,0.0000048301044,0.0003255326,0.0025909494,0.0017785378,0.00001205866,0.000046330468,0.000012793095,0.001294845],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987343,0.00017844277,0.00030506347,0.00017779558,0.00030494432,0.00029947402],"domain_scores_gemma":[0.99830884,0.00006619368,0.00013044098,0.00012995428,0.00045161007,0.0009129739],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002521318,0.00007931516,0.0001296537,0.000052007705,0.00024762633,0.000119793614,0.00018613704,0.0001747215,0.00009588943],"category_scores_gemma":[0.004219305,0.000078579156,0.00007442792,0.00007713692,0.000011545162,0.000003415466,0.000013447279,0.0001238982,0.000040733954],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018722507,0.00006862955,0.13055433,0.0001521765,0.0002766842,0.000021256363,0.0004089077,0.000042732012,0.18061757,0.002173281,0.63266087,0.052836355],"study_design_scores_gemma":[0.00064676144,0.00008509328,0.039787274,0.00004250319,0.000008305051,0.000032111468,0.00019813294,0.0002372491,0.0016968583,0.000027380283,0.9570523,0.00018602496],"about_ca_topic_score_codex":0.0008232969,"about_ca_topic_score_gemma":0.034773894,"teacher_disagreement_score":0.32439145,"about_ca_system_score_codex":0.00026910586,"about_ca_system_score_gemma":0.0006200701,"threshold_uncertainty_score":0.982839},"labels":[],"label_agreement":null},{"id":"W2085682186","doi":"10.1016/j.ccc.2009.08.004","title":"Optimizing Antimicrobial Therapy in Sepsis and Septic Shock","year":2009,"lang":"en","type":"review","venue":"Critical Care Clinics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Septic shock; Sepsis; Antibiotics; Intensive care medicine; Antimicrobial; Antibiotic therapy; Pseudomonas aeruginosa; Shock (circulatory); Antibiotic resistance; Empiric therapy; Surgery; Internal medicine; Bacteria; Microbiology","score_opus":0.07753945799240654,"score_gpt":0.4091756262117981,"score_spread":0.33163616821939157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085682186","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034355696,0.99550265,0.0000363994,0.00006253143,0.0003395953,0.00033914793,0.000043434247,0.000019331805,0.00022133782],"genre_scores_gemma":[0.0057409937,0.9915409,0.0014707576,0.00037556165,0.0003342675,0.000015338272,0.00042691643,0.000040556286,0.000054720243],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99808824,0.00023819739,0.00066762324,0.0006574812,0.00007346244,0.0002749661],"domain_scores_gemma":[0.99906063,0.000170401,0.0000832489,0.00043199633,0.00014187052,0.000111867],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027730712,0.00028770708,0.00075325574,0.00006670261,0.0000678475,0.000117914366,0.00020498279,0.0006157405,0.000017236518],"category_scores_gemma":[0.001171504,0.00027737414,0.00028318234,0.000112299036,0.00013752747,0.0000043751547,0.00010772402,0.00032940868,0.000011114436],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013238446,0.000086096225,0.00009547884,0.00402871,0.000021120391,0.000010411944,0.00008333465,4.9511704e-7,0.00033382737,0.000048090395,0.00020649744,0.9950727],"study_design_scores_gemma":[0.00041514117,0.00032988403,0.00006709393,0.0027667838,0.00017929492,0.000030347832,0.000120831864,0.0000094111465,0.00006528116,0.00004175445,0.9953204,0.00065380783],"about_ca_topic_score_codex":0.00000232648,"about_ca_topic_score_gemma":0.000016629234,"teacher_disagreement_score":0.99511385,"about_ca_system_score_codex":0.00002367657,"about_ca_system_score_gemma":0.00017650813,"threshold_uncertainty_score":0.9999679},"labels":[],"label_agreement":null},{"id":"W2085764445","doi":"10.1371/journal.pone.0085278","title":"Linkage, Evaluation and Analysis of National Electronic Healthcare Data: Application to Providing Enhanced Blood-Stream Infection Surveillance in Paediatric Intensive Care","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Hospital for Sick Children; Intensive Care Society; University of Oxford; National Institute for Health and Care Research; NHS Health Scotland","keywords":"Medicine; Gold standard (test); Identifier; Bloodstream infection; Blood stream; Intensive care; Linkage (software); Imputation (statistics); Audit; Bacteremia; Health care; Emergency medicine; Pediatrics; Missing data; Intensive care medicine; Internal medicine; Statistics; Computer science","score_opus":0.038661746982694804,"score_gpt":0.3035097646493432,"score_spread":0.2648480176666484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085764445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99826777,0.00036968398,0.00039579973,0.00017790728,0.000011310326,0.0007073905,0.000044094893,0.00000846545,0.000017565624],"genre_scores_gemma":[0.99651414,0.00017172201,0.00027334454,0.000072588075,0.000059534064,0.0001301385,0.0027640332,0.0000061650276,0.0000083354025],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989836,0.00011289133,0.00024407286,0.00036113567,0.00018615408,0.0001121231],"domain_scores_gemma":[0.9976564,0.000026906679,0.00012858938,0.0002761994,0.0018767995,0.000035129702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042286215,0.00006865121,0.00014326147,0.00016933694,0.000033809483,0.000021597622,0.00007900932,0.000062598876,0.0000070592278],"category_scores_gemma":[0.0012847459,0.0000774855,0.000019428602,0.00051153754,0.000013247567,0.000014702237,0.00007077982,0.000058772708,0.0000022771908],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009796846,0.0000933698,0.18655434,0.00007023443,0.00013501021,9.0311225e-9,0.00022391132,0.00008025499,0.80914795,0.00000740974,0.0000053388526,0.003672374],"study_design_scores_gemma":[0.00039478822,0.00016673036,0.82391024,0.000028124128,0.00026755565,2.5036795e-7,0.00031469212,0.01049226,0.16420014,0.000057943205,0.000010230494,0.00015702275],"about_ca_topic_score_codex":0.0004214915,"about_ca_topic_score_gemma":0.0033021541,"teacher_disagreement_score":0.6449478,"about_ca_system_score_codex":0.000054950793,"about_ca_system_score_gemma":0.000109970344,"threshold_uncertainty_score":0.3159767},"labels":[],"label_agreement":null},{"id":"W2086862244","doi":"10.1016/j.ccell.2010.12.005","title":"Optimizing Antimicrobial Therapy in Sepsis and Septic Shock","year":2011,"lang":"en","type":"review","venue":"Critical Care Nursing Clinics of North America","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Septic shock; Sepsis; Intensive care medicine; Antibiotics; Antimicrobial; Antibiotic therapy; Empiric therapy; Pseudomonas aeruginosa; Combination therapy; Shock (circulatory); Antibiotic resistance; Surgery; Internal medicine; Bacteria; Microbiology","score_opus":0.06838499426411113,"score_gpt":0.3889177781072606,"score_spread":0.3205327838431494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086862244","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010055167,0.98855275,0.0001582699,0.000027799719,0.00045273307,0.00036285052,0.000105976724,0.000017048562,0.00026739805],"genre_scores_gemma":[0.033134963,0.9622713,0.0037669225,0.00010843186,0.00016088177,0.00001369685,0.00047732264,0.000055390145,0.000011142813],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99789864,0.00024248913,0.00083208433,0.0006423852,0.00008218774,0.00030222908],"domain_scores_gemma":[0.9987701,0.00017829619,0.0002213149,0.00048182273,0.00022234429,0.0001260847],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00014047849,0.00030893268,0.0009809709,0.000109384615,0.00006470466,0.00004100281,0.00026011048,0.00031926695,0.000015674426],"category_scores_gemma":[0.0008525633,0.0003096132,0.00031823904,0.0001959303,0.00058205414,0.0000053405943,0.00007718961,0.00030005747,0.0000047183244],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025109339,0.000113114715,0.00031420658,0.0024723872,0.000023861416,0.0000020677678,0.00025101076,6.4968617e-7,0.000056383076,0.000008312507,0.000056414436,0.9966765],"study_design_scores_gemma":[0.0010482073,0.0019188214,0.001574868,0.01744329,0.00097271125,0.00005546778,0.00069761625,0.00003173793,0.00011579859,0.000069738024,0.9740867,0.0019850477],"about_ca_topic_score_codex":0.000016084356,"about_ca_topic_score_gemma":0.000019267476,"teacher_disagreement_score":0.99469143,"about_ca_system_score_codex":0.00003289082,"about_ca_system_score_gemma":0.00021779812,"threshold_uncertainty_score":0.99993557},"labels":[],"label_agreement":null},{"id":"W2087113319","doi":"10.1042/bst20120253","title":"How Bugs Kill Bugs: Progress and Challenges in Bacteriocin Research","year":2012,"lang":"en","type":"article","venue":"Biochemical Society Transactions","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Bacteriocin; Honour; Colicin; Library science; Biology; Political science; Microbiology; Computer science; Escherichia coli; Law; Genetics","score_opus":0.12103864365027645,"score_gpt":0.32860405645447366,"score_spread":0.2075654128041972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087113319","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866871,0.007091439,0.00033954435,0.0054144473,0.00012240859,0.00021987483,0.000016499485,0.000026680751,0.00008199673],"genre_scores_gemma":[0.9944736,0.0032363683,0.0016035694,0.000043016193,0.00023699424,0.00007260162,0.000045712306,0.00001687874,0.00027126932],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988485,0.00009913764,0.00015494094,0.00035111821,0.0001438317,0.00040247967],"domain_scores_gemma":[0.9994394,0.00003473264,0.000028634751,0.00024761018,0.000085118474,0.00016447785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057683437,0.00012096972,0.00011631263,0.000025432708,0.00014285767,0.000072241055,0.00011530595,0.00027157154,0.000018399496],"category_scores_gemma":[0.00007472759,0.000121822755,0.00009980446,0.00012991001,0.00027846097,0.000018803878,0.000027976057,0.0002312289,0.0000036112997],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015936925,0.00022739482,0.002279297,0.00008163028,0.000023087136,1.04751834e-7,0.00068441674,6.6583766e-8,0.9844166,0.00003367878,0.00027238755,0.011965387],"study_design_scores_gemma":[0.0013427532,0.00019466241,0.13448831,0.00009504348,0.000039211533,0.000035440626,0.0069866646,0.00007026371,0.71379775,0.000091152135,0.14211252,0.000746217],"about_ca_topic_score_codex":0.000016446058,"about_ca_topic_score_gemma":0.000015754511,"teacher_disagreement_score":0.27061886,"about_ca_system_score_codex":0.000035638182,"about_ca_system_score_gemma":0.000027002381,"threshold_uncertainty_score":0.4967788},"labels":[],"label_agreement":null},{"id":"W2091813049","doi":"10.1016/j.mimet.2013.06.020","title":"Evaluation of MALDI-TOF mass spectroscopy methods for determination of Escherichia coli pathotypes","year":2013,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Government of Canada","keywords":"Escherichia coli; Mass spectrometry; Biology; Chromatography; Computational biology; Microbiology; Chemistry; Genetics; Gene","score_opus":0.0675315565453589,"score_gpt":0.42677347853895437,"score_spread":0.35924192199359545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091813049","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5609476,0.0003098483,0.43819764,0.000049220285,0.00019652241,0.00024607647,0.00000639825,0.0000017375717,0.00004494484],"genre_scores_gemma":[0.2910326,0.00003804301,0.7087693,0.000028132905,0.00007979623,0.000011164383,0.000011891724,0.000006311449,0.000022713453],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967637,0.0020705995,0.0007657279,0.00017451352,0.00009626453,0.00012917447],"domain_scores_gemma":[0.9967121,0.000295455,0.0009337178,0.00018148622,0.0018292653,0.00004800842],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009320406,0.00011075937,0.00034226297,0.00005929219,0.000030242962,0.000015710451,0.00020436992,0.00019991188,0.00012658752],"category_scores_gemma":[0.005492031,0.00008341701,0.00021147047,0.00009239088,0.000096270756,0.000010734057,0.00003766054,0.00009246822,6.4326724e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007060749,0.000075729025,0.00031318658,0.000025626923,0.00003355625,3.5233786e-8,0.000022221098,0.0000073655788,0.9094785,0.000018469078,0.000053113192,0.089901626],"study_design_scores_gemma":[0.00051716715,0.0007676709,0.007644287,0.000020817375,0.000121674784,0.0000075199478,0.00006491917,0.0007658833,0.9863097,0.003047329,0.0006464626,0.000086560474],"about_ca_topic_score_codex":0.00000455314,"about_ca_topic_score_gemma":9.466615e-7,"teacher_disagreement_score":0.27057168,"about_ca_system_score_codex":0.00002856599,"about_ca_system_score_gemma":0.00010355669,"threshold_uncertainty_score":0.6574871},"labels":[],"label_agreement":null},{"id":"W2092007410","doi":"10.1128/jcm.02877-12","title":"CHROMagar Orientation Medium Reduces Urine Culture Workload","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health","funders":"","keywords":"Workload; Urine; Turnaround time; Confidence interval; Medicine; Computer science; Internal medicine; Operating system","score_opus":0.027908137136983705,"score_gpt":0.3480904810799566,"score_spread":0.3201823439429729,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092007410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99651253,0.00041359576,0.00012075921,0.0009822595,0.0016533348,0.000097434975,0.000004222286,0.000005154108,0.00021070796],"genre_scores_gemma":[0.9942011,0.00029296952,0.0023154253,0.00057294057,0.001620187,0.0000022789939,0.000049322876,0.000008667299,0.0009370666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983201,0.00024964815,0.001041971,0.00020399704,0.000036489473,0.00014780411],"domain_scores_gemma":[0.9984951,0.000063624204,0.0006579046,0.00017394288,0.00049987476,0.00010952695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007448783,0.00009934932,0.00028280716,0.000031840802,0.00004165472,0.000030410143,0.00022812939,0.00027328686,0.0002756281],"category_scores_gemma":[0.0015983505,0.000074113545,0.00019199378,0.000060937124,0.00014797755,0.000011070562,0.000059706555,0.00022883285,0.00007355687],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000689712,0.000104050465,0.007288165,0.0000045207744,0.000050912182,0.0000011217069,0.000026807094,0.0000011072563,0.9687392,0.000004749092,0.019830387,0.003880006],"study_design_scores_gemma":[0.0030928156,0.0027514151,0.2200926,0.00009919137,0.0001081962,0.00054190576,0.0003145971,0.0000067058363,0.5156793,0.00045416312,0.25643802,0.00042109127],"about_ca_topic_score_codex":0.0000041917638,"about_ca_topic_score_gemma":0.0000065647664,"teacher_disagreement_score":0.4530599,"about_ca_system_score_codex":0.00000788854,"about_ca_system_score_gemma":0.00010518596,"threshold_uncertainty_score":0.30222625},"labels":[],"label_agreement":null},{"id":"W2096989755","doi":"10.1128/jcm.00593-15","title":"Rapid, Sensitive, and Specific Escherichia coli H Antigen Typing by Matrix-Assisted Laser Desorption Ionization–Time of Flight-Based Peptide Mass Fingerprinting","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada; Nova Scotia Health Authority; University of Alberta Hospital; Alberta Hospital Edmonton; Ste. Anne's Hospital","funders":"","keywords":"Escherichia coli; Mass spectrometry; Serotype; Matrix-assisted laser desorption/ionization; Typing; Antigen; Microbiology; Peptide mass fingerprinting; Chemistry; Biology; Trypsin; Chromatography; Proteomics; Desorption; Biochemistry; Genetics; Gene; Enzyme","score_opus":0.03904217616525236,"score_gpt":0.30966366146611896,"score_spread":0.2706214853008666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096989755","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940916,0.00035441577,0.0047780606,0.0002418257,0.00035513745,0.0000938198,0.000026707814,0.000006195474,0.00005228574],"genre_scores_gemma":[0.9875849,0.00015670738,0.01150228,0.00018644008,0.00027010494,5.287535e-7,0.00012955908,0.000014747598,0.00015474702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979092,0.00051972934,0.0011370478,0.00023943413,0.000044520068,0.00015008362],"domain_scores_gemma":[0.9978826,0.00017932068,0.0009878841,0.00016932425,0.00065980625,0.000121055265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017991024,0.00012158374,0.00040475023,0.000057924226,0.00004645182,0.000027675309,0.00012450814,0.0002673432,0.000027360464],"category_scores_gemma":[0.0014321061,0.00011115426,0.00014092866,0.00010747302,0.00017494857,0.000010056224,0.000050883,0.00017973004,0.000009985284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034591346,0.00009550973,0.012357751,0.000012625609,0.000051383482,0.000001466872,0.000020263622,0.000025313333,0.9835889,0.0000033828835,0.0023845516,0.0011129464],"study_design_scores_gemma":[0.0041803936,0.0011458982,0.0825641,0.00014751384,0.00008574772,0.00011575934,0.00019486975,0.00045145093,0.84680253,0.000040277308,0.06387261,0.000398859],"about_ca_topic_score_codex":0.0000028765376,"about_ca_topic_score_gemma":0.000002799033,"teacher_disagreement_score":0.13678637,"about_ca_system_score_codex":0.000015419939,"about_ca_system_score_gemma":0.00015568452,"threshold_uncertainty_score":0.45327392},"labels":[],"label_agreement":null},{"id":"W2097579273","doi":"10.1093/jac/46.6.1009","title":"Expression of the carbapenemase gene (cfiA) in Bacteroides fragilis","year":2000,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Microbiology; Biology; Imipenem; Carbapenem; Meropenem; Promoter; Gene; Antibiotic resistance; Antibiotics; Gene expression; Genetics","score_opus":0.007469402952741111,"score_gpt":0.2301648036005782,"score_spread":0.22269540064783708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097579273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99911976,0.00006996649,0.000025270303,0.0004262523,0.00014453323,0.00007473561,0.0000054166658,0.0000016407178,0.00013242612],"genre_scores_gemma":[0.9978535,0.00028379532,0.00095527445,0.00044752608,0.00016456853,3.723111e-7,0.000004378382,0.000012276066,0.0002782618],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991758,0.000081653736,0.00042866237,0.00011732519,0.00009058477,0.00010598924],"domain_scores_gemma":[0.99937755,0.000009769415,0.00024901514,0.00023316701,0.00009889385,0.00003163293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025644654,0.000088036686,0.00016648194,0.0000354203,0.000032105465,0.000018771669,0.00025168396,0.00009075329,0.00019528465],"category_scores_gemma":[0.00004675875,0.0000642454,0.00014653367,0.000094019895,0.00005913323,0.000008901564,0.000019845342,0.000101644,0.0000012683292],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002090984,0.00010747035,0.008992314,0.000009313724,0.000009240802,9.115739e-7,0.00010150137,0.000035970537,0.9874673,3.894887e-7,0.0009971372,0.002069382],"study_design_scores_gemma":[0.00080833485,0.00005280227,0.020324858,0.000060081093,0.0000043497157,0.000029956336,0.000017100152,0.0000043142522,0.97394794,0.000008248448,0.0046762596,0.00006575681],"about_ca_topic_score_codex":0.000015381574,"about_ca_topic_score_gemma":0.000012162707,"teacher_disagreement_score":0.013519332,"about_ca_system_score_codex":0.000012476372,"about_ca_system_score_gemma":0.00005985367,"threshold_uncertainty_score":0.26198515},"labels":[],"label_agreement":null},{"id":"W2097928303","doi":"10.1128/jcm.03549-13","title":"Workflow and Maintenance Characteristics of Five Automated Laboratory Instruments for the Diagnosis of Sexually Transmitted Infections","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. John’s Health Sciences Centre; Queen Elizabeth II Health Sciences Centre; Dalhousie University; Centre intégré universitaire de santé et de services sociaux de la Mauricie-et-du-Centre-du-Québec; McMaster University; St. Joseph’s Healthcare Hamilton; McGill University; Memorial University of Newfoundland","funders":"U.S. Food and Drug Administration","keywords":"Workflow; Chlamydia trachomatis; Roche Diagnostics; Turnaround time; Sample (material); Medicine; Computer science; Gynecology; Chromatography; Internal medicine; Database; Operating system","score_opus":0.020870394018138626,"score_gpt":0.3227179644080006,"score_spread":0.301847570389862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097928303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99760133,0.00006151743,0.0012542198,0.00034573677,0.0005144719,0.00011437002,0.00010071588,0.0000035933595,0.00000403681],"genre_scores_gemma":[0.99805874,0.00028603058,0.0012453059,0.00019993122,0.00015815004,0.0000040478717,0.000021335482,0.000006288479,0.000020160769],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99857897,0.00022793449,0.00096679927,0.00011565735,0.000020665817,0.000089967376],"domain_scores_gemma":[0.9978344,0.0006336292,0.00083491736,0.00014524335,0.0005127472,0.000039098955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001154411,0.0000702443,0.0003258304,0.000026561058,0.000035822377,0.000006368552,0.0001356343,0.00016340116,0.0000066603507],"category_scores_gemma":[0.0034531315,0.00004899884,0.00011862698,0.000055131004,0.0002516042,0.000004073246,0.000028824676,0.00011024201,2.7436099e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030829757,0.0002624439,0.17140496,0.000052321764,0.00019427207,1.2207319e-7,0.0000454207,0.0000045998086,0.80816907,0.00003441317,0.0010460838,0.018478028],"study_design_scores_gemma":[0.0036022048,0.003128126,0.8961336,0.00015176974,0.00022375635,0.000042657455,0.00008732834,0.000531376,0.05407102,0.00015912253,0.041675773,0.00019327995],"about_ca_topic_score_codex":0.0000037558802,"about_ca_topic_score_gemma":0.000014021659,"teacher_disagreement_score":0.754098,"about_ca_system_score_codex":0.000003245135,"about_ca_system_score_gemma":0.00008022702,"threshold_uncertainty_score":0.41339704},"labels":[],"label_agreement":null},{"id":"W2098284425","doi":"10.1128/jcm.02878-12","title":"Carbapenem Disks on MacConkey Agar in Screening Methods for Detection of Carbapenem-Resistant Gram-Negative Rods in Stools","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University Health Centre; Hôpital du Sacré-Cœur de Montréal; Université de Montréal","funders":"Centers for Disease Control and Prevention","keywords":"Ertapenem; Meropenem; MacConkey agar; Imipenem; Carbapenem; Microbiology; Agar; Agar dilution; Gram; Biology; Medicine; Antibiotics; Bacteria; Minimum inhibitory concentration; Antibiotic resistance","score_opus":0.09476670221305057,"score_gpt":0.45710937208404306,"score_spread":0.3623426698709925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098284425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923745,0.0002557702,0.006175656,0.000108948,0.0007906374,0.00022377484,0.000017388817,0.0000021282362,0.000051227482],"genre_scores_gemma":[0.97998106,0.00008089655,0.019409403,0.00013386754,0.0003274705,0.000006793597,0.000018037508,0.000013490226,0.00002897357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969168,0.0010251274,0.0015441572,0.00022691218,0.000032270273,0.00025475732],"domain_scores_gemma":[0.99771315,0.0008927959,0.0008932105,0.00019988121,0.00021704489,0.00008394323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00436602,0.000131372,0.0005567028,0.00017601904,0.000026263937,0.00000912329,0.00019404429,0.00033970503,0.000010693572],"category_scores_gemma":[0.005542111,0.000113386355,0.0002679304,0.00014957573,0.0001171825,0.000011746608,0.000057645077,0.00031924283,8.1865346e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013753057,0.00021381347,0.025555238,0.0000172162,0.000045377426,4.913085e-7,0.00004745667,0.00002375104,0.9432558,0.000016927175,0.0000253179,0.029423313],"study_design_scores_gemma":[0.0030216067,0.0017545761,0.28091472,0.00010173113,0.00004615604,0.000027050415,0.00021076071,0.00004987147,0.70645267,0.00018833713,0.007022061,0.00021045697],"about_ca_topic_score_codex":0.000055248496,"about_ca_topic_score_gemma":0.00027390264,"teacher_disagreement_score":0.25535947,"about_ca_system_score_codex":0.000023703133,"about_ca_system_score_gemma":0.000069403475,"threshold_uncertainty_score":0.66348255},"labels":[],"label_agreement":null},{"id":"W2099815913","doi":"10.1039/b822669e","title":"Rapid identification of Burkholderia cepacia complex species including strains of the novel Taxon K, recovered from cystic fibrosis patients by intact cell MALDI-ToF mass spectrometry","year":2009,"lang":"en","type":"article","venue":"The Analyst","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Consejo Nacional de Investigaciones Científicas y Técnicas; Cystic Fibrosis Foundation","keywords":"Cystic fibrosis; Burkholderia cepacia complex; Mass spectrometry; Microbiology; Burkholderia; Taxon; Identification (biology); Biology; Chemistry; Bacteria; Chromatography; Botany; Genetics","score_opus":0.028288394747323267,"score_gpt":0.24633088491457236,"score_spread":0.21804249016724908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099815913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954712,0.00006993056,0.0026812463,0.00014869052,0.0001077762,0.00020233076,0.00093258027,0.00000689196,0.00037937524],"genre_scores_gemma":[0.997796,0.000030483605,0.0007061169,0.00005117694,0.00007314774,0.0000023883842,0.0010662266,0.000009911169,0.0002645466],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868506,0.00013558287,0.0005511635,0.00027917474,0.00020265067,0.00014637306],"domain_scores_gemma":[0.99849504,0.00003807222,0.00059835624,0.0006805663,0.0001551043,0.00003288137],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003166175,0.00013806541,0.00021535301,0.00004709867,0.00012617576,0.00004681712,0.0004505392,0.00008170312,0.00012198704],"category_scores_gemma":[0.00021316033,0.00010204742,0.00016203336,0.00028761697,0.00010397069,0.000010516853,0.00008081968,0.00007935883,0.0000030442782],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003705696,0.00013688364,0.0036619825,0.00001488548,0.00004591371,2.3019672e-8,0.00009101479,0.000015877838,0.9951589,0.000018793387,0.0006343772,0.00018426769],"study_design_scores_gemma":[0.00027418637,0.00007497218,0.2808855,0.000015090402,0.00006496194,1.5816627e-7,0.00019126505,0.00012136966,0.71779925,0.00008689671,0.0003965857,0.00008976194],"about_ca_topic_score_codex":0.0001453101,"about_ca_topic_score_gemma":0.000038749782,"teacher_disagreement_score":0.27735966,"about_ca_system_score_codex":0.00003193523,"about_ca_system_score_gemma":0.000025041481,"threshold_uncertainty_score":0.41613734},"labels":[],"label_agreement":null},{"id":"W2100109689","doi":"10.1016/j.mimet.2012.11.013","title":"Effect of gamma radiation on the identification of bacterial pathogens by MALDI-TOF MS","year":2012,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Korea Electrotechnology Research Institute","keywords":"Bacteria; Matrix-assisted laser desorption/ionization; Gamma irradiation; Identification (biology); Microbiology; Mass spectrometry; Irradiation; Chemistry; Biology; Chromatography; Physics; Genetics; Botany","score_opus":0.019204263888398597,"score_gpt":0.33692921185646996,"score_spread":0.3177249479680714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100109689","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99486864,0.00039520554,0.003811924,0.00009724825,0.000583714,0.00014961342,0.00004239787,0.0000023100138,0.000048922724],"genre_scores_gemma":[0.9956431,0.000075160926,0.0038368644,0.00004032584,0.0003001555,0.0000030273395,0.000053289645,0.0000070716733,0.00004104195],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99686146,0.0020399617,0.0007688366,0.00012181503,0.00007077794,0.00013714617],"domain_scores_gemma":[0.9981077,0.00044613815,0.0010108023,0.00022493371,0.00015940587,0.00005102063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006351352,0.000109586246,0.00026537577,0.000036048674,0.000039191833,0.000012990172,0.00022137721,0.00017278311,0.00011497546],"category_scores_gemma":[0.0031710183,0.0000635692,0.00019800715,0.00008004526,0.00010484541,0.000008046737,0.000041353673,0.00011796507,0.0000023128493],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031724738,0.000102094724,0.0017792466,0.00001757342,0.000036801204,6.729915e-8,0.00003491075,0.000002045127,0.9760493,0.000028945708,0.00072042923,0.020911345],"study_design_scores_gemma":[0.00029426438,0.0008431716,0.011927447,0.000012770417,0.000040048104,0.0000164142,0.00001722751,0.0000028645395,0.98201203,0.00001735998,0.0047542825,0.00006209092],"about_ca_topic_score_codex":0.0000014193241,"about_ca_topic_score_gemma":1.2724463e-7,"teacher_disagreement_score":0.020849254,"about_ca_system_score_codex":0.000014799269,"about_ca_system_score_gemma":0.00001768668,"threshold_uncertainty_score":0.3796234},"labels":[],"label_agreement":null},{"id":"W2100259090","doi":"10.1177/0300985813511132","title":"Nonculture Molecular Techniques for Diagnosis of Bacterial Disease in Animals","year":2014,"lang":"en","type":"review","venue":"Veterinary Pathology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Polymerase chain reaction; Multiplex polymerase chain reaction; Medical diagnosis; Infectious disease (medical specialty); Computational biology; Disease; DNA sequencing; Molecular diagnostics; Multiplex; Medicine; Pathology; Bioinformatics; Gene; Genetics","score_opus":0.04949575559209259,"score_gpt":0.3597792350300113,"score_spread":0.31028347943791873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100259090","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.062415563,0.9343398,0.0003673263,0.00002081703,0.0004239471,0.0016995234,0.000645181,0.000032963046,0.000054872915],"genre_scores_gemma":[0.010918082,0.98153436,0.0030001157,0.000040346247,0.00037256742,0.001581866,0.0024173348,0.00007448275,0.00006086548],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979625,0.00042651055,0.00068744196,0.00063048454,0.000055521632,0.0002375893],"domain_scores_gemma":[0.9988233,0.00005697517,0.00037210959,0.0005861521,0.000085135776,0.000076338445],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003934349,0.00031119154,0.00097516854,0.0001299165,0.000027695765,0.000017976223,0.00032764443,0.0005103757,0.000028006882],"category_scores_gemma":[0.00049467245,0.00029233965,0.0004115988,0.000103188846,0.000099453246,0.0000029052248,0.00018895364,0.0001078143,0.000003569131],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038633845,0.0003827326,0.00028161798,0.025937377,0.000097354736,0.00015233477,0.00004270397,5.186055e-7,0.35030928,0.00022438804,0.00060618605,0.6215792],"study_design_scores_gemma":[0.0001810396,0.0008467132,0.00008235738,0.001134548,0.00012850566,0.000051115312,0.0000022044399,8.898568e-7,0.0014674563,0.00003377788,0.99576324,0.00030815435],"about_ca_topic_score_codex":0.0000033028941,"about_ca_topic_score_gemma":0.0000037719587,"teacher_disagreement_score":0.99515706,"about_ca_system_score_codex":0.000017483688,"about_ca_system_score_gemma":0.0001023706,"threshold_uncertainty_score":0.99995285},"labels":[],"label_agreement":null},{"id":"W2100271583","doi":"10.2460/javma.234.3.352","title":"Assessment of laboratory and biosafety practices associated with bacterial culture in veterinary clinics","year":2009,"lang":"en","type":"article","venue":"Journal of the American Veterinary Medical Association","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biosafety; Medicine; Microbiological culture; Veterinary medicine; Infection control; Population; Biosecurity; Environmental health; Pathology; Biology","score_opus":0.020561247591740862,"score_gpt":0.34776566163403644,"score_spread":0.32720441404229555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100271583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979662,0.000040965464,0.00002012043,0.0016334011,0.00019981133,0.00007340297,0.000013606768,0.000002985091,0.000049555678],"genre_scores_gemma":[0.9986285,0.00020408968,0.00058937614,0.00034881415,0.00018392985,0.0000010040458,0.000011364769,0.0000058313008,0.00002707031],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981388,0.00066804286,0.00051320903,0.00013247531,0.00042787558,0.00011961398],"domain_scores_gemma":[0.9965556,0.000126159,0.002834456,0.00013616767,0.00027886653,0.00006871091],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019511085,0.00009246608,0.00026683736,0.000035967743,0.000043322954,0.000022248645,0.00019254773,0.00011812812,0.000008435731],"category_scores_gemma":[0.0040971735,0.00006358615,0.00006320071,0.00020493074,0.00009160479,0.000022495124,0.000057452937,0.00026922548,1.2322263e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042767916,0.00033055618,0.09838803,0.000010873288,0.00008634206,0.000014511217,0.00010897896,0.0000039577853,0.89715165,0.000007762883,0.0001811985,0.0032884288],"study_design_scores_gemma":[0.0007876995,0.0038968225,0.9920529,0.00009060312,0.000030509858,0.00004753986,0.00015293375,0.000061191386,0.000837073,0.0000100971165,0.0019499819,0.000082654115],"about_ca_topic_score_codex":0.000007601291,"about_ca_topic_score_gemma":0.000008362657,"teacher_disagreement_score":0.8963146,"about_ca_system_score_codex":0.000095272844,"about_ca_system_score_gemma":0.00026369613,"threshold_uncertainty_score":0.4904995},"labels":[],"label_agreement":null},{"id":"W2101233911","doi":"10.1016/j.scitotenv.2006.04.033","title":"Quantitative mapping of chlorhexidine in natural river biofilms","year":2006,"lang":"en","type":"article","venue":"The Science of The Total Environment","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Brockhouse Institute for Materials Research; McMaster University","funders":"Basic Energy Sciences; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Environment Canada; Advanced Foods and Materials Network; Dow Chemical Company","keywords":"Biofilm; Bioaccumulation; Antimicrobial; Confocal laser scanning microscopy; Chlorhexidine; Biology; Bacteria; Confocal microscopy; Aquatic ecosystem; Chemistry; Microbiology; Botany; Environmental chemistry; Food science; Cell biology","score_opus":0.0131846654551968,"score_gpt":0.22803658878517807,"score_spread":0.21485192332998126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101233911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992488,0.00007626631,0.00001712393,0.00022544993,0.00009534891,0.000103478094,0.0000035209346,0.0000010827443,0.00022893476],"genre_scores_gemma":[0.99899995,0.0000055455776,0.00051362,0.000005230733,0.0000136384015,0.0000020423756,0.0000021361072,0.0000021646424,0.000455687],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99942553,0.000033487027,0.00015916217,0.00013892537,0.0001450797,0.000097822754],"domain_scores_gemma":[0.9995904,0.000010773149,0.00010448922,0.00027347569,0.000011486935,0.00000936973],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043099318,0.000047521346,0.000057267614,0.00002095087,0.000061425264,0.00000584572,0.0002837729,0.000016356125,0.000010999039],"category_scores_gemma":[0.000073644966,0.00002839421,0.00003846123,0.00012514301,0.0009210903,0.000005241188,0.00018576057,0.000036782436,0.0000026926207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009455669,0.000030061512,0.00032150056,0.0000026678877,0.0000017621483,2.7557205e-8,0.00009805215,0.001979963,0.9971666,0.00029681667,0.000008414029,0.000084677435],"study_design_scores_gemma":[0.00009032043,0.000028864737,0.26498422,0.000008249501,0.0000022526533,0.0000011876217,0.00013245984,0.00086686603,0.73366535,0.00016593818,0.000016317745,0.000037991165],"about_ca_topic_score_codex":0.00014620376,"about_ca_topic_score_gemma":0.0000042321176,"teacher_disagreement_score":0.2646627,"about_ca_system_score_codex":0.000017570395,"about_ca_system_score_gemma":0.000018694995,"threshold_uncertainty_score":0.33937958},"labels":[],"label_agreement":null},{"id":"W2106443705","doi":"10.1086/379825","title":"Adequacy of Early Empiric Antibiotic Treatment and Survival in Severe Sepsis: Experience from the MONARCS Trial","year":2004,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":273,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal University Hospital; McGill University","funders":"","keywords":"Medicine; Sepsis; Antibiotics; Antibiotic therapy; Internal medicine; Randomized controlled trial; Mortality rate; Intensive care medicine","score_opus":0.05804074479060642,"score_gpt":0.36888237616670155,"score_spread":0.3108416313760951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106443705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99884087,0.0003188668,0.000018686984,0.000116300886,0.00031696013,0.00028170986,0.000048189853,0.000014289803,0.000044149874],"genre_scores_gemma":[0.9993074,0.00024780683,0.000011989294,0.00010226155,0.00024306487,0.000013759819,0.00004722289,0.00000808181,0.00001844215],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988862,0.00020708637,0.0004044653,0.00032555766,0.00006166316,0.00011498192],"domain_scores_gemma":[0.99923545,0.00021711661,0.00011470211,0.0003079726,0.000042938096,0.00008179317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014176375,0.00010625153,0.00020323598,0.00001470319,0.000058223348,0.000034672215,0.0000972404,0.00009471891,0.000012774714],"category_scores_gemma":[0.00097587344,0.00007814349,0.00011755914,0.00008338503,0.00020907128,0.000007020309,0.00005952051,0.000055081004,0.0000035674402],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00077757303,0.00078115566,0.989957,0.0000051886764,0.000035476412,0.0000014740607,0.00017548745,0.000017860337,0.005167036,0.000019047386,0.000012471465,0.003050244],"study_design_scores_gemma":[0.009619357,0.0009789857,0.98774326,0.000022440674,0.000037766506,5.773034e-7,0.000161779,0.0000047493713,0.0008462402,0.00037486717,0.00010507928,0.00010490717],"about_ca_topic_score_codex":0.0006955109,"about_ca_topic_score_gemma":0.00055283826,"teacher_disagreement_score":0.008841785,"about_ca_system_score_codex":0.000017039943,"about_ca_system_score_gemma":0.0001050221,"threshold_uncertainty_score":0.3186599},"labels":[],"label_agreement":null},{"id":"W2108162380","doi":"10.1093/cid/ciu493","title":"The Opening and Closing of Empiric Windows: The Impact of Rapid Microbiologic Diagnostics","year":2014,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Medicine; Closing (real estate)","score_opus":0.04221599798476965,"score_gpt":0.3634461475673697,"score_spread":0.32123014958260004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108162380","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98863244,0.0029361646,0.00004838261,0.007239798,0.00046940875,0.000416371,0.00014656605,0.000016079677,0.00009479657],"genre_scores_gemma":[0.9815176,0.0020443592,0.0000070958595,0.01454555,0.0014916378,0.000016366284,0.00029000302,0.000024375959,0.00006299404],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9978521,0.0007506294,0.000757549,0.0003640272,0.000072626615,0.00020310337],"domain_scores_gemma":[0.9961687,0.0022773375,0.00067775894,0.00060257636,0.0002201465,0.00005352089],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067543786,0.0002069202,0.000404817,0.000024220739,0.00019479489,0.00007703643,0.000319662,0.00043443165,0.00001546438],"category_scores_gemma":[0.0066086226,0.00011463007,0.00045563537,0.000074227675,0.0008651472,0.0000029859348,0.00021270524,0.00041470933,0.0000025153167],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005823168,0.00019344641,0.4243681,0.00016307349,0.0004989115,0.0000027762703,0.000020188028,0.000032259057,0.016837416,0.000004205293,0.5495065,0.00831489],"study_design_scores_gemma":[0.0017965565,0.0037918158,0.78408194,0.0004069431,0.0009768441,0.000041052488,0.000048940547,0.00015009963,0.0025547296,0.00069526606,0.20452252,0.000933316],"about_ca_topic_score_codex":0.00005772871,"about_ca_topic_score_gemma":0.000009328483,"teacher_disagreement_score":0.3597138,"about_ca_system_score_codex":0.000010672967,"about_ca_system_score_gemma":0.00014246463,"threshold_uncertainty_score":0.7911616},"labels":[],"label_agreement":null},{"id":"W2111083295","doi":"10.1093/jac/dkq211","title":"Support for higher ciprofloxacin AUC24/MIC targets in treating Enterobacteriaceae bloodstream infection","year":2010,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; St. Boniface Hospital","funders":"Bayer Canada","keywords":"Ciprofloxacin; Pharmacodynamics; Medicine; Internal medicine; Context (archaeology); Pharmacokinetics; Confidence interval; Population; Antibiotics; Minimum inhibitory concentration; Blood culture; Gastroenterology; Pharmacology; Microbiology; Biology","score_opus":0.009258954846939128,"score_gpt":0.26953181447225893,"score_spread":0.2602728596253198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111083295","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99763596,0.000008354926,0.00047438574,0.00041108858,0.0011778395,0.0001868952,0.000011961307,0.0000079553565,0.00008553667],"genre_scores_gemma":[0.994235,0.000059139435,0.0041084243,0.00038604878,0.00068556034,0.0000035065991,0.000055819135,0.00002877867,0.0004377671],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989858,0.000029798193,0.0005210148,0.0002015031,0.00006388558,0.00019795162],"domain_scores_gemma":[0.99918395,0.000014956246,0.00038253053,0.00017296948,0.00018576274,0.00005981266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044531294,0.00014623652,0.00022532728,0.00010115206,0.0000542096,0.00006520436,0.00013469395,0.00017926226,0.00012775425],"category_scores_gemma":[0.00008813441,0.00013870427,0.00017621626,0.00007887016,0.000040107767,0.000019656836,0.000017702914,0.0001776178,0.000002500731],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028431418,0.00020954294,0.03216144,0.000022045326,0.000034274122,0.000001171012,0.00007105347,0.000003745679,0.96336,0.000005483309,0.001778947,0.0020679762],"study_design_scores_gemma":[0.0022628703,0.0002960982,0.06048026,0.000026381254,0.000014094169,0.000041645,0.0000067900983,0.000007076091,0.9041972,0.000018513392,0.03249671,0.00015237243],"about_ca_topic_score_codex":0.000026557542,"about_ca_topic_score_gemma":0.00012553028,"teacher_disagreement_score":0.059162814,"about_ca_system_score_codex":0.00001984563,"about_ca_system_score_gemma":0.00009371331,"threshold_uncertainty_score":0.5656196},"labels":[],"label_agreement":null},{"id":"W2112100901","doi":"10.1128/jcm.38.11.4266-4268.2000","title":"Quantitative Gram Stain Interpretation Criteria Used by Microbiology Laboratories in Alberta, Canada","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"College of Physicians and Surgeons of Ontario; University of Calgary","funders":"","keywords":"Grading (engineering); Clinical microbiology; Gram staining; External quality assessment; Medicine; Microbiological Techniques; Microbiology; Biology; Pathology; Ecology","score_opus":0.01973128328263478,"score_gpt":0.34875442599515,"score_spread":0.3290231427125152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112100901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997408,0.00021970144,0.00009478384,0.001134946,0.000855355,0.000097786695,0.000113321454,0.0000023756368,0.00007374363],"genre_scores_gemma":[0.9973175,0.00009467916,0.00073861185,0.00088099187,0.00015170712,0.000002126134,0.000274345,0.000012238528,0.0005278262],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99716634,0.0008593264,0.0014372015,0.00028161288,0.000026411066,0.00022909681],"domain_scores_gemma":[0.9985509,0.0003929683,0.00050658424,0.00018480548,0.00027761422,0.000087151355],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010105644,0.00014672712,0.0004788019,0.000041300424,0.000035353274,0.000023515233,0.000258437,0.00028719782,0.0002679024],"category_scores_gemma":[0.001873202,0.00013069253,0.00011305947,0.00010922835,0.00018767583,0.000011704454,0.00003305344,0.00028059835,0.000008634785],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007502539,0.00013549635,0.015259509,0.000008805674,0.00005906228,0.0000048688735,0.00011493587,0.0000079682,0.96851355,0.000022408405,0.013354277,0.0017688706],"study_design_scores_gemma":[0.0069873924,0.004863765,0.03430817,0.00016701203,0.000097187745,0.0004443078,0.0013166348,0.00012544049,0.13140166,0.00038228635,0.8188442,0.0010619436],"about_ca_topic_score_codex":0.020090267,"about_ca_topic_score_gemma":0.3297065,"teacher_disagreement_score":0.8371119,"about_ca_system_score_codex":0.00004021749,"about_ca_system_score_gemma":0.0006122685,"threshold_uncertainty_score":0.98643506},"labels":[],"label_agreement":null},{"id":"W2113338425","doi":"10.1039/c5lc00375j","title":"Rapid electrochemical phenotypic profiling of antibiotic-resistant bacteria","year":2015,"lang":"en","type":"article","venue":"Lab on a Chip","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto Public Health","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bacteria; Antibiotics; Antibiotic resistance; Microbiology; Antimicrobial; Biology; Drug resistance; Genetics","score_opus":0.027250844428475997,"score_gpt":0.26077468483276955,"score_spread":0.23352384040429355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113338425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971477,0.000099218545,0.00013718291,0.00008790411,0.00015343024,0.00012720417,0.000010744533,0.000020713049,0.0022159023],"genre_scores_gemma":[0.9962962,0.00000813318,0.0030186183,0.00012366552,0.00017298949,0.0000026323348,0.0001589431,0.000015563333,0.00020324126],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913865,0.000071434486,0.00023201908,0.0002766647,0.000108299886,0.00017293236],"domain_scores_gemma":[0.9993253,0.00001191657,0.0000969252,0.00035059842,0.00012092633,0.00009436231],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026477742,0.00010887513,0.00013949665,0.00002738986,0.000027248636,0.000022398428,0.00014981987,0.00010157938,0.000026635624],"category_scores_gemma":[0.00045550673,0.00010235729,0.00005408945,0.00008362275,0.00004883807,0.0000027837375,0.000035148674,0.00007136218,0.000018565306],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028889862,0.00009323245,0.0012676902,0.000023070752,0.000014713872,3.857802e-7,0.0000370864,4.5082402e-7,0.9970081,0.00046739398,0.00019731365,0.00060169917],"study_design_scores_gemma":[0.00043189028,0.0002807944,0.0052008415,0.000017066288,0.0000083030145,0.000002214436,0.000042016043,0.000019883651,0.991892,0.00009190988,0.0018988639,0.000114251874],"about_ca_topic_score_codex":0.0000069001317,"about_ca_topic_score_gemma":0.000007039108,"teacher_disagreement_score":0.0051160995,"about_ca_system_score_codex":0.000015239776,"about_ca_system_score_gemma":0.00008649887,"threshold_uncertainty_score":0.41740093},"labels":[],"label_agreement":null},{"id":"W2114802548","doi":"10.1155/2014/250694","title":"The <i>In Vitro</i> Susceptibility of Biofilm Forming Medical Device Related Pathogens to Conventional Antibiotics","year":2014,"lang":"en","type":"article","venue":"Dataset Papers in Science","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Microbiology; Biofilm; Staphylococcus epidermidis; Minimum bactericidal concentration; Staphylococcus aureus; Minimum inhibitory concentration; Gentamicin; Ciprofloxacin; Antimicrobial; Vancomycin; Antibiotics; Biology; Broth microdilution; Pseudomonas aeruginosa; Bacteria; Chemistry","score_opus":0.012576878712405338,"score_gpt":0.28784015969296234,"score_spread":0.275263280980557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114802548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982023,0.00001440502,0.00004315293,0.00034163604,0.00018113402,0.00013945981,0.0008039652,0.0000038468465,0.00027007473],"genre_scores_gemma":[0.9971089,0.000014473622,0.0008979221,0.0002753994,0.000017786928,0.0000012297147,0.001667677,0.0000034798386,0.0000131337765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985567,0.00011088692,0.00038573262,0.00039314965,0.00031424116,0.00023931413],"domain_scores_gemma":[0.999125,0.000094001254,0.00008164247,0.00053333264,0.000062556035,0.000103488805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0038092192,0.0000749699,0.00009884293,0.000051985087,0.0001245814,0.000032914733,0.0005878222,0.00007275934,0.00002130938],"category_scores_gemma":[0.0041925707,0.000060444407,0.00002551165,0.0004420057,0.00053152203,0.000009723188,0.0002458524,0.00008828599,0.0000066621333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024967261,0.000040018844,0.010193833,0.000008074443,0.0000011885681,5.6799325e-7,0.000024721056,0.0000070948363,0.98485404,0.00014073061,0.00018127091,0.00452349],"study_design_scores_gemma":[0.0009806046,0.00015942843,0.15328185,0.00008382251,0.000008172366,0.00001812021,0.00047809776,0.0033129852,0.7710223,0.00012867562,0.07015703,0.00036891477],"about_ca_topic_score_codex":0.00004828011,"about_ca_topic_score_gemma":0.0009083832,"teacher_disagreement_score":0.21383174,"about_ca_system_score_codex":0.000022634302,"about_ca_system_score_gemma":0.00015957357,"threshold_uncertainty_score":0.50192016},"labels":[],"label_agreement":null},{"id":"W2119387702","doi":"10.1177/104063870301500511","title":"16S Ribosomal RNA Sequence—Based Identification of Veterinary Clinical Bacteria","year":2003,"lang":"en","type":"article","venue":"Journal of Veterinary Diagnostic Investigation","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"16S ribosomal RNA; Biology; Ribosomal RNA; Gene; Genetics; DNA sequencing; Sequence analysis; Computational biology","score_opus":0.08983840343894077,"score_gpt":0.3518112302235086,"score_spread":0.2619728267845678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119387702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99666584,0.00010201002,0.0016212849,0.000149654,0.0011913578,0.00018446463,0.000021786866,0.0000087889675,0.000054795368],"genre_scores_gemma":[0.99334174,0.000078138335,0.0059767086,0.00014488284,0.00029090338,0.000008553002,0.000099648474,0.000021405342,0.000037995163],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99691725,0.0007429165,0.0016534481,0.00027378183,0.00023827783,0.00017430971],"domain_scores_gemma":[0.9971654,0.00034181806,0.0014148421,0.0003767726,0.00053883984,0.00016236045],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0020447809,0.00016924128,0.00028976615,0.00011695012,0.000082335966,0.00005329114,0.00024023125,0.00019024743,0.000058017147],"category_scores_gemma":[0.008689161,0.00017260398,0.0001991015,0.0001568529,0.00024681754,0.00004426034,0.000037930684,0.00016692225,0.000010411049],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001304228,0.00015116762,0.01840168,0.00007253516,0.00003290994,0.000019174879,0.000047486756,0.000066941866,0.9796019,0.0000887518,0.00025569508,0.0011313162],"study_design_scores_gemma":[0.0015960285,0.0046550753,0.33848947,0.0002756927,0.00011254346,0.0004630956,0.00010577096,0.00025043593,0.648906,0.0006471358,0.0041383514,0.0003604173],"about_ca_topic_score_codex":0.0000053654785,"about_ca_topic_score_gemma":0.0000010086017,"teacher_disagreement_score":0.33069593,"about_ca_system_score_codex":0.000037419733,"about_ca_system_score_gemma":0.00033468896,"threshold_uncertainty_score":0.9996611},"labels":[],"label_agreement":null},{"id":"W2119903906","doi":"10.1016/s0732-8893(00)00199-1","title":"Four-day incubation for detection of bacteremia using the BACTEC 9240","year":2000,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Dalhousie University","funders":"","keywords":"Bacteremia; Vial; Incubation; Blood culture; Medicine; Incubation period; Microbiology; Biology; Antibiotics; Chromatography; Chemistry","score_opus":0.011321667987194202,"score_gpt":0.23792593533428288,"score_spread":0.2266042673470887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119903906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958559,0.00021919518,0.0032158915,0.00004401544,0.00017523214,0.00035424557,0.00008218377,0.000012771947,0.000040545765],"genre_scores_gemma":[0.9992389,0.00010208964,0.000037321395,0.00015835214,0.00013596792,0.000034611196,0.00022008287,0.000009807126,0.000062832885],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99929136,0.00013438334,0.00019941287,0.00023053917,0.000015944212,0.0001283372],"domain_scores_gemma":[0.99935937,0.00021840024,0.00008549151,0.00019271397,0.00009149843,0.000052533214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022668985,0.00009979985,0.000101891266,0.00002603975,0.00018251798,0.00001876207,0.00006207253,0.00010538426,0.00007504545],"category_scores_gemma":[0.0011090309,0.00008280055,0.00006452716,0.000052671694,0.00013544483,0.00000679749,0.000022733404,0.000048678135,0.0000027549754],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008438026,0.00005347032,0.028006561,0.000031174066,0.000025938527,2.179761e-7,0.00003982714,0.000046763882,0.963627,0.000026310496,0.00005999592,0.0079984],"study_design_scores_gemma":[0.002877129,0.00084902934,0.5675719,0.000096866184,0.0004884612,0.00011581584,0.00009538188,0.001159293,0.40252712,0.0018410742,0.021596363,0.000781566],"about_ca_topic_score_codex":0.000021740918,"about_ca_topic_score_gemma":0.000060529284,"teacher_disagreement_score":0.5610998,"about_ca_system_score_codex":0.000011082673,"about_ca_system_score_gemma":0.00003822172,"threshold_uncertainty_score":0.33765087},"labels":[],"label_agreement":null},{"id":"W2120081470","doi":"10.1071/ma13057","title":"Nanoparticle sample preparation and mass spectrometry for rapid diagnosis of microbial infections","year":2013,"lang":"en","type":"article","venue":"Microbiology Australia","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carbon Engineering (Canada)","funders":"","keywords":"Mass spectrometry; Complex matrix; Biomarker; Sample preparation; Biomarker discovery; Ex vivo; Bacteria; Computational biology; Proteomics; In vivo; Pathogen; Chemistry; Nanotechnology; In vitro; Chromatography; Microbiology; Biology; Materials science; Biotechnology; Biochemistry","score_opus":0.023948134397337926,"score_gpt":0.28513934659746765,"score_spread":0.2611912122001297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120081470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99789083,0.00004109918,0.0012254443,0.00015006424,0.00016714385,0.00038041148,0.00012711006,0.000010195304,0.000007707988],"genre_scores_gemma":[0.99332213,0.00001668887,0.005818007,0.0000400276,0.00007344342,0.000100986035,0.0003388624,0.0000069075813,0.0002829391],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932456,0.000053907093,0.00021892275,0.00023691576,0.000010635311,0.00015503506],"domain_scores_gemma":[0.99957174,0.000047742087,0.00008489471,0.00016380263,0.00009753557,0.000034274657],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012536513,0.00008414947,0.00011328049,0.000035902918,0.000065626686,0.000021433658,0.00006193616,0.00013088188,0.00028026933],"category_scores_gemma":[0.00021738018,0.00008570473,0.000051138642,0.000057279947,0.0001123985,0.00000745819,0.000028220875,0.00003422657,0.000014153129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018792012,0.000056721758,0.052251015,0.000018239869,0.000025367372,1.8622842e-8,0.00002356545,0.0000027156218,0.9435992,0.000034412875,0.00386969,0.00010023971],"study_design_scores_gemma":[0.00033615128,0.00033554458,0.01665349,0.0000041798858,0.000017183162,0.00000743041,0.000019756535,0.000010296099,0.9769979,0.00015683693,0.0053661023,0.00009514647],"about_ca_topic_score_codex":0.00012730176,"about_ca_topic_score_gemma":0.00006366021,"teacher_disagreement_score":0.03559753,"about_ca_system_score_codex":0.000008041349,"about_ca_system_score_gemma":0.000014289968,"threshold_uncertainty_score":0.3494937},"labels":[],"label_agreement":null},{"id":"W2120711767","doi":"10.1128/jcm.40.7.2686-2688.2002","title":"Laboratory Contamination of Specimens with Quality Control Strains of Vancomycin-Resistant Enterococci in Ontario","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Contamination; Enterococcus faecalis; Enterococcus; Microbiology; Vancomycin; Typing; Vancomycin-Resistant Enterococci; Biology; Bacteria; Antibiotics; Staphylococcus aureus; Ecology","score_opus":0.05009149217352048,"score_gpt":0.32859069306008637,"score_spread":0.2784992008865659,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120711767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990404,0.000087647684,0.00024292187,0.00012669705,0.00023686716,0.00010230903,0.00004081669,0.0000010738873,0.00012121722],"genre_scores_gemma":[0.99904656,0.000024016708,0.00061852415,0.00010484388,0.00007435227,6.6208173e-7,0.0000128454285,0.000005340908,0.00011284542],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99758387,0.00046934158,0.001632358,0.00015734976,0.000045138735,0.00011196663],"domain_scores_gemma":[0.9977771,0.00017369735,0.0013346137,0.00018534818,0.0004798779,0.00004937919],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001444016,0.00008817535,0.00052390224,0.000054744753,0.000011267545,0.000004085117,0.00014957997,0.00017538424,0.00012884125],"category_scores_gemma":[0.000758313,0.00007049721,0.0001341931,0.000054055254,0.00018843196,0.000006503449,0.000020054638,0.00021664122,0.0000010230416],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050663337,0.00036605966,0.21669458,0.0000144577025,0.000062033425,0.0000021264466,0.00007383647,0.0000049836317,0.7818791,0.000026907708,0.000115402356,0.0002538323],"study_design_scores_gemma":[0.004564701,0.0019859327,0.94346756,0.00006990096,0.0000339874,0.00001562614,0.00012387917,0.0000031242078,0.04518735,0.000018319728,0.0044284,0.00010120914],"about_ca_topic_score_codex":0.00022279462,"about_ca_topic_score_gemma":0.023604637,"teacher_disagreement_score":0.7366918,"about_ca_system_score_codex":0.000027391265,"about_ca_system_score_gemma":0.0001469531,"threshold_uncertainty_score":0.99421203},"labels":[],"label_agreement":null},{"id":"W2121449672","doi":"10.1086/381029","title":"Acceptable Rates of Treatment Failure in Osteomyelitis Involving the Diabetic Foot: A Survey of Infectious Diseases Consultants","year":2004,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention","keywords":"Medicine; Osteomyelitis; Diabetic foot; Failure rate; Intensive care medicine; Antimicrobial; Antibiotic resistance; Antibiotics; Surgery; Diabetes mellitus","score_opus":0.041619602270060306,"score_gpt":0.34209456725545595,"score_spread":0.30047496498539567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121449672","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99807894,0.0007526957,0.00003012561,0.00006640633,0.00023700237,0.00041908448,0.000341295,0.000020408648,0.000054025346],"genre_scores_gemma":[0.9989739,0.00046217625,0.000007795003,0.000053913478,0.00012257892,0.000052841602,0.00028120785,0.000018512037,0.000027061667],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979272,0.0005170915,0.0008306546,0.00039911218,0.00009733067,0.00022860622],"domain_scores_gemma":[0.9979898,0.0006338823,0.00033611764,0.0005043497,0.0004004976,0.00013536145],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037661556,0.00018830811,0.00043122013,0.000057974,0.0000914121,0.00004266199,0.00017121714,0.0001373347,0.000059204915],"category_scores_gemma":[0.00773459,0.00014668531,0.00019019596,0.00037661963,0.00041627785,0.0000135699,0.00010331237,0.000084910505,0.0000066524217],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051061972,0.0007042858,0.9860817,0.00004536869,0.00008756047,0.0000012486494,0.000046626294,0.00018661164,0.009905526,0.00002691216,0.00003784673,0.0028252515],"study_design_scores_gemma":[0.0019790537,0.00075616303,0.99313724,0.00006163234,0.00008093507,0.0000014514563,0.000084809966,0.000018110195,0.0032388014,0.0003911098,0.000099180485,0.00015151767],"about_ca_topic_score_codex":0.001448056,"about_ca_topic_score_gemma":0.010964674,"teacher_disagreement_score":0.009516618,"about_ca_system_score_codex":0.00006141667,"about_ca_system_score_gemma":0.00045744012,"threshold_uncertainty_score":0.9259586},"labels":[],"label_agreement":null},{"id":"W2123091708","doi":"10.1016/j.ijid.2005.04.010","title":"Frequency of isolation of pathogens from nosocomial bloodstream infection in a tertiary referral hospital in the United Arab Emirates","year":2006,"lang":"en","type":"letter","venue":"International Journal of Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Bacteremia; Referral; Blood culture; Clinical microbiology; Isolation (microbiology); Infection control; Antimicrobial; Internal medicine; Scopus; Bloodstream infection; Emergency medicine; Intensive care medicine; MEDLINE; Microbiology; Family medicine; Antibiotics; Biology","score_opus":0.009387526848334606,"score_gpt":0.25536884045586944,"score_spread":0.24598131360753483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123091708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949162,0.00012468017,0.00010857855,0.0035662162,0.00075017835,0.00015639715,0.0003186831,0.0000043068526,0.00005475077],"genre_scores_gemma":[0.9939899,0.00007315278,0.00005305092,0.0025793181,0.001420055,0.000009279998,0.0018515426,0.000015808062,0.000007919285],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981572,0.00029788283,0.0009223258,0.00018940386,0.00032050657,0.00011264911],"domain_scores_gemma":[0.9980054,0.00011823306,0.0010592571,0.00018427047,0.00061255717,0.000020284388],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019870848,0.00017085376,0.00025144688,0.00043677908,0.0000186435,0.00004429351,0.0003056121,0.0002929931,0.000027140464],"category_scores_gemma":[0.0004699785,0.00014528759,0.00023458835,0.00016330967,0.00008060558,0.000024642917,0.000040546096,0.0003988681,7.512331e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004288766,0.00053001015,0.92367864,0.000028780121,0.0001343189,0.000043084056,0.00010455573,0.00015970516,0.06796703,0.000004938077,0.0071344413,0.00017163384],"study_design_scores_gemma":[0.0011160766,0.00023843952,0.9928429,0.00024868557,0.00009020056,0.000027401278,0.000030283618,0.000035689245,0.0036972384,0.00091159256,0.0005899077,0.00017154335],"about_ca_topic_score_codex":0.0033388797,"about_ca_topic_score_gemma":0.00079102156,"teacher_disagreement_score":0.06916432,"about_ca_system_score_codex":0.000076568445,"about_ca_system_score_gemma":0.00016855408,"threshold_uncertainty_score":0.5924656},"labels":[],"label_agreement":null},{"id":"W2125691583","doi":"10.1128/jcm.01666-07","title":"Detection of Pathogenic Protozoa in the Diagnostic Laboratory: Result Reproducibility, Specimen Pooling, and Competency Assessment","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; Montreal General Hospital","funders":"","keywords":"Concordance; Biology; Parasitology; Reproducibility; Protozoa; Entamoeba histolytica; Quality assurance; Medicine; Pathology; Microbiology; External quality assessment; Bioinformatics; Statistics; Mathematics","score_opus":0.04289045232575167,"score_gpt":0.3546787965468063,"score_spread":0.3117883442210546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125691583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985572,0.00028937825,0.000077614095,0.0004855194,0.00027878815,0.00026953238,0.000011877476,0.0000017516463,0.000028313065],"genre_scores_gemma":[0.9981732,0.00041344715,0.00086377666,0.000193094,0.00032360732,0.00000467739,0.000010435466,0.0000053761655,0.000012394907],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9972626,0.00097483926,0.0012632066,0.00033852216,0.00004737097,0.000113454524],"domain_scores_gemma":[0.9980016,0.0004584175,0.00072140904,0.00046177866,0.00031713923,0.00003965215],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0052468874,0.000083152554,0.00030668956,0.00004107155,0.000045989163,0.000007793584,0.00020174614,0.00016133816,0.0000069072807],"category_scores_gemma":[0.00877822,0.0000582953,0.00010955063,0.00009366765,0.0002557464,0.0000059155427,0.00006270686,0.0002809986,9.057739e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011343218,0.00020872797,0.18570581,0.000011323295,0.000018621955,0.0000053008143,0.00005175816,0.0000015813821,0.81313145,0.000008398289,0.00010270964,0.00064091233],"study_design_scores_gemma":[0.0010050791,0.0011633597,0.9501902,0.00002608373,0.000021792579,0.00029844965,0.00007854955,0.0000041150415,0.04214663,0.000115603056,0.004869272,0.00008089393],"about_ca_topic_score_codex":0.0000092306345,"about_ca_topic_score_gemma":0.00005666964,"teacher_disagreement_score":0.77098477,"about_ca_system_score_codex":0.000009846866,"about_ca_system_score_gemma":0.00021364489,"threshold_uncertainty_score":0.99957126},"labels":[],"label_agreement":null},{"id":"W2126783375","doi":"10.1128/jcm.02773-13","title":"Effect of the Initial Specimen Diversion Technique on Blood Culture Contamination Rates","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Capital District Health Authority; Dalhousie University","funders":"","keywords":"Contamination; Blood culture; Microbiology; Biology; Antibiotics; Ecology","score_opus":0.018992186843278244,"score_gpt":0.3580883075129385,"score_spread":0.3390961206696603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126783375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998563,0.000023056984,0.00019044492,0.00017010284,0.0006533138,0.00013435735,0.0000067041483,0.0000019450329,0.00025707053],"genre_scores_gemma":[0.99901307,0.000024601499,0.00017568262,0.00018275784,0.0004611566,0.0000010322079,0.00001606828,0.000004589244,0.00012104005],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981048,0.0010434436,0.00061180134,0.00012930186,0.000034416713,0.00007624464],"domain_scores_gemma":[0.99864805,0.0002831142,0.00066204515,0.00017707868,0.00019794173,0.000031744272],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020871458,0.000078174526,0.0002605407,0.000022814345,0.000040667244,0.0000068896056,0.0002195868,0.00024989253,0.000019649686],"category_scores_gemma":[0.0031230592,0.000045204273,0.00022349537,0.0000389485,0.0001409672,0.000003078114,0.00007167138,0.00021460908,0.000002992756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035450124,0.00009163215,0.011284277,0.000011989225,0.00003594675,3.1556092e-7,0.000009157114,0.0000012221385,0.98491937,0.000027894372,0.00074737996,0.0025162932],"study_design_scores_gemma":[0.0012149237,0.004723857,0.0127198445,0.000045934703,0.0000556372,0.000048736438,0.000006025338,0.0000015374724,0.9711005,0.000035903555,0.009994151,0.000052967785],"about_ca_topic_score_codex":0.0000014251906,"about_ca_topic_score_gemma":0.0000024852534,"teacher_disagreement_score":0.013818909,"about_ca_system_score_codex":0.000004827356,"about_ca_system_score_gemma":0.000030768497,"threshold_uncertainty_score":0.3738819},"labels":[],"label_agreement":null},{"id":"W2127338590","doi":"10.1128/jcm.00308-11","title":"Clostridium clostridioforme and Atopobium minutum Clinical Isolates with VanB-Type Resistance in France","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Microbiology; Biology; Vancomycin; Clostridium; Clostridium difficile; Virology; Bacteria; Antibiotics; Genetics; Staphylococcus aureus","score_opus":0.0528476251062742,"score_gpt":0.33303113184220884,"score_spread":0.2801835067359346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127338590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99743474,0.00080896553,0.00008289411,0.00028581594,0.0009903401,0.000109920846,0.000008606642,0.00000433257,0.00027437648],"genre_scores_gemma":[0.9914898,0.0007759827,0.0063759983,0.00038970934,0.0004991036,9.3786264e-7,0.000013849541,0.000014711265,0.00043990038],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972405,0.00041244947,0.0017146248,0.00035769132,0.000033191696,0.0002415618],"domain_scores_gemma":[0.99816424,0.00021077794,0.0008699725,0.0002777836,0.00034064174,0.00013661549],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020143327,0.00015355658,0.00056316325,0.000054808883,0.000037182377,0.000014500898,0.0002575011,0.00040932844,0.000040620085],"category_scores_gemma":[0.0016051588,0.00011795121,0.00015283475,0.000114206974,0.00041295923,0.0000130096805,0.000082049104,0.00046968032,0.0000075665985],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027617,0.00040446848,0.6975542,0.000028325878,0.000106798194,0.000021850843,0.00006759516,2.3018144e-7,0.29521203,0.000049339185,0.0024985492,0.0012949307],"study_design_scores_gemma":[0.0062023727,0.0072670295,0.7924336,0.00021451214,0.00009847182,0.00049060455,0.00014845042,0.000004622231,0.040453337,0.0006418876,0.15147853,0.00056653196],"about_ca_topic_score_codex":0.000007637705,"about_ca_topic_score_gemma":0.0001434393,"teacher_disagreement_score":0.2547587,"about_ca_system_score_codex":0.0000072032976,"about_ca_system_score_gemma":0.00021830449,"threshold_uncertainty_score":0.4809911},"labels":[],"label_agreement":null},{"id":"W2128302499","doi":"10.12927/hcq..17661","title":"Implementing a Policy for Practitioners Infected with Blood-Borne Pathogens","year":2005,"lang":"en","type":"article","venue":"Healthcare Quarterly","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Best practice; Autonomy; Infection control; Policy development; Health care; Healthcare policy; Medicine; Health policy; Nursing; Public relations; Family medicine; Business; Political science; Intensive care medicine; Public health; Public administration; Health care reform","score_opus":0.016580875584234878,"score_gpt":0.31535535525151437,"score_spread":0.2987744796672795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128302499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870225,0.00006330777,0.002590175,0.009245756,0.00006245142,0.00059046276,0.00011442756,0.00006144536,0.00024944288],"genre_scores_gemma":[0.98922867,0.000007927218,0.008111246,0.00079553,0.0008771042,0.00011205727,0.000632985,0.000025160312,0.00020930413],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987962,0.00007498928,0.0003073445,0.00034360486,0.0000838027,0.0003940329],"domain_scores_gemma":[0.99911743,0.000020948291,0.00016703291,0.00030224092,0.00027376838,0.00011859482],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030905814,0.00012403083,0.00011353931,0.000059630573,0.00022245519,0.00005940646,0.00007943532,0.00008864046,0.000017246859],"category_scores_gemma":[0.000108537344,0.00012041959,0.00005532218,0.00012570435,0.000026515043,0.000011026231,0.000011921897,0.00006344026,0.000007790046],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014472034,0.00018198346,0.005833561,0.00014656314,0.0000688803,0.000001637169,0.0008698511,0.0000031270251,0.89417297,0.0022155144,0.0005693287,0.09579188],"study_design_scores_gemma":[0.011013428,0.016152274,0.1487561,0.00023500847,0.00027711864,0.0005875795,0.005613756,0.00045242123,0.13564624,0.00089540816,0.67799246,0.0023782246],"about_ca_topic_score_codex":0.00030912066,"about_ca_topic_score_gemma":0.0028768673,"teacher_disagreement_score":0.75852674,"about_ca_system_score_codex":0.000027170538,"about_ca_system_score_gemma":0.00029673552,"threshold_uncertainty_score":0.49105683},"labels":[],"label_agreement":null},{"id":"W2129140316","doi":"10.1016/s0732-8893(99)00112-1","title":"Assessment of the FAN anaerobic bottle for culture of continuous ambulatory peritoneal dialysis fluid using the BacT/Alert system","year":2000,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Boniface Hospital; University of Manitoba","funders":"","keywords":"Continuous ambulatory peritoneal dialysis; Anaerobic exercise; Subculture (biology); Microbiology; Peritoneal dialysis; Bottle; Medicine; Pseudomonas aeruginosa; Effluent; Biology; Internal medicine; Bacteria; Physiology; Waste management","score_opus":0.0064749150317794995,"score_gpt":0.24448861952188444,"score_spread":0.23801370449010495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129140316","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99817747,0.0005823764,0.00023330403,0.000030134137,0.00020622127,0.00044659857,0.00023261218,0.000008612797,0.00008266571],"genre_scores_gemma":[0.99940586,0.00008088992,0.000066994995,0.00010105576,0.00008693626,0.000033269065,0.00014575884,0.0000092439295,0.00006998269],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991311,0.00019106634,0.00027461429,0.00023951069,0.000027914015,0.00013578804],"domain_scores_gemma":[0.9992408,0.00012063779,0.0001422958,0.0003288961,0.0001173683,0.00005000339],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019573323,0.000117952375,0.00019301561,0.000017092932,0.00020159272,0.000014997014,0.00012742562,0.00010752877,0.000033832806],"category_scores_gemma":[0.00034624976,0.0000772931,0.00014799129,0.00006650579,0.00027577972,0.000004236757,0.00004684683,0.000056807545,4.4487828e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032855645,0.000100411955,0.1031225,0.00009949216,0.000080069236,2.8422414e-7,0.000079239406,0.000098013414,0.89576304,0.000117171054,0.00023920732,0.00026772168],"study_design_scores_gemma":[0.0023623984,0.0005708809,0.8397446,0.00024967594,0.0010651083,0.00007690862,0.00072947866,0.0009631132,0.1463893,0.000060987735,0.0072121047,0.00057538337],"about_ca_topic_score_codex":0.00005854177,"about_ca_topic_score_gemma":0.00003403216,"teacher_disagreement_score":0.74937373,"about_ca_system_score_codex":0.000016895332,"about_ca_system_score_gemma":0.00009072043,"threshold_uncertainty_score":0.3151921},"labels":[],"label_agreement":null},{"id":"W2129301789","doi":"10.1099/jmm.0.05452-0","title":"Molecular characterization of imipenem-resistant, cfiA-positive Bacteroides fragilis isolates from the USA, Hungary and Kuwait","year":2004,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Bureau of Land Management; National Research Foundation; Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Imipenem; Microbiology; Biology; Genotype; Carbapenem; Gene; Antibiotic resistance; Antibiotics; Genetics","score_opus":0.007788641830173032,"score_gpt":0.23867431274644882,"score_spread":0.2308856709162758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129301789","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99497706,0.00045347703,0.001401696,0.002781332,0.00023104838,0.00007480958,0.00006787344,0.0000018548795,0.000010828768],"genre_scores_gemma":[0.9981025,0.00033732058,0.00035376064,0.00082474714,0.0002046018,9.595441e-7,0.00015609276,0.000008684912,0.000011351943],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989082,0.00019425237,0.0005070835,0.00017370151,0.000087712615,0.0001290535],"domain_scores_gemma":[0.9990933,0.00008160844,0.0003858283,0.0001613341,0.00018836702,0.00008959587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051816343,0.000108142325,0.0002281854,0.0000309682,0.000054763357,0.000022013865,0.0002877966,0.0002434752,0.00010253897],"category_scores_gemma":[0.00062280986,0.000075791904,0.00008838223,0.00005277395,0.00026609423,0.000008969252,0.00010646265,0.00019226501,0.0000023518396],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012453792,0.00005919499,0.0029066294,0.0000076173887,0.000079375444,0.0000063622174,0.000108031585,9.64168e-7,0.9953388,0.00005118951,0.000043349446,0.0012739635],"study_design_scores_gemma":[0.0009945875,0.0003840269,0.12652391,0.00012632279,0.000051031697,0.00018239029,0.000072958064,0.000005378155,0.8697039,0.00016016419,0.0016800883,0.00011526377],"about_ca_topic_score_codex":0.00012272813,"about_ca_topic_score_gemma":0.00009875335,"teacher_disagreement_score":0.12563491,"about_ca_system_score_codex":0.000013330396,"about_ca_system_score_gemma":0.00011800772,"threshold_uncertainty_score":0.30907044},"labels":[],"label_agreement":null},{"id":"W2130000431","doi":"10.1007/s10096-014-2235-3","title":"Evaluation of two chromogenic media for the isolation and identification of urinary tract pathogens","year":2014,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia Hospital","funders":"","keywords":"Chromogenic; Microbiology; Urinary system; Agar; Isolation (microbiology); Escherichia coli; Enterococcus; Urine; Biology; Medicine; Chemistry; Chromatography; Bacteria; Internal medicine","score_opus":0.04279706777121021,"score_gpt":0.34765683567078076,"score_spread":0.30485976789957053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130000431","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933439,0.0008209478,0.0049915845,0.000059224258,0.0005069117,0.00018963765,0.000054441865,0.0000033640451,0.000030004137],"genre_scores_gemma":[0.999147,0.0001652124,0.00011806123,0.0000425212,0.00044743685,0.0000022482886,0.00006135815,0.000010903827,0.000005258788],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99671865,0.0018449213,0.0011274244,0.00016579348,0.000067107794,0.000076124146],"domain_scores_gemma":[0.99693245,0.00058733544,0.0012599763,0.00021449046,0.0009559169,0.00004984281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0072456845,0.00008033765,0.00022135326,0.000041887386,0.000062009094,0.000011654856,0.00013734712,0.000046980054,0.000012451056],"category_scores_gemma":[0.0076136617,0.00006023821,0.0002233636,0.00004565929,0.00022545479,0.000009049778,0.000037387257,0.000076181044,0.0000012221677],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011641038,0.0003664221,0.049265496,0.000019698004,0.000115655814,1.8606796e-7,0.000038338956,0.000113210925,0.9201712,0.00001923373,0.00008033184,0.0296938],"study_design_scores_gemma":[0.0030095568,0.0017866899,0.97475684,0.000036276906,0.0010124287,0.00012695615,0.000043021293,0.00070662826,0.017123407,0.00029668343,0.0009836486,0.00011786593],"about_ca_topic_score_codex":9.941685e-7,"about_ca_topic_score_gemma":0.000003667463,"teacher_disagreement_score":0.92549133,"about_ca_system_score_codex":0.0000062939503,"about_ca_system_score_gemma":0.00009141792,"threshold_uncertainty_score":0.9114814},"labels":[],"label_agreement":null},{"id":"W2130539218","doi":"10.1016/j.ijid.2014.03.1186","title":"Comparison of direct identification of bacteria from VersaTrek Blood culture bottles using a seven present saponin extraction method and SepsiTyper by the Bruker MALDI-TOF","year":2014,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre","funders":"","keywords":"Blood culture; Gram staining; Microbiology; Bacteremia; Gram-positive bacteria; Enterococcus; Bacteria; Gram-negative bacteria; Biology; Gram; Antibiotics; Medicine; Escherichia coli","score_opus":0.014050222399029562,"score_gpt":0.33955565163904694,"score_spread":0.32550542924001735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130539218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938404,0.00040877366,0.005070966,0.000078104444,0.00037795558,0.000064263324,0.00011728224,0.0000037194538,0.00003855085],"genre_scores_gemma":[0.9991118,0.000047525446,0.00043927514,0.000018734176,0.00025297495,0.000001417272,0.00008412749,0.000007364021,0.00003682703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989465,0.00021664648,0.00045937262,0.00012983686,0.00019273646,0.000054891243],"domain_scores_gemma":[0.99854046,0.000094270865,0.00072560046,0.00012286328,0.00047623023,0.00004058923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026241833,0.000081793456,0.00016025177,0.000046154877,0.0000443274,0.00005562225,0.00014706355,0.000057913596,0.000028621076],"category_scores_gemma":[0.00044625378,0.000064448235,0.000099147415,0.00003892603,0.00006257524,0.00002639772,0.00004465373,0.00006364791,3.823509e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009849226,0.00023160323,0.122190624,0.000010635297,0.00023590116,2.456431e-7,0.00018929955,0.0002669612,0.87507117,0.000008796755,0.00033734652,0.0013589236],"study_design_scores_gemma":[0.00080419774,0.00017137657,0.33287632,0.00006379839,0.00031633017,0.000039711304,0.0002475368,0.0012951627,0.6624573,0.00020310962,0.0014104448,0.00011470485],"about_ca_topic_score_codex":0.000163422,"about_ca_topic_score_gemma":0.000026729906,"teacher_disagreement_score":0.21261385,"about_ca_system_score_codex":0.000017621669,"about_ca_system_score_gemma":0.000037757633,"threshold_uncertainty_score":0.2628123},"labels":[],"label_agreement":null},{"id":"W2133210748","doi":"10.5539/mas.v3n5p51","title":"Performance of CHROM Agar and Oxacillin Resistant Screening Agar Base Media for Detection of Methicillin Resistant Staphylococcus aureus (MRSA) from Chronic Wound","year":2009,"lang":"en","type":"article","venue":"Modern Applied Science","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Agar; Staphylococcus aureus; Microbiology; Methicillin-resistant Staphylococcus aureus; Ciprofloxacin; Agar plate; Medicine; Biology; Antibiotics; Bacteria","score_opus":0.022648616360352675,"score_gpt":0.2524470997371911,"score_spread":0.22979848337683842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133210748","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9510049,0.00029625787,0.048136994,0.000036782723,0.00005348892,0.00031240942,0.00007778787,0.000012655766,0.00006872129],"genre_scores_gemma":[0.99232644,0.000044604018,0.007437112,0.00003386764,0.0000790805,0.000014412263,0.0000411108,0.000009295923,0.000014066462],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99850106,0.000029088253,0.00039291225,0.00055544206,0.00027859226,0.0002429165],"domain_scores_gemma":[0.99894625,0.00005711598,0.00024250697,0.00044530907,0.00022037706,0.00008842852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010538455,0.00013786483,0.0002057231,0.00008379033,0.0002096854,0.000040070317,0.00027857278,0.00011549034,0.0000039760607],"category_scores_gemma":[0.00027070046,0.00013497303,0.000046500016,0.00021216896,0.00040219392,0.000015127128,0.00006505375,0.00008666473,4.1946248e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028589874,0.000028911923,0.00006121182,0.000037112346,0.0000071849154,9.746685e-8,0.00020398025,0.0001496209,0.98644173,0.00004376784,0.0000029810124,0.012737479],"study_design_scores_gemma":[0.00044927435,0.00027141022,0.01602451,0.000031583753,0.000017836262,7.307142e-8,0.00007374714,0.031000094,0.95152307,0.00035570457,0.00010751475,0.00014521553],"about_ca_topic_score_codex":0.00004882473,"about_ca_topic_score_gemma":0.0002092498,"teacher_disagreement_score":0.04132155,"about_ca_system_score_codex":0.00004195237,"about_ca_system_score_gemma":0.00017759496,"threshold_uncertainty_score":0.5504041},"labels":[],"label_agreement":null},{"id":"W2133328739","doi":"10.1017/s0950268809990100","title":"Surveillance for antimicrobial resistant organisms: potential sources and magnitude of bias","year":2009,"lang":"en","type":"review","venue":"Epidemiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; Health Sciences Centre; University of Calgary","funders":"","keywords":"Magnitude (astronomy); Sampling bias; Antimicrobial drug; Sampling (signal processing); Organism; Selection bias; Antimicrobial; Statistics; Biology; Computer science; Sample size determination; Mathematics; Microbiology","score_opus":0.06502446814438477,"score_gpt":0.34153076670987076,"score_spread":0.276506298565486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133328739","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.063523784,0.93380445,0.0015184289,0.00007965456,0.00037678544,0.0005479242,0.00009035915,0.000019540243,0.000039101094],"genre_scores_gemma":[0.009707302,0.9884625,0.0007675426,0.00007469554,0.00030912572,0.000014823154,0.0005371603,0.000015463047,0.00011136218],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99817604,0.0006126499,0.0006056942,0.00042203537,0.000020042273,0.00016352558],"domain_scores_gemma":[0.9989653,0.00022533038,0.00049147976,0.00018374552,0.00009062224,0.000043474483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015408292,0.0001912289,0.00082032196,0.0000622867,0.00011529236,0.000011754588,0.000053842723,0.000475684,0.0000061031096],"category_scores_gemma":[0.0025475877,0.00016604167,0.00016101907,0.00005272285,0.0001536265,0.0000039630913,0.000047835063,0.00010410366,9.9665e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019848849,0.00013055558,0.0062732464,0.011273614,0.00029480437,7.0468633e-7,0.000028645145,0.000004641626,0.045351632,0.00038133256,0.0030956825,0.93296665],"study_design_scores_gemma":[0.0004005078,0.00061221776,0.015026893,0.0007216305,0.00028680605,0.000091906084,0.000004186482,0.000011157202,0.00054062315,0.0003179331,0.98160034,0.00038582424],"about_ca_topic_score_codex":0.00005242983,"about_ca_topic_score_gemma":0.0000636481,"teacher_disagreement_score":0.97850466,"about_ca_system_score_codex":0.000007739957,"about_ca_system_score_gemma":0.00005237044,"threshold_uncertainty_score":0.67709833},"labels":[],"label_agreement":null},{"id":"W2135994776","doi":"10.1016/s0732-8893(00)00125-5","title":"In vitro activity of selected cephalosporins and erythromycin against staphylococci and pneumococci isolated at 38 North American medical centers participating in the SENTRY Antimicrobial Surveillance Program, 1997–1998","year":2000,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"Bristol-Myers Squibb","keywords":"Cephalosporin; Microbiology; Antimicrobial; Erythromycin; Medicine; Antibacterial agent; Biology; Antibiotics; Virology","score_opus":0.0043901373782577295,"score_gpt":0.2326347064060295,"score_spread":0.2282445690277718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135994776","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989926,0.00011564492,0.000003103362,0.00019368803,0.00004265814,0.00045209494,0.00017571566,0.000014830673,0.000009665623],"genre_scores_gemma":[0.9983766,0.0007314692,0.000009965084,0.00030843966,0.00003248252,0.00006895005,0.00045864112,0.00000971121,0.0000037562481],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99857575,0.0004022712,0.00029182713,0.0004096135,0.000037469417,0.0002830935],"domain_scores_gemma":[0.99932545,0.00023807904,0.00011454289,0.00016788623,0.000033401324,0.00012064146],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002363355,0.00016693962,0.00024685301,0.000047579197,0.000099856305,0.000021751113,0.00007448618,0.00009280961,0.000014448209],"category_scores_gemma":[0.0006660129,0.00014561534,0.000030412533,0.00022915863,0.00045396754,0.000010556931,0.00007092061,0.00015306125,9.62407e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025655227,0.00032747872,0.6719303,0.00004306667,0.00001713678,0.000013596197,0.00013282013,0.000004958368,0.32411563,3.911014e-7,0.000047954145,0.0031100907],"study_design_scores_gemma":[0.000907883,0.00017644989,0.9915035,0.000026271064,0.000013396224,0.00003223501,0.000020311805,0.00016954457,0.0066852793,0.0000014014965,0.00030044187,0.00016330545],"about_ca_topic_score_codex":0.0002385884,"about_ca_topic_score_gemma":0.0038750663,"teacher_disagreement_score":0.31957316,"about_ca_system_score_codex":0.000016040925,"about_ca_system_score_gemma":0.00005783204,"threshold_uncertainty_score":0.5938021},"labels":[],"label_agreement":null},{"id":"W2136220295","doi":"10.1099/ijs.0.001792-0","title":"Phylogenomic analyses of clostridia and identification of novel protein signatures that are specific to the genus Clostridium sensu stricto (cluster I)","year":2009,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Clostridia; Phylogenetic tree; Clostridiales; Clostridium; Clade; Genetics; Phylogenetics; Ribosomal RNA; 16S ribosomal RNA; Evolutionary biology; Gene; Bacteria","score_opus":0.035156105401178375,"score_gpt":0.28595308766706806,"score_spread":0.2507969822658897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136220295","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99283963,0.0028598106,0.0026912794,0.00084603793,0.00028137016,0.00034660858,0.00012673777,0.0000017373872,0.0000068025015],"genre_scores_gemma":[0.9988043,0.00011623298,0.00072842976,0.00006869821,0.00018304432,0.0000033822114,0.000038967162,0.0000047962167,0.000052174702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986734,0.00015304876,0.0008121978,0.00016547987,0.000108800465,0.00008711587],"domain_scores_gemma":[0.9981139,0.00006255748,0.0010370921,0.00016605653,0.0005821659,0.000038280847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053597166,0.00010753258,0.0002825173,0.00014590163,0.000042520787,0.000023197172,0.00026054535,0.00009820561,0.0000050530334],"category_scores_gemma":[0.00024495713,0.00007656021,0.000091347596,0.000070706184,0.000093329734,0.000012015604,0.00006186161,0.00007439622,9.368976e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013976487,0.000077678975,0.00062052504,0.00022096203,0.00013086406,9.059061e-7,0.000078972866,0.00014580204,0.9979325,0.00007942609,0.0004961536,0.00007647941],"study_design_scores_gemma":[0.0019109296,0.0007567082,0.11223937,0.0019878747,0.00019760836,0.0014203818,0.0016548282,0.00026212036,0.8780543,0.00020835208,0.00096457335,0.0003429552],"about_ca_topic_score_codex":0.000007630816,"about_ca_topic_score_gemma":0.0000036127685,"teacher_disagreement_score":0.119878165,"about_ca_system_score_codex":0.000026052086,"about_ca_system_score_gemma":0.000044070035,"threshold_uncertainty_score":0.31220347},"labels":[],"label_agreement":null},{"id":"W2138838174","doi":"10.1016/j.diagmicrobio.2012.09.014","title":"Direct mecA polymerase chain reaction testing of blood culture bottles growing Gram-positive cocci and the clinical potential in optimizing antibiotic therapy for staphylococcal bacteremia","year":2012,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"","keywords":"Antibiotics; Bacteremia; Microbiology; Gram-Positive Cocci; Polymerase chain reaction; Antibiotic therapy; Blood culture; Staphylococcus; SCCmec; Medicine; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Biology; Bacteria","score_opus":0.011236839946709968,"score_gpt":0.2636329764302732,"score_spread":0.25239613648356324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138838174","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961643,0.0026684687,0.00015592972,0.0000681667,0.00025254462,0.0005662402,0.000084019885,0.0000134988995,0.000026786485],"genre_scores_gemma":[0.9983473,0.0007295891,0.00018272793,0.00022616073,0.00022834372,0.000028118791,0.0002373069,0.000013145621,0.0000073333986],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99872977,0.00033427306,0.00036005356,0.0003165496,0.000021893029,0.000237488],"domain_scores_gemma":[0.9987216,0.0007619781,0.00017262931,0.00015363574,0.00008438723,0.000105779465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069489825,0.00015885134,0.0002515379,0.00004230121,0.00016620131,0.000028910958,0.000059201684,0.00017166891,0.0000024065828],"category_scores_gemma":[0.0028556883,0.00012189153,0.00009565035,0.00007126137,0.00035354795,0.000023695988,0.00005724154,0.00012037824,3.0304537e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039943866,0.00029537824,0.2692383,0.000034865196,0.00008030694,0.0000010859931,0.00011768849,0.000004752712,0.72819847,0.00011003069,0.000023254084,0.0014964148],"study_design_scores_gemma":[0.009053592,0.00076758594,0.8324426,0.00019177857,0.00043161018,0.00006496025,0.00030818552,0.00013016959,0.15575927,0.00014862565,0.00020947735,0.000492176],"about_ca_topic_score_codex":0.00007864438,"about_ca_topic_score_gemma":0.000021498525,"teacher_disagreement_score":0.5724392,"about_ca_system_score_codex":0.000006123917,"about_ca_system_score_gemma":0.000039932336,"threshold_uncertainty_score":0.4970592},"labels":[],"label_agreement":null},{"id":"W2139544475","doi":"10.5858/2001-125-1290-sbc","title":"Solitary Blood Cultures","year":2001,"lang":"en","type":"article","venue":"Archives of Pathology & Laboratory Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pathology","score_opus":0.011154311951273857,"score_gpt":0.2757175190714862,"score_spread":0.2645632071202123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139544475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99434245,0.0012564155,0.0002634088,0.0005996278,0.00020218834,0.0000881204,0.000020679703,0.000018735764,0.0032083518],"genre_scores_gemma":[0.9966538,0.00044910153,0.001336818,0.00055632775,0.0003815375,0.00000745439,0.00015014714,0.000011633917,0.00045318765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990521,0.00016447583,0.0002748962,0.0002786547,0.000069699345,0.00016014073],"domain_scores_gemma":[0.9993196,0.00004297717,0.00010523021,0.00037758806,0.00008032301,0.000074267904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021365644,0.000109906694,0.00018221501,0.000056458375,0.000054840777,0.000002281111,0.00017704642,0.000079983685,0.00007659369],"category_scores_gemma":[0.00054079155,0.00009178248,0.000039543484,0.0000971266,0.0005361297,0.0000031408574,0.00006196805,0.000082049766,0.0000046727864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051369534,0.00007232053,0.02221148,0.000016347425,0.000026044438,0.00003734947,0.00041273353,0.0000012434895,0.97533077,0.0002651992,0.0007080537,0.00086710195],"study_design_scores_gemma":[0.0037095475,0.0019642345,0.44105896,0.00014399302,0.00021488637,0.00041728688,0.0019824419,0.000023700457,0.4727914,0.0020088633,0.075150006,0.0005346759],"about_ca_topic_score_codex":0.00001281793,"about_ca_topic_score_gemma":0.00003085043,"teacher_disagreement_score":0.50253934,"about_ca_system_score_codex":0.0000016010091,"about_ca_system_score_gemma":0.000053013784,"threshold_uncertainty_score":0.3742781},"labels":[],"label_agreement":null},{"id":"W2139620768","doi":"10.1373/clinchem.2013.204644","title":"Use of MALDI-TOF for Diagnosis of Microbial Infections","year":2013,"lang":"en","type":"article","venue":"Clinical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University Health Network; Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Microbiology; Medicine; Chemistry; Computational biology; Chromatography; Biology","score_opus":0.0783298967976703,"score_gpt":0.34440005399208823,"score_spread":0.26607015719441796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139620768","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992574,0.000018638435,0.00013315331,0.000119469565,0.00012335513,0.00017061412,0.000066113505,0.0000070462165,0.00010422766],"genre_scores_gemma":[0.996979,0.000031620242,0.0015868768,0.000057221594,0.0001996212,0.00005504418,0.00015005737,0.000009733589,0.0009307997],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991046,0.000024894862,0.00052347366,0.00021612117,0.000035771573,0.00009513495],"domain_scores_gemma":[0.9989633,0.00018742081,0.00019585266,0.00032152806,0.00027271846,0.000059189842],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016539058,0.00007070196,0.00016454782,0.0000066562206,0.000023787275,0.000013590266,0.00010586526,0.00018743635,0.00018174971],"category_scores_gemma":[0.0023182037,0.00007236588,0.00019237999,0.000040333747,0.0001478174,0.0000046579394,0.000060241076,0.000057289082,0.0000040848568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015842024,0.00023613745,0.18678665,0.000083344516,0.000024683208,2.176072e-8,0.000002774994,0.0000012603816,0.8059139,0.0000044429044,0.006024289,0.00090663735],"study_design_scores_gemma":[0.00031210954,0.000090149915,0.026649479,0.000018957558,0.000022000235,0.0000010731653,0.000010034482,0.000021234431,0.9583398,0.000042607637,0.014406348,0.00008617605],"about_ca_topic_score_codex":0.000022756414,"about_ca_topic_score_gemma":0.000005597091,"teacher_disagreement_score":0.16013716,"about_ca_system_score_codex":0.0000035850792,"about_ca_system_score_gemma":0.000043666067,"threshold_uncertainty_score":0.29509953},"labels":[],"label_agreement":null},{"id":"W2140400415","doi":"10.1128/jcm.01509-06","title":"Verification of the IDI-MRSA Assay for Detecting Methicillin-Resistant <i>Staphylococcus aureus</i> in Diverse Specimen Types in a Core Clinical Laboratory Setting","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"North York General Hospital; University Health Network; University of Toronto","funders":"","keywords":"Methicillin-resistant Staphylococcus aureus; Staphylococcus aureus; Medicine; Clinical microbiology; Microbiology; Micrococcaceae; Staphylococcal infections; Biology; Antibacterial agent; Antibiotics; Bacteria","score_opus":0.049387945451504774,"score_gpt":0.35930529473613404,"score_spread":0.3099173492846293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140400415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99806124,0.00023899104,0.00021917398,0.00038440182,0.0007848245,0.0002218551,0.000052362804,0.000002515863,0.000034632176],"genre_scores_gemma":[0.99676234,0.000044639335,0.002345202,0.00022721005,0.0005546556,0.0000029908717,0.000021178266,0.000010847165,0.00003096426],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99628085,0.000959279,0.0022507943,0.000273026,0.00005087772,0.00018517383],"domain_scores_gemma":[0.9968268,0.0009589247,0.0014680421,0.00028088823,0.00042657065,0.000038764672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007605379,0.00011270057,0.000463543,0.00006300618,0.000045052973,0.0000113101805,0.00032334498,0.0004085193,0.0000070702426],"category_scores_gemma":[0.007485892,0.00008578643,0.00029718585,0.00016057398,0.0002217163,0.000007481248,0.000085345826,0.00044576314,0.0000011027813],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038932156,0.0001765598,0.16704784,0.00001815655,0.000023779581,0.0000010786824,0.000018562414,0.00004059936,0.83089817,0.000031948108,0.000432265,0.00092172157],"study_design_scores_gemma":[0.00455384,0.0009004921,0.6658836,0.00020015678,0.00009084209,0.0000041640747,0.00033263097,0.00009553888,0.2981214,0.00062917836,0.028884321,0.0003038274],"about_ca_topic_score_codex":0.000032950546,"about_ca_topic_score_gemma":0.00069343596,"teacher_disagreement_score":0.5327768,"about_ca_system_score_codex":0.000027177466,"about_ca_system_score_gemma":0.0002794091,"threshold_uncertainty_score":0.8961853},"labels":[],"label_agreement":null},{"id":"W2141478510","doi":"10.1001/jama.2012.8262","title":"Does This Adult Patient With Suspected Bacteremia Require Blood Cultures?","year":2012,"lang":"en","type":"review","venue":"JAMA","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":346,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Bacteremia; Medicine; Chills; Context (archaeology); Septic shock; Blood culture; Internal medicine; Leukocytosis; Sepsis; Intensive care medicine; Antibiotics; Microbiology","score_opus":0.018672572185381313,"score_gpt":0.27886988033811666,"score_spread":0.26019730815273534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141478510","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005856837,0.9892134,0.000008494937,0.00010438783,0.00074910256,0.0009143942,0.00023100014,0.00008416418,0.0028382044],"genre_scores_gemma":[0.0020140486,0.98840415,0.00070127234,0.000155512,0.0014842215,0.000113212474,0.0026767512,0.000084572304,0.004366233],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981627,0.0002044385,0.0005104774,0.0006167859,0.00016883413,0.00033679893],"domain_scores_gemma":[0.9982082,0.000021917234,0.00044955712,0.00082095613,0.00034772555,0.0001516321],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013563294,0.00040423722,0.0006107215,0.000045622113,0.00010735566,0.00015817072,0.0003087766,0.00060965156,0.0003446738],"category_scores_gemma":[0.0002881755,0.00021587603,0.00025086568,0.00014458106,0.000070471964,0.000013211065,0.00014062299,0.0002910333,0.0000777942],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004778304,0.00027518685,0.00014909674,0.0056715272,0.00044559338,0.000014723625,0.00018239625,2.446986e-8,0.00794902,0.00009254414,0.003784177,0.9813879],"study_design_scores_gemma":[0.00026782564,0.00011362059,0.00005149007,0.0014083231,0.0004965336,0.0000701269,0.000024604755,9.803668e-8,0.0010350767,0.0000034240709,0.99612,0.0004088746],"about_ca_topic_score_codex":0.00003549063,"about_ca_topic_score_gemma":0.00009817504,"teacher_disagreement_score":0.9923358,"about_ca_system_score_codex":0.000032931424,"about_ca_system_score_gemma":0.00014275861,"threshold_uncertainty_score":0.8803169},"labels":[],"label_agreement":null},{"id":"W2142828726","doi":"10.1128/jcm.05397-11","title":"First Comprehensive Evaluation of the M.I.C. Evaluator Device Compared to Etest and CLSI Reference Dilution Methods for Antimicrobial Susceptibility Testing of Clinical Strains of Anaerobes and Other Fastidious Bacterial Species","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Etest; Fastidious organism; Broth microdilution; Agar dilution; Microbiology; Anaerobic bacteria; Biology; Imipenem; Penicillin; Antimicrobial; Bacteria; Antibiotics; Minimum inhibitory concentration; Antibiotic resistance","score_opus":0.30754040265560556,"score_gpt":0.4876338743173591,"score_spread":0.18009347166175355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142828726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99681556,0.00017551702,0.0014371776,0.00010734629,0.00083636073,0.00045885803,0.00015612952,0.0000018041479,0.000011232291],"genre_scores_gemma":[0.9659426,0.000028610826,0.03350252,0.00008968574,0.0004023818,0.0000021891233,0.000018222878,0.000009087976,0.000004678274],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99528027,0.0019499445,0.0022555662,0.00026180135,0.000077357705,0.00017508573],"domain_scores_gemma":[0.9942902,0.0015574131,0.0019527377,0.0002789942,0.0018160603,0.00010460446],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.008965354,0.00013750326,0.000774788,0.000041461655,0.000060513397,0.000009680946,0.00021141538,0.00027617646,0.000016771586],"category_scores_gemma":[0.017079975,0.00010169378,0.00020636804,0.000089512505,0.0006235285,0.000013277772,0.00016367716,0.00017410275,1.8824713e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045131217,0.00021204022,0.19005644,0.00007411967,0.00007657994,1.194147e-8,0.000074118114,0.000021515521,0.80428404,0.000011829786,0.000070971786,0.004667005],"study_design_scores_gemma":[0.0021678843,0.0010576484,0.8642443,0.00012848522,0.00023968733,0.00002526273,0.00013780176,0.00015956345,0.1288228,0.00003255759,0.0028643603,0.00011967304],"about_ca_topic_score_codex":0.000024512732,"about_ca_topic_score_gemma":0.00015834512,"teacher_disagreement_score":0.67546123,"about_ca_system_score_codex":0.000012618019,"about_ca_system_score_gemma":0.00023676708,"threshold_uncertainty_score":0.99119955},"labels":[],"label_agreement":null},{"id":"W2143539359","doi":"10.1128/cmr.00002-14","title":"Population-Based Epidemiology and Microbiology of Community-Onset Bloodstream Infections","year":2014,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":324,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; Royal Inland Hospital; University of Calgary","funders":"","keywords":"Staphylococcus aureus; Streptococcus pneumoniae; Epidemiology; Medicine; Etiology; Blood culture; Population; Bacteremia; Microbiology; Intensive care medicine; Biology; Internal medicine; Antibiotics; Bacteria; Environmental health","score_opus":0.16858459142280754,"score_gpt":0.4525405916336226,"score_spread":0.283956000210815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143539359","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012137538,0.9852832,0.00017387599,0.000061374856,0.00076181977,0.0011205528,0.0004079759,0.000025378646,0.000028308665],"genre_scores_gemma":[0.00107037,0.9848203,0.0009448322,0.0008626323,0.00029163665,0.00010591684,0.011724191,0.000046798,0.00013334685],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9797657,0.01527638,0.003818195,0.0007408887,0.0000076186575,0.00039121977],"domain_scores_gemma":[0.99254984,0.003295015,0.0023932632,0.0014731572,0.00013694263,0.00015180702],"candidate_categories":["metaresearch","metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0073978724,0.0005521237,0.0045362376,0.00013665363,0.00021070379,0.000009917579,0.0005592992,0.0018194546,0.000057438996],"category_scores_gemma":[0.013888568,0.00044448083,0.00122152,0.00017289599,0.00087508064,0.0000028619593,0.00034508065,0.0010116643,0.00008027947],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002823563,0.00090501073,0.03510078,0.019418089,0.0005897767,3.1802765e-7,0.000012853955,9.917303e-7,0.0062007653,0.00008852063,0.012476059,0.9251786],"study_design_scores_gemma":[0.00027866507,0.0005930523,0.00040054068,0.0015271307,0.00054447073,0.00017558825,0.0000023087268,5.9726545e-7,0.000007035174,0.000033268512,0.9960838,0.00035354364],"about_ca_topic_score_codex":0.00009525289,"about_ca_topic_score_gemma":0.00023888078,"teacher_disagreement_score":0.98360777,"about_ca_system_score_codex":0.000028129136,"about_ca_system_score_gemma":0.00022752027,"threshold_uncertainty_score":0.9998007},"labels":[],"label_agreement":null},{"id":"W2144901667","doi":"10.1128/jcm.38.11.3953-3959.2000","title":"Identification of <i>Enterococcus</i> Species and Phenotypically Similar <i>Lactococcus</i> and <i>Vagococcus</i> Species by Reverse Checkerboard Hybridization to Chaperonin 60 Gene Sequences","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; National Research Council Canada; Plant Biotechnology Institute; BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Enterococcus hirae; Enterococcus; Enterococcus faecium; Microbiology; Biology; Enterococcus faecalis; Lactococcus; Lactococcus lactis; Genetics; Bacteria; Staphylococcus aureus; Antibiotics","score_opus":0.019840171037783808,"score_gpt":0.2915549544418808,"score_spread":0.271714783404097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144901667","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99662125,0.00040821626,0.0007386362,0.0014526276,0.00029042692,0.00025885296,0.00014306961,0.0000067655556,0.00008013281],"genre_scores_gemma":[0.9934883,0.0020170158,0.0015733085,0.0013839088,0.00038685644,0.0000042883676,0.00009859695,0.000016920618,0.0010307955],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972255,0.00031660555,0.0017582218,0.00041432693,0.000077167155,0.0002081753],"domain_scores_gemma":[0.9982825,0.000118394404,0.0008157084,0.0002698308,0.00034207568,0.00017149169],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013015156,0.00018863966,0.0005374164,0.000059705813,0.000075624426,0.000051435163,0.00025581772,0.00023540965,0.00011300964],"category_scores_gemma":[0.0008734786,0.00016586801,0.00014465729,0.00010598293,0.00042312106,0.00002702785,0.00008834653,0.0001917844,0.0000074711857],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039360076,0.00012854236,0.010022736,0.000024724459,0.00005540481,0.0000018480729,0.000066606524,0.000009727096,0.97885287,0.000010965843,0.0078085414,0.0026244507],"study_design_scores_gemma":[0.0014529215,0.0010736673,0.03680016,0.00005974842,0.00008294934,0.00013329675,0.0001162042,0.000011699859,0.71665794,0.000075964184,0.24324824,0.0002872334],"about_ca_topic_score_codex":0.0000042735383,"about_ca_topic_score_gemma":0.000015373382,"teacher_disagreement_score":0.26219493,"about_ca_system_score_codex":0.000012642844,"about_ca_system_score_gemma":0.00007575709,"threshold_uncertainty_score":0.6763901},"labels":[],"label_agreement":null},{"id":"W2145947268","doi":"10.1111/j.1469-0691.2005.01278.x","title":"Routine antimicrobial susceptibility testing of coagulase-negative staphylococci isolated from blood cultures: is it necessary?","year":2005,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Coagulase; Vancomycin; Antibiotics; Medicine; Staphylococcus; cons; Blood culture; Antimicrobial; Microbiology; Clinical significance; Micrococcaceae; Staphylococcus aureus; Antibacterial agent; Internal medicine; Biology; Bacteria","score_opus":0.0340486815017332,"score_gpt":0.32485481385066706,"score_spread":0.2908061323489339,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145947268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984062,0.00006737878,0.0003217698,0.00033007513,0.00028239808,0.0002293848,0.00017669672,0.00002634178,0.00015978284],"genre_scores_gemma":[0.9963067,0.00012544326,0.001737987,0.00085394114,0.00041771046,0.000004000376,0.0004171227,0.000011399237,0.00012570446],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980181,0.0003614352,0.00079277204,0.0006117641,0.00002197899,0.00019398138],"domain_scores_gemma":[0.99875134,0.00022543689,0.0003571525,0.00030648423,0.0002875181,0.00007204033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005844989,0.0001822255,0.00032646293,0.000032507047,0.00014471155,0.000023445147,0.00010112485,0.0004960883,0.00013797103],"category_scores_gemma":[0.0015460744,0.00017008503,0.0001307623,0.00012149393,0.00041662814,0.000015624573,0.000121297846,0.00024514168,0.00001611699],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012831278,0.00026930613,0.25700656,0.000014324016,0.00007881253,1.4355109e-7,0.000072023606,0.0000045742268,0.7399758,0.0000031035793,0.0013417245,0.0011053211],"study_design_scores_gemma":[0.002203694,0.00089914555,0.2629031,0.00006367252,0.00013739897,0.00002177874,0.00006582883,0.00017670468,0.728028,0.000074064774,0.005083803,0.0003427953],"about_ca_topic_score_codex":0.0003083967,"about_ca_topic_score_gemma":0.0005147069,"teacher_disagreement_score":0.011947782,"about_ca_system_score_codex":0.000009284191,"about_ca_system_score_gemma":0.000052534953,"threshold_uncertainty_score":0.69358665},"labels":[],"label_agreement":null},{"id":"W2147062109","doi":"10.1586/14787210.2013.856262","title":"Monitoring the epidemiology of bloodstream infections: aims, methods and importance","year":2013,"lang":"en","type":"review","venue":"Expert Review of Anti-infective Therapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Inland Hospital","funders":"","keywords":"Intensive care medicine; Medicine; Bloodstream infection; Epidemiology; Population; Risk analysis (engineering); Environmental health; Pathology","score_opus":0.09571686765545094,"score_gpt":0.472001377623719,"score_spread":0.37628450996826807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147062109","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014446035,0.9962148,0.00050533377,0.000043074197,0.0003663388,0.0013312189,0.000013188217,0.000012691897,0.00006877159],"genre_scores_gemma":[0.000118016425,0.99490815,0.0041042776,0.00011809879,0.00034521607,0.00028920695,0.000053998847,0.000037995687,0.000025035266],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99581486,0.0021368486,0.0012380648,0.0005252636,0.00007618837,0.00020880377],"domain_scores_gemma":[0.9967655,0.00065938535,0.0013509383,0.00086786534,0.00029875422,0.000057591653],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023606664,0.00038380557,0.0019327069,0.000060278137,0.00008812876,0.000008370771,0.00029797188,0.0002745627,0.000057588502],"category_scores_gemma":[0.0019491506,0.00023756833,0.0005869994,0.00022642458,0.0003197397,0.000009221603,0.00011757469,0.00021497293,0.0000030042183],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000016500874,0.00010191109,0.0031209185,0.009311558,0.00028637334,1.05452735e-7,0.0000305282,2.5024374e-8,0.007872172,0.00004012726,0.00017619666,0.97905844],"study_design_scores_gemma":[0.0001851505,0.00031852527,0.001528684,0.021427564,0.00019620356,0.00004561025,0.00002723207,6.977371e-7,0.005933711,0.0000745579,0.96988726,0.00037483743],"about_ca_topic_score_codex":0.000104830535,"about_ca_topic_score_gemma":0.0000021227888,"teacher_disagreement_score":0.9786836,"about_ca_system_score_codex":0.000019355975,"about_ca_system_score_gemma":0.00013106405,"threshold_uncertainty_score":0.9687755},"labels":[],"label_agreement":null},{"id":"W2150271407","doi":"10.1128/aac.44.10.2922-2923.2000","title":"Potencies of Newer Fluoroquinolones against Viridans Group Streptococci Isolated in 637 Cases of Bloodstream Infection in the SENTRY Antimicrobial Surveillance Program (1997 to 1999): Beyond Canada!","year":2000,"lang":"en","type":"letter","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Viridans streptococci; Broth microdilution; Antimicrobial; Medicine; Microbiology; Streptococcus; Biology; Minimum inhibitory concentration","score_opus":0.00895006657795879,"score_gpt":0.23700405971516642,"score_spread":0.22805399313720762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150271407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821823,0.00003842614,0.000003353926,0.016236639,0.00019172861,0.0009014655,0.00040197,0.000010957353,0.000033142376],"genre_scores_gemma":[0.9362001,0.0012251141,0.00010421049,0.060156874,0.00032797296,0.00001806794,0.001834553,0.00003981948,0.000093293966],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99813354,0.0001883731,0.0006454654,0.00053529895,0.00014537676,0.00035196188],"domain_scores_gemma":[0.99916124,0.000031930147,0.00027984832,0.00040502884,0.000087638684,0.00003433968],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018119784,0.000332404,0.00045635432,0.000119497585,0.00006308232,0.000055337823,0.00026200752,0.0004340172,0.000023494213],"category_scores_gemma":[0.00003169672,0.0002939213,0.00010865356,0.0002807941,0.00013372571,0.000010005045,0.00005217268,0.00030809763,5.362297e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028739212,0.0005994856,0.092668176,0.00034523424,0.00012570624,0.000057790152,0.00043790613,0.00003334897,0.5142343,3.762033e-7,0.379208,0.012002272],"study_design_scores_gemma":[0.0032493921,0.00087899464,0.34058112,0.00058521685,0.000057667552,0.00011400248,0.00012864856,0.00005153192,0.11142303,0.000004751962,0.54165316,0.00127246],"about_ca_topic_score_codex":0.09645483,"about_ca_topic_score_gemma":0.19170585,"teacher_disagreement_score":0.4028113,"about_ca_system_score_codex":0.00003145146,"about_ca_system_score_gemma":0.0001699948,"threshold_uncertainty_score":0.9999513},"labels":[],"label_agreement":null},{"id":"W2152141309","doi":"10.1139/f09-052","title":"Clostridium botulinum type E occurs and grows in the alga Cladophora glomerata","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Fisheries and Aquatic Sciences","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Geological Survey","keywords":"Cladophora; Mesocosm; Biology; Algae; Botany; Ecology; Clostridiaceae; Microbiology; Toxin","score_opus":0.02514605970780754,"score_gpt":0.25348410569513924,"score_spread":0.2283380459873317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152141309","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99298185,0.00094642636,0.000009881787,0.0055511515,0.00014495492,0.00003955856,0.0000015440911,4.835936e-7,0.00032414173],"genre_scores_gemma":[0.99868816,0.00010982217,0.00029216448,0.00079410727,0.00007913673,2.1570963e-7,0.0000018514392,0.0000012167858,0.000033335666],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994992,0.00004833597,0.00016600815,0.00009938384,0.00006627336,0.000120810546],"domain_scores_gemma":[0.9997053,0.000020653253,0.000070420545,0.000070318114,0.000028946248,0.00010437471],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056494714,0.000051054685,0.00007312904,0.000044128454,0.0001491972,0.00020286033,0.00015694016,0.00003259686,0.000011475038],"category_scores_gemma":[0.0003687069,0.00003519195,0.000014717361,0.00015031896,0.00023954442,0.000016094078,0.000005442042,0.00005538401,2.798681e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012622759,0.00008376185,0.5831396,0.000040227067,0.00003873839,0.00010465708,0.007177083,0.000009641567,0.23213889,0.0018640107,0.044524662,0.13075249],"study_design_scores_gemma":[0.0009846049,0.0033250067,0.87704045,0.00012650191,0.000041666237,0.00070401566,0.01280395,0.00042547405,0.0053437855,0.005938424,0.09273415,0.0005319484],"about_ca_topic_score_codex":0.0007355171,"about_ca_topic_score_gemma":0.0061867805,"teacher_disagreement_score":0.29390085,"about_ca_system_score_codex":0.0000051107036,"about_ca_system_score_gemma":0.00029706207,"threshold_uncertainty_score":0.34523687},"labels":[],"label_agreement":null},{"id":"W2154268169","doi":"10.1128/jcm.01622-10","title":"Evaluation of CLSI Agar Dilution Method and Trek Sensititre Broth Microdilution Panel for Determining Antimicrobial Susceptibility of Streptococcus pneumoniae","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Broth microdilution; Agar dilution; Streptococcus pneumoniae; Microbiology; Penicillin; Antimicrobial; Agar; Meropenem; Agar Dilution Method; Medicine; Biology; Antibiotics; Minimum inhibitory concentration; Bacteria; Antibiotic resistance","score_opus":0.0924260553256284,"score_gpt":0.41574410495811814,"score_spread":0.3233180496324897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154268169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954773,0.000045608358,0.0031102418,0.00010799249,0.00078754034,0.00035912122,0.00009796274,0.000003079231,0.000011143666],"genre_scores_gemma":[0.98841995,0.000033259865,0.011041661,0.000045520563,0.00035815334,0.0000026370274,0.00007673151,0.000011344386,0.000010770929],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99695235,0.0008229785,0.0016546631,0.00032890475,0.00007759921,0.00016349238],"domain_scores_gemma":[0.9959686,0.00033561743,0.0016120062,0.00027645918,0.0017345863,0.00007274912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007369526,0.00013659017,0.0005437736,0.00007356747,0.000049506878,0.000011470486,0.00014819129,0.0004143282,0.000016123995],"category_scores_gemma":[0.005127716,0.00012228057,0.0003031583,0.00005653252,0.00030481667,0.000012915281,0.0000654474,0.00025375054,4.264343e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025706913,0.00018262026,0.031391006,0.000050618055,0.00007887237,2.1605108e-7,0.000041850428,0.000016928865,0.9386301,0.000007920519,0.00010996594,0.029232826],"study_design_scores_gemma":[0.0029339076,0.001180026,0.17651613,0.000060722454,0.00033910593,0.00012830706,0.000052564053,0.0004013978,0.81715786,0.00020626544,0.00085802213,0.00016568053],"about_ca_topic_score_codex":0.000009780368,"about_ca_topic_score_gemma":0.0001598679,"teacher_disagreement_score":0.14512514,"about_ca_system_score_codex":0.000012920716,"about_ca_system_score_gemma":0.00028393738,"threshold_uncertainty_score":0.6138725},"labels":[],"label_agreement":null},{"id":"W2155105126","doi":"10.1007/s10096-004-1275-5","title":"A reliable method to detect bacterial contamination of blood components using an automated blood culture system","year":2005,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Regina Qu'Appelle Health Region; Regina General Hospital","funders":"","keywords":"Contamination; Blood culture; Medical microbiology; Microbiology; Medicine; Chromatography; Biology; Chemistry; Antibiotics; Ecology","score_opus":0.03004760320058281,"score_gpt":0.34367723765897445,"score_spread":0.31362963445839165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155105126","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963019,0.00013939696,0.0025255368,0.000019774872,0.0006384003,0.00017035498,0.00007469453,0.00005367305,0.00007628177],"genre_scores_gemma":[0.9900229,0.000017978537,0.008652843,0.00013263512,0.0010109949,8.90207e-7,0.000111411624,0.000026884903,0.00002345863],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.995733,0.0022455582,0.0014594361,0.00031927464,0.000056700115,0.00018600003],"domain_scores_gemma":[0.997779,0.00007798795,0.0010546165,0.0002793643,0.0005855026,0.00022354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018584485,0.00017340397,0.00048497325,0.0000895754,0.00009369893,0.00003984727,0.00026683134,0.00013414487,0.000025565634],"category_scores_gemma":[0.0010149413,0.00015226421,0.00027887404,0.00010357773,0.00009263467,0.000020079218,0.00009647352,0.00017534631,0.0000112552525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029191864,0.0006311855,0.01163652,0.000033108943,0.00026425233,0.000011006904,0.000035996178,0.00025500488,0.9851579,0.0000032073287,0.0001922209,0.0014876651],"study_design_scores_gemma":[0.018523185,0.0152048785,0.28613135,0.00083869905,0.0037981,0.0037863692,0.00023755901,0.0008216945,0.6453345,0.000011623279,0.024081651,0.001230385],"about_ca_topic_score_codex":0.0000069061043,"about_ca_topic_score_gemma":0.0000078774665,"teacher_disagreement_score":0.3398234,"about_ca_system_score_codex":0.00001625836,"about_ca_system_score_gemma":0.00009986801,"threshold_uncertainty_score":0.6209154},"labels":[],"label_agreement":null},{"id":"W2156516172","doi":"10.5858/2000-124-0357-eorotp","title":"Effects of restructuring on the performance of microbiology laboratories in Alberta.","year":2000,"lang":"en","type":"article","venue":"PubMed","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Restructuring; Clinical microbiology; Microbiology; Medicine; Biology; Business","score_opus":0.0056470889104160175,"score_gpt":0.18681115829969597,"score_spread":0.18116406938927995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156516172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99933773,0.000035151737,1.3330833e-7,0.00007976974,0.00005934012,0.00018693233,0.000003334164,0.0000015012433,0.00029608575],"genre_scores_gemma":[0.9995209,0.00002960933,0.000011359549,0.0000452368,0.000025694926,0.00006306469,0.000010252544,0.0000036406097,0.0002902335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99959004,0.000057003403,0.00013576608,0.00010356148,0.000019757332,0.00009388098],"domain_scores_gemma":[0.9997141,0.00005050576,0.00004529885,0.00015403287,0.000024396088,0.000011678177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013172708,0.000044628516,0.0000702906,0.000014134503,0.000015194351,0.000003395153,0.00009412334,0.0000463302,0.000011762882],"category_scores_gemma":[0.00021060249,0.000033194967,0.000016869188,0.00006988423,0.00006115744,0.0000015934594,0.000014965773,0.000033532353,0.0000010903575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007242008,0.00002356903,0.021748941,0.000044869397,0.000006602633,9.2615785e-8,0.000050323055,0.000011197094,0.97119975,0.00006340895,0.000030705974,0.006748132],"study_design_scores_gemma":[0.00009265545,0.000018825029,0.3726406,0.000005100655,0.0000014170093,4.6132007e-7,0.000003551529,0.0000018330683,0.6265286,0.000005982255,0.0006777466,0.000023214134],"about_ca_topic_score_codex":0.00006740197,"about_ca_topic_score_gemma":0.00010268971,"teacher_disagreement_score":0.35089165,"about_ca_system_score_codex":0.0000039675256,"about_ca_system_score_gemma":0.000010713434,"threshold_uncertainty_score":0.13536514},"labels":[],"label_agreement":null},{"id":"W2157068725","doi":"10.1016/j.ijantimicag.2006.07.021","title":"Examination of cfiA-mediated carbapenem resistance in Bacteroides fragilis strains from a European antibiotic susceptibility survey","year":2006,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Imipenem; Carbapenem; Microbiology; Meropenem; Biology; Antibiotics; Antibiotic resistance","score_opus":0.018619327822317348,"score_gpt":0.2560934084514555,"score_spread":0.23747408062913816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157068725","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99835205,0.000032631175,0.00019658511,0.00009132389,0.0005661196,0.00008163641,0.00028837478,0.000004042043,0.0003872065],"genre_scores_gemma":[0.9979236,0.000038170318,0.0007178211,0.00006544893,0.00025925259,1.562476e-7,0.0008726184,0.000014801552,0.00010814029],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980742,0.00047955062,0.0008328894,0.00023801396,0.000247659,0.00012768731],"domain_scores_gemma":[0.9984267,0.0000534931,0.0005951127,0.00017648362,0.0007079936,0.000040228046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011204343,0.00012407835,0.00019819856,0.00013671452,0.000023375771,0.000060148202,0.00042933522,0.000077876546,0.00005152154],"category_scores_gemma":[0.00064442295,0.00012811746,0.000104927356,0.00011349616,0.0000816298,0.000027611384,0.00007790139,0.000113322276,0.0000053043354],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012227625,0.00024032296,0.22584818,0.000008581382,0.00003961264,0.000014051324,0.00008393953,0.000035145473,0.77266204,0.0000031183442,0.0005724036,0.0003703255],"study_design_scores_gemma":[0.0007741779,0.00003203948,0.9156523,0.00009441448,0.00000792285,0.0000044757803,0.000023360353,0.000018420886,0.0830317,0.000015150622,0.00024817637,0.00009790582],"about_ca_topic_score_codex":0.0007827097,"about_ca_topic_score_gemma":0.005751694,"teacher_disagreement_score":0.6898041,"about_ca_system_score_codex":0.000060041926,"about_ca_system_score_gemma":0.00007073185,"threshold_uncertainty_score":0.5224479},"labels":[],"label_agreement":null},{"id":"W2159218173","doi":"10.1093/jac/dkm062","title":"Carbapenem resistance in Bacteroides fragilis","year":2007,"lang":"en","type":"letter","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Microbiology; Carbapenem; Biology; Bacteroides; Antibacterial agent; Medicine; Antibiotics; Bacteria","score_opus":0.01214758935608831,"score_gpt":0.2547202418501384,"score_spread":0.2425726524940501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159218173","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.77812815,0.00069194083,0.00024511252,0.21793231,0.0015201888,0.00027032485,0.000038965292,0.000011977432,0.0011609953],"genre_scores_gemma":[0.09405826,0.0015809209,0.00810799,0.8759693,0.011986194,0.0000022422912,0.00036372137,0.00019608831,0.0077352687],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981234,0.00011559945,0.0008973432,0.00032938897,0.00020821122,0.00032606788],"domain_scores_gemma":[0.99844235,0.000035685192,0.00076806033,0.00038517962,0.00031886096,0.00004985601],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006504433,0.00027981275,0.0004715246,0.0002262459,0.00003967027,0.00009122962,0.0004725962,0.00081227266,0.00007978006],"category_scores_gemma":[0.00012370333,0.00027493422,0.00029590316,0.00015153016,0.00009001231,0.000010470202,0.00003402998,0.0009584045,0.0000055282144],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014591686,0.00003449453,0.0006165214,0.00005042982,0.00003877353,0.000058369027,0.000042204912,4.949811e-7,0.4825198,3.2004357e-7,0.5162992,0.000193507],"study_design_scores_gemma":[0.0008478742,0.000065656845,0.0012097546,0.00018588314,0.000013887538,0.00006459893,0.000010039592,2.985033e-7,0.1334817,0.000015443995,0.86383694,0.0002678908],"about_ca_topic_score_codex":0.000015162639,"about_ca_topic_score_gemma":0.000095632226,"teacher_disagreement_score":0.68406993,"about_ca_system_score_codex":0.00007197866,"about_ca_system_score_gemma":0.00017980821,"threshold_uncertainty_score":0.99997026},"labels":[],"label_agreement":null},{"id":"W2159598696","doi":"10.1099/0022-1317-49-3-279","title":"Use of rep-PCR to define genetic relatedness among Bacteroides fragilis strains","year":2000,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Financiadora de Estudos e Projetos; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Bacteroides fragilis; Biology; Dendrogram; Microbiology; Genetic diversity; Genotype; Pathogen; Bacteroides; Flora (microbiology); Bacteroidaceae; Genetic variability; Genetics; Bacteria; Antibiotics; Gene; Medicine","score_opus":0.02098720102318548,"score_gpt":0.26093587818534486,"score_spread":0.2399486771621594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159598696","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99818075,0.00017356548,0.0002991385,0.0008901578,0.00031190095,0.00008342325,0.000023062987,0.000004573858,0.000033417433],"genre_scores_gemma":[0.9963737,0.00026585706,0.0021480098,0.00053139066,0.00023867896,0.0000012462962,0.000040527586,0.000013541723,0.00038702937],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99841356,0.00021571094,0.00082552957,0.00021857569,0.00012221714,0.00020437971],"domain_scores_gemma":[0.9989447,0.000055228906,0.0002762217,0.00026992257,0.00022368287,0.00023021473],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006283939,0.000121649355,0.0003011494,0.00007522613,0.00003482627,0.000018984607,0.00034926782,0.0003731031,0.0013312263],"category_scores_gemma":[0.0014540907,0.00010129333,0.00013601659,0.00010787847,0.0002107062,0.00000777802,0.00006842877,0.00023629953,0.0000144122305],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010040052,0.0001098982,0.008919592,0.000014236585,0.000061049024,0.000023379069,0.00008262925,0.000027253622,0.9731353,0.0000052325818,0.0033507212,0.014170301],"study_design_scores_gemma":[0.0027235632,0.0026061458,0.5824547,0.00049142895,0.00015851179,0.0027168992,0.00017949073,0.00008566488,0.22277498,0.00009759978,0.18503869,0.00067234266],"about_ca_topic_score_codex":0.00007290609,"about_ca_topic_score_gemma":0.00008624903,"teacher_disagreement_score":0.7503603,"about_ca_system_score_codex":0.000015555117,"about_ca_system_score_gemma":0.00013932987,"threshold_uncertainty_score":0.9995817},"labels":[],"label_agreement":null},{"id":"W2160436097","doi":"10.1128/jcm.39.8.2880-2883.2001","title":"Comparison of the BacT/Alert PF Pediatric FAN Blood Culture Bottle with the Standard Pediatric Blood Culture Bottle, the Pedi-BacT","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services","funders":"","keywords":"Bottle; Blood culture; Medicine; Microbiology; Biology; Antibiotics","score_opus":0.02857144932038592,"score_gpt":0.345127704355599,"score_spread":0.31655625503521306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160436097","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939294,0.0023437918,0.00010016759,0.0022507168,0.0008635861,0.00025773045,0.000058579753,0.0000068258755,0.00018923623],"genre_scores_gemma":[0.9937421,0.0017969207,0.00041140674,0.00052077946,0.0027218196,0.0000029845496,0.000028786097,0.000020404226,0.00075481663],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99692625,0.0008255155,0.0014365962,0.0003396503,0.0001566117,0.00031538465],"domain_scores_gemma":[0.9965119,0.00031256626,0.0017826633,0.00061987655,0.00066285377,0.000110137385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016713523,0.00024838533,0.0006201566,0.000035635578,0.0002560423,0.00005512895,0.0009916457,0.00045769353,0.00007276625],"category_scores_gemma":[0.0013566632,0.00010628354,0.0005141571,0.00030642838,0.00038974482,0.000011785913,0.00018309354,0.00096102786,0.0000056911445],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005997531,0.00067205157,0.66233206,0.00003412661,0.000287329,0.0000046352748,0.0003458616,0.00001704109,0.29895794,0.000013907105,0.036255028,0.0004802284],"study_design_scores_gemma":[0.0112229,0.010405784,0.5225577,0.000093319184,0.0051596845,0.0024924583,0.0024565423,0.0000095282685,0.07048037,0.00012260668,0.3738962,0.0011029219],"about_ca_topic_score_codex":0.0000065026143,"about_ca_topic_score_gemma":0.00008910448,"teacher_disagreement_score":0.33764118,"about_ca_system_score_codex":0.000009349915,"about_ca_system_score_gemma":0.000315362,"threshold_uncertainty_score":0.4334117},"labels":[],"label_agreement":null},{"id":"W2160790523","doi":"10.1371/journal.pone.0013592","title":"Obtaining Valid Laboratory Data in Clinical Trials Conducted in Resource Diverse Settings: Lessons Learned from a Microbicide Phase III Clinical Trial","year":2010,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec; Université Laval","funders":"Bill and Melinda Gates Foundation; United States Agency for International Development","keywords":"Microbicide; Medicine; Quality assurance; Microbicides for sexually transmitted diseases; Clinical trial; Medical physics; Chlamydia trachomatis; Quality control; Human immunodeficiency virus (HIV); Family medicine; Environmental health; Gynecology; Control (management); External quality assessment; Computer science; Population; Pathology","score_opus":0.4897092579988105,"score_gpt":0.4836436839304854,"score_spread":0.006065574068325086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160790523","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996791,0.00004725204,0.00001588078,0.0013133927,0.00047086482,0.0006911252,0.0005898231,0.000033745593,0.000046884234],"genre_scores_gemma":[0.9913374,0.00008172404,0.002742967,0.00064678176,0.0017511828,0.000023600142,0.0032786168,0.00003008895,0.000107642205],"study_design_codex":"bench_or_experimental","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9932046,0.0029578013,0.0022622875,0.0010897922,0.0001832291,0.0003022669],"domain_scores_gemma":[0.99623686,0.0012520208,0.00067025545,0.0015195396,0.00015023383,0.00017106935],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.01582817,0.00018865264,0.00083692383,0.00008010132,0.000072420524,0.00009281863,0.0006692609,0.0005550814,0.00011711907],"category_scores_gemma":[0.049249124,0.00019916837,0.00012529724,0.00020538074,0.00020587211,0.000016794236,0.0004978746,0.0008764135,0.000021825002],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009012409,0.0034334597,0.00960576,0.000010916382,0.000123689,0.000009167362,0.00009809998,2.2402905e-7,0.9713035,0.000004175075,0.00092633005,0.005472239],"study_design_scores_gemma":[0.49094015,0.0023273726,0.028545672,0.0007106147,0.0010287773,0.0000028591382,0.0029512078,0.001483678,0.40667024,0.00025562607,0.06297856,0.0021052333],"about_ca_topic_score_codex":0.00016295447,"about_ca_topic_score_gemma":0.001177359,"teacher_disagreement_score":0.5646333,"about_ca_system_score_codex":0.00001347568,"about_ca_system_score_gemma":0.0003524948,"threshold_uncertainty_score":0.9587594},"labels":[],"label_agreement":null},{"id":"W2161598609","doi":"10.1016/j.mimet.2013.04.008","title":"A simple shotgun proteomics method for rapid bacterial identification","year":2013,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Shotgun proteomics; Shotgun; Proteome; Computational biology; Database search engine; Proteomics; Shotgun sequencing; Identification (biology); Bottom-up proteomics; Genome; Bacterial genome size; Biology; Computer science; Bioinformatics; Gene; Genetics; Chemistry; Mass spectrometry; Tandem mass spectrometry; Search engine; Chromatography; World Wide Web","score_opus":0.036589401410348235,"score_gpt":0.37194984177223617,"score_spread":0.33536044036188795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161598609","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.49464017,0.000077049095,0.5041265,0.00022810194,0.000451144,0.00043147785,0.000016796974,0.0000067769715,0.000021988792],"genre_scores_gemma":[0.1456545,0.000040484916,0.85305774,0.00022814861,0.00069018756,0.00004664819,0.000100060526,0.000015565485,0.00016664606],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99782795,0.0008195444,0.0008143304,0.00027535282,0.00004969506,0.0002131058],"domain_scores_gemma":[0.99821854,0.00020632298,0.00062125555,0.00025100724,0.00060491764,0.00009798217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032317974,0.0001474571,0.00030488972,0.000055470584,0.00008891405,0.00010995285,0.00032153615,0.00025031948,0.00024817802],"category_scores_gemma":[0.0028835412,0.00011065609,0.0002723896,0.00007837976,0.000061666135,0.000015292922,0.00007500647,0.00013510605,0.0000080631735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013657178,0.000074604424,0.00011536614,0.0000137429115,0.00004146548,1.4564066e-7,0.00001796282,0.0000045396773,0.951076,0.000028606913,0.0024358975,0.046055097],"study_design_scores_gemma":[0.00062450493,0.0005387935,0.0060378695,0.0000077960685,0.000034084373,0.00006834447,0.000056012024,0.00012270712,0.94674766,0.001626997,0.04396999,0.00016524801],"about_ca_topic_score_codex":0.000005490427,"about_ca_topic_score_gemma":0.0000011804674,"teacher_disagreement_score":0.34898567,"about_ca_system_score_codex":0.000023589537,"about_ca_system_score_gemma":0.00006262059,"threshold_uncertainty_score":0.45124245},"labels":[],"label_agreement":null},{"id":"W2162552339","doi":"10.1093/jac/45.4.475","title":"Resistance profile of Bacteroides fragilis isolated in Brazil. Do they shelter the cfiA gene?","year":2000,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Cefoxitin; Microbiology; Imipenem; Meropenem; Clindamycin; Etest; Penicillin; Biology; Metronidazole; Antibiotics; Antibiotic resistance; Bacteria","score_opus":0.005987393438371895,"score_gpt":0.24070223931598084,"score_spread":0.23471484587760894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162552339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99798375,0.00015995809,0.000043116324,0.0011778045,0.00011073316,0.00012535928,0.000013969018,0.0000032535536,0.00038207925],"genre_scores_gemma":[0.996741,0.00054380315,0.0010200117,0.0006428988,0.00018936094,8.994669e-7,0.000011268851,0.000018913619,0.00083187124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989163,0.0001069494,0.00056274346,0.00016261972,0.000098372184,0.00015301639],"domain_scores_gemma":[0.9991978,0.000019295108,0.00030235708,0.00027672044,0.0001696586,0.000034202258],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044002713,0.000121175624,0.00021332518,0.0000479024,0.00004832019,0.00005021165,0.00030970576,0.00011198467,0.00033547645],"category_scores_gemma":[0.000044955057,0.00008835637,0.00014117417,0.00010869727,0.00008097917,0.000014519466,0.000015342026,0.00014535022,0.0000044056683],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007003871,0.0000899792,0.0026550773,0.000014543106,0.000036433044,0.0000017366417,0.0004005242,0.000015512524,0.9903706,0.0000028810864,0.0034714343,0.0022409204],"study_design_scores_gemma":[0.0012892302,0.00012825895,0.021811055,0.000089068584,0.00001079534,0.00004554347,0.000048130012,0.000011584703,0.9603995,0.00006796976,0.015949821,0.00014900658],"about_ca_topic_score_codex":0.000020247959,"about_ca_topic_score_gemma":0.00007246664,"teacher_disagreement_score":0.029971035,"about_ca_system_score_codex":0.0000151634895,"about_ca_system_score_gemma":0.00007716524,"threshold_uncertainty_score":0.3673232},"labels":[],"label_agreement":null},{"id":"W2163073911","doi":"10.1128/aac.46.5.1553-1556.2002","title":"Activities of New Fluoroquinolones, Ketolides, and Other Antimicrobials against Blood Culture Isolates of Viridans Group Streptococci from across Canada, 2000","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hôpital de l'Enfant-Jésus; Hôpital Maisonneuve-Rosemont; Calgary Laboratory Services; St. Boniface Hospital; University of Toronto; Hamilton Health Sciences; Mount Sinai Hospital; Health Sciences Centre; Université de Montréal; Trillium Health Centre","funders":"Centre Hospitalier Universitaire de Québec; Université Laval","keywords":"Telithromycin; Microbiology; Erythromycin; Gemifloxacin; Penicillin; Clindamycin; Viridans streptococci; Ciprofloxacin; Antimicrobial; Streptococcus; Blood culture; Moxifloxacin; Streptococcus pyogenes; Streptococcus pneumoniae; Streptococcaceae; Biology; Antibiotics; Bacteria; Staphylococcus aureus","score_opus":0.013362956440339921,"score_gpt":0.23238601828920502,"score_spread":0.2190230618488651,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163073911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985785,0.00034830088,0.000020246564,0.00021000473,0.00008304288,0.00018624279,0.00051321177,0.0000086971695,0.00005176849],"genre_scores_gemma":[0.9959202,0.0014115333,0.0004339883,0.0012664918,0.00011972656,0.0000012265012,0.00010260438,0.000026003785,0.00071823684],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989833,0.000037813334,0.00034176203,0.00035871353,0.000064721884,0.00021369089],"domain_scores_gemma":[0.9994165,0.000011314264,0.00021837607,0.0002367336,0.00004343033,0.000073673786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006064078,0.00020212628,0.00029887492,0.000014792867,0.00008676175,0.00004668392,0.00013861578,0.00015683565,0.00012185258],"category_scores_gemma":[0.000014071233,0.0001920745,0.000063103435,0.00005947919,0.0001404991,0.000013237644,0.00005784484,0.00006335826,4.2187327e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052041178,0.00013088476,0.027968701,0.00004019715,0.00014231434,8.0149476e-7,0.0012022699,0.0000012763185,0.9522264,0.0000017029511,0.012761964,0.005471428],"study_design_scores_gemma":[0.0012847111,0.000093669994,0.01747379,0.00006898206,0.000028494744,0.00000739495,0.00022084075,0.000016401757,0.9568564,0.00000468308,0.023710601,0.00023398909],"about_ca_topic_score_codex":0.043149013,"about_ca_topic_score_gemma":0.029417774,"teacher_disagreement_score":0.013731238,"about_ca_system_score_codex":0.000008548471,"about_ca_system_score_gemma":0.00004455541,"threshold_uncertainty_score":0.9882928},"labels":[],"label_agreement":null},{"id":"W2165826165","doi":"10.1128/jcm.01831-06","title":"<i>Catabacter hongkongensis</i>gen. nov., sp. nov., Isolated from Blood Cultures of Patients from Hong Kong and Canada","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; BC Centre for Disease Control","funders":"Centers for Disease Control and Prevention; University of Hong Kong","keywords":"Microbiology; Biology; MacConkey agar; Bacteremia; Cefotaxime; 16S ribosomal RNA; Blood culture; Chocolate agar; Agar plate; Bacteria; Antibiotics","score_opus":0.010509706250541925,"score_gpt":0.2622756155175841,"score_spread":0.2517659092670422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165826165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975701,0.000539643,0.0000547949,0.00020361204,0.000986517,0.00008181306,0.000533637,0.0000031093714,0.000026789661],"genre_scores_gemma":[0.9967584,0.000117531374,0.0011714611,0.00040262422,0.000705698,4.5704323e-7,0.0007734747,0.000013981113,0.000056352765],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99767196,0.00024906278,0.0015043841,0.00032531627,0.000060998947,0.00018829152],"domain_scores_gemma":[0.9979004,0.00020360765,0.0010470755,0.00025628187,0.0004898352,0.00010276849],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000321621,0.00016823829,0.0005363334,0.000029218088,0.0000461084,0.00002131754,0.00023189701,0.00032347735,0.00006166639],"category_scores_gemma":[0.0006500022,0.00013853025,0.00017237061,0.000045660392,0.00016753013,0.000009472439,0.00011235399,0.0002537963,0.0000015803147],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001793649,0.00017019757,0.3312332,0.0000042791653,0.00013272018,0.0000031506843,0.000007525294,0.0000013498145,0.66429025,0.0000010135753,0.0036063138,0.00037065079],"study_design_scores_gemma":[0.0022866298,0.00030999453,0.8627921,0.000036726076,0.00016460898,0.000017316985,0.000030703322,0.0000031518198,0.11911229,0.000043532276,0.014997854,0.00020509129],"about_ca_topic_score_codex":0.04544932,"about_ca_topic_score_gemma":0.10345083,"teacher_disagreement_score":0.54517794,"about_ca_system_score_codex":0.000010611285,"about_ca_system_score_gemma":0.00019560434,"threshold_uncertainty_score":0.9609071},"labels":[],"label_agreement":null},{"id":"W2166288928","doi":"10.1016/s0732-8893(99)00157-1","title":"Evaluation of the BacT/Alert® microbial detection system with FAN aerobic and FAN anaerobic bottles for culturing normally sterile body fluids other than blood","year":2000,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre","funders":"","keywords":"Anaerobic exercise; Microbiology; Blood culture; Bacteria; Human blood; Biology; Antibiotics; Physiology","score_opus":0.006940241418198672,"score_gpt":0.2146295302813625,"score_spread":0.20768928886316382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166288928","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981364,0.00042760288,0.0002927456,0.000023243441,0.00014641193,0.0007625004,0.00012442995,0.000020998381,0.000065644985],"genre_scores_gemma":[0.99942106,0.000057091373,0.000039106882,0.00006790513,0.000101162266,0.00009909756,0.00013788784,0.000016623871,0.00006006955],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893683,0.00025504612,0.00023087591,0.00035725767,0.000046156823,0.00017381656],"domain_scores_gemma":[0.9993224,0.000066722525,0.000110420544,0.00023907947,0.00019065663,0.00007068883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037164745,0.00016359657,0.00015182765,0.000031024374,0.00024423545,0.000038159193,0.000078675854,0.00012255888,0.000031474596],"category_scores_gemma":[0.00028793488,0.00012319579,0.000061786224,0.000059388964,0.00018536688,0.000012738216,0.00003600101,0.000056572495,0.0000014365081],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014546461,0.0001014921,0.029871454,0.00010083879,0.000093012684,2.677071e-7,0.00007022647,0.00003698604,0.9682758,0.00001662493,0.000027218237,0.0012606505],"study_design_scores_gemma":[0.0046194447,0.0009547756,0.34768876,0.0002978673,0.0013752207,0.0002010896,0.0001776872,0.00026889518,0.6425204,0.000027900793,0.0013183844,0.0005495457],"about_ca_topic_score_codex":0.00007408687,"about_ca_topic_score_gemma":0.00066652824,"teacher_disagreement_score":0.32575533,"about_ca_system_score_codex":0.00001928083,"about_ca_system_score_gemma":0.00007271834,"threshold_uncertainty_score":0.50237787},"labels":[],"label_agreement":null},{"id":"W2167166714","doi":"10.1128/jcm.00651-11","title":"Rapid Identification of Cryptococcus neoformans and Cryptococcus gattii by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Hospital for Sick Children; BC Centre for Disease Control; University of Toronto; Toronto Public Health","funders":"","keywords":"Cryptococcus neoformans; Cryptococcus gattii; Mass spectrometry; Cryptococcus; Matrix-assisted laser desorption/ionization; Microbiology; Cryptococcosis; Biology; Subspecies; Desorption; Chemistry; Chromatography","score_opus":0.029402161754678295,"score_gpt":0.3057768132317325,"score_spread":0.2763746514770542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167166714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99276406,0.0003143386,0.0061273803,0.00007873517,0.00039444614,0.00019538289,0.00006028257,0.0000049858527,0.000060392187],"genre_scores_gemma":[0.993858,0.0003471743,0.0052502993,0.000052363317,0.00015052421,0.0000024893718,0.00012788002,0.000013707495,0.00019756934],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99713874,0.00036209403,0.002045146,0.00023952503,0.000057825637,0.00015665109],"domain_scores_gemma":[0.9970148,0.000108613895,0.0019390269,0.00027018416,0.0005778058,0.00008957169],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001535489,0.0001326119,0.0004718153,0.00011884477,0.00004150097,0.000013003156,0.00023396176,0.0003369828,0.0002738694],"category_scores_gemma":[0.00088139647,0.00011595518,0.00020663577,0.00015721378,0.00028032286,0.00001988866,0.000057923633,0.00016719216,0.0000122161],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037374982,0.0002665327,0.013140534,0.00003800084,0.00010381439,5.6683155e-7,0.00004439348,9.789356e-7,0.9832745,0.000030815885,0.0011647748,0.001561304],"study_design_scores_gemma":[0.0014647271,0.0010719432,0.10529227,0.00003814196,0.000107237756,0.00007065579,0.00006212274,0.000023930312,0.8888767,0.00020542416,0.002628562,0.00015832197],"about_ca_topic_score_codex":0.000003641807,"about_ca_topic_score_gemma":0.000002367745,"teacher_disagreement_score":0.09439787,"about_ca_system_score_codex":0.000011627553,"about_ca_system_score_gemma":0.000086625325,"threshold_uncertainty_score":0.4728515},"labels":[],"label_agreement":null},{"id":"W2169163713","doi":"10.1016/j.tim.2012.01.002","title":"Antibiotic resistance is ancient: implications for drug discovery","year":2012,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":146,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Metagenomics; Antibiotics; Antibiotic resistance; Biology; Drug resistance; Resistance (ecology); Ecology; Profiling (computer programming); Microbiology; Biotechnology; Gene; Genetics","score_opus":0.024956661332104065,"score_gpt":0.3034520689820775,"score_spread":0.27849540764997344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169163713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99620295,0.00072668475,0.00039189737,0.001050174,0.00034596765,0.00011972719,0.00028282526,0.000012527612,0.00086725346],"genre_scores_gemma":[0.9904845,0.000020344009,0.0015036461,0.00050621544,0.00016133575,0.000017905571,0.00090211106,0.000012312146,0.006391645],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909794,0.00005264662,0.00022176135,0.00030154278,0.000010838762,0.00031524655],"domain_scores_gemma":[0.9994696,0.000023300312,0.00007493756,0.00035290277,0.000039695053,0.000039593044],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025770173,0.00010120899,0.000120795085,0.000074296615,0.00006880816,0.00001891517,0.00015840681,0.00010267762,0.000025632615],"category_scores_gemma":[0.00007308941,0.00010128638,0.00007039149,0.00013914256,0.00008258152,0.000009521723,0.000055400178,0.0000472401,0.000009908809],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025797337,0.00008159994,0.03926768,0.000010500429,0.000007717016,2.4513778e-8,0.00009243703,3.8128493e-7,0.94102216,0.0006185837,0.018018153,0.00085495925],"study_design_scores_gemma":[0.00079673465,0.00004708823,0.43280444,0.000017081748,0.000019160096,0.000013835953,0.00009131884,0.000002077885,0.3292898,0.00014469142,0.2364235,0.0003502719],"about_ca_topic_score_codex":0.000008428493,"about_ca_topic_score_gemma":0.00027167294,"teacher_disagreement_score":0.61173236,"about_ca_system_score_codex":0.00002251868,"about_ca_system_score_gemma":0.000018661282,"threshold_uncertainty_score":0.41303387},"labels":[],"label_agreement":null},{"id":"W2171608016","doi":"10.1093/jac/dkt022","title":"Antimicrobial susceptibility of 22746 pathogens from Canadian hospitals: results of the CANWARD 2007-11 study","year":2013,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton; Shared Health; University of Manitoba; Health Sciences Centre","funders":"","keywords":"Medicine; Tigecycline; Trimethoprim; Meropenem; Sulfamethoxazole; Methicillin-resistant Staphylococcus aureus; Ertapenem; Linezolid; Colistin; Broth microdilution; Piperacillin; Clindamycin; Antimicrobial; Microbiology; Amikacin; Tazobactam; Ciprofloxacin; Vancomycin; Staphylococcus aureus; Antibiotics; Pseudomonas aeruginosa; Antibiotic resistance; Imipenem; Biology; Minimum inhibitory concentration","score_opus":0.008592377622356933,"score_gpt":0.23179884496286113,"score_spread":0.2232064673405042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171608016","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99730855,0.000034881206,0.000021401864,0.0011376624,0.0007042942,0.00045859095,0.00026705317,0.0000033986844,0.00006414636],"genre_scores_gemma":[0.9982968,0.000052549825,0.00074256543,0.00040030183,0.00033079134,0.0000010111797,0.000028902841,0.000025198184,0.000121859906],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979675,0.0002153976,0.0010905545,0.0002908254,0.000184273,0.00025146868],"domain_scores_gemma":[0.99739593,0.00003213069,0.00096183846,0.0006402136,0.00083143514,0.00013844772],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006732978,0.00019675842,0.00041815915,0.0000831246,0.00008725001,0.00004806906,0.0005873764,0.00017476374,0.00014835887],"category_scores_gemma":[0.00032296163,0.00015277814,0.0003146799,0.00016998706,0.00018392608,0.000019891122,0.00006315082,0.00016214998,0.0000036909398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015390174,0.00030914176,0.110328734,0.000012726029,0.0000950678,0.0000012225353,0.0004671302,0.000012571357,0.8717972,4.5090405e-7,0.016372805,0.00044907042],"study_design_scores_gemma":[0.0020041338,0.00025456527,0.33114228,0.000056744542,0.00003920449,0.0000130929675,0.00031725763,0.0000046350797,0.66419995,0.000010643777,0.0017927717,0.00016473033],"about_ca_topic_score_codex":0.05011976,"about_ca_topic_score_gemma":0.04709511,"teacher_disagreement_score":0.22081356,"about_ca_system_score_codex":0.000052496423,"about_ca_system_score_gemma":0.00050608977,"threshold_uncertainty_score":0.9702929},"labels":[],"label_agreement":null},{"id":"W2171905872","doi":"10.1128/jcm.00128-12","title":"High Mortality Associated with Catabacter hongkongensis Bacteremia","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Bacteremia; Microbiology; Medicine; Internal medicine; Sepsis; Gastroenterology; Biology; Antibiotics","score_opus":0.05913218454231848,"score_gpt":0.35152098319327035,"score_spread":0.29238879865095185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171905872","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980483,0.00011318187,0.00013857783,0.00016680751,0.0013616758,0.0000667762,0.00003361607,0.0000060825,0.00006500104],"genre_scores_gemma":[0.9970612,0.000042231266,0.0009025206,0.00045658942,0.0011780028,9.1921333e-7,0.00015763714,0.000015094989,0.00018582316],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979402,0.00047762287,0.0010636733,0.00019057647,0.000047734862,0.0002802288],"domain_scores_gemma":[0.99804014,0.00016747756,0.00091419613,0.00028533634,0.00040959538,0.00018326042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002061989,0.00013749987,0.0004480252,0.00003455721,0.000044345215,0.000017517395,0.0002059201,0.00032505728,0.00011473627],"category_scores_gemma":[0.0021899936,0.00009995144,0.00021835999,0.00006871112,0.00018127139,0.000014228745,0.00006774622,0.00029736452,0.000016421896],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013926011,0.00023805407,0.47786978,0.0000034914258,0.000228037,0.0000016377297,0.000013739938,7.221319e-7,0.5192976,0.000009979994,0.0015501678,0.0006475555],"study_design_scores_gemma":[0.00094377634,0.0004499292,0.9633941,0.00002294407,0.000104081824,0.000119612596,0.000017280285,3.0897095e-7,0.023295267,0.0000105120325,0.01149031,0.00015188298],"about_ca_topic_score_codex":0.000009655138,"about_ca_topic_score_gemma":0.000057645026,"teacher_disagreement_score":0.49600232,"about_ca_system_score_codex":0.000016747803,"about_ca_system_score_gemma":0.000100618294,"threshold_uncertainty_score":0.40759012},"labels":[],"label_agreement":null},{"id":"W2172908530","doi":"10.1111/evj.12469","title":"Antimicrobial use and antimicrobial resistance in horses","year":2015,"lang":"en","type":"editorial","venue":"Equine Veterinary Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Antimicrobial; Antibiotic resistance; Medicine; Anti-Infective Agents; Microbiology; Biology; Antibiotics","score_opus":0.03629386016599668,"score_gpt":0.2980555968446152,"score_spread":0.2617617366786185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172908530","genre_codex":"empirical","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.71851325,0.00051434914,0.000024562733,0.00011664063,0.2804246,0.00013155957,0.00019057535,0.000012968248,0.00007153179],"genre_scores_gemma":[0.22043179,0.002218089,0.0040656407,0.00011817112,0.7671102,0.00000828163,0.0014866311,0.00014017068,0.0044209734],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99793077,0.00028357003,0.000613559,0.0005482465,0.00025295085,0.0003709287],"domain_scores_gemma":[0.9986044,0.00006005069,0.0003506728,0.00037579238,0.00043577686,0.00017330503],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008760621,0.00032966147,0.0003871885,0.00016434515,0.00013485223,0.00049317506,0.0003255126,0.00063737197,0.000017938259],"category_scores_gemma":[0.0017970294,0.00034383024,0.0001017445,0.000103470855,0.00013573853,0.000034992678,0.00031796258,0.0007058027,0.000006720977],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003930272,0.000046492325,0.0001455739,0.00006003054,0.000017405648,0.0000966223,0.00003676517,9.715176e-7,0.42795855,4.4025882e-7,0.57116485,0.00007928086],"study_design_scores_gemma":[0.0012875062,0.00076549326,0.00043542357,0.00035998176,0.000025282638,0.0003945841,0.000014374659,0.0000019328384,0.0017086834,0.000017112454,0.99452525,0.00046436107],"about_ca_topic_score_codex":0.00003316057,"about_ca_topic_score_gemma":0.00018675796,"teacher_disagreement_score":0.49808145,"about_ca_system_score_codex":0.00007337057,"about_ca_system_score_gemma":0.00044352902,"threshold_uncertainty_score":0.99990135},"labels":[],"label_agreement":null},{"id":"W2182060711","doi":"","title":"Xenophilus aerolatus Peritonitis in a six-year-old boy on maintenance eritoneal dialysis.","year":2011,"lang":"en","type":"article","venue":"PubMed","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"","keywords":"Peritonitis; Medicine; Peritoneal dialysis; Antibiotics; Hemodialysis; Renal replacement therapy; Dialysis; Antimicrobial; Complication; Intensive care medicine; Surgery; Microbiology; Biology","score_opus":0.02787728534639081,"score_gpt":0.21456932645961366,"score_spread":0.18669204111322285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2182060711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99342453,0.000038110284,0.000014773116,0.00023079412,0.000334235,0.00033730947,0.000018521809,0.000024926678,0.0055767996],"genre_scores_gemma":[0.997198,0.000028264192,0.00024294546,0.00026477888,0.00021060002,0.00041219892,0.000053618278,0.000019301542,0.0015703316],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99880576,0.00007697034,0.00025090616,0.00041035216,0.000093240815,0.00036274854],"domain_scores_gemma":[0.99935293,0.000008317165,0.0000721736,0.0004033979,0.00005531143,0.00010784992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029503938,0.0001301625,0.00015458473,0.000057272067,0.000046993253,0.00003804928,0.00018770744,0.00012518726,0.000033649878],"category_scores_gemma":[0.00035948833,0.00013273442,0.000077066405,0.00012263304,0.000049812104,0.0000060692873,0.00006819233,0.00010891896,0.000025339525],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002098351,0.0016733031,0.39546993,0.00011154749,0.00019924922,0.000096711046,0.0015054124,0.000014966394,0.44326222,0.001887892,0.007021296,0.14665915],"study_design_scores_gemma":[0.00060065935,0.0000610386,0.96956253,0.0000070587057,0.0000089789055,0.0000059926947,0.00010303706,0.00000971691,0.025443666,0.00010385869,0.003889152,0.00020432347],"about_ca_topic_score_codex":0.00031639918,"about_ca_topic_score_gemma":0.0005713274,"teacher_disagreement_score":0.57409257,"about_ca_system_score_codex":0.00003112486,"about_ca_system_score_gemma":0.00002084913,"threshold_uncertainty_score":0.54127526},"labels":[],"label_agreement":null},{"id":"W2190432664","doi":"10.1016/j.cll.2013.03.013","title":"Beyond Identification","year":2013,"lang":"en","type":"review","venue":"Clinics in Laboratory Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Clinical microbiology; Identification (biology); Matrix-assisted laser desorption/ionization; Mass spectrometry; Microbiology; Urinary system; Computational biology; Medicine; Chromatography; Biology; Chemistry; Internal medicine; Desorption","score_opus":0.06254752974660027,"score_gpt":0.3986996584485291,"score_spread":0.33615212870192884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2190432664","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005296009,0.996262,0.000029991139,0.00005507955,0.0018855435,0.00064912497,0.00004970543,0.00002215393,0.00051681465],"genre_scores_gemma":[0.00011075521,0.99545336,0.000124174,0.00017754779,0.0012724524,0.00014618356,0.0014409263,0.000052859265,0.001221734],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971815,0.00037795378,0.0014056576,0.00066932134,0.00015649365,0.00020907342],"domain_scores_gemma":[0.99788594,0.00011948361,0.00062040554,0.000981993,0.00028364535,0.00010853167],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015795375,0.00029758774,0.0008908793,0.00016013066,0.00004806318,0.00003155675,0.00041794177,0.00058369176,0.00018928353],"category_scores_gemma":[0.0025397714,0.00025322483,0.00011947045,0.00043481324,0.00019478767,0.000006125497,0.00009750082,0.00035307818,0.00022006361],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000056967306,0.000120113495,0.00013144425,0.004968325,0.000070661314,0.000004557631,0.000056285287,2.5633543e-7,0.0027050187,0.00042014493,0.02030034,0.97121716],"study_design_scores_gemma":[0.00020761567,0.0000613781,0.0000733224,0.0014857564,0.000104031424,0.0000026532139,0.00003493874,0.0000021993399,0.000021262626,0.00010529902,0.9976694,0.00023216385],"about_ca_topic_score_codex":0.0000059603835,"about_ca_topic_score_gemma":0.000018462426,"teacher_disagreement_score":0.977369,"about_ca_system_score_codex":0.000046402343,"about_ca_system_score_gemma":0.0003504971,"threshold_uncertainty_score":0.999992},"labels":[],"label_agreement":null},{"id":"W2209387386","doi":"10.1371/journal.pone.0144878","title":"A Side by Side Comparison of Bruker Biotyper and VITEK MS: Utility of MALDI-TOF MS Technology for Microorganism Identification in a Public Health Reference Laboratory","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":172,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; Université de Montréal; Institut National de Santé Publique du Québec","funders":"","keywords":"Microorganism; Microbiology; Bacteria; Biology; Matrix-assisted laser desorption/ionization; Chemistry; Genetics","score_opus":0.10851598143711907,"score_gpt":0.30764408508429764,"score_spread":0.19912810364717856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2209387386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973334,0.00077195995,0.00034909372,0.00089325465,0.000019457786,0.00041444474,0.0001698088,0.000013544167,0.0000350477],"genre_scores_gemma":[0.99725395,0.00003547821,0.0022468127,0.000055814475,0.000013073555,0.000033573073,0.00030089368,0.000010825407,0.00004958228],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885726,0.000092336384,0.0004958023,0.0003048154,0.00009494857,0.00015483491],"domain_scores_gemma":[0.99882317,0.000021498137,0.0002926722,0.00034345174,0.00044743952,0.00007176892],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061954325,0.00008758668,0.00026316152,0.000087105815,0.000027532727,0.000016153424,0.00013422634,0.000161071,0.0000059691615],"category_scores_gemma":[0.0008813541,0.000096317046,0.000016352114,0.00019670461,0.00014875998,0.000010088488,0.00006489154,0.00007416217,0.0000014620811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040412746,0.00069810444,0.051974222,0.0001573654,0.000024647918,2.937372e-8,0.00019633675,5.6169448e-8,0.94598675,0.000046037705,0.0002926984,0.00058332074],"study_design_scores_gemma":[0.00050073233,0.00019108543,0.030299038,0.00003553126,0.000011843288,3.5585145e-7,0.000414217,0.00010457796,0.9674834,0.00011629036,0.0007527932,0.00009015714],"about_ca_topic_score_codex":0.00012620789,"about_ca_topic_score_gemma":0.00037029615,"teacher_disagreement_score":0.021675183,"about_ca_system_score_codex":0.000021562168,"about_ca_system_score_gemma":0.00018998259,"threshold_uncertainty_score":0.39276952},"labels":[],"label_agreement":null},{"id":"W2229751746","doi":"10.1002/prca.201500086","title":"Recent development of mass spectrometry and proteomics applications in identification and typing of bacteria","year":2016,"lang":"en","type":"review","venue":"PROTEOMICS - CLINICAL APPLICATIONS","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Typing; Identification (biology); Bacteria; Microbiology; Clinical microbiology; Biology; Pathogenic bacteria; Computational biology; Genetics","score_opus":0.06834108535075809,"score_gpt":0.3834868695071004,"score_spread":0.3151457841563423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2229751746","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.026352236,0.79474425,0.16545543,0.000136998,0.0001269867,0.012605466,0.00041741086,0.000036820962,0.00012441851],"genre_scores_gemma":[0.0006973112,0.9014805,0.0948134,0.0000062712925,0.00011460923,0.002290465,0.0005033327,0.00003779268,0.000056301982],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99662715,0.00016884273,0.0021826576,0.00075237,0.00008990561,0.0001790834],"domain_scores_gemma":[0.99752563,0.00016161284,0.0012965351,0.00070500135,0.00020851682,0.00010271383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012764728,0.0002569634,0.00083218626,0.00016464648,0.0000828675,0.000032666445,0.00031993253,0.00043288304,0.000010344722],"category_scores_gemma":[0.00038406,0.00023127455,0.00012613647,0.00030937808,0.00025216205,0.000009461203,0.0002142129,0.00020616168,0.000006501214],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016368958,0.00021934354,0.00070740015,0.0030859832,0.000077011595,2.4956284e-8,0.00002358351,4.358485e-8,0.13824278,0.00072364026,0.000005545675,0.85689825],"study_design_scores_gemma":[0.00071092934,0.00009468463,0.005746324,0.002317755,0.00024998744,0.000007254868,0.000049828457,0.000009600185,0.019455949,0.0017993614,0.9687856,0.00077275565],"about_ca_topic_score_codex":0.0000019848583,"about_ca_topic_score_gemma":0.000010284149,"teacher_disagreement_score":0.96878004,"about_ca_system_score_codex":0.000044959288,"about_ca_system_score_gemma":0.00035028488,"threshold_uncertainty_score":0.9431102},"labels":[],"label_agreement":null},{"id":"W2236690878","doi":"10.1155/2014/802481","title":"Bacteremia Caused by <i>Eggerthella lenta</i> in an Elderly Man with a Gastrointestinal Malignancy: A Case Report","year":2014,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Bacteremia; Malignancy; Medicine; Internal medicine; Microbiology; Biology","score_opus":0.004499188471427111,"score_gpt":0.21653456650785405,"score_spread":0.21203537803642694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2236690878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99881554,0.00021055233,0.00039209664,0.00028737425,0.00012441605,0.000077972276,0.00004082444,0.0000041630706,0.00004706512],"genre_scores_gemma":[0.9990405,0.000012854721,0.00006189863,0.0005743575,0.00015165673,0.0000028549077,0.00010786904,0.000012633113,0.000035403704],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9989183,0.00017022956,0.00036413077,0.00023989376,0.00003993796,0.00026752756],"domain_scores_gemma":[0.99865186,0.0000276691,0.0001804895,0.00016082027,0.00014121637,0.0008379217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029670575,0.00012912597,0.00020874501,0.00008720601,0.000084284475,0.00004083615,0.00009733434,0.00010852747,0.000079673344],"category_scores_gemma":[0.0004925636,0.00010717705,0.000046177833,0.000059044134,0.00022246734,0.000009050272,0.000013741737,0.00015749852,8.85534e-7],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008321442,0.00012025988,0.71271557,0.00003680136,0.000033909066,0.010546089,0.00006503207,0.000002430932,0.26918995,0.000018237195,0.0017363065,0.005452242],"study_design_scores_gemma":[0.005265456,0.006771223,0.10219713,0.00051337417,0.00013549846,0.8529036,0.00036542752,0.000033501994,0.0025768664,0.00010398774,0.028424405,0.00070952193],"about_ca_topic_score_codex":0.0024624304,"about_ca_topic_score_gemma":0.08404422,"teacher_disagreement_score":0.8423575,"about_ca_system_score_codex":0.000035998703,"about_ca_system_score_gemma":0.00069266174,"threshold_uncertainty_score":0.9326696},"labels":[],"label_agreement":null},{"id":"W2255217962","doi":"10.1186/s12879-016-1360-2","title":"Accuracy of commercially available c-reactive protein rapid tests in the context of undifferentiated fevers in rural Laos","year":2015,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Naval Medical Research Center; Grand Challenges Canada; U.S. Navy; Wellcome Trust; Wellcome","keywords":"Medicine; Point-of-care testing; Kappa; Context (archaeology); Cohen's kappa; C-reactive protein; Quantitative assessment; Tropical medicine; Internal medicine; Immunology; Pathology; Statistics; Biology; Mathematics","score_opus":0.03195661283336131,"score_gpt":0.27912093511742975,"score_spread":0.24716432228406843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2255217962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99874306,0.00015183908,0.000015373833,0.000020671654,0.000060437196,0.0004895141,0.000038091825,0.000008679695,0.00047232947],"genre_scores_gemma":[0.9996787,0.000006674533,0.000015004676,0.000046191788,0.000026577953,0.00004844067,0.00013071799,0.000007665419,0.0000400383],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990527,0.00028576417,0.00028207086,0.00014689537,0.000100041754,0.00013255043],"domain_scores_gemma":[0.99927413,0.000083598716,0.00018440814,0.00025999369,0.00015528161,0.00004259365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025176787,0.00009520535,0.00015825979,0.000060653943,0.000024332685,0.000018437566,0.00014279358,0.00006304797,0.000032229273],"category_scores_gemma":[0.0016182584,0.00007915568,0.00005965755,0.0001648915,0.00008970656,0.000011201366,0.0000493699,0.000057943915,0.000005910672],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020335779,0.00057999924,0.7141331,0.000051884177,0.000014528994,6.0927647e-7,0.00031623762,0.000007939938,0.28362253,0.000055087552,0.00030657285,0.00070815213],"study_design_scores_gemma":[0.0026988909,0.00032361163,0.9283875,0.00008681946,0.000028161781,0.0000030862095,0.0020192335,0.00005422317,0.06577659,0.00018854279,0.00025333662,0.00017998538],"about_ca_topic_score_codex":0.0014350927,"about_ca_topic_score_gemma":0.0040181256,"teacher_disagreement_score":0.21784595,"about_ca_system_score_codex":0.000026588239,"about_ca_system_score_gemma":0.00023848987,"threshold_uncertainty_score":0.3227875},"labels":[],"label_agreement":null},{"id":"W2264248121","doi":"10.1039/c6ay00063k","title":"Analysis of bacteria using zero volt paper spray","year":2016,"lang":"en","type":"article","venue":"Analytical Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"McMaster University; National Science Foundation","keywords":"Volt; Bacteria; Zero (linguistics); Materials science; Chemistry; Analytical Chemistry (journal); Chromatography; Physics; Biology; Genetics; Voltage; Quantum mechanics","score_opus":0.05684998022353417,"score_gpt":0.3995202057018963,"score_spread":0.3426702254783621,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2264248121","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.76253915,0.000023038507,0.23668273,0.00017084552,0.00009768466,0.00004385716,0.000014969806,0.00000722884,0.0004205251],"genre_scores_gemma":[0.9181235,0.00001043095,0.08090857,0.00013023282,0.00007156284,0.0000016954856,0.000019920371,0.000010439264,0.000723687],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987047,0.00033701427,0.00036724407,0.00033413342,0.00008685045,0.00017010528],"domain_scores_gemma":[0.9990118,0.00013164809,0.00011095424,0.00049573794,0.00015794978,0.00009187566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009111815,0.00010498652,0.00027995513,0.000105190986,0.000033823173,0.000018395369,0.00014881286,0.00012335407,0.0006789024],"category_scores_gemma":[0.0015742525,0.00007418283,0.00024120958,0.0003790353,0.000113887276,0.0000068711006,0.00008329448,0.000033535503,0.000006262445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002457172,0.0000340015,0.012125306,0.0000050524673,0.00038797082,2.793493e-7,0.000007358722,0.0000061581286,0.9754859,0.000351837,0.00006268633,0.011508873],"study_design_scores_gemma":[0.0004959329,0.00013863252,0.182029,0.000027917733,0.00199993,0.000003651155,0.000027568858,0.0047136354,0.79116166,0.0004956716,0.018485771,0.00042061732],"about_ca_topic_score_codex":0.000028092465,"about_ca_topic_score_gemma":0.000014420006,"teacher_disagreement_score":0.18432423,"about_ca_system_score_codex":0.000013937594,"about_ca_system_score_gemma":0.000036544563,"threshold_uncertainty_score":0.7433505},"labels":[],"label_agreement":null},{"id":"W2277060185","doi":"10.1093/ofid/ofu052.28","title":"162Antimicrobial Stewardship in the Micro Lab: Selective Susceptibility Reporting and Impact on Ciprofloxacin Utilization in a Hospital Setting","year":2014,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St Joseph's Health Centre","funders":"","keywords":"Medicine; Ciprofloxacin; Antimicrobial stewardship; Stewardship (theology); Pathogenic organism; Piperacillin/tazobactam; Intensive care medicine; Environmental health; Emergency medicine; Microbiology; Antibiotics; Pseudomonas aeruginosa; Antibiotic resistance","score_opus":0.015996705745682818,"score_gpt":0.30775577179589203,"score_spread":0.29175906605020924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2277060185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977688,0.000024808985,0.000046681802,0.00028001133,0.00009115673,0.0007701596,0.0000261645,0.000016597154,0.0009755846],"genre_scores_gemma":[0.99933857,0.0000067426067,0.00003241707,0.00029406536,0.00006163175,0.00004867955,0.00017747798,0.000016392374,0.000024009372],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982215,0.00041349034,0.00050554634,0.00050347863,0.0000837011,0.00027228013],"domain_scores_gemma":[0.999067,0.00007918273,0.00036836023,0.00034637848,0.00008492532,0.000054172706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001192902,0.00016811036,0.00019714015,0.000065716915,0.00017286383,0.00027942556,0.00019505266,0.0000915646,0.000011830344],"category_scores_gemma":[0.002989664,0.00013430692,0.0000703006,0.00022055928,0.00006168514,0.000028323138,0.00017084592,0.000127403,0.000002879459],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009604427,0.00037522486,0.9217966,0.000021417643,0.000010808477,0.0000016310423,0.00024449616,0.00005316925,0.07428602,0.000049586895,0.00045200172,0.0026129882],"study_design_scores_gemma":[0.0007911765,0.00054076815,0.98693097,0.000048758448,0.000012541153,0.000008461185,0.00040923912,0.00017954172,0.010303383,0.00043661616,0.0001291625,0.00020938409],"about_ca_topic_score_codex":0.0006427848,"about_ca_topic_score_gemma":0.0022184986,"teacher_disagreement_score":0.065134354,"about_ca_system_score_codex":0.000063788684,"about_ca_system_score_gemma":0.000094323565,"threshold_uncertainty_score":0.5476877},"labels":[],"label_agreement":null},{"id":"W2283781183","doi":"10.1093/ofid/ofv133.819","title":"Direct Rapid Identification of Bacteria From Positive Blood Cultures Using the Bruker MALDI Biotyper and Serum Separator Tubes","year":2015,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Separator (oil production); Pathogenic organism; Microbiology; Bacteria; Biology","score_opus":0.016533062064020457,"score_gpt":0.29019429001648794,"score_spread":0.2736612279524675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2283781183","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99767625,0.00059413747,0.00004022005,0.00010905067,0.00021448615,0.00034864107,0.0004679591,0.000014452416,0.0005348182],"genre_scores_gemma":[0.9991183,0.000036312213,0.000067925605,0.00015688273,0.00008869218,0.000018029976,0.00036170625,0.000015006284,0.00013714311],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990794,0.00015732579,0.00023935207,0.0003110864,0.00008206044,0.00013078298],"domain_scores_gemma":[0.9992359,0.00002270396,0.00011924355,0.000331235,0.00019697264,0.00009394015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016393073,0.00012597501,0.00014842518,0.00002102955,0.00016809058,0.00026710966,0.00019072674,0.00007341867,0.000046500878],"category_scores_gemma":[0.00025185407,0.000097095195,0.00005531912,0.000081134174,0.00011484858,0.00003340932,0.00023443496,0.000034444696,0.000004619075],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007448879,0.00013696641,0.15307572,0.0000073421575,0.00011522358,4.421244e-7,0.00012347837,0.0000072412463,0.84528583,0.0000462771,0.0007682523,0.00035874898],"study_design_scores_gemma":[0.000922882,0.00018315656,0.3690633,0.000030475096,0.00025715298,0.000012803868,0.00062740815,0.00008510088,0.62669706,0.0002622146,0.0015931032,0.0002653637],"about_ca_topic_score_codex":0.0006118862,"about_ca_topic_score_gemma":0.00014425987,"teacher_disagreement_score":0.21858875,"about_ca_system_score_codex":0.000012178062,"about_ca_system_score_gemma":0.000085092644,"threshold_uncertainty_score":0.39594272},"labels":[],"label_agreement":null},{"id":"W2284132137","doi":"10.1099/jmmcr.0.005024","title":"Enteroccocus pallens as a potential novel human pathogen: three cases of spontaneous bacterial peritonitis","year":2016,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal; Cégep de Rimouski; Jewish General Hospital; Institut National de Santé Publique du Québec","funders":"","keywords":"Spontaneous bacterial peritonitis; Microbiology; Biology; Pathogen; Human pathogen; Enterococcus; Virulence factor; Virulence; Antimicrobial; Antibiotics; Cirrhosis; Bacteria; Gene; Medicine; Genetics; Internal medicine","score_opus":0.01775381441321259,"score_gpt":0.2623612881910017,"score_spread":0.2446074737777891,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2284132137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983041,0.00004399267,0.0003166472,0.00006726321,0.00060772727,0.00021684343,0.00018770815,0.000026071657,0.00022962266],"genre_scores_gemma":[0.99858207,0.000011132316,0.00023752371,0.000024767785,0.00044148625,0.000017879087,0.00018901052,0.000026532392,0.00046957916],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.9985239,0.000044806908,0.00056856574,0.00049035664,0.00014781198,0.00022455161],"domain_scores_gemma":[0.99871933,0.000017269167,0.00032702443,0.0006268173,0.00019610552,0.00011343277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021194654,0.00017289807,0.00020827162,0.00004101213,0.000121219266,0.000040522893,0.00006236616,0.0001552996,0.00035787962],"category_scores_gemma":[0.000367612,0.00014231043,0.00016291515,0.000036819692,0.00010401221,0.00000797781,0.00011540341,0.00004332164,0.00000625558],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007987923,0.00012603968,0.0014415832,0.000017211221,0.00003303538,0.070684455,0.000028653127,3.047617e-7,0.9255874,0.000012088655,0.000085124026,0.0019042104],"study_design_scores_gemma":[0.00069950864,0.00053518376,0.0057039275,0.00006302724,0.000058031488,0.7368501,0.000081308965,0.000002210382,0.24684432,0.000061246676,0.008753121,0.00034802052],"about_ca_topic_score_codex":0.00035199462,"about_ca_topic_score_gemma":0.0010976221,"teacher_disagreement_score":0.67874306,"about_ca_system_score_codex":0.000023114617,"about_ca_system_score_gemma":0.000092297734,"threshold_uncertainty_score":0.58032507},"labels":[],"label_agreement":null},{"id":"W2284974270","doi":"10.1128/jcm.02778-15","title":"Automated Scoring of Chromogenic Media for Detection of Methicillin-Resistant Staphylococcus aureus by Use of WASPLab Image Analysis Software","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton General Hospital; Université Laval","funders":"","keywords":"Chromogenic; Staphylococcus aureus; Agar; Microbiology; Methicillin-resistant Staphylococcus aureus; Hue; Biology; Digital image; Medicine; Bacteria; Artificial intelligence; Image processing; Chromatography; Chemistry; Computer science","score_opus":0.07618158355577812,"score_gpt":0.3624883808681054,"score_spread":0.28630679731232733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2284974270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98658043,0.0003806647,0.01213521,0.000037263886,0.00040490384,0.00012479343,0.00032869485,0.0000069929433,0.0000010544171],"genre_scores_gemma":[0.98771554,0.000077481855,0.011914812,0.000025995172,0.00011291912,0.0000015430228,0.00012541992,0.000011362125,0.000014941012],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99703443,0.00042431022,0.0020980646,0.00022250056,0.00007225467,0.00014846065],"domain_scores_gemma":[0.9950422,0.00065449846,0.0021923536,0.00029380163,0.0017107417,0.00010640134],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0024303787,0.00012051591,0.00081173086,0.00014499041,0.00002032319,0.000008074143,0.00023253779,0.00035864895,0.000008982539],"category_scores_gemma":[0.010860384,0.00010192741,0.00058460014,0.00022597282,0.00027356972,0.000011536541,0.00006486918,0.00016031052,3.7115956e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009530442,0.00018930428,0.005396344,0.0000528685,0.00074941915,5.104299e-7,0.00003742981,0.000068800924,0.9913871,0.0000013060893,0.00041990317,0.00074394816],"study_design_scores_gemma":[0.0013157002,0.0011919597,0.008422762,0.000030403668,0.0005604691,0.0000034149114,0.000057716396,0.0001542115,0.9868836,0.000028225586,0.0012501337,0.00010145105],"about_ca_topic_score_codex":0.00004174819,"about_ca_topic_score_gemma":0.00010727038,"teacher_disagreement_score":0.008430006,"about_ca_system_score_codex":0.000016916021,"about_ca_system_score_gemma":0.00022512433,"threshold_uncertainty_score":0.9974716},"labels":[],"label_agreement":null},{"id":"W2287706102","doi":"10.1128/jcm.02709-15","title":"Verification of a Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Method for Diagnostic Identification of High-Consequence Bacterial Pathogens","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Mass spectrometry; Identification (biology); Matrix-assisted laser desorption/ionization; Chromatography; Time-of-flight mass spectrometry; Ionization; Microbiology; Chemistry; Desorption; Biology","score_opus":0.039381746910766575,"score_gpt":0.3570639856454459,"score_spread":0.3176822387346793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2287706102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89183635,0.000093938725,0.10677345,0.0001523401,0.00071673054,0.00022100504,0.00019969435,0.0000032013024,0.000003300029],"genre_scores_gemma":[0.9390677,0.000072275674,0.0600894,0.000019232535,0.00028686947,0.00000445065,0.00038568492,0.000012711759,0.00006167521],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965128,0.00066740526,0.0023795501,0.00024530242,0.00007294634,0.00012201199],"domain_scores_gemma":[0.99421245,0.0007080213,0.0029850225,0.00031588753,0.0016996103,0.00007901031],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0032214404,0.00011397995,0.00056669913,0.00012625233,0.0000221618,0.000010214531,0.00025081995,0.0003147575,0.00003230025],"category_scores_gemma":[0.012047637,0.00010470001,0.00025586426,0.00018982198,0.00018718367,0.000015574311,0.000034491688,0.00009671293,0.0000034265208],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008026443,0.00025913154,0.0022236118,0.000057576675,0.00009482678,5.1786543e-7,0.000027262742,0.000058522564,0.9953063,0.000070455266,0.00023913757,0.0008600233],"study_design_scores_gemma":[0.0017008759,0.0010134884,0.02945932,0.000044454875,0.0001586186,0.000073231466,0.00004268867,0.000083723906,0.9663774,0.000492382,0.0004465482,0.00010729604],"about_ca_topic_score_codex":0.000007746133,"about_ca_topic_score_gemma":0.0000045580364,"teacher_disagreement_score":0.047231358,"about_ca_system_score_codex":0.000024326984,"about_ca_system_score_gemma":0.0002996543,"threshold_uncertainty_score":0.9962743},"labels":[],"label_agreement":null},{"id":"W2294575478","doi":"10.3389/fmicb.2016.00181","title":"Mass Spectrometry-Based Bacterial Proteomics: Focus on Dermatologic Microbial Pathogens","year":2016,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Microbiology; Biology; Proteomics; Impetigo; Skin infection; Antibiotic resistance; Proteome; Virulence; Staphylococcus aureus; Microbiome; Cellulitis; Antibiotics; Immunology; Bacteria; Bioinformatics","score_opus":0.01650414025019065,"score_gpt":0.26114705853927095,"score_spread":0.2446429182890803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2294575478","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0039374563,0.97167265,0.011943803,0.00021435463,0.007074599,0.002713628,0.002056892,0.00008259553,0.0003040312],"genre_scores_gemma":[0.00045401132,0.9501298,0.04245304,0.0002469832,0.0011619797,0.0002720184,0.004758667,0.00015466707,0.0003688463],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962053,0.0008563176,0.0009643335,0.0012427343,0.000046375866,0.00068495376],"domain_scores_gemma":[0.9983751,0.000053569387,0.00054308,0.00086984865,0.00006484835,0.00009351586],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00043972768,0.0006461936,0.0015229618,0.0004391755,0.00008717629,0.000055632387,0.0007139569,0.001395552,0.00013071946],"category_scores_gemma":[0.00032362266,0.0005251,0.000543942,0.00022250866,0.00025512965,0.0000039302045,0.0001348239,0.00038589988,0.0001499148],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016197364,0.00012426471,0.00012378382,0.0009963812,0.00013111922,0.000022319195,0.000005234302,4.0537535e-7,0.9201757,0.000018258646,0.012130655,0.06610994],"study_design_scores_gemma":[0.0009257417,0.00025626924,0.0000066327025,0.0013693474,0.000089908935,0.000095028154,0.000005409122,9.708439e-7,0.023023097,0.00010903224,0.9733606,0.00075798825],"about_ca_topic_score_codex":0.000004206716,"about_ca_topic_score_gemma":0.0000151965505,"teacher_disagreement_score":0.9612299,"about_ca_system_score_codex":0.00022805248,"about_ca_system_score_gemma":0.00043717705,"threshold_uncertainty_score":0.9999008},"labels":[],"label_agreement":null},{"id":"W2297505554","doi":"10.3389/fmicb.2016.00068","title":"Using “Omics” and Integrated Multi-Omics Approaches to Guide Probiotic Selection to Mitigate Chytridiomycosis and Other Emerging Infectious Diseases","year":2016,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Deutsche Forschungsgemeinschaft; Deutscher Akademischer Austauschdienst; National Science Foundation","keywords":"Biology; Chytridiomycosis; Metagenomics; Computational biology; Microbiome; In silico; Biotechnology; Bioinformatics; Microbiology; Pathogen; Genetics; Gene","score_opus":0.06559642701546813,"score_gpt":0.3025563235199275,"score_spread":0.23695989650445937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2297505554","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.05697928,0.899616,0.03841438,0.00008022388,0.0014005309,0.0026938631,0.00073642714,0.00006176781,0.000017542676],"genre_scores_gemma":[0.0038740453,0.92895126,0.06361334,0.00043035403,0.00055202015,0.00029244134,0.0011786686,0.0002453555,0.0008625356],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978794,0.00031886596,0.000558159,0.0008735211,0.00002011424,0.00034996684],"domain_scores_gemma":[0.99933296,0.000020594909,0.00020644083,0.00025773645,0.000052621286,0.00012965043],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027918367,0.00038004902,0.0008092613,0.00035364908,0.000097779084,0.00006206272,0.00016343402,0.00044649214,0.0000035784958],"category_scores_gemma":[0.0003063477,0.00032914893,0.00010776444,0.0002599131,0.0001193273,0.0000065182803,0.00020149854,0.00014635207,0.0000042785387],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007417131,0.0001308186,0.01337133,0.0025012048,0.00040023122,0.0000019666275,0.00018943434,0.00001975735,0.5099405,0.000013755567,0.0021110987,0.47124577],"study_design_scores_gemma":[0.00062083325,0.00013945867,0.00010390109,0.0019163737,0.00025285708,0.00015300162,0.000084815714,0.00012232614,0.0031484102,0.000020419147,0.99258137,0.00085626316],"about_ca_topic_score_codex":0.00006233619,"about_ca_topic_score_gemma":0.00011580124,"teacher_disagreement_score":0.99047023,"about_ca_system_score_codex":0.00018298758,"about_ca_system_score_gemma":0.000154893,"threshold_uncertainty_score":0.9999161},"labels":[],"label_agreement":null},{"id":"W2298378897","doi":"10.1021/acs.analchem.5b03614","title":"Imprint Desorption Electrospray Ionization Mass Spectrometry Imaging for Monitoring Secondary Metabolites Production during Antagonistic Interaction of Fungi","year":2015,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Chemistry; Mass spectrometry; Potato dextrose agar; Mass spectrometry imaging; Agar plate; Desorption electrospray ionization; Desorption; Chromatography; Agar; Chemical ionization; Ionization; Biology; Ion; Bacteria","score_opus":0.018281974122117222,"score_gpt":0.28371581083984815,"score_spread":0.2654338367177309,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2298378897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883562,0.0002669203,0.010647335,0.00007878084,0.0002521844,0.00013371224,0.0000094494235,0.000028585218,0.0002268798],"genre_scores_gemma":[0.9951679,0.00003238852,0.0034257208,0.0000053036515,0.0007419852,0.000016333619,0.00022760607,0.000019654039,0.00036311435],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891555,0.000026442638,0.00034890958,0.00038320658,0.00012754055,0.00019834966],"domain_scores_gemma":[0.9990782,0.000017399652,0.00016598703,0.00026396586,0.00037877276,0.00009565438],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031517516,0.00013108795,0.00015659073,0.000042423602,0.00006846188,0.00005352369,0.00009735102,0.00008698339,0.000020341147],"category_scores_gemma":[0.00087193894,0.00014489461,0.00009207401,0.00015753502,0.000047217694,0.000023861407,0.000037554433,0.00011131722,0.000002244042],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011027721,0.000049823277,0.013475577,0.000132299,0.0000355968,2.9020424e-7,0.000017842649,0.000039320264,0.9853389,0.000019876352,0.000024819527,0.0007553451],"study_design_scores_gemma":[0.0003088415,0.000024544912,0.0067730336,0.000019165003,0.000056885074,0.000015936876,0.00016568384,0.00158184,0.99058574,0.00018157093,0.00014744632,0.00013932718],"about_ca_topic_score_codex":0.000007127883,"about_ca_topic_score_gemma":7.127795e-7,"teacher_disagreement_score":0.007221615,"about_ca_system_score_codex":0.00008984651,"about_ca_system_score_gemma":0.000075815056,"threshold_uncertainty_score":0.59086305},"labels":[],"label_agreement":null},{"id":"W2298601229","doi":"","title":"Bloodstream Infections (BSI) Surveillance in the Province of Quebec (SPIN-BACTOT): The First Year Experience","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Montreal Children's Hospital","funders":"","keywords":"Geography; Bloodstream infection; Medicine; Environmental health; Intensive care medicine","score_opus":0.011297197567570935,"score_gpt":0.25434186494724437,"score_spread":0.24304466737967342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2298601229","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99840033,0.0000770236,0.00003530981,0.0003271886,0.00009923091,0.00018721656,0.000015453274,0.000011234715,0.000847038],"genre_scores_gemma":[0.999377,0.0000261587,0.000084890446,0.00010936956,0.00013173821,0.000025000292,0.000015101125,0.0000073177935,0.00022342532],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991298,0.00013256585,0.0002497604,0.00021571486,0.000108528155,0.0001636878],"domain_scores_gemma":[0.9993077,0.00009803928,0.00011974987,0.00035535466,0.000096901065,0.000022274871],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042143316,0.00008848669,0.00009087396,0.000019491525,0.00022739272,0.000022868931,0.0002632469,0.00005836423,0.000008926002],"category_scores_gemma":[0.0010603633,0.00006059201,0.00004829097,0.00015713752,0.00017571342,0.000008375735,0.00006436383,0.00009635273,0.0000042830793],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030077443,0.0002525173,0.89543,0.00003765385,0.000013834899,0.0000045740235,0.006071256,0.00014621396,0.09551791,0.00011936038,0.0014170398,0.00095952395],"study_design_scores_gemma":[0.00045995478,0.00022378376,0.9223402,0.00007238421,0.0000072018556,0.000045316177,0.009448083,0.00007284355,0.04380028,0.000014914861,0.02321156,0.0003034934],"about_ca_topic_score_codex":0.0025293094,"about_ca_topic_score_gemma":0.022369117,"teacher_disagreement_score":0.051717635,"about_ca_system_score_codex":0.000009933487,"about_ca_system_score_gemma":0.000087509456,"threshold_uncertainty_score":0.9954701},"labels":[],"label_agreement":null},{"id":"W2301880414","doi":"10.1016/j.mimet.2016.02.014","title":"Corrigendum to “Effect of gamma radiation on the identification of bacterial pathogens by MALDI-TOF MS” [J. Microbiol. Methods 92 (2013) 132–134]","year":2016,"lang":"en","type":"erratum","venue":"Journal of Microbiological Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Identification (biology); Microbiology; Computational biology; Biology; Chemistry; Botany","score_opus":0.026996898762390673,"score_gpt":0.3453965017193596,"score_spread":0.3183996029569689,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2301880414","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.635885,0.0099303,0.21088378,0.0037880503,0.12760316,0.0046585402,0.005901429,0.00006312351,0.0012866303],"genre_scores_gemma":[0.2542142,0.020520648,0.5407258,0.002845587,0.02985321,0.0004001487,0.0125985015,0.00093427236,0.13790758],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98954105,0.006786991,0.0024254161,0.0006688514,0.00018567921,0.000392031],"domain_scores_gemma":[0.99357766,0.0007597006,0.0037977633,0.00089427916,0.0008072879,0.00016329404],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0111591155,0.0005192071,0.0012343652,0.0002083401,0.00011099755,0.000063891275,0.0010728181,0.0012131399,0.000431362],"category_scores_gemma":[0.007853697,0.00030264494,0.0007888721,0.00024343267,0.00027783558,0.000012545728,0.00023475183,0.0006375792,0.000013646283],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005105967,0.00010095585,0.00002595462,0.00006590169,0.0001535899,6.473698e-7,0.000027787331,0.0000010273301,0.6957174,0.0000055686155,0.27214867,0.031241896],"study_design_scores_gemma":[0.00037880428,0.0015418169,0.00038229945,0.0001374129,0.00013257278,0.000027449043,0.000012494999,0.0000023025789,0.6633712,0.000033728513,0.3337501,0.00022979859],"about_ca_topic_score_codex":0.000009803865,"about_ca_topic_score_gemma":0.0000025904,"teacher_disagreement_score":0.38167077,"about_ca_system_score_codex":0.0000951823,"about_ca_system_score_gemma":0.00019411233,"threshold_uncertainty_score":0.99994254},"labels":[],"label_agreement":null},{"id":"W2302332383","doi":"10.2196/mhealth.5041","title":"Design of a Tablet Computer App for Facilitation of a Molecular Blood Culture Test in Clinical Microbiology and Preliminary Usability Evaluation","year":2016,"lang":"en","type":"article","venue":"JMIR mhealth and uhealth","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Aalborg Universitetshospital; Aalborg Universitet; Højteknologifonden","keywords":"Usability; Facilitation; Test (biology); Clinical microbiology; Medicine; Computer science; Human–computer interaction; Medical physics; Psychology; Microbiology; Biology","score_opus":0.06504904424353701,"score_gpt":0.3876491630306198,"score_spread":0.3226001187870828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2302332383","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9854051,0.0004203313,0.012710242,0.00028308708,0.000048492722,0.0010431918,0.00008266983,0.0000040040936,0.00000288051],"genre_scores_gemma":[0.992035,0.00016193916,0.007493117,0.00010018482,0.000035871726,0.0000659422,0.000090870344,0.0000051182265,0.0000120110835],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99850565,0.00037999338,0.00058694126,0.00033512214,0.000042050473,0.0001502369],"domain_scores_gemma":[0.9990795,0.00022530019,0.00023283437,0.0001762446,0.00021118966,0.00007489812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019508591,0.0000831908,0.00021409706,0.000034255787,0.000031247284,0.000003763916,0.000050157825,0.00016309567,0.0000026699443],"category_scores_gemma":[0.0007799273,0.00006435152,0.000029124516,0.00005109324,0.00015280055,0.0000058030073,0.00003027047,0.00004391139,1.7640454e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048063535,0.00032738585,0.037670124,0.0007079873,0.000009151356,5.7457367e-8,0.00025779154,0.0000067479095,0.93415296,0.00003219422,0.00012450635,0.026230471],"study_design_scores_gemma":[0.013785504,0.017616898,0.87793165,0.00035687527,0.00021423107,0.000037010315,0.00031057541,0.0046694926,0.08232621,0.0015263612,0.00072501757,0.000500176],"about_ca_topic_score_codex":0.000015783493,"about_ca_topic_score_gemma":0.000016505011,"teacher_disagreement_score":0.8518267,"about_ca_system_score_codex":0.000011615386,"about_ca_system_score_gemma":0.00018834273,"threshold_uncertainty_score":0.2624179},"labels":[],"label_agreement":null},{"id":"W2309134523","doi":"10.1093/ofid/ofu052.283","title":"417Comparison of ESBL rates and susceptibility of E. coli from IAI in the USA, Canada, and Mexico 2009-2013","year":2014,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pathogenic organism; Cefepime; Gerontology; Demography; Microbiology; Imipenem; Antibiotics; Antibiotic resistance; Biology","score_opus":0.011808149479222468,"score_gpt":0.264496271624946,"score_spread":0.2526881221457235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2309134523","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99880296,0.00020197786,0.000019625857,0.0001396055,0.00005469798,0.000260964,0.00014335934,0.0000018886448,0.00037492492],"genre_scores_gemma":[0.9995839,0.000031564636,0.000025929654,0.00019438173,0.000017276507,0.000014401382,0.00009445489,0.0000053514946,0.000032720134],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991684,0.00016927425,0.00024240202,0.00023466178,0.00007269354,0.00011255869],"domain_scores_gemma":[0.99936455,0.000088943176,0.00012752687,0.00029627827,0.00006944476,0.00005325423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022139378,0.00008986883,0.00018148698,0.000016545971,0.00006648386,0.00005411421,0.00017091398,0.000045305405,0.000050950028],"category_scores_gemma":[0.00031180374,0.00007274245,0.000024291046,0.00005906061,0.00012162779,0.000010418348,0.00015093015,0.000038133294,4.6725123e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003723531,0.000103894796,0.95518994,0.000020122723,0.000013178729,1.0238411e-7,0.000039241007,0.0000070896085,0.042305272,0.000076735436,0.0015560755,0.00065110094],"study_design_scores_gemma":[0.0004133337,0.00011562263,0.9869055,0.000013874204,0.000018680208,7.9565467e-7,0.00019050475,0.0000753941,0.010981517,0.0004147461,0.00078476756,0.000085221094],"about_ca_topic_score_codex":0.60100615,"about_ca_topic_score_gemma":0.9379303,"teacher_disagreement_score":0.33692414,"about_ca_system_score_codex":0.0000093431545,"about_ca_system_score_gemma":0.00009813233,"threshold_uncertainty_score":0.40165082},"labels":[],"label_agreement":null},{"id":"W2311909499","doi":"","title":"A Comparison of an In-House and Commercial Assay for the Direct Detection of MRSA in Positive Blood Cultures","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Virology; Blood culture; Microbiology; Medicine; Biology; Antibiotics","score_opus":0.01991668575741851,"score_gpt":0.30845622205354933,"score_spread":0.2885395362961308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2311909499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99940157,0.00018790222,0.000073350006,0.000023845787,0.000038589522,0.00018001595,0.000022471715,0.0000049716327,0.00006728652],"genre_scores_gemma":[0.99948436,0.000015747812,0.00039614504,0.000015623978,0.00005135144,0.000008668474,0.000013794974,0.000006881379,0.0000074078625],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993727,0.00012471895,0.00023246816,0.00013946158,0.000045307148,0.0000853475],"domain_scores_gemma":[0.99959135,0.00009653374,0.000110320776,0.00009325978,0.000090523405,0.000018035746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004173847,0.000056623412,0.0001272576,0.000026789741,0.000066335466,0.000005630525,0.000060389,0.00006297426,3.7380323e-7],"category_scores_gemma":[0.00059505197,0.000047001908,0.000025683801,0.000059665428,0.00006557463,0.0000057772627,0.000027328968,0.000049821898,4.87454e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010857462,0.00011149966,0.10166297,0.000015783455,0.000008056842,1.9899831e-7,0.0019767843,0.000041995187,0.89215237,0.000002413228,0.000006980266,0.0039123716],"study_design_scores_gemma":[0.0003996483,0.00019893843,0.30820608,0.000021202033,0.000010368274,0.0000016187458,0.0012819392,0.0003861017,0.689378,0.000003802392,0.000059883198,0.00005240459],"about_ca_topic_score_codex":0.0004588862,"about_ca_topic_score_gemma":0.0025422354,"teacher_disagreement_score":0.2065431,"about_ca_system_score_codex":0.00000389456,"about_ca_system_score_gemma":0.000018294304,"threshold_uncertainty_score":0.19166821},"labels":[],"label_agreement":null},{"id":"W2313735383","doi":"10.1155/2016/5493675","title":"The Performance of Direct Disk Diffusion for Community Acquired Bacteremia due to Gram-Negative Bacilli and Its Impact on Physician Treatment Decisions","year":2016,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Bacteremia; Medicine; Bacilli; Antibiotics; Sepsis; Observational study; Blood culture; Intensive care medicine; Internal medicine; Microbiology; Bacteria; Biology","score_opus":0.01094254208188819,"score_gpt":0.2660722296919751,"score_spread":0.2551296876100869,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2313735383","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986269,0.0002671035,0.00003669714,0.00041660797,0.00016841282,0.00015993443,0.00030829292,0.00000155917,0.000014505258],"genre_scores_gemma":[0.99920213,0.0004652425,0.000006671972,0.00017346755,0.00009324324,0.00000656693,0.000018084918,0.0000060578736,0.000028552357],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99932474,0.0001591291,0.00021776168,0.00010414527,0.000027668086,0.00016654133],"domain_scores_gemma":[0.9986902,0.0004308452,0.00012036749,0.00012363719,0.00016047034,0.00047446656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020755162,0.00009999833,0.00018917413,0.000046355493,0.000290162,0.00001595368,0.00009968393,0.000079127145,0.000011911214],"category_scores_gemma":[0.0015726255,0.000050095143,0.00008737485,0.000037681428,0.00018601399,0.0000052032815,0.000023006294,0.000042758627,5.9740717e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046992366,0.00014460065,0.044866227,0.000016697131,0.00016030473,0.0000028401737,0.00019513404,0.0000021146875,0.8055766,0.000031206186,0.0005073436,0.14802699],"study_design_scores_gemma":[0.004182365,0.012653426,0.9126033,0.0005807496,0.00015741907,0.00026839724,0.00025880907,0.000029939845,0.05600856,0.00022620351,0.0126701575,0.0003606512],"about_ca_topic_score_codex":0.0004371424,"about_ca_topic_score_gemma":0.0054732217,"teacher_disagreement_score":0.8677371,"about_ca_system_score_codex":0.00006266399,"about_ca_system_score_gemma":0.00032582585,"threshold_uncertainty_score":0.30541864},"labels":[],"label_agreement":null},{"id":"W2314281521","doi":"10.1128/jcm.02992-15","title":"Cumulative Antimicrobial Susceptibility Data from Intensive Care Units at One Institution: Should Data Be Combined?","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Michael's Hospital; University of Toronto","funders":"","keywords":"Piperacillin; Intensive care; Medicine; Tazobactam; Intensive care unit; Antibiotics; Antibiotic resistance; Intensive care medicine; Antimicrobial; Emergency medicine; Pseudomonas aeruginosa; Biology; Microbiology; Imipenem","score_opus":0.32619118674165437,"score_gpt":0.4234631507700159,"score_spread":0.09727196402836152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2314281521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891893,0.00024898024,0.000848456,0.003431953,0.002001127,0.00017699852,0.004037465,0.000010347907,0.000055335393],"genre_scores_gemma":[0.98974353,0.0002882962,0.0011698444,0.0018885282,0.001220641,4.7464093e-7,0.0055191917,0.000017210754,0.000152255],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99636436,0.0007448758,0.0017098747,0.00084330427,0.00007847581,0.000259116],"domain_scores_gemma":[0.99368215,0.0005434337,0.0010690268,0.0021167302,0.002416007,0.0001726828],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0016111233,0.00021074717,0.0006625578,0.000045891462,0.00011634557,0.000028858276,0.0017111594,0.00050675625,0.00028239074],"category_scores_gemma":[0.0153266275,0.00015144148,0.00013456494,0.00010235286,0.0007530517,0.00004637324,0.0023245043,0.00033903797,0.000039382547],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012528015,0.0001233135,0.03565852,0.000011329983,0.00022084556,0.000006282482,0.00006782995,9.843668e-7,0.93133533,0.000009439165,0.028841728,0.0024715965],"study_design_scores_gemma":[0.01774435,0.0036903692,0.134179,0.000631956,0.0007696865,0.00039084954,0.0014856254,0.000049968952,0.27449548,0.00020235145,0.56493264,0.0014276933],"about_ca_topic_score_codex":0.000047423047,"about_ca_topic_score_gemma":0.0009274474,"teacher_disagreement_score":0.65683985,"about_ca_system_score_codex":0.00005032287,"about_ca_system_score_gemma":0.00049312133,"threshold_uncertainty_score":0.99296767},"labels":[],"label_agreement":null},{"id":"W2314670995","doi":"10.3747/pdi.2013.00109","title":"A High Serum Vancomycin Level Is Associated with Lower Relapse Rates in Coagulase-Negative Staphylococcal Peritonitis","year":2014,"lang":"en","type":"article","venue":"Peritoneal Dialysis International","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Medicine; Peritoneal dialysis; Peritonitis; Vancomycin; Coagulase; Internal medicine; Staphylococcus; Staphylococcus aureus; Bacteria","score_opus":0.016265324025447156,"score_gpt":0.26134944695933393,"score_spread":0.24508412293388676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2314670995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971172,0.000008736578,0.00050573994,0.0006502625,0.00050789537,0.00014038027,0.0003096544,0.000021760832,0.0007383688],"genre_scores_gemma":[0.9961232,0.000010536444,0.0009512191,0.00032271122,0.00033078896,0.00005135555,0.00066500134,0.000025720507,0.0015194461],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99841094,0.0001916393,0.0003769293,0.00051487045,0.00027192305,0.00023372452],"domain_scores_gemma":[0.9990566,0.00007535809,0.00016570005,0.00027298194,0.00034696955,0.00008238766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003531054,0.0001992763,0.00025037452,0.00011244973,0.00009712285,0.000123791,0.0002681212,0.0001479651,0.0005112544],"category_scores_gemma":[0.0008781522,0.00019457832,0.0001111183,0.00018898062,0.00012872671,0.00002089758,0.000096724994,0.00015360508,0.000021879212],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00072130404,0.0009921042,0.41013092,0.00001881816,0.0005880178,0.000021479013,0.0010966412,0.00037889727,0.5782924,0.00058119034,0.0020303247,0.005147864],"study_design_scores_gemma":[0.0036216103,0.00044976684,0.8737465,0.00012074713,0.00006664508,0.000012123987,0.00035408375,0.007213448,0.10838641,0.00048463946,0.00475823,0.00078580686],"about_ca_topic_score_codex":0.00041511533,"about_ca_topic_score_gemma":0.002830119,"teacher_disagreement_score":0.46990603,"about_ca_system_score_codex":0.000081189406,"about_ca_system_score_gemma":0.00006285647,"threshold_uncertainty_score":0.79346734},"labels":[],"label_agreement":null},{"id":"W2318323132","doi":"10.1097/00003246-200412001-00041","title":"DURATION OF SHOCK PRIOR TO ANTIMICROBIAL ADMINISTRATION IS THE CRITICAL DETERMINANT OF SURVIVAL IN HUMAN SEPTIC SHOCK","year":2004,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Septic shock; Shock (circulatory); Antimicrobial; Duration (music); Intensive care medicine; Internal medicine; Sepsis; Microbiology","score_opus":0.025453795189955677,"score_gpt":0.34674816195846314,"score_spread":0.3212943667685075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2318323132","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929525,0.00005124825,0.0012902585,0.0050755036,0.00022268778,0.00019901503,0.000019343372,0.0000048878073,0.00018454576],"genre_scores_gemma":[0.9990174,0.0000025444908,0.00038104036,0.00031055446,0.0001897706,0.000007689044,0.000065188644,0.000008981097,0.000016830321],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998859,0.00007959535,0.0005023303,0.00024675697,0.00015975835,0.00015257517],"domain_scores_gemma":[0.9991624,0.00007987007,0.00004072937,0.00028187217,0.00036153925,0.00007361232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028828465,0.000098424265,0.00019850359,0.000042624808,0.00006113417,0.000010838185,0.00013661588,0.000098005556,0.000044604894],"category_scores_gemma":[0.0026966536,0.00007693729,0.000048511538,0.00011111705,0.0003496988,0.000005634249,0.000046257017,0.00007940686,0.0000016961936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055846034,0.00007363218,0.0019155412,0.00019930658,0.0000026793311,0.0000029674407,0.00085277343,0.000002071388,0.99510807,0.0013477898,0.000054399607,0.00038491626],"study_design_scores_gemma":[0.0007345902,0.0012216137,0.039895754,0.0002494271,0.000047433452,0.000015510159,0.0021683401,0.000011808454,0.9551069,0.00025688,0.00015406363,0.00013765106],"about_ca_topic_score_codex":0.000072147166,"about_ca_topic_score_gemma":0.0003773891,"teacher_disagreement_score":0.040001146,"about_ca_system_score_codex":0.000023857758,"about_ca_system_score_gemma":0.00009243317,"threshold_uncertainty_score":0.3228341},"labels":[],"label_agreement":null},{"id":"W2318840794","doi":"10.1017/s0950268813003300","title":"Latent class comparison of test accuracy when evaluating antimicrobial susceptibility using disk diffusion and broth microdilution to test<i>Escherichia coli</i>and<i>Mannheimia haemolytica</i>isolates recovered from beef feedlot cattle","year":2014,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Alberta Health Services; University of Guelph; University of Saskatchewan; Public Health Agency of Canada","funders":"Alberta Beef Producers; Beef Cattle Research Council; Public Health Agency; Public Health Agency of Canada","keywords":"Broth microdilution; Antimicrobial; Microbiology; Escherichia coli; Biology; Feedlot; Veterinary medicine; Minimum inhibitory concentration; Medicine; Animal science","score_opus":0.05384747216956739,"score_gpt":0.3348475423251023,"score_spread":0.2810000701555349,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2318840794","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928979,0.0001421156,0.0058577517,0.00041055479,0.00023593403,0.00036391636,0.000050255996,0.0000242071,0.000017323902],"genre_scores_gemma":[0.9942536,0.00011869166,0.004891041,0.00029734202,0.00016609157,0.000008494328,0.00023103628,0.000015463951,0.000018259581],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99783146,0.0005994563,0.0006652295,0.00061666925,0.00004490995,0.0002422886],"domain_scores_gemma":[0.99785036,0.0012253398,0.00038759664,0.00027462502,0.00014332919,0.000118749485],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0015211796,0.00020196816,0.00044119533,0.00004881218,0.00027552736,0.000035627392,0.00006283483,0.00029445198,0.000014494345],"category_scores_gemma":[0.012314714,0.00019876263,0.00005571044,0.00007229725,0.00019056463,0.000026405294,0.0001725017,0.00015547824,0.0000025759127],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006128919,0.00009200597,0.44254842,0.000028052542,0.0000115014245,9.82785e-9,0.00010126659,0.00008246665,0.55507815,0.0000065312324,0.000105842664,0.001884459],"study_design_scores_gemma":[0.00074517896,0.00092319335,0.8528914,0.00009378428,0.00009705794,0.00000694046,0.000026575008,0.024260506,0.11972734,0.00044221373,0.000510208,0.00027563356],"about_ca_topic_score_codex":0.0018226232,"about_ca_topic_score_gemma":0.0008358769,"teacher_disagreement_score":0.4353508,"about_ca_system_score_codex":0.000031098476,"about_ca_system_score_gemma":0.000030973257,"threshold_uncertainty_score":0.996005},"labels":[],"label_agreement":null},{"id":"W2322281722","doi":"","title":"Comparison of the New Starplex Starplex StarSwab II TM and the New Copan Vi-Pak Amies Agar Gel Collection and Transport Swabs with BBL TM Port-A-Cul TM for the Maintenance of Anaerobic and Fastidious Aerobic Organisms","year":2000,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Microbiology; Fastidious organism; Bacteroides fragilis; Chocolate agar; Biology; Prevotella; Agar; Agar plate; Anaerobic bacteria; Bacteria","score_opus":0.010758478162124338,"score_gpt":0.24075058807314906,"score_spread":0.22999210991102473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2322281722","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99329144,0.000866272,0.0031141574,0.0015478211,0.00005770567,0.0009588519,0.00003454301,0.000014397471,0.00011482407],"genre_scores_gemma":[0.9920326,0.00048482968,0.0015444383,0.00015338538,0.00004885885,0.000013045011,0.000044117565,0.000021369404,0.005657357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99875766,0.00007702666,0.000445572,0.0003696358,0.00013881538,0.00021131092],"domain_scores_gemma":[0.9990686,0.00007313005,0.00022996857,0.00040407522,0.00014347617,0.00008071087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034175196,0.00020313152,0.00033110057,0.000022325412,0.0003573452,0.00004471176,0.00018707669,0.00010038019,0.0000870917],"category_scores_gemma":[0.00006658924,0.00010876705,0.0000667761,0.00016530418,0.0005514033,0.000013378294,0.000051438576,0.000097082186,1.9160504e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027147417,0.00017689417,0.017241327,0.00017224363,0.00030094918,6.7613183e-7,0.0043257577,0.00021162779,0.96039736,0.00054175814,0.0070556756,0.0068610017],"study_design_scores_gemma":[0.015808392,0.0031817798,0.43442053,0.00026382448,0.0008642429,0.00013949594,0.011088962,0.0025101101,0.5007921,0.0008358346,0.029061852,0.0010328593],"about_ca_topic_score_codex":0.0013879427,"about_ca_topic_score_gemma":0.007426013,"teacher_disagreement_score":0.45960525,"about_ca_system_score_codex":0.000013715383,"about_ca_system_score_gemma":0.00018557724,"threshold_uncertainty_score":0.44353917},"labels":[],"label_agreement":null},{"id":"W2324033118","doi":"10.3918/jsicm.21.55","title":"Investigating blood culture collection in Japanese pediatric intensive care units","year":2014,"lang":"en","type":"article","venue":"Journal of the Japanese Society of Intensive Care Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Stollery Children's Hospital","funders":"","keywords":"Blood culture; Intensive care; Medicine; Intensive care medicine; Biology; Microbiology","score_opus":0.017141680664806782,"score_gpt":0.2633716073356748,"score_spread":0.246229926670868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2324033118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945435,0.0020916425,0.000008392408,0.0021788268,0.0009000469,0.00017912875,0.000004804896,0.000004823671,0.00008882051],"genre_scores_gemma":[0.99467105,0.00022708719,0.00016582239,0.0037059295,0.00096099766,0.000002354795,0.000032312833,0.000017624347,0.00021682006],"study_design_codex":"bench_or_experimental","study_design_gemma":"qualitative","domain_scores_codex":[0.99838156,0.00024594032,0.0006827244,0.00020764692,0.00030990515,0.00017223526],"domain_scores_gemma":[0.9755446,0.00008386815,0.00079596683,0.00029126095,0.023188133,0.00009619916],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0005048645,0.00018359539,0.0004053423,0.00006542903,0.00011489932,0.000011793474,0.00032317187,0.00021190452,0.0000073487763],"category_scores_gemma":[0.020514814,0.00012073445,0.00023912027,0.0005575167,0.00028253475,0.000011070851,0.0001148853,0.00041715673,4.265458e-7],"study_design_candidate":"qualitative","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049384143,0.000012765573,0.0451447,0.00034376222,0.00009787923,0.0000012453678,0.21219116,0.00005601449,0.71953315,0.0000016520877,0.022425393,0.00014291712],"study_design_scores_gemma":[0.0021602213,0.00091844273,0.023815265,0.00061498105,0.00028427978,0.00018323962,0.9381389,0.0000662394,0.033088706,0.000021077858,0.00052351085,0.00018511136],"about_ca_topic_score_codex":0.00018571892,"about_ca_topic_score_gemma":0.000094969655,"teacher_disagreement_score":0.72594774,"about_ca_system_score_codex":0.00006711584,"about_ca_system_score_gemma":0.00016079046,"threshold_uncertainty_score":0.9877358},"labels":[],"label_agreement":null},{"id":"W2339989570","doi":"10.1097/inf.0000000000001106","title":"Understanding Bacterial Isolates in Blood Culture and Approaches Used to Define Bacteria as Contaminants","year":2016,"lang":"en","type":"review","venue":"The Pediatric Infectious Disease Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"","keywords":"Blood culture; Streptococcus pneumoniae; Neisseria meningitidis; Medicine; Microbiology; Haemophilus influenzae; Intensive care medicine; Biology; Antibiotics; Bacteria","score_opus":0.08746263385596663,"score_gpt":0.29799059951886053,"score_spread":0.2105279656628939,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2339989570","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.42608333,0.5715865,0.00016143688,0.00006945662,0.00097153836,0.0008586352,0.00011970176,0.000023382694,0.00012599441],"genre_scores_gemma":[0.09006042,0.9070136,0.000021546335,0.000026083488,0.0025042808,0.000043204203,0.00007240961,0.000050242128,0.00020822992],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99802226,0.00045386126,0.0006156097,0.00043363578,0.00012426735,0.00035035287],"domain_scores_gemma":[0.998774,0.00009099433,0.00042296737,0.00032973697,0.00005833277,0.00032400014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062933064,0.00037363445,0.00058020797,0.00018777489,0.00029013783,0.00032711632,0.00026087393,0.0002586989,0.000074468066],"category_scores_gemma":[0.00074097235,0.00023143564,0.0002428845,0.00021624441,0.00005384182,0.000015079018,0.00017593379,0.00031304837,0.000027611703],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032177004,0.005198258,0.3309635,0.037001465,0.0051165503,0.0005495853,0.0053494335,0.0000204378,0.035819117,0.0019546854,0.011177699,0.5636316],"study_design_scores_gemma":[0.013803925,0.0030626375,0.026618114,0.011313697,0.014985441,0.009225139,0.00064760266,0.000010346541,0.00012357178,0.0041018985,0.90903234,0.007075288],"about_ca_topic_score_codex":0.000009298575,"about_ca_topic_score_gemma":0.000056592893,"teacher_disagreement_score":0.8978546,"about_ca_system_score_codex":0.00010553387,"about_ca_system_score_gemma":0.00041147595,"threshold_uncertainty_score":0.94376713},"labels":[],"label_agreement":null},{"id":"W2340129762","doi":"10.5206/wurjhns.2015-16.1","title":"Western Faculty Profile: Dr. John McCormick","year":2016,"lang":"en","type":"article","venue":"Western Undergraduate Research Journal Health and Natural Sciences","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Superantigen; Undergraduate research; Microbiology; Medicine; Library science; Biology; Immunology; Medical education","score_opus":0.10213439005210323,"score_gpt":0.43440913806313974,"score_spread":0.3322747480110365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340129762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95430785,0.0024758102,0.00013632404,0.042361517,0.00037895047,0.00021435569,0.0000118512535,0.000013568396,0.000099768265],"genre_scores_gemma":[0.99191225,0.002594818,0.00026128726,0.00039258154,0.0004494286,0.0000056159292,0.000013318488,0.000008906027,0.0043618036],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973272,0.00051535014,0.000357686,0.0003923765,0.0005855646,0.00082179724],"domain_scores_gemma":[0.998684,0.00007701486,0.00016073065,0.00015978923,0.000263639,0.0006548152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033488437,0.00013330503,0.00015458069,0.00013655903,0.001111023,0.00031538104,0.00035844467,0.00007488181,0.000008804348],"category_scores_gemma":[0.0004809846,0.00007667254,0.0000507942,0.00027250894,0.0005432717,0.00006199467,0.00018409752,0.00030599145,0.00003585055],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023756636,0.00013608382,0.4405607,0.00012894098,0.000033818924,0.000007314303,0.00028205148,3.4038786e-7,0.316495,0.0004900097,0.007447176,0.234181],"study_design_scores_gemma":[0.0044362727,0.0058707464,0.6488074,0.0011606225,0.000015644944,0.0025573373,0.0018346355,0.000096868025,0.03502682,0.0063717705,0.2923258,0.0014960774],"about_ca_topic_score_codex":0.00007013632,"about_ca_topic_score_gemma":0.0003108807,"teacher_disagreement_score":0.2848786,"about_ca_system_score_codex":0.000066614324,"about_ca_system_score_gemma":0.0005466773,"threshold_uncertainty_score":0.8545203},"labels":[],"label_agreement":null},{"id":"W2346373511","doi":"10.1371/journal.pone.0154944","title":"The Effect of Inadequate Initial Empiric Antimicrobial Treatment on Mortality in Critically Ill Patients with Bloodstream Infections: A Multi-Centre Retrospective Cohort Study","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institute for Clinical Evaluative Sciences; University of Calgary; Kingston General Hospital; Queen's University; London Health Sciences Centre; Université Laval; University of Manitoba; Nova Scotia Health Authority; St. Paul's Hospital; McMaster University; University of Alberta; Ottawa Hospital; Health Sciences Centre; Centre Hospitalier Universitaire de Sherbrooke; University of British Columbia; Public Health Ontario; Dalhousie University; Western University; Université de Sherbrooke; University of Toronto; St. Michael's Hospital; Sunnybrook Health Science Centre","funders":"Canadian Institutes of Health Research; University of Alberta; Fonds de Recherche du Québec - Santé; Alberta Innovates - Health Solutions; Ontario Ministry of Health and Long-Term Care; McMaster University; Alberta Innovates; Heart and Stroke Foundation of Canada","keywords":"Medicine; Bacteremia; Odds ratio; Retrospective cohort study; Empiric therapy; Confidence interval; Internal medicine; Blood culture; Cohort study; Logistic regression; Intensive care medicine; Antibiotics","score_opus":0.0220467947589168,"score_gpt":0.2761755256729155,"score_spread":0.2541287309139987,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2346373511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855256,0.0000026954583,0.000009707425,0.000074900265,0.00003828524,0.0012161668,0.00005878137,0.000012082953,0.00003483283],"genre_scores_gemma":[0.99971646,0.000010389237,0.000036187197,0.00002506572,0.000036691472,0.00007419145,0.000038909577,0.000012487998,0.00004960737],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99880505,0.00028728766,0.00025221816,0.00033342204,0.00015832722,0.00016367258],"domain_scores_gemma":[0.9989812,0.00007880018,0.000090776164,0.00035516397,0.00045350133,0.000040598727],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024085221,0.00013948276,0.00022547865,0.00003219617,0.00008372949,0.000020957781,0.00007955595,0.000059665723,0.000007899163],"category_scores_gemma":[0.0014491422,0.00007740252,0.000041409014,0.00008871886,0.00010318384,0.0000058387554,0.000035189776,0.00004964149,0.0000050516405],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024237599,0.00816463,0.89924085,0.000010952271,0.00025336433,8.3093266e-7,0.000041435764,3.7514695e-7,0.09163471,0.0000012181395,0.000002792566,0.00040643822],"study_design_scores_gemma":[0.0031028634,0.0040153954,0.818375,0.000057080426,0.00010863996,1.321452e-7,0.000016132017,0.0000038142787,0.17423494,0.0000013660203,0.0000016980019,0.000082935345],"about_ca_topic_score_codex":0.0001938307,"about_ca_topic_score_gemma":0.0017054088,"teacher_disagreement_score":0.08260023,"about_ca_system_score_codex":0.000079890466,"about_ca_system_score_gemma":0.000032427964,"threshold_uncertainty_score":0.3156383},"labels":[],"label_agreement":null},{"id":"W2347068053","doi":"10.1515/cclm-2015-0937","title":"Moving towards harmonized reporting of serum and urine protein electrophoresis","year":2016,"lang":"en","type":"editorial","venue":"Clinical Chemistry and Laboratory Medicine (CCLM)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Interior Health","funders":"","keywords":"Urine; Serum protein electrophoresis; Chromatography; Medicine; Chemistry; Internal medicine; Immunology; Antibody","score_opus":0.023498611582860325,"score_gpt":0.34382851662875075,"score_spread":0.32032990504589043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2347068053","genre_codex":"empirical","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9504746,0.0029380855,0.000032830812,0.0005559891,0.04495107,0.00032210175,0.00029058944,0.000039839313,0.00039489038],"genre_scores_gemma":[0.4257575,0.0029424161,0.00049232214,0.00012552325,0.56480867,0.000056890476,0.0006362219,0.00011296349,0.0050675105],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9957246,0.00019692273,0.0024492552,0.0009856635,0.00033883634,0.0003046782],"domain_scores_gemma":[0.99553835,0.00027997757,0.0023673414,0.0006821061,0.0008425274,0.00028966545],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003176594,0.00037492803,0.0009975507,0.000022996752,0.00010172502,0.000028028435,0.00024289695,0.0012133591,0.00012861783],"category_scores_gemma":[0.04466553,0.0002966425,0.00011399313,0.00012078092,0.00067830173,0.00000792884,0.00024392323,0.0006356599,9.0877444e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019828798,0.000051110183,0.0009541187,0.00089440815,0.000099470206,0.00001144276,0.000016232414,1.7494234e-8,0.8891425,0.0000012227586,0.1047731,0.0038580766],"study_design_scores_gemma":[0.002817574,0.0005403461,0.0029277627,0.001297203,0.00022813307,0.000008573736,0.00008503456,0.0000049914033,0.42919788,0.000078390935,0.562166,0.0006481331],"about_ca_topic_score_codex":0.000020626272,"about_ca_topic_score_gemma":0.000004811189,"teacher_disagreement_score":0.5247171,"about_ca_system_score_codex":0.000020187446,"about_ca_system_score_gemma":0.0006308972,"threshold_uncertainty_score":0.99994856},"labels":[],"label_agreement":null},{"id":"W2357587481","doi":"","title":"Monitoring of blood culture submission of 72 hospitals in 2011 Shanghai","year":2012,"lang":"en","type":"article","venue":"Zhongguo yiyuan ganranxue zazhi","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Blood culture; Medicine; Quarter (Canadian coin); Antibiotics; Emergency medicine; Internal medicine; Pediatrics; Biology; History; Microbiology","score_opus":0.01563856136405975,"score_gpt":0.26473086262740403,"score_spread":0.24909230126334428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2357587481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971894,0.0017310972,0.000031514242,0.000025548794,0.0003735891,0.00016214454,0.000016582504,0.000011456724,0.00045867654],"genre_scores_gemma":[0.9979461,0.00015257637,0.0010024444,0.000009793146,0.00026541017,0.000007442429,0.000042378873,0.000019770845,0.00055407564],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886185,0.00006998631,0.00041274924,0.00023498181,0.00013580169,0.0002846226],"domain_scores_gemma":[0.9992097,0.000012396274,0.00019836087,0.00036837853,0.00011504531,0.00009611452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040725354,0.00014044066,0.00021806301,0.00006461245,0.000036003472,0.000010864793,0.00019852036,0.00019026887,0.00006479048],"category_scores_gemma":[0.0002066022,0.00013531376,0.00009836969,0.000119996395,0.000060441762,0.00001658999,0.00009189483,0.00009466124,0.000009470947],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019078267,0.00015855714,0.33448377,0.000050760573,0.000015228944,3.4361776e-7,0.00035494234,0.0000013463983,0.664082,0.000016266853,0.000090613874,0.0007271199],"study_design_scores_gemma":[0.00035212692,0.00007495305,0.31027177,0.00006406778,0.000020014555,0.000003337399,0.00021710717,0.0000020159916,0.6884867,0.000017736586,0.00037854456,0.000111613794],"about_ca_topic_score_codex":0.000060504055,"about_ca_topic_score_gemma":0.000008854011,"teacher_disagreement_score":0.024404747,"about_ca_system_score_codex":0.0000079168085,"about_ca_system_score_gemma":0.000027545018,"threshold_uncertainty_score":0.5517935},"labels":[],"label_agreement":null},{"id":"W2396706077","doi":"10.1007/978-1-4939-1776-1_5","title":"Matrix-Assisted Laser Desorption/Ionization Time of Flight Mass Spectrometry (MALDI-TOF/MS)-Based Identification of Pathogens from Positive Blood Culture Bottles","year":2014,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Microbiology; Bacteria; Blood culture; Matrix-assisted laser desorption/ionization; Chromatography; Chemistry; Biology; Antibiotics; Desorption","score_opus":0.009051165429782147,"score_gpt":0.3124183948383242,"score_spread":0.30336722940854205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2396706077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.50044966,0.00013003963,0.49899226,0.0000387555,0.00008336412,0.00014661823,0.00010205587,0.0000105348845,0.00004674171],"genre_scores_gemma":[0.5909089,0.000014391713,0.40747327,0.000053318683,0.000050106883,0.000014051398,0.0013914497,0.000019302199,0.00007522446],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99667424,0.0017576587,0.00072858616,0.0005424216,0.000100699566,0.00019639418],"domain_scores_gemma":[0.99846905,0.00011997787,0.0004932998,0.00056059594,0.0003064922,0.000050565544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012089857,0.00019346454,0.00035594558,0.00017869307,0.000042995427,0.000018063534,0.00025655088,0.00039101276,0.00007474924],"category_scores_gemma":[0.0014404107,0.00019456557,0.00015039874,0.000405721,0.00015751012,0.0000061767473,0.000060425555,0.000109025554,0.0000063526086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006413832,0.0001607488,0.005823956,0.00002715877,0.00006321067,8.756356e-7,0.000045951976,0.00011277328,0.99252236,0.0002878662,0.0000088279985,0.0008821376],"study_design_scores_gemma":[0.00060923846,0.00019094431,0.021478659,0.000024321795,0.000081943675,0.0000022224922,0.000023158342,0.0012192288,0.9749271,0.0011812379,0.00008198739,0.00017995838],"about_ca_topic_score_codex":0.00003482263,"about_ca_topic_score_gemma":0.0000121338935,"teacher_disagreement_score":0.091518976,"about_ca_system_score_codex":0.000021600306,"about_ca_system_score_gemma":0.000050340957,"threshold_uncertainty_score":0.79341537},"labels":[],"label_agreement":null},{"id":"W2402704592","doi":"10.1128/microbe.2.577.3","title":"Multiple Combination Bactericidal Testing","year":2007,"lang":"en","type":"article","venue":"Microbe Magazine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"","keywords":"Computer science","score_opus":0.019134349348218144,"score_gpt":0.2509106456534484,"score_spread":0.23177629630523025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2402704592","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913717,0.00003319598,0.005570419,0.00009474312,0.00022806317,0.000121811936,0.00000720528,0.000041609495,0.002531284],"genre_scores_gemma":[0.9897822,0.0000016866995,0.0077717416,0.00021281648,0.00019346,0.0000026668251,0.0002707268,0.000016613873,0.0017480603],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992271,0.000025518175,0.00023136246,0.00025559735,0.000056416022,0.00020398619],"domain_scores_gemma":[0.999441,0.000031692958,0.000077086705,0.0002331316,0.00016093689,0.000056131532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042530184,0.000099512035,0.0000790113,0.00003949869,0.00008463795,0.000041924635,0.000111340785,0.000078734876,0.000044161017],"category_scores_gemma":[0.00058788015,0.000106877276,0.000036718848,0.00013075811,0.000036801404,0.0000044150906,0.00007831878,0.000058678117,0.00010702285],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024005207,0.000064690576,0.04580661,0.000009121322,0.0000050126146,0.0000014004106,0.000017397355,0.0000015700962,0.9454872,0.000012031188,0.0011969078,0.00737406],"study_design_scores_gemma":[0.00052559545,0.00008279072,0.50843656,0.000007779145,0.0000053898098,0.00002128209,0.000017462771,0.000084789805,0.46197528,0.0000162555,0.028672341,0.00015449946],"about_ca_topic_score_codex":0.000027460213,"about_ca_topic_score_gemma":0.0001424085,"teacher_disagreement_score":0.48351192,"about_ca_system_score_codex":0.000016634573,"about_ca_system_score_gemma":0.000018811901,"threshold_uncertainty_score":0.4358329},"labels":[],"label_agreement":null},{"id":"W2405778365","doi":"","title":"Descriptive epidemiology of verotoxin-producing E. coli reported in Ontario, 1996-2005.","year":2007,"lang":"en","type":"article","venue":"PubMed","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of Health and Long Term Care","funders":"","keywords":"Epidemiology; Environmental health; Medicine; Criminology; Virology; Psychology; Internal medicine","score_opus":0.0762674944083502,"score_gpt":0.27988773553562984,"score_spread":0.20362024112727964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2405778365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976477,0.000085903885,0.0003386724,0.00006659432,0.0003184143,0.00054894795,0.0000027855074,0.000011056874,0.0009798983],"genre_scores_gemma":[0.9975505,0.000005198687,0.0009087835,0.00011377836,0.00007883109,0.00013280878,0.00006264161,0.000010078477,0.001137374],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99837804,0.00011743787,0.000651117,0.00040760072,0.000059311864,0.00038650498],"domain_scores_gemma":[0.99910206,0.000060059483,0.00025639395,0.000405965,0.00008488946,0.00009064106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034386604,0.00009878612,0.00021675834,0.00007401014,0.00002872825,0.00000400679,0.00011826526,0.00014024423,0.000021325099],"category_scores_gemma":[0.0029333332,0.00010511637,0.00006135445,0.00009390943,0.0000806206,0.0000046892765,0.000061085375,0.000117492484,0.000001567641],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013666732,0.00007531949,0.7987615,0.000010622721,0.000023739447,0.000004168319,0.00015267756,0.0000075166736,0.19636707,0.000042329037,0.00015530144,0.00426312],"study_design_scores_gemma":[0.0002612319,0.000019761741,0.92518497,0.0000055820447,0.000006696728,0.00000777924,0.00006406297,0.0000025982804,0.07245888,0.00010524418,0.0017904335,0.000092787464],"about_ca_topic_score_codex":0.017202811,"about_ca_topic_score_gemma":0.17936973,"teacher_disagreement_score":0.16216692,"about_ca_system_score_codex":0.00010731864,"about_ca_system_score_gemma":0.00008315863,"threshold_uncertainty_score":0.98934174},"labels":[],"label_agreement":null},{"id":"W2410982116","doi":"10.1155/2016/2935870","title":"The Validation of a Novel Surveillance System for Monitoring Bloodstream Infections in the Calgary Zone","year":2016,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Health Sciences Centre; Calgary Laboratory Services; University of Calgary","funders":"Pfizer Canada; University of Calgary; Pfizer","keywords":"Bloodstream infection; Medicine; Intensive care medicine","score_opus":0.00849054713670341,"score_gpt":0.23847552667433808,"score_spread":0.22998497953763467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2410982116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99630713,0.0006051621,0.0018920391,0.0005104281,0.0005080687,0.00011052723,0.000054005905,0.0000016103088,0.00001100579],"genre_scores_gemma":[0.9995781,0.00012796048,0.0000139931635,0.000030771476,0.00021778718,0.000008760517,0.00000881219,0.0000039013325,0.0000098846685],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993834,0.00010649194,0.0002673419,0.00008509715,0.000028652417,0.00012902512],"domain_scores_gemma":[0.99924463,0.00022736492,0.00014202837,0.00009788277,0.00015394113,0.0001341251],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000509242,0.000054563214,0.00010374291,0.000043414777,0.000120444405,0.00001605994,0.00010758063,0.00008009218,0.0000030005074],"category_scores_gemma":[0.0013826692,0.000028717679,0.00005785354,0.000052109328,0.00017293842,0.000003800797,0.0000094681745,0.000049724134,1.4641793e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026771295,0.00007211819,0.5942777,0.000042115338,0.00005588163,0.0000027840254,0.0000553946,0.0000029153503,0.39474025,0.0002523145,0.0002119314,0.010259827],"study_design_scores_gemma":[0.013140044,0.0029343332,0.858031,0.0011979818,0.00025122688,0.005416949,0.0021621538,0.000045297264,0.050046798,0.0002322367,0.06584616,0.00069582975],"about_ca_topic_score_codex":0.0009086894,"about_ca_topic_score_gemma":0.007848194,"teacher_disagreement_score":0.34469345,"about_ca_system_score_codex":0.000029644229,"about_ca_system_score_gemma":0.0004011349,"threshold_uncertainty_score":0.43794766},"labels":[],"label_agreement":null},{"id":"W2413219847","doi":"","title":"Search for enterotoxin gene in Bacteroides fragilis strains isolated from clinical specimens in Poland, Great Britain, The Netherlands and France.","year":2001,"lang":"en","type":"article","venue":"PubMed","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Bacteroides fragilis; Enterotoxin; Microbiology; Biology; Virulence; Polymerase chain reaction; Agarose gel electrophoresis; Gene; Escherichia coli; Genetics; Antibiotics","score_opus":0.040429999880000705,"score_gpt":0.28710076626152187,"score_spread":0.24667076638152116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2413219847","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99788064,0.00021396934,0.00019519213,0.0006335263,0.000114486334,0.00081855897,0.000060571478,0.00000766219,0.00007538628],"genre_scores_gemma":[0.9983483,0.00021561253,0.00009696405,0.00025983402,0.0002824969,0.00026122428,0.0001864953,0.0000134226375,0.0003356725],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987548,0.00016875836,0.0003591203,0.00036745696,0.000060365608,0.00028947112],"domain_scores_gemma":[0.99949265,0.000081202015,0.000049460163,0.0002607788,0.000041666142,0.000074264084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000820841,0.00010483159,0.0001579565,0.000036322555,0.000044797012,0.000067180015,0.00014931157,0.00014395322,0.000023261131],"category_scores_gemma":[0.0002104164,0.00008655215,0.00005344656,0.00008903738,0.00008881592,0.0000070049246,0.000048759153,0.00013149196,0.0000013768657],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017507399,0.00007235475,0.91443557,0.0000044805433,0.000017122376,0.00000276359,0.00011457124,0.0000022901784,0.05685933,0.0000014810175,0.000097776945,0.028217202],"study_design_scores_gemma":[0.0012836553,0.00004648505,0.99216306,0.0000054837537,0.0000047463777,0.0000034072586,0.000075819975,0.00018371707,0.0032053154,0.000046850924,0.0028845244,0.00009695512],"about_ca_topic_score_codex":0.00033836337,"about_ca_topic_score_gemma":0.0020378698,"teacher_disagreement_score":0.07772748,"about_ca_system_score_codex":0.000013504862,"about_ca_system_score_gemma":0.000016349974,"threshold_uncertainty_score":0.3529494},"labels":[],"label_agreement":null},{"id":"W2413582497","doi":"","title":"The performance under standardized conditions of antibiotic sensitivity tests using discs that meet official Canadian standards.","year":2000,"lang":"en","type":"article","venue":"PubMed","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Sensitivity (control systems); Antibiotic sensitivity; Antibiotics; Medicine; Microbiology; Engineering; Biology","score_opus":0.023594595098196988,"score_gpt":0.2580670340144307,"score_spread":0.2344724389162337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2413582497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977035,0.00004367334,0.000053018564,0.00023080943,0.0001538342,0.00031560523,0.00042916104,0.000009605855,0.00106079],"genre_scores_gemma":[0.99943286,0.0000419155,0.00003955901,0.00006694553,0.00008398612,0.000010728543,0.000073086485,0.000011395333,0.0002394971],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99906486,0.00011528039,0.00017699135,0.00019214854,0.00016158113,0.00028913975],"domain_scores_gemma":[0.9993528,0.000031372514,0.00006746262,0.00027968318,0.00015207332,0.0001165852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00074437686,0.00009328364,0.00011481294,0.000026897236,0.0003424301,0.00006405435,0.00008627043,0.00007273552,0.000028761227],"category_scores_gemma":[0.00018213796,0.00007739784,0.00005586632,0.00009052501,0.0001786212,0.000008434854,0.000019871037,0.000049385242,0.0000010353796],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007581101,0.0002859195,0.11966854,0.00014836992,0.00042990595,0.000013983596,0.00031823217,0.0039350702,0.70501655,0.0005016523,0.004783743,0.16413994],"study_design_scores_gemma":[0.00049813505,0.000026319043,0.8841673,0.0000150902315,0.000040052233,0.000020615753,0.00011244867,0.0004945937,0.104571335,0.000031733896,0.009808012,0.00021432727],"about_ca_topic_score_codex":0.0028449986,"about_ca_topic_score_gemma":0.064759925,"teacher_disagreement_score":0.7644988,"about_ca_system_score_codex":0.00008141847,"about_ca_system_score_gemma":0.0003071932,"threshold_uncertainty_score":0.9523058},"labels":[],"label_agreement":null},{"id":"W2415516705","doi":"10.1002/9781119021872.ch22","title":"Automated and Manual Systems for Antimicrobial Susceptibility Testing of Bacteria","year":2016,"lang":"en","type":"other","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Antimicrobial; Bacteria; Microbiology; Biology; Computational biology; Genetics","score_opus":0.019999301948594096,"score_gpt":0.2876056445479402,"score_spread":0.26760634259934607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2415516705","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78316766,0.0009615002,0.0051401723,0.00015672047,0.004310802,0.005690523,0.004586193,0.0015704101,0.19441599],"genre_scores_gemma":[0.3011752,0.000112633235,0.012380883,0.000049581813,0.0012906953,0.000059275848,0.0010637657,0.00045322298,0.6834147],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99889106,0.00006359767,0.00034745896,0.0004677628,0.000052923086,0.00017718758],"domain_scores_gemma":[0.9990921,0.00003926146,0.0002921055,0.00038258923,0.00013957267,0.000054376764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026834858,0.00019510223,0.00029118688,0.000057067355,0.000032841173,0.000038485865,0.00012823835,0.00033482222,0.0001693385],"category_scores_gemma":[0.00033685507,0.00016191721,0.00005894258,0.000032196927,0.00011435706,0.0000018847373,0.00008777063,0.000030678908,0.00000831165],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024355986,0.000026489424,0.0011939253,0.0004504704,0.000039504426,1.033469e-7,0.000003642328,1.1418014e-7,0.84283173,0.000026230477,0.15496607,0.00043734995],"study_design_scores_gemma":[0.0035308704,0.0006983178,0.010267748,0.0013788685,0.00020331086,0.000052379444,0.00009753283,0.0008015788,0.20156263,0.00002498927,0.7796025,0.0017792729],"about_ca_topic_score_codex":0.00019438914,"about_ca_topic_score_gemma":0.000118707285,"teacher_disagreement_score":0.6412691,"about_ca_system_score_codex":0.000008613619,"about_ca_system_score_gemma":0.00006348656,"threshold_uncertainty_score":0.6602792},"labels":[],"label_agreement":null},{"id":"W2417481141","doi":"10.1093/jac/dkw175","title":"Emergence and evolution of an international cluster of MDR<i>Bacteroides fragilis</i>isolates","year":2016,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Society of Clinical Microbiology and Infectious Diseases; Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Biology; Microbiology; Antibiotic resistance; Pulsed-field gel electrophoresis; Tetracycline; Genetics; Multiple drug resistance; Gene; Antibiotics; Genotype","score_opus":0.00698543596295004,"score_gpt":0.2470016187785066,"score_spread":0.24001618281555656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2417481141","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969578,0.000044033466,0.0021161297,0.0005306837,0.00026055527,0.000043904303,0.000014477439,0.0000019244999,0.000030531573],"genre_scores_gemma":[0.9967401,0.0004126399,0.0025069688,0.00009109232,0.00017559546,1.8446785e-7,0.000003853153,0.000008941881,0.0000606281],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992776,0.000043143355,0.00042203636,0.000115414005,0.000069480026,0.00007236214],"domain_scores_gemma":[0.9990433,0.000012631308,0.0004339645,0.00013080805,0.0003417988,0.000037536585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002725187,0.00007400655,0.00014513043,0.00005874444,0.000018056075,0.000011290134,0.00016721101,0.00007263498,0.000058875765],"category_scores_gemma":[0.00009909057,0.00005450855,0.00007482243,0.000038567458,0.000096062744,0.000032967826,0.000025622676,0.000035883575,3.517672e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003063657,0.000089099405,0.018307244,0.000012727576,0.000043002823,1.4903445e-7,0.00007122743,0.000002212932,0.9772952,0.000011330381,0.00032901717,0.003532388],"study_design_scores_gemma":[0.0009208275,0.00022292927,0.04017753,0.000063658896,0.000008506841,0.000036742214,0.00002862982,0.000021793121,0.9574291,0.00005865064,0.00096168777,0.000069952686],"about_ca_topic_score_codex":0.000010063812,"about_ca_topic_score_gemma":0.0000066449493,"teacher_disagreement_score":0.021870287,"about_ca_system_score_codex":0.000008489141,"about_ca_system_score_gemma":0.000042501186,"threshold_uncertainty_score":0.22227941},"labels":[],"label_agreement":null},{"id":"W2427177676","doi":"10.1007/978-1-4939-3676-2_4","title":"Cell Shaving and False-Positive Control Strategies Coupled to Novel Statistical Tools to Profile Gram-Positive Bacterial Surface Proteomes","year":2016,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Proteome; Lysis; Intracellular; Cell; Proteolysis; Computational biology; Cell biology; Chemistry; Biology; Biophysics; Biochemistry","score_opus":0.02057846384377164,"score_gpt":0.3570465264843252,"score_spread":0.33646806264055357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2427177676","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4530517,0.000025529229,0.54553664,0.00026151625,0.00010974018,0.00069310184,0.0002549392,0.000012362378,0.000054490072],"genre_scores_gemma":[0.5307579,0.000003466288,0.46853104,0.0003650715,0.000056276196,0.00010623392,0.00009715374,0.00002334714,0.000059514343],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973778,0.00092323194,0.00041079315,0.0007956002,0.00007235407,0.00042023114],"domain_scores_gemma":[0.9988741,0.0003375581,0.0000965396,0.0003293316,0.00018734536,0.000175109],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001128411,0.00025034128,0.00037236244,0.000054596436,0.000068390415,0.00010528585,0.00020206628,0.00024628534,0.00006581602],"category_scores_gemma":[0.0016475347,0.0002054296,0.00004985665,0.00011665704,0.00015076181,0.000010853356,0.00019197402,0.00009881518,0.000016833768],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002697456,0.000083491635,0.00060361536,0.000013679755,0.00002674259,0.0000043876876,0.00008463286,0.000012109705,0.9903882,0.0009663574,0.000013010833,0.0075340252],"study_design_scores_gemma":[0.0016272821,0.00071708515,0.011679506,0.00004345025,0.000021403019,0.00000730095,0.00011483275,0.00009078296,0.9844489,0.00037365692,0.00048107372,0.00039469675],"about_ca_topic_score_codex":0.00007846521,"about_ca_topic_score_gemma":0.000030093477,"teacher_disagreement_score":0.07770619,"about_ca_system_score_codex":0.00003967747,"about_ca_system_score_gemma":0.00009289675,"threshold_uncertainty_score":0.8377176},"labels":[],"label_agreement":null},{"id":"W2427545286","doi":"10.1186/s12879-016-1622-z","title":"Sending repeat cultures: is there a role in the management of bacteremic episodes? (SCRIBE study)","year":2016,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Bacteremia; Medicine; Odds ratio; Blood culture; Internal medicine; Confidence interval; Retrospective cohort study; Staphylococcus aureus; Surgery; Microbiology; Biology; Antibiotics; Bacteria","score_opus":0.01402792082009304,"score_gpt":0.275593816684827,"score_spread":0.261565895864734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2427545286","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981914,0.00016559643,0.00014521678,0.0000394908,0.00007228557,0.00038180256,0.00002713372,0.000018910323,0.00095812575],"genre_scores_gemma":[0.9993894,0.00007758495,0.000030867188,0.00006096341,0.00006660998,0.00005992452,0.000017005446,0.000009955112,0.00028767096],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99910665,0.00016047493,0.00021981947,0.00027737083,0.00010120349,0.00013448631],"domain_scores_gemma":[0.99936205,0.000028043538,0.00009142452,0.0004398523,0.00004735272,0.00003129497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018040858,0.000106404004,0.000100373,0.000031013165,0.00006528511,0.00003381248,0.0001684498,0.000040742736,0.000048954767],"category_scores_gemma":[0.00007594325,0.00006333263,0.00008464334,0.00009557651,0.00003946421,0.00000719998,0.0000738248,0.000027975748,0.0000095633195],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054653065,0.0005139557,0.89074045,0.00007404893,0.00006258088,0.0000028155084,0.00039413862,0.0000021714961,0.10488634,0.00013648855,0.0002463224,0.0028860155],"study_design_scores_gemma":[0.0012097495,0.00017915775,0.9853633,0.000105120234,0.00007956596,0.0000062587333,0.0028065895,0.000004364219,0.008178691,0.00047210397,0.0014181983,0.00017688805],"about_ca_topic_score_codex":0.000053252592,"about_ca_topic_score_gemma":0.00021816653,"teacher_disagreement_score":0.09670764,"about_ca_system_score_codex":0.000019461582,"about_ca_system_score_gemma":0.000018303837,"threshold_uncertainty_score":0.25826296},"labels":[],"label_agreement":null},{"id":"W2439249045","doi":"10.1093/jpids/piv078","title":"Time to Positivity of Blood Cultures in Infants 0 to 90 Days Old Presenting to the Emergency Department: Is 36 Hours Enough?","year":2015,"lang":"en","type":"article","venue":"Journal of the Pediatric Infectious Diseases Society","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Medicine; Blood culture; Bacteremia; Emergency department; Incubation period; Clinical microbiology; Gram staining; Emergency medicine; Pediatrics; Incubation; Microbiology; Antibiotics; Biology","score_opus":0.008904516936297072,"score_gpt":0.2628380451632711,"score_spread":0.253933528226974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2439249045","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99796975,0.00026140097,0.00003886913,0.00084870256,0.00038946018,0.00031727695,0.000076972545,0.0000058356854,0.00009172683],"genre_scores_gemma":[0.99821615,0.000063038024,0.00009771518,0.00054515916,0.00081396557,0.000009233555,0.000005264971,0.000011282415,0.00023818598],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988111,0.0001556882,0.00040810657,0.00017393705,0.00025699293,0.00019413124],"domain_scores_gemma":[0.9988225,0.000025712772,0.00029489465,0.0002912762,0.00035605888,0.0002095762],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051007816,0.00011842455,0.00016319715,0.00003719151,0.00011378485,0.000035850342,0.0003180563,0.00006655551,0.000023458042],"category_scores_gemma":[0.0009939771,0.000079747086,0.00029994882,0.00043103224,0.000019012881,0.000013440284,0.0002500263,0.00010950674,0.000010588764],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059103535,0.00041870304,0.8872367,0.000024108966,0.00010727206,8.212934e-7,0.0020590178,0.0012659503,0.043046404,0.0000010496414,0.06563012,0.0001507534],"study_design_scores_gemma":[0.0014998907,0.00060879946,0.9820661,0.000042795422,0.00083722244,0.000078889985,0.0007887244,0.00006849312,0.010119692,0.00015204889,0.003266926,0.00047043248],"about_ca_topic_score_codex":0.000058049674,"about_ca_topic_score_gemma":0.000042955096,"teacher_disagreement_score":0.09482939,"about_ca_system_score_codex":0.00003974753,"about_ca_system_score_gemma":0.00013859448,"threshold_uncertainty_score":0.3251992},"labels":[],"label_agreement":null},{"id":"W2460503493","doi":"10.1128/jcm.01040-16","title":"Automatic Digital Analysis of Chromogenic Media for Vancomycin-Resistant-Enterococcus Screens Using Copan WASPLab","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Regional Laboratory Medicine Program; Hamilton Health Sciences; Université Laval","funders":"","keywords":"Chromogenic; Enterococcus; Vancomycin; Microbiology; Medicine; Biology; Bacteria; Chemistry; Antibiotics; Chromatography; Staphylococcus aureus","score_opus":0.06382803396320497,"score_gpt":0.3689838492109858,"score_spread":0.30515581524778085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2460503493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933564,0.000119699886,0.0053878934,0.0001331072,0.0005473833,0.00011549458,0.00032489275,0.000004169789,0.0000109661405],"genre_scores_gemma":[0.9969148,0.000036864214,0.0025109774,0.00007468006,0.00032608572,0.0000010407621,0.00007300361,0.0000121460325,0.000050417962],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975546,0.0001837356,0.0017699568,0.00024647714,0.000047597438,0.00019761418],"domain_scores_gemma":[0.99713093,0.00065004005,0.0013251004,0.00028987808,0.00049525365,0.00010877585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010799227,0.00012801099,0.0007307542,0.0001449124,0.00003596322,0.000017962613,0.0002921609,0.00023274064,0.00008139201],"category_scores_gemma":[0.003534623,0.00008624488,0.000751935,0.00014522218,0.00022945002,0.000012149529,0.000076167504,0.00008207809,0.0000024672781],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035814947,0.00013824346,0.025641598,0.000016131764,0.0009163322,0.0000011416681,0.0000107880915,0.000003633849,0.9658766,0.000007712798,0.00028649849,0.006743199],"study_design_scores_gemma":[0.019518444,0.007909194,0.44148314,0.0007045959,0.0076143434,0.0003859679,0.00034586375,0.001161525,0.4750451,0.00054193026,0.04384576,0.0014441373],"about_ca_topic_score_codex":0.000002536115,"about_ca_topic_score_gemma":0.000050302297,"teacher_disagreement_score":0.49083146,"about_ca_system_score_codex":0.00001942056,"about_ca_system_score_gemma":0.00015399442,"threshold_uncertainty_score":0.42315292},"labels":[],"label_agreement":null},{"id":"W2463803484","doi":"","title":"Methicillin-Resistant Staphylococcus aureus (MRSA) in Canadian Aboriginals","year":2004,"lang":"en","type":"article","venue":"42nd Annual Meeting","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Staphylococcus aureus; Microbiology; Methicillin-resistant Staphylococcus aureus; Medicine; Biology; Bacteria; Genetics","score_opus":0.014020814720598532,"score_gpt":0.2792139446139834,"score_spread":0.2651931298933849,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2463803484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99545074,0.00027364408,0.00004375973,0.0008156173,0.00020688375,0.00016159414,0.00007768178,0.000019937877,0.0029501328],"genre_scores_gemma":[0.9977805,0.000021338916,0.0012444002,0.00040338121,0.0002413943,0.000013252315,0.00007791611,0.00001903586,0.00019878431],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99861455,0.00008840189,0.00032295656,0.00039182618,0.00012116739,0.00046108654],"domain_scores_gemma":[0.99922955,0.00001954496,0.000080432124,0.0002870057,0.0001587633,0.00022472645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008112796,0.00014620532,0.00014617472,0.0001077064,0.00013925594,0.00006277591,0.0001958063,0.0001618871,0.000020957168],"category_scores_gemma":[0.00075857417,0.00015418782,0.00005698818,0.00019398592,0.0000514989,0.000008438727,0.00003906037,0.0001460582,0.000023024724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018630584,0.000029138904,0.0056781257,0.000015892829,0.000009447972,0.000011465361,0.00046598617,0.0003021894,0.9923243,0.0004163583,0.00009776237,0.0006307228],"study_design_scores_gemma":[0.0018910739,0.00032656704,0.09717374,0.00029799042,0.000029974082,0.0000023472244,0.002850341,0.000057854202,0.62887657,0.0011625498,0.26619917,0.0011318297],"about_ca_topic_score_codex":0.13690385,"about_ca_topic_score_gemma":0.4489046,"teacher_disagreement_score":0.36344773,"about_ca_system_score_codex":0.00010584515,"about_ca_system_score_gemma":0.0004711234,"threshold_uncertainty_score":0.86884356},"labels":[],"label_agreement":null},{"id":"W2467068951","doi":"10.1093/jpids/piw033","title":"Impact of Matrix-Assisted Laser Desorption and Ionization Time-of-Flight and Antimicrobial Stewardship Intervention on Treatment of Bloodstream Infections in Hospitalized Children","year":2016,"lang":"en","type":"article","venue":"Journal of the Pediatric Infectious Diseases Society","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Medicine; Antimicrobial stewardship; Bacteremia; Antimicrobial; Psychological intervention; Cohort; Bloodstream infection; Prospective cohort study; Blood culture; Internal medicine; Infection control; Intensive care medicine; Emergency medicine; Antibiotics; Microbiology; Antibiotic resistance","score_opus":0.005293709730402745,"score_gpt":0.2560355644819373,"score_spread":0.2507418547515346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2467068951","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99945974,0.00014419583,0.00006661467,0.000020146545,0.0000731826,0.00015624044,0.00007452042,0.0000029334838,0.000002403519],"genre_scores_gemma":[0.99894917,0.0008803092,0.00002975478,0.000001948992,0.00010050212,0.0000016617562,0.000011760334,0.0000066094717,0.000018258264],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99930346,0.000095827134,0.00036702695,0.00009792485,0.00007138564,0.000064351836],"domain_scores_gemma":[0.9990634,0.00003292074,0.000593503,0.000099071534,0.00017551407,0.000035612946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012726441,0.000087369626,0.00017321037,0.000062280145,0.000037608883,0.000010885358,0.000041433654,0.00007322784,0.000007971133],"category_scores_gemma":[0.00015226759,0.00005245311,0.00033311898,0.00015838936,0.000059058955,0.000015122403,0.000025054795,0.000027348826,1.4917053e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006754093,0.00086488423,0.88979626,0.00002914437,0.00010858258,4.5334783e-8,0.000059963735,0.000033955534,0.108382404,0.0000011927323,0.000048405243,0.0006076297],"study_design_scores_gemma":[0.002208708,0.0011667756,0.9891469,0.000042638443,0.00023635525,0.000037623955,0.000009652988,0.000012330467,0.0070605045,0.000023167522,7.64553e-7,0.000054617398],"about_ca_topic_score_codex":0.00006198603,"about_ca_topic_score_gemma":0.000008671606,"teacher_disagreement_score":0.1013219,"about_ca_system_score_codex":0.000064961154,"about_ca_system_score_gemma":0.00006351228,"threshold_uncertainty_score":0.21389759},"labels":[],"label_agreement":null},{"id":"W2474094454","doi":"10.1039/c6an00540c","title":"High throughput LSPR and SERS analysis of aminoglycoside antibiotics","year":2016,"lang":"en","type":"article","venue":"The Analyst","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Aminoglycoside; Antibiotics; Adverse effect; Microbiology; Medicine; Pharmacology; Biology","score_opus":0.010949345240291342,"score_gpt":0.24359735170393942,"score_spread":0.23264800646364808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2474094454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972738,0.00007188292,0.0019301375,0.00048791824,0.000039412582,0.00004380029,0.00002644426,0.000005993321,0.00012058695],"genre_scores_gemma":[0.99885833,0.000121929785,0.00031151052,0.00008510651,0.000048605583,2.8694646e-7,0.00003637201,0.0000054333336,0.0005324465],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937165,0.00006507827,0.00019776054,0.00019827313,0.000070351074,0.00009688913],"domain_scores_gemma":[0.9992977,0.00003586868,0.00011047235,0.00044448758,0.00008134191,0.000030125462],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025444388,0.00007159596,0.00015825834,0.0000552167,0.00005582055,0.000016743392,0.00013705979,0.00004915282,0.000034204957],"category_scores_gemma":[0.00010857551,0.000040715608,0.00009436348,0.00025753444,0.00013781394,0.0000032995663,0.00007222746,0.00002057204,0.0000036880954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001450238,0.000015317939,0.04460637,0.0000044792314,0.00047922708,2.1760002e-7,0.000034659868,0.000014150549,0.95311445,0.00038167482,0.00014085925,0.001194065],"study_design_scores_gemma":[0.0003177183,0.00007158576,0.48294482,0.000013596872,0.0012799746,0.0000022192273,0.00015416,0.00017816668,0.5129978,0.00015880243,0.0017175573,0.00016360474],"about_ca_topic_score_codex":0.00017572276,"about_ca_topic_score_gemma":0.00035715385,"teacher_disagreement_score":0.44011667,"about_ca_system_score_codex":0.000005185178,"about_ca_system_score_gemma":0.00001428642,"threshold_uncertainty_score":0.16603343},"labels":[],"label_agreement":null},{"id":"W2474114051","doi":"10.1128/jcm.00950-16","title":"Antimicrobial Stewardship in the Microbiology Laboratory: Impact of Selective Susceptibility Reporting on Ciprofloxacin Utilization and Susceptibility of Gram-Negative Isolates to Ciprofloxacin in a Hospital Setting","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto; St Joseph's Health Centre","funders":"","keywords":"Ciprofloxacin; Medicine; Nitrofurantoin; Antimicrobial stewardship; Antibiotics; Microbiology; Pseudomonas aeruginosa; Internal medicine; Amoxicillin; Antibiotic resistance; Biology; Bacteria","score_opus":0.0445343201637094,"score_gpt":0.3800586259610721,"score_spread":0.3355243057973627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2474114051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981957,0.00005341041,0.0000958604,0.0006964089,0.0002665553,0.00052913406,0.00014913712,0.0000036158633,0.000010169822],"genre_scores_gemma":[0.9990225,0.000050313913,0.00061698066,0.00012470425,0.00013859873,0.0000038569897,0.00002267647,0.000014508248,0.000005852588],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9934505,0.0020206,0.0035646062,0.00057195936,0.000052157444,0.00034017506],"domain_scores_gemma":[0.9942291,0.0010821056,0.0033353514,0.00041911675,0.0008507628,0.00008356902],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.008204431,0.00023829495,0.00092862936,0.00019739073,0.000040873936,0.000013558179,0.00032818285,0.00043302114,0.000012521832],"category_scores_gemma":[0.023282094,0.00014735274,0.00031241565,0.00038637,0.00047833106,0.00002294396,0.00013269234,0.00040321134,0.0000011798409],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00084498187,0.0004068202,0.393332,0.000023345889,0.000041620115,0.0000020602497,0.00035709614,0.0000065352174,0.6038282,0.0000050426997,0.00013785549,0.0010144362],"study_design_scores_gemma":[0.0019589958,0.0047950572,0.6637064,0.0002145789,0.00002407189,0.00003160788,0.00037461263,0.000003898962,0.32848215,0.00013855439,0.00007519966,0.00019488328],"about_ca_topic_score_codex":0.00008303319,"about_ca_topic_score_gemma":0.00070191483,"teacher_disagreement_score":0.27534607,"about_ca_system_score_codex":0.000079605226,"about_ca_system_score_gemma":0.00042418737,"threshold_uncertainty_score":0.98494524},"labels":[],"label_agreement":null},{"id":"W2495800762","doi":"10.1055/s-0042-110772","title":"Therapiedauer bei Bakteriämie","year":2016,"lang":"de","type":"article","venue":"Journal Club AINS","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Gynecology; Political science","score_opus":0.017780260662010394,"score_gpt":0.2659187335426855,"score_spread":0.24813847288067514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2495800762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.962097,0.008813324,0.005360641,0.014598596,0.0068652197,0.0002375802,0.00009027464,0.000031258194,0.0019061328],"genre_scores_gemma":[0.9790999,0.0056034434,0.0005429061,0.001064498,0.005556102,0.0000040877876,0.000024861494,0.00004788758,0.008056255],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99799424,0.00030384157,0.0006387883,0.00040753197,0.00021749767,0.00043810866],"domain_scores_gemma":[0.9984465,0.000049714632,0.00037613526,0.00053091766,0.00029844386,0.00029829296],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000865276,0.00025140517,0.00024287823,0.00007057769,0.00030734143,0.00026652846,0.00038988265,0.00029127573,0.001002855],"category_scores_gemma":[0.0005722175,0.00017253986,0.00029291955,0.00008819009,0.00013535639,0.000017299066,0.00013038733,0.00023276106,0.00054605334],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010997993,0.00014259739,0.003917882,0.000015110562,0.00023944995,0.0000156268,0.00013047621,4.956219e-7,0.91972876,0.00008976517,0.014798141,0.060811713],"study_design_scores_gemma":[0.0013363839,0.00045972213,0.013842258,0.00015380366,0.00010539107,0.00008123009,0.0000876061,0.000009900486,0.048450205,0.00052695966,0.93451583,0.00043068724],"about_ca_topic_score_codex":0.000004719382,"about_ca_topic_score_gemma":0.00001944072,"teacher_disagreement_score":0.9197177,"about_ca_system_score_codex":0.000081292485,"about_ca_system_score_gemma":0.00021892849,"threshold_uncertainty_score":0.99991035},"labels":[],"label_agreement":null},{"id":"W2508489308","doi":"10.1371/journal.pone.0160618","title":"Quality of Care Is Improved by Rapid Short Incubation MALDI-ToF Identification from Blood Cultures as Measured by Reduced Length of Stay and Patient Outcomes as Part of a Multi-Disciplinary Approach to Bacteremia in Pediatric Patients","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"","keywords":"Sepsis; Medicine; Antibiotics; Identification (biology); Internal medicine; Pediatrics; Biology; Microbiology","score_opus":0.03651256239272791,"score_gpt":0.2773271006955877,"score_spread":0.2408145383028598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2508489308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99813706,0.00024519485,0.00003472737,0.000045323086,0.000030051653,0.0006254631,0.00085335725,0.0000066321354,0.00002221557],"genre_scores_gemma":[0.9980486,0.00008033856,0.0007723575,0.00001725854,0.000013688541,0.00005148827,0.00095664826,0.000013511531,0.000046124856],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99822617,0.00018512923,0.000774652,0.00043679628,0.0002574456,0.000119788056],"domain_scores_gemma":[0.9986384,0.00003281509,0.0003902169,0.00039135254,0.00047849983,0.000068734844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022356217,0.00014149735,0.00031719575,0.00005534114,0.000028620527,0.00001102198,0.0001359958,0.00015819122,0.000011572568],"category_scores_gemma":[0.0007575927,0.000117887714,0.000055633984,0.0001004572,0.000047337013,0.000017486875,0.00009779328,0.00004835108,6.849888e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013832148,0.0016616104,0.27085567,0.00011336019,0.00006493694,9.854251e-9,0.001217684,9.763525e-8,0.7245902,5.0883637e-7,0.000041213207,0.0013163903],"study_design_scores_gemma":[0.0006817809,0.00024001962,0.33775684,0.000026849662,0.000054360084,2.087331e-8,0.00031689613,0.0000036866534,0.6608074,0.0000063848365,0.0000032936819,0.00010250627],"about_ca_topic_score_codex":0.00015311979,"about_ca_topic_score_gemma":0.000036115667,"teacher_disagreement_score":0.06690116,"about_ca_system_score_codex":0.000022508859,"about_ca_system_score_gemma":0.000035402958,"threshold_uncertainty_score":0.48073214},"labels":[],"label_agreement":null},{"id":"W2518758813","doi":"10.1016/j.addr.2016.09.003","title":"Review: Antimicrobial efficacy validation using in vitro and in vivo testing methods","year":2016,"lang":"en","type":"review","venue":"Advanced Drug Delivery Reviews","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Innovates","funders":"","keywords":"In vivo; Antimicrobial; In vitro; Biochemical engineering; Biology; Microbiology; Biotechnology; Engineering; Biochemistry","score_opus":0.0813598591794456,"score_gpt":0.40114876515780606,"score_spread":0.31978890597836046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2518758813","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014109964,0.99616057,0.00022512228,0.000013174212,0.00022027237,0.0018813009,0.000032237458,0.000013553758,0.00004276356],"genre_scores_gemma":[0.000009329053,0.96214503,0.037163135,0.00017491395,0.0001299722,0.00008659337,0.00016652314,0.00005002711,0.00007446588],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.995503,0.0015910312,0.0015767093,0.0009092055,0.000067675996,0.0003523491],"domain_scores_gemma":[0.9980983,0.00024955193,0.00083519594,0.00063927623,0.000097082266,0.00008058355],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0024317754,0.00045687324,0.0017389999,0.00015786725,0.000059908078,0.000037834132,0.0002673923,0.00020538038,0.000014167458],"category_scores_gemma":[0.0027369696,0.0003766953,0.0002706902,0.00046317215,0.000059270096,0.000025890717,0.00021399315,0.00023037217,0.00001451641],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007949706,0.000025936206,0.000005605279,0.012363188,0.0000069381067,0.0000012322889,0.00000428955,7.798119e-7,0.20397665,1.7846575e-7,0.00012418308,0.7834831],"study_design_scores_gemma":[0.00026459555,0.000008556493,0.0000028163377,0.07474851,0.00011365792,0.000028075965,0.0000013175367,0.000008451748,0.0041416236,0.0000028905156,0.92026436,0.00041515185],"about_ca_topic_score_codex":0.000020951984,"about_ca_topic_score_gemma":0.000017680455,"teacher_disagreement_score":0.92014015,"about_ca_system_score_codex":0.00010689792,"about_ca_system_score_gemma":0.00015340329,"threshold_uncertainty_score":0.9998685},"labels":[],"label_agreement":null},{"id":"W2528313621","doi":"10.1016/j.nmni.2016.09.015","title":"First case of human bacteraemia by Catabacter hongkongensis in Scandinavia","year":2016,"lang":"en","type":"article","venue":"New Microbes and New Infections","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"GenBank; Accession number (library science); Whole genome sequencing; Strain (injury); Biology; Microbiology; Veterinary medicine; Genome; Genetics; Medicine; Gene","score_opus":0.014694659804800982,"score_gpt":0.2612649949329059,"score_spread":0.24657033512810492,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2528313621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99892485,0.00014781217,0.00027096624,0.00028350015,0.00009801465,0.00009211017,0.000043485885,0.000009512315,0.0001297734],"genre_scores_gemma":[0.9966501,0.00013705617,0.000119599244,0.000035345107,0.000110506415,0.0000032644032,0.00004301308,0.000010537583,0.0028905883],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993766,0.000023493587,0.00021088832,0.00023881419,0.00002123443,0.00012898532],"domain_scores_gemma":[0.99958277,0.000018166495,0.00006264203,0.00020291063,0.000036712325,0.000096807744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000063931206,0.00009741835,0.00011044028,0.000050911425,0.00013846312,0.000020710047,0.00004436603,0.00009253254,0.00013868955],"category_scores_gemma":[0.000052543768,0.0000810708,0.00004481552,0.00008031748,0.00005127808,0.000010288632,0.000068274625,0.000040522802,0.0000045404167],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000068227914,0.000047637954,0.04972914,0.00000944387,0.000011027151,0.0000020289262,0.000089138244,1.7364447e-7,0.9386481,0.000020755228,0.00785599,0.0035797148],"study_design_scores_gemma":[0.0021836595,0.00033447234,0.110477224,0.0001426813,0.000041975676,0.0006076543,0.000065311746,0.0000019858594,0.8022018,0.00012901919,0.08341723,0.00039700692],"about_ca_topic_score_codex":0.0044302,"about_ca_topic_score_gemma":0.013846141,"teacher_disagreement_score":0.13644634,"about_ca_system_score_codex":0.000016292332,"about_ca_system_score_gemma":0.000035349945,"threshold_uncertainty_score":0.7726472},"labels":[],"label_agreement":null},{"id":"W2529446917","doi":"10.1016/j.anaerobe.2016.09.008","title":"The underappreciated in vitro activity of tedizolid against Bacteroides fragilis species, including strains resistant to metronidazole and carbapenems","year":2016,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Food Inspection Agency; Merck","keywords":"Bacteroides fragilis; Microbiology; Ertapenem; Metronidazole; Piperacillin; Antibiotics; Bacteroides; Tazobactam; Piperacillin/tazobactam; Biology; Chemistry; Imipenem; Antibiotic resistance; Bacteria","score_opus":0.024390423032510378,"score_gpt":0.25965114749485196,"score_spread":0.23526072446234159,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2529446917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985999,0.000101858146,0.00015246107,0.0005124733,0.00007675473,0.00014225868,0.000033026212,0.000008382093,0.00037291818],"genre_scores_gemma":[0.9992197,0.00018465129,0.00015506038,0.00006576745,0.00005718281,0.000008264458,0.000016525666,0.00001071894,0.0002821154],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999119,0.00009686918,0.00022379895,0.00027073568,0.00008840159,0.00020122304],"domain_scores_gemma":[0.9994128,0.00006963206,0.00008775582,0.000302821,0.00006327089,0.000063748535],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038389608,0.00010325492,0.00013524003,0.000046126566,0.0001074901,0.00003931992,0.00014841516,0.00007338472,0.0000057094353],"category_scores_gemma":[0.00045533734,0.00007057526,0.000036791684,0.00013289166,0.00009412691,0.000008651572,0.00013139981,0.000050734998,0.0000010092056],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106373416,0.00002646216,0.0025666724,0.000005578352,0.000016672668,4.0499748e-7,0.000055445696,0.0000013262596,0.98362,0.000047074212,0.0000795645,0.013474449],"study_design_scores_gemma":[0.0003079258,0.0000636368,0.14116935,0.000023949506,0.0000040772056,3.514618e-7,0.00014315406,0.000010035813,0.8541632,0.000034311342,0.0039753495,0.00010463163],"about_ca_topic_score_codex":0.00018686746,"about_ca_topic_score_gemma":0.002354379,"teacher_disagreement_score":0.13860267,"about_ca_system_score_codex":0.000045950183,"about_ca_system_score_gemma":0.000050121605,"threshold_uncertainty_score":0.28779757},"labels":[],"label_agreement":null},{"id":"W2529866723","doi":"10.9778/cmajo.20160074","title":"Pathogens and antimicrobial susceptibility profiles in critically ill patients with bloodstream infections: a descriptive study","year":2016,"lang":"en","type":"article","venue":"CMAJ Open","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Kingston General Hospital; Ottawa Hospital; London Health Sciences Centre; Queen's University; Institute for Clinical Evaluative Sciences; University of Calgary; Sunnybrook Health Science Centre; Western University","funders":"Ontario Ministry of Health and Long-Term Care; Institute for Clinical Evaluative Sciences","keywords":"Critically ill; Bloodstream infection; Medicine; Intensive care medicine; Antimicrobial; Descriptive research; Microbiology; Biology; Mathematics; Statistics","score_opus":0.01684863699703334,"score_gpt":0.26781934538785235,"score_spread":0.25097070839081903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2529866723","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982492,0.000004642396,0.000099091805,0.00015226049,0.00005744401,0.0012073746,0.00006657787,0.000010828114,0.00015258521],"genre_scores_gemma":[0.9989087,0.0000043198065,0.00064875226,0.00014447402,0.000031122567,0.00007031057,0.000042579504,0.000013131616,0.00013661663],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988897,0.0001642926,0.00022201712,0.00048761896,0.00006302692,0.00017338202],"domain_scores_gemma":[0.99897754,0.000024028415,0.00005220365,0.0003318055,0.0005482598,0.000066186265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028993993,0.0001231153,0.00014678239,0.000033125743,0.000086366774,0.000106715226,0.00016481025,0.00006558454,0.000036255213],"category_scores_gemma":[0.0010754862,0.00008574283,0.000019052572,0.0000822214,0.00012293406,0.000023519597,0.00027112436,0.00004625049,0.0000060945868],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008379587,0.0008232297,0.7699485,0.0000068335653,0.000013924196,9.925012e-7,0.00016019391,8.260163e-8,0.22686917,0.0000076723445,0.0000583558,0.0020272932],"study_design_scores_gemma":[0.002050212,0.00076133333,0.9840913,0.000039949206,0.00001564509,0.000002086965,0.00052381936,7.4158663e-7,0.01216192,0.00002394419,0.00016192828,0.00016714442],"about_ca_topic_score_codex":0.0005022885,"about_ca_topic_score_gemma":0.005349743,"teacher_disagreement_score":0.21470726,"about_ca_system_score_codex":0.00002572583,"about_ca_system_score_gemma":0.000070307666,"threshold_uncertainty_score":0.3496491},"labels":[],"label_agreement":null},{"id":"W2550172618","doi":"","title":"Analysis of Canada national microbiological monitoring program.","year":2015,"lang":"en","type":"article","venue":"Shipin anquan zhiliang jiance xuebao","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Environmental science; Business; Food science; Chemistry","score_opus":0.056908337116132246,"score_gpt":0.31353189851475805,"score_spread":0.2566235613986258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2550172618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976436,0.00019010685,0.0000761689,0.00019142724,0.00029345273,0.00013731138,0.000052613945,0.000021567357,0.0013937672],"genre_scores_gemma":[0.9971252,0.0000054475713,0.0014263347,0.000073194846,0.00018386992,0.000018469658,0.00026023955,0.00000782218,0.00089938956],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989441,0.000074699696,0.00027579392,0.0003116345,0.00018758263,0.00020619947],"domain_scores_gemma":[0.9991386,0.000017069928,0.00011907817,0.00024538173,0.00036193768,0.00011791898],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004038479,0.0001079091,0.00018260226,0.000056037636,0.000051784686,0.000027914513,0.00020615727,0.00009431476,0.000024116107],"category_scores_gemma":[0.00061365287,0.00010618435,0.00008869695,0.0003876379,0.00006940416,0.0000054108295,0.000054644275,0.000066157736,0.0000029625785],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080503865,0.00017696447,0.3055623,0.000028244045,0.00037846237,0.0000023718337,0.00010922627,0.00050819374,0.6842114,0.00022255046,0.0058512716,0.0028685825],"study_design_scores_gemma":[0.0008998151,0.00032699388,0.7562524,0.00004248805,0.00021005936,0.000007815677,0.00083463854,0.0011181971,0.18151231,0.00015689133,0.057931863,0.0007065365],"about_ca_topic_score_codex":0.006741983,"about_ca_topic_score_gemma":0.042694025,"teacher_disagreement_score":0.502699,"about_ca_system_score_codex":0.0000785597,"about_ca_system_score_gemma":0.00048386026,"threshold_uncertainty_score":0.9998722},"labels":[],"label_agreement":null},{"id":"W2553417633","doi":"10.1093/ofid/ofw172.1583","title":"The Predictive Utility of Screening VRE Swabs in Selecting Empiric Antibiotics for Sterile-Site Infections","year":2016,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Medicine; Antibiotics; Empiric treatment; Pathogenic organism; Intensive care medicine; Microbiology; Empiric therapy; Biology","score_opus":0.01868377796425494,"score_gpt":0.30118275889755663,"score_spread":0.2824989809333017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2553417633","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9905004,0.000074757525,0.0069327736,0.00023931604,0.0002250618,0.00081619713,0.0002371914,0.00002527434,0.0009490583],"genre_scores_gemma":[0.9994298,0.000028155533,0.000084324696,0.000047314843,0.00006355495,0.00003362539,0.000068224814,0.000017805087,0.0002271584],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99887663,0.00011881368,0.00034405052,0.00033205608,0.00007182469,0.00025661098],"domain_scores_gemma":[0.99896985,0.00019244762,0.00019432673,0.00035541612,0.00022266325,0.00006531415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035968816,0.0001249663,0.00015468741,0.00004460285,0.00037067587,0.000115878654,0.00021883695,0.00007834568,0.000020866128],"category_scores_gemma":[0.001443835,0.0000887966,0.00010174677,0.00017405963,0.000114542396,0.00002906419,0.00024713873,0.000045512817,0.0000021693138],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001699523,0.00017538892,0.92365897,0.000021755253,0.000042728734,1.3026151e-7,0.0000275894,0.000014029563,0.06452143,0.00006649178,0.000729299,0.010572238],"study_design_scores_gemma":[0.0016498601,0.0006232435,0.9530228,0.00012227774,0.000052661868,0.0000059087465,0.00023464976,0.0004479337,0.034903757,0.00073072687,0.0079471655,0.00025901597],"about_ca_topic_score_codex":0.0001454986,"about_ca_topic_score_gemma":0.0028185297,"teacher_disagreement_score":0.029617675,"about_ca_system_score_codex":0.000022164852,"about_ca_system_score_gemma":0.00010971858,"threshold_uncertainty_score":0.36210206},"labels":[],"label_agreement":null},{"id":"W2556251444","doi":"10.1177/2211068216680207","title":"New Technologies for Rapid Bacterial Identification and Antibiotic Resistance Profiling","year":2016,"lang":"en","type":"review","venue":"SLAS TECHNOLOGY","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Profiling (computer programming); Antibiotic resistance; Antibiotics; Identification (biology); Turnaround time; Infectious disease (medical specialty); Leverage (statistics); Risk analysis (engineering); Computational biology; Disease; Medicine; Biology; Computer science; Microbiology; Artificial intelligence; Pathology","score_opus":0.025075220014678823,"score_gpt":0.3090379440397515,"score_spread":0.28396272402507267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2556251444","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00033780816,0.99345577,0.003109902,0.00043366395,0.00065614283,0.0014299122,0.0001372524,0.00036009547,0.00007947754],"genre_scores_gemma":[0.00048297728,0.9869678,0.008831889,0.000004871943,0.0002953605,0.00014571015,0.00044935307,0.000066953064,0.0027550913],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99789786,0.000054618347,0.0006722119,0.0009650954,0.00006905371,0.00034115947],"domain_scores_gemma":[0.99831575,0.000051798837,0.00051232614,0.0009508903,0.00012831147,0.000040951298],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00031713082,0.0003543206,0.00072519464,0.00031673527,0.00014103684,0.000085436965,0.0005230096,0.0012692316,0.000009859489],"category_scores_gemma":[0.0013525984,0.00029906692,0.00017404646,0.00025997244,0.00024475675,0.000008266534,0.00026487545,0.00016793502,0.000023521448],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016590007,0.000011806407,0.0000067102224,0.0020593205,0.000059930488,4.5631847e-7,0.0000019231877,2.0070121e-9,0.093488865,0.001810247,0.0012059492,0.9013382],"study_design_scores_gemma":[0.00025253918,0.00007802016,0.0000032445687,0.0014214794,0.0001158921,0.000019616737,0.000021329945,2.3101606e-7,0.028644415,0.0013475578,0.9677535,0.00034211855],"about_ca_topic_score_codex":9.657844e-7,"about_ca_topic_score_gemma":0.000017017528,"teacher_disagreement_score":0.9665476,"about_ca_system_score_codex":0.00003922285,"about_ca_system_score_gemma":0.0002493387,"threshold_uncertainty_score":0.9999461},"labels":[],"label_agreement":null},{"id":"W2560692557","doi":"10.1093/ofid/ofw172.68","title":"Evaluation of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry for Microbiological Typing in a Serratia marcescens Outbreak","year":2016,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Children's Hospital; Vancouver Coastal Health","funders":"","keywords":"Serratia marcescens; Medicine; Outbreak; Mass spectrometry; Typing; Microbiology; Chromatography; Virology; Escherichia coli; Biology; Chemistry","score_opus":0.02333438991146998,"score_gpt":0.30505765924165423,"score_spread":0.28172326933018427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560692557","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99479836,0.00008943394,0.003529832,0.00012024743,0.00009809355,0.0008292239,0.00017111735,0.000012697981,0.00035100177],"genre_scores_gemma":[0.9986102,0.00001672134,0.0005452457,0.000029722718,0.000030479181,0.00007725528,0.00036824503,0.000013115681,0.0003090167],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989058,0.0002118236,0.0003518187,0.00028545997,0.00009417265,0.00015091755],"domain_scores_gemma":[0.99898916,0.000047965103,0.00022710128,0.00023641341,0.0004578891,0.000041492065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005874875,0.000106117244,0.00017822496,0.00008538549,0.000059314305,0.00003691791,0.00016026692,0.00010348578,0.00023256821],"category_scores_gemma":[0.00097104756,0.000084389576,0.00008252784,0.00018007366,0.00005461807,0.000022171,0.0000909511,0.000021157532,0.000009235047],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000116682495,0.00019955184,0.13141225,0.000024703972,0.00003453975,6.231008e-8,0.000008679445,0.000026264479,0.8651991,0.000058143913,0.0002472137,0.002672808],"study_design_scores_gemma":[0.005146129,0.0006719633,0.5603231,0.00022941107,0.00028264022,0.000010990494,0.00011704313,0.0009666335,0.42834106,0.0029230204,0.0005364093,0.00045154858],"about_ca_topic_score_codex":0.000027314652,"about_ca_topic_score_gemma":0.0001473217,"teacher_disagreement_score":0.43685803,"about_ca_system_score_codex":0.000067361245,"about_ca_system_score_gemma":0.00013522629,"threshold_uncertainty_score":0.34413072},"labels":[],"label_agreement":null},{"id":"W2561677510","doi":"10.1128/cmr.00066-16","title":"Antimicrobial Stewardship: How the Microbiology Laboratory Can Right the Ship","year":2017,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":220,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Antimicrobial stewardship; Stewardship (theology); Psychological intervention; Clinical microbiology; Antimicrobial; Intensive care medicine; Medicine; Infectious disease (medical specialty); Microbiology; Nursing; Disease; Antibiotics; Antibiotic resistance; Biology; Political science; Internal medicine","score_opus":0.180927774377842,"score_gpt":0.4134251708945823,"score_spread":0.2324973965167403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2561677510","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00021833382,0.99060434,0.000012560656,0.0020046595,0.0034499376,0.0025495565,0.0010162739,0.0000316519,0.00011268635],"genre_scores_gemma":[0.0000722687,0.9881465,0.00012671437,0.0021750827,0.002653079,0.00021196643,0.0030899325,0.000088209774,0.0034362464],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.987888,0.007414384,0.0022964068,0.0016351637,0.000023123379,0.00074297277],"domain_scores_gemma":[0.9921073,0.0006593119,0.002722931,0.004094188,0.00025944418,0.00015682432],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0065003857,0.0009029638,0.0031468177,0.00005567281,0.0008922997,0.00028214336,0.003542803,0.0019838144,0.00010638843],"category_scores_gemma":[0.004796001,0.00045343422,0.002114136,0.00015392137,0.0024435595,0.0000069444072,0.0009965941,0.0015893155,0.0006216801],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003234067,0.00019969732,0.00012035954,0.0038068024,0.0007467962,0.000005647896,0.000029123814,4.5431182e-8,0.03122139,0.00006577111,0.36771125,0.59606075],"study_design_scores_gemma":[0.00021711182,0.00012466761,0.0000103204075,0.001216977,0.0006567077,0.0002628002,0.00000421007,6.215099e-8,0.000049579266,0.0000063393613,0.9969111,0.0005401255],"about_ca_topic_score_codex":0.000010202752,"about_ca_topic_score_gemma":0.00022067018,"teacher_disagreement_score":0.62919986,"about_ca_system_score_codex":0.00006173446,"about_ca_system_score_gemma":0.000985498,"threshold_uncertainty_score":0.99979174},"labels":[],"label_agreement":null},{"id":"W2563546291","doi":"10.1093/ofid/ofw172.155","title":"Vancomycin-Resistant Enterococcus-Positive Blood Cultures: Results From a Province-Wide Multisite Case Series Analysis in Ontario, Canada, January 2009-December 2013","year":2016,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Ottawa; Public Health Ontario; University of Toronto","funders":"","keywords":"Medicine; Vancomycin-resistant Enterococcus; Vancomycin; Enterococcus; Blood culture; Gram-positive bacterial infections; Series (stratigraphy); Internal medicine; Antibiotics; Microbiology; Staphylococcus aureus","score_opus":0.007082238445829138,"score_gpt":0.2311573172358783,"score_spread":0.22407507879004915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2563546291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937618,0.00012144938,0.000051872514,0.0004075252,0.00015192888,0.0006688796,0.0033949018,0.00001982412,0.0014218354],"genre_scores_gemma":[0.99364656,0.00002852295,0.000096660486,0.0003274255,0.00004113405,0.00008912417,0.0013853831,0.000018066115,0.0043671504],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980826,0.00017293001,0.0005019704,0.0007522177,0.00013876156,0.00035154144],"domain_scores_gemma":[0.9987062,0.00009467244,0.00022852697,0.00060676946,0.00015766815,0.00020614856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011111565,0.00026142635,0.00032604052,0.00007627166,0.0002299271,0.00021097776,0.00027349102,0.00010647358,0.0002028987],"category_scores_gemma":[0.00035991467,0.00020642053,0.00014258143,0.00016517563,0.00006980424,0.000062387975,0.00032287958,0.000084294916,0.0000087200615],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009254729,0.00041731304,0.9336792,0.000007129428,0.0006424707,0.00046506815,0.000113215654,0.000038705093,0.043418422,0.000009483756,0.019879963,0.0004035126],"study_design_scores_gemma":[0.0042900313,0.00029223113,0.9623439,0.000121952566,0.00068722747,0.00007786492,0.00042297257,0.000010623507,0.014824721,0.00011973772,0.016121048,0.00068773003],"about_ca_topic_score_codex":0.9720684,"about_ca_topic_score_gemma":0.99979573,"teacher_disagreement_score":0.028664619,"about_ca_system_score_codex":0.00021972288,"about_ca_system_score_gemma":0.00061797106,"threshold_uncertainty_score":0.8417585},"labels":[],"label_agreement":null},{"id":"W2565087048","doi":"10.3168/jds.2016-12020","title":"Identification of bovine-associated coagulase-negative staphylococci by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using a direct transfer protocol","year":2016,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Prince Edward Island","funders":"Agriculture and Agri-Food Canada; Canadian Dairy Commission; Atlantic Veterinary College; Dairy Farmers of Canada; Université de Montréal; Universiteit Gent; University of Calgary","keywords":"rpoB; Mass spectrometry; Coagulase; Database; Matrix-assisted laser desorption/ionization; Identification (biology); Biology; 16S ribosomal RNA; Computational biology; Chromatography; Staphylococcus; Chemistry; Genetics; Bacteria; Computer science; Staphylococcus aureus; Desorption; Ecology","score_opus":0.015083109023150071,"score_gpt":0.28680960394815996,"score_spread":0.2717264949250099,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2565087048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97609514,0.000009336966,0.02161283,0.000051091392,0.00009292389,0.0020332187,0.000067912486,0.000005615553,0.000031945958],"genre_scores_gemma":[0.9980905,0.0000036978395,0.0015010069,0.0000075950184,0.000040178442,0.000059698225,0.0000073189376,0.000009494724,0.0002804757],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982443,0.00016452507,0.0008007215,0.00023284338,0.00040052296,0.00015708142],"domain_scores_gemma":[0.9978008,0.00005143811,0.00079853245,0.00022144556,0.0010489073,0.000078827514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014419261,0.000106229716,0.00020735408,0.0001984957,0.00010431113,0.000046329133,0.00029525408,0.00008119284,0.00005273062],"category_scores_gemma":[0.001195818,0.00008036712,0.000100094,0.00075055123,0.00028782198,0.00007553745,0.000026238573,0.000055411376,0.0000020310063],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014380025,0.00014943742,0.0046575083,0.000021668167,0.000024032986,3.6143314e-7,0.000054389686,0.00002162132,0.99459577,0.0000051278344,0.00010421237,0.00022205588],"study_design_scores_gemma":[0.00081110105,0.00026251277,0.022748431,0.00009051459,0.000024827905,0.000006250386,0.000039867995,0.00030287748,0.9755323,0.000043981297,0.000042002543,0.000095363444],"about_ca_topic_score_codex":0.0000064742017,"about_ca_topic_score_gemma":0.0000037854031,"teacher_disagreement_score":0.021995408,"about_ca_system_score_codex":0.000094911324,"about_ca_system_score_gemma":0.00030344294,"threshold_uncertainty_score":0.3277276},"labels":[],"label_agreement":null},{"id":"W2570457229","doi":"10.1186/s13756-016-0162-z","title":"Bacterial etiology of bloodstream infections and antimicrobial resistance in Dhaka, Bangladesh, 2005–2014","year":2017,"lang":"en","type":"article","venue":"Antimicrobial Resistance and Infection Control","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Global Affairs Canada; Department for International Development; International Centre for Diarrhoeal Disease Research, Bangladesh; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Medicine; Antibiotics; Blood culture; Medical microbiology; Antimicrobial; Antibiotic resistance; Bacteremia; Multiple drug resistance; Drug resistance; Salmonella typhi; Microbiology; Gram-positive bacteria; Etiology; Biology; Internal medicine; Immunology","score_opus":0.008180135778360728,"score_gpt":0.24848752088798773,"score_spread":0.24030738510962701,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2570457229","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99705225,0.00012557313,0.0003465734,0.00070966827,0.00048192486,0.000288546,0.00009193276,0.000014791652,0.00088876294],"genre_scores_gemma":[0.9974651,0.001046086,0.00022723735,0.0001457707,0.00028359177,0.000014429899,0.000067123554,0.000016579392,0.00073409494],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998618,0.00013939913,0.00043851204,0.00047676117,0.00005468417,0.00027262053],"domain_scores_gemma":[0.9989337,0.000040620384,0.00036300067,0.00045220487,0.00014035606,0.00007014423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039806095,0.00018867523,0.00032403748,0.000097676086,0.00038736154,0.00014929961,0.00012271799,0.00024345506,0.00004275388],"category_scores_gemma":[0.00047926564,0.00020639514,0.000076694596,0.00004628155,0.00038610937,0.000045514647,0.00007617822,0.0001316974,0.000004099621],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033396704,0.00011084239,0.11385291,0.00009476177,0.00003445805,0.000001278901,0.000030069403,0.0000021707378,0.8802291,0.00018644558,0.0048805983,0.00024336495],"study_design_scores_gemma":[0.0068933563,0.00021117339,0.7703473,0.0002789767,0.00009518488,0.000025570429,0.000017996857,0.000017848572,0.17466529,0.00014639641,0.046720143,0.00058077485],"about_ca_topic_score_codex":0.00048150355,"about_ca_topic_score_gemma":0.023065208,"teacher_disagreement_score":0.70556384,"about_ca_system_score_codex":0.000014785392,"about_ca_system_score_gemma":0.000076206234,"threshold_uncertainty_score":0.9947613},"labels":[],"label_agreement":null},{"id":"W2572589733","doi":"10.1111/acem.13161","title":"A Quality Improvement Initiative to Decrease the Rate of Solitary Blood Cultures in the Emergency Department","year":2017,"lang":"en","type":"article","venue":"Academic Emergency Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Medicine; Emergency department; Intervention (counseling); Quality management; Emergency medicine; Nursing; Operations management","score_opus":0.0684788039680762,"score_gpt":0.40021673619151704,"score_spread":0.33173793222344083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2572589733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899062,0.0009986627,0.00004467255,0.0067798863,0.00057591015,0.00055393396,0.000026215783,0.0000046921527,0.0011098093],"genre_scores_gemma":[0.9958781,0.002366041,0.000027883318,0.0008865966,0.00046034818,0.00007755144,0.00008376772,0.000007103413,0.00021259589],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998147,0.00030038974,0.000844063,0.00031423877,0.0001808662,0.00021341373],"domain_scores_gemma":[0.9984653,0.00003342973,0.00042160953,0.0008189438,0.0001468794,0.00011386571],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002203615,0.00014934632,0.00017673925,0.000026040363,0.00023084086,0.0000016482529,0.0007828138,0.00010413393,0.00035333945],"category_scores_gemma":[0.005452493,0.000084032625,0.00006986592,0.000088731875,0.00012285425,0.0000089774185,0.00013557075,0.00020384291,0.0000039009788],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008969174,0.00013118635,0.12180145,0.00004637496,0.00007055137,9.3202516e-7,0.0024548345,0.0000030407916,0.8611812,0.0003654657,0.012749409,0.0011058786],"study_design_scores_gemma":[0.0008810027,0.00040946013,0.95052767,0.000047945603,0.00008267319,0.0000020107927,0.0024473404,0.000009918927,0.037100665,0.0020309754,0.006262514,0.00019782718],"about_ca_topic_score_codex":0.0010229945,"about_ca_topic_score_gemma":0.0008659477,"teacher_disagreement_score":0.82872623,"about_ca_system_score_codex":0.000007300457,"about_ca_system_score_gemma":0.000054273078,"threshold_uncertainty_score":0.6527538},"labels":[],"label_agreement":null},{"id":"W2574130726","doi":"10.1007/s10096-017-2906-y","title":"MALDI-ToF short incubation identification from blood cultures is associated with reduced length of hospitalization and a decrease in bacteremia associated mortality","year":2017,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; London Health Sciences Centre","funders":"","keywords":"Bacteremia; Medicine; Internal medicine; Incubation; Incubation period; Antibiotics; Surgery; Gastroenterology; Microbiology; Biology","score_opus":0.02526376274824588,"score_gpt":0.3227821312521624,"score_spread":0.2975183685039165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2574130726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99911404,0.00012526859,0.00007146339,0.00005876448,0.00022667136,0.00014297002,0.00018000594,0.000009655568,0.000071172566],"genre_scores_gemma":[0.9989901,0.00016706086,0.00003224352,0.00008629355,0.00013885793,0.0000014548427,0.0005471373,0.000017635502,0.000019177385],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972142,0.0010910246,0.0011774412,0.00032521033,0.00006432741,0.00012781953],"domain_scores_gemma":[0.99712867,0.00011052636,0.0017494754,0.00035589415,0.0005251572,0.0001302583],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0013483643,0.00014904804,0.0003909541,0.0000554023,0.000130742,0.00008638022,0.00023439131,0.00013725756,0.000021166765],"category_scores_gemma":[0.00980299,0.00012879238,0.00014410233,0.00005582848,0.0003030084,0.000037692767,0.0000833353,0.00017241239,0.0000010097248],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001121754,0.00048441594,0.7040146,0.0000053858485,0.00027987888,0.0000069279236,0.000046905734,0.0000036959036,0.29439387,0.0000022112513,0.00007352669,0.00057641347],"study_design_scores_gemma":[0.0016314959,0.00049028895,0.988472,0.00010884255,0.0002999657,0.000010741335,0.000022923005,0.000007860707,0.008734896,0.00006224103,0.000025714857,0.00013302924],"about_ca_topic_score_codex":0.000039445487,"about_ca_topic_score_gemma":0.00019454895,"teacher_disagreement_score":0.28565896,"about_ca_system_score_codex":0.000017284034,"about_ca_system_score_gemma":0.00010680943,"threshold_uncertainty_score":0.99853784},"labels":[],"label_agreement":null},{"id":"W2576196461","doi":"10.1016/j.mimet.2017.01.009","title":"Custom database development and biomarker discovery methods for MALDI-TOF mass spectrometry-based identification of high-consequence bacterial pathogens","year":2017,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Biomarker discovery; Mass spectrometry; Identification (biology); Biomarker; Computational biology; Clinical microbiology; Matrix-assisted laser desorption/ionization; Biology; Microbiology; Chromatography; Chemistry; Proteomics; Genetics","score_opus":0.06247147108426338,"score_gpt":0.39040969067189146,"score_spread":0.3279382195876281,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2576196461","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.53166616,0.00012529443,0.46750212,0.000108885804,0.00038281034,0.0001251898,0.00008323669,0.0000024067813,0.000003912796],"genre_scores_gemma":[0.40405062,0.0000357079,0.5956595,0.00002816494,0.000090945665,0.000005604489,0.00007954856,0.000007998605,0.000041940315],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99766386,0.00078826124,0.00092613866,0.00036185773,0.000060423186,0.00019947356],"domain_scores_gemma":[0.9973619,0.00030944098,0.0014010572,0.0004990924,0.0003387692,0.00008973352],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0055037537,0.00017570214,0.0004080099,0.000093446826,0.00020283673,0.0001571635,0.0004447402,0.00019984426,0.000024346815],"category_scores_gemma":[0.004942999,0.00013560079,0.00016256212,0.000052819803,0.00029697848,0.000032709268,0.00013650882,0.00011218063,5.7160275e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044837347,0.000081503276,0.0005473605,0.000051981377,0.0000693054,0.0000022238025,0.000010557424,0.000001444661,0.97265613,0.00006078332,0.000035954552,0.026034372],"study_design_scores_gemma":[0.00074216945,0.00020183745,0.033843793,0.000036224308,0.00005692165,0.000053994572,0.000024024906,0.0000269629,0.9615234,0.0002710886,0.0030577418,0.00016184495],"about_ca_topic_score_codex":0.000005500291,"about_ca_topic_score_gemma":0.000002292954,"teacher_disagreement_score":0.12815736,"about_ca_system_score_codex":0.000030629944,"about_ca_system_score_gemma":0.00016403904,"threshold_uncertainty_score":0.5917589},"labels":[],"label_agreement":null},{"id":"W2592244930","doi":"10.1186/s40168-017-0237-y","title":"Normalization and microbial differential abundance strategies depend upon data characteristics","year":2017,"lang":"en","type":"article","venue":"Microbiome","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2161,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Environmental Health Sciences; National Center for Advancing Translational Sciences; National Human Genome Research Institute; National Institutes of Health; Centre Technologique des Résidus Industriels","keywords":"Relative species abundance; Normalization (sociology); Taxon; Biology; Abundance (ecology); Relative abundance distribution; Ecology; Statistics; Mathematics","score_opus":0.029302688325818622,"score_gpt":0.28812216048501976,"score_spread":0.25881947215920115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2592244930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99698836,0.000043244472,0.0018271854,0.00010713852,0.00042499768,0.00010451464,0.0004064154,0.000014140283,0.000084004154],"genre_scores_gemma":[0.9961454,0.000059045775,0.0004372184,0.000032258005,0.00023592601,0.0000019261968,0.0027641226,0.000014262761,0.00030980047],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991994,0.000030290308,0.00018742926,0.00039203762,0.000037344435,0.00015350862],"domain_scores_gemma":[0.99874556,0.0000029899,0.00016770721,0.0009780169,0.000061731494,0.000044000342],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001235101,0.00011713271,0.000110165136,0.000022603039,0.0003582836,0.00064507587,0.00048324867,0.00010170788,0.00003753659],"category_scores_gemma":[0.00009671442,0.00012265627,0.000020113695,0.000015408272,0.00009316977,0.00003400956,0.0004907531,0.000048860722,0.000012415405],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027454265,0.00002828001,0.0024693434,0.000029630162,0.00001323315,9.019104e-7,0.000027546117,1.4581379e-7,0.9952282,0.00004590229,0.00033409687,0.0017952918],"study_design_scores_gemma":[0.0014893818,0.00011397295,0.49167168,0.00006966762,0.000070614224,0.000091222595,0.00009402164,0.0005097496,0.44997635,0.00006505377,0.055100556,0.00074773177],"about_ca_topic_score_codex":0.000065628556,"about_ca_topic_score_gemma":0.00035028317,"teacher_disagreement_score":0.54525185,"about_ca_system_score_codex":0.000006009064,"about_ca_system_score_gemma":0.000041485993,"threshold_uncertainty_score":0.62204814},"labels":[],"label_agreement":null},{"id":"W2592555772","doi":"10.1016/j.mimet.2017.03.001","title":"Identification of microorganisms grown on chromogenic media by MALDI-TOF MS","year":2017,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Chromogenic; Agar; Microbiology; Chromatography; Microorganism; Matrix-assisted laser desorption/ionization; Mass spectrometry; Identification (biology); Chemistry; Biology; Bacteria; Desorption","score_opus":0.031669583910729694,"score_gpt":0.3529686995765154,"score_spread":0.3212991156657857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2592555772","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99134994,0.00036048936,0.0070427656,0.0003283696,0.0006615416,0.00009378846,0.00004707883,0.0000043007144,0.00011173554],"genre_scores_gemma":[0.97575563,0.00014871068,0.023457576,0.00010832055,0.00025414635,0.0000014508389,0.000034719375,0.000011838366,0.00022760732],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982661,0.00045904442,0.00078583654,0.00025146926,0.000078983016,0.00015858372],"domain_scores_gemma":[0.9976352,0.00011073649,0.0013545027,0.0005217123,0.00029474255,0.000083137675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023279614,0.00013997532,0.0003133239,0.000044004373,0.0001417212,0.00006845607,0.00066933647,0.00024733378,0.00009906773],"category_scores_gemma":[0.0034137554,0.00010557875,0.00021456319,0.00003783773,0.00023734476,0.000010518917,0.000119677425,0.0001771419,0.000007847029],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010391235,0.00013260767,0.0009021556,0.000009742401,0.000043711876,0.0000010754923,0.000024185736,7.969716e-7,0.9887062,0.00003309845,0.0014286203,0.008613915],"study_design_scores_gemma":[0.0003922347,0.00033942526,0.026833097,0.000019710544,0.000028469562,0.000053866494,0.000023725452,0.0000016622051,0.9666645,0.0002681306,0.0052634967,0.00011168014],"about_ca_topic_score_codex":0.000004390842,"about_ca_topic_score_gemma":0.000001932045,"teacher_disagreement_score":0.025930941,"about_ca_system_score_codex":0.000019909729,"about_ca_system_score_gemma":0.000043493783,"threshold_uncertainty_score":0.43053764},"labels":[],"label_agreement":null},{"id":"W2594370240","doi":"10.1016/j.anaerobe.2017.03.005","title":"Characterization of isolates of Eisenbergiella tayi , a strictly anaerobic Gram-stain variable bacillus recovered from human clinical materials in Canada","year":2017,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Saint-Boniface; BC Centre for Disease Control; St. Boniface Hospital; University of Manitoba; Public Health Agency of Canada","funders":"Leibniz-Gemeinschaft","keywords":"Biology; 16S ribosomal RNA; Obligate; Gram staining; Microbiology; Obligate anaerobe; Gram; Genome; In silico; Stain; Bacillus (shape); DNA sequencing; Anaerobic exercise; Ribosomal RNA; DNA; Gene; Bacteria; Genetics; Staining; Botany","score_opus":0.02469357264103746,"score_gpt":0.27771294768697413,"score_spread":0.2530193750459367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2594370240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987171,0.000015968044,0.00007718197,0.000044126788,0.00035805773,0.00016478306,0.00047544448,0.0000037065067,0.0001436034],"genre_scores_gemma":[0.9977164,0.00007264467,0.00046114894,0.000050676157,0.00010329907,0.0000051071565,0.0014380108,0.000013585158,0.00013910673],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985079,0.00015007074,0.0007723748,0.00032282365,0.00008205833,0.00016475031],"domain_scores_gemma":[0.9984079,0.000027377406,0.00066600105,0.0007039305,0.00014041323,0.000054356766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040330333,0.00012011708,0.00032171592,0.000030791616,0.00008407678,0.00004534449,0.0003238583,0.00014204133,0.0001469081],"category_scores_gemma":[0.0004787663,0.0001293417,0.00004781756,0.00005550564,0.00006656798,0.000014271771,0.00011850077,0.000059601076,0.0000011669348],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052525844,0.000054287982,0.05876644,0.000019992007,0.000028168139,9.239928e-7,0.000017383147,0.000004089549,0.9403928,0.000072406954,0.00007463792,0.0005163484],"study_design_scores_gemma":[0.00062995654,0.00010220897,0.37693194,0.000044522847,0.000016455107,3.4190015e-7,0.00004884643,0.00003252578,0.62107795,0.000104247534,0.0008604383,0.00015057041],"about_ca_topic_score_codex":0.63252735,"about_ca_topic_score_gemma":0.5149442,"teacher_disagreement_score":0.31931484,"about_ca_system_score_codex":0.00003854698,"about_ca_system_score_gemma":0.00038053215,"threshold_uncertainty_score":0.52744013},"labels":[],"label_agreement":null},{"id":"W2601942948","doi":"10.1016/j.ijms.2017.03.006","title":"Rapid determination of AB 5 enterotoxins using membrane electrospray ionization mass spectrometry","year":2017,"lang":"en","type":"article","venue":"International Journal of Mass Spectrometry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministère de l'Économie, de la Science et de l'Innovation - Québec","keywords":"Chemistry; Electrospray ionization; Chromatography; Mass spectrometry; Enterotoxin; Electrospray; Biochemistry; Escherichia coli","score_opus":0.02064108111297382,"score_gpt":0.29914797373732793,"score_spread":0.27850689262435413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2601942948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87799335,0.00014469711,0.11938354,0.00033250172,0.0012975339,0.00011145757,0.000020886138,0.000006817814,0.00070924324],"genre_scores_gemma":[0.95746315,0.0002670092,0.04109861,0.00004218305,0.0009239271,0.0000013189454,0.00003770937,0.00002314759,0.00014294458],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982269,0.000090270085,0.00071745785,0.00024266867,0.0005303003,0.00019239572],"domain_scores_gemma":[0.9970271,0.00003130517,0.0015382686,0.0004046967,0.0009174117,0.00008120995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069979107,0.00016170822,0.00025575774,0.000414604,0.00012954719,0.00021785138,0.0008671815,0.00013267864,0.00023553595],"category_scores_gemma":[0.0011656088,0.00016494244,0.00021703118,0.00011324891,0.00009804493,0.00007519382,0.00008691758,0.00018174003,0.000003554131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016962674,0.00010528137,0.01297893,0.000015598465,0.0001280613,0.000011503925,0.000019587289,0.000013221416,0.9849427,0.00015915865,0.000036942612,0.0014193875],"study_design_scores_gemma":[0.00097058876,0.00032151837,0.034577828,0.000063582454,0.000041842406,0.00015832065,0.000043411364,0.0004941461,0.96237755,0.00043723147,0.00035610847,0.00015786201],"about_ca_topic_score_codex":0.000014238335,"about_ca_topic_score_gemma":0.0000070183087,"teacher_disagreement_score":0.07946982,"about_ca_system_score_codex":0.00014619698,"about_ca_system_score_gemma":0.00012677851,"threshold_uncertainty_score":0.67261577},"labels":[],"label_agreement":null},{"id":"W2605148313","doi":"10.1016/j.vetmic.2017.03.036","title":"Species level identification of coagulase negative Staphylococcus spp. from buffalo using matrix-assisted laser desorption ionization–time of flight mass spectrometry and cydB real-time quantitative PCR","year":2017,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Division of Graduate Education; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; University of Guelph","keywords":"Biology; Staphylococcus epidermidis; Staphylococcus; Microbiology; Mass spectrometry; Matrix-assisted laser desorption/ionization; Species identification; Veterinary medicine; Bacteria; Staphylococcus aureus; Chromatography; Chemistry; Genetics; Medicine","score_opus":0.05447109163755256,"score_gpt":0.30461520669839326,"score_spread":0.2501441150608407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2605148313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995324,0.00010692865,0.0027592226,0.00003601633,0.0001465011,0.00026385757,0.0012999971,0.000013331241,0.000050123515],"genre_scores_gemma":[0.98416936,0.00009355514,0.013972887,0.0000062876366,0.00007006468,0.0000051247093,0.0010912541,0.000021072767,0.0005703771],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998439,0.00026697363,0.00058570935,0.00047720404,0.000053393313,0.0001776944],"domain_scores_gemma":[0.998086,0.000078378354,0.0008815891,0.00058954937,0.00031775172,0.000046732286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029510958,0.00019283687,0.00034615034,0.00011663524,0.00020750685,0.00005763538,0.00025402315,0.0002102311,0.00015626394],"category_scores_gemma":[0.00037648657,0.00020251158,0.00008307095,0.0000934532,0.00049727864,0.000031164047,0.00017263928,0.00006434896,0.000020235317],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033446352,0.00008610342,0.0017390402,0.000043827073,0.00009556386,0.0000026086705,0.00012923147,0.000014463398,0.9973983,0.000030552706,0.00007558276,0.000050263196],"study_design_scores_gemma":[0.0005780072,0.0003916059,0.08755869,0.000039320592,0.000049122064,0.000021329033,0.00015185915,0.00036402923,0.91049236,0.00008624628,0.000075501026,0.00019192953],"about_ca_topic_score_codex":0.00031126587,"about_ca_topic_score_gemma":0.000022383587,"teacher_disagreement_score":0.086905934,"about_ca_system_score_codex":0.00003505423,"about_ca_system_score_gemma":0.000057260568,"threshold_uncertainty_score":0.82581824},"labels":[],"label_agreement":null},{"id":"W2610840575","doi":"10.1111/trf.14147","title":"Optimization of cord blood unit sterility testing: impact of dilution, analysis delay, and inhibitory substances","year":2017,"lang":"en","type":"article","venue":"Transfusion","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Héma-Québec","funders":"","keywords":"Staphylococcus epidermidis; Cord blood; Bacteroides fragilis; Sterility; Streptococcus agalactiae; Microbiology; Chemistry; Chromatography; Staphylococcus aureus; Andrology; Bacteria; Biology; Streptococcus; Medicine; Immunology; Antibiotics","score_opus":0.03444755997921741,"score_gpt":0.30254072398316406,"score_spread":0.26809316400394667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2610840575","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943936,0.000084842075,0.0052104094,0.000010545991,0.000033171844,0.000096281336,0.000033312925,0.000005664126,0.00013221384],"genre_scores_gemma":[0.99842596,0.00011897477,0.0013317165,0.0000016325853,0.000022258302,0.0000016092544,0.00007280637,0.000004589439,0.0000204605],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993771,0.000050823055,0.00024161255,0.00019216324,0.000068861744,0.00006946298],"domain_scores_gemma":[0.9991559,0.000015106415,0.00020133184,0.0003577036,0.00023362471,0.00003633775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000230376,0.000073475145,0.0001488999,0.000044204982,0.00012698345,0.000021709586,0.00009964551,0.00007170812,0.000023789295],"category_scores_gemma":[0.00019619538,0.00006734476,0.00008316822,0.00010048814,0.00013857213,0.00001079891,0.000025925672,0.00002896108,8.4201275e-8],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013083767,0.000053592277,0.35294887,0.000022101935,0.000068162604,1.1207153e-7,0.00003943189,0.0007130566,0.6450884,0.0000020032505,0.0000013039264,0.0009321305],"study_design_scores_gemma":[0.00035716977,0.00024961497,0.8937079,0.000016349104,0.00019885048,0.000001491577,0.000023140434,0.0020084458,0.10335035,0.000011278033,0.000004091221,0.000071372415],"about_ca_topic_score_codex":0.0007699029,"about_ca_topic_score_gemma":0.00050170533,"teacher_disagreement_score":0.54173803,"about_ca_system_score_codex":0.000003666109,"about_ca_system_score_gemma":0.000036479185,"threshold_uncertainty_score":0.27462393},"labels":[],"label_agreement":null},{"id":"W2614278540","doi":"10.1017/cem.2017.109","title":"LO47: Use of C-reactive protein can safely decrease the number of emergency department patients with sepsis who require blood cultures","year":2017,"lang":"en","type":"article","venue":"Canadian Journal of Emergency Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital","funders":"","keywords":"Medicine; Sepsis; Emergency department; Septic shock; Blood culture; Prospective cohort study; Internal medicine; C-reactive protein; Emergency medicine; Antibiotics; Intensive care medicine; Inflammation","score_opus":0.05188229280345571,"score_gpt":0.32259885107975267,"score_spread":0.270716558276297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2614278540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99747735,0.00016975612,0.000018212619,0.0009001056,0.0007749876,0.00025675553,0.00009526352,8.8151177e-7,0.00030668286],"genre_scores_gemma":[0.9987447,0.000072336356,0.00011620905,0.000027458947,0.0002613491,0.000005485286,0.000048301834,0.000013778298,0.0007103759],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987027,0.00008954804,0.00065050274,0.00016148997,0.00020841458,0.00018736867],"domain_scores_gemma":[0.99695396,0.0000079048095,0.001044114,0.00051050796,0.0010813284,0.0004021974],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028063316,0.00014206907,0.00024648727,0.00004461902,0.00020901581,0.000008034523,0.00035425724,0.000070657385,0.00085335114],"category_scores_gemma":[0.0021619345,0.00008894145,0.00009744648,0.000074296244,0.00017814606,0.000025921236,0.000022445318,0.00010240376,5.214003e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017365995,0.00013428484,0.84266853,0.00006995932,0.00038179153,0.000007124739,0.0007051398,0.000004636418,0.1476408,0.0000890077,0.007648496,0.00047658186],"study_design_scores_gemma":[0.0015656456,0.0010234922,0.94672185,0.00039308268,0.00038169956,0.000008223234,0.0004033097,0.0000030227905,0.03207393,0.00017565857,0.01699662,0.00025344364],"about_ca_topic_score_codex":0.011191113,"about_ca_topic_score_gemma":0.04020671,"teacher_disagreement_score":0.11556686,"about_ca_system_score_codex":0.000021712576,"about_ca_system_score_gemma":0.00045412625,"threshold_uncertainty_score":0.99539346},"labels":[],"label_agreement":null},{"id":"W2617906305","doi":"10.1007/s00134-017-4793-1","title":"Real -time PCR for early microbiological diagnosis: is it time?","year":2017,"lang":"en","type":"letter","venue":"Intensive Care Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Inland Hospital","funders":"","keywords":"Medicine; Pain medicine; Anesthesiology; Real-time polymerase chain reaction; Intensive care medicine; Emergency medicine; Medical emergency; Anesthesia; Genetics; Biology; Gene","score_opus":0.03698354693348625,"score_gpt":0.30728503001159796,"score_spread":0.2703014830781117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2617906305","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14027162,0.0009129422,0.000031331812,0.8518102,0.0021298288,0.0013229449,0.0012296443,0.00006305406,0.0022284384],"genre_scores_gemma":[0.021326572,0.00034518985,0.00026225488,0.8931724,0.017982282,0.00034208604,0.019822745,0.00012271313,0.046623755],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99799716,0.00009800191,0.00046189222,0.00090596656,0.00014186178,0.00039512504],"domain_scores_gemma":[0.99419874,0.00014495548,0.0003753533,0.0010005954,0.004193565,0.00008681719],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019021826,0.0003978414,0.0006390763,0.0000658969,0.00017697271,0.00005968735,0.000584178,0.0011752394,0.0006285905],"category_scores_gemma":[0.0051091216,0.0003182692,0.00026872414,0.000029416376,0.00046614002,0.000003662715,0.00017316379,0.0004648644,0.000249388],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003844706,0.000004040669,0.00019646989,0.00007186117,0.00007487338,0.000028467302,0.0002891284,1.2787082e-8,0.28825042,1.77816e-7,0.71067303,0.0003730486],"study_design_scores_gemma":[0.0006899479,0.0008519756,0.0006462981,0.00041265256,0.00017640824,0.000037021346,0.00037216285,0.0000021419355,0.01748074,0.000016974682,0.9789096,0.00040404877],"about_ca_topic_score_codex":0.00018183824,"about_ca_topic_score_gemma":0.000008675624,"teacher_disagreement_score":0.2707697,"about_ca_system_score_codex":0.00005028566,"about_ca_system_score_gemma":0.00009453191,"threshold_uncertainty_score":0.9999269},"labels":[],"label_agreement":null},{"id":"W2619187656","doi":"10.1002/jrsm.1243","title":"Evaluating the accuracy and economic value of a new test in the absence of a perfect reference test","year":2017,"lang":"en","type":"article","venue":"Research Synthesis Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; McGill University Health Centre; University of Toronto","funders":"","keywords":"Test (biology); Medicine; Confidence interval; Diagnostic test; Diagnostic accuracy; Computer science; Statistics; Internal medicine; Mathematics; Pediatrics","score_opus":0.34409201938422895,"score_gpt":0.5575045538813157,"score_spread":0.21341253449708675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2619187656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99781936,0.0001494502,0.00015175044,0.00065157126,0.000020975333,0.00025554857,0.000010179197,0.0000016495889,0.00093954057],"genre_scores_gemma":[0.9843975,0.00015555369,0.015217239,0.000009026195,0.00006124982,0.000029222841,0.0000012493977,0.000006517157,0.00012245469],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973073,0.0018082567,0.00027557128,0.00026720113,0.0001643951,0.0001772663],"domain_scores_gemma":[0.98716486,0.011355115,0.00021649768,0.0010973206,0.00012675127,0.000039459064],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.016625443,0.000072441944,0.00015205139,0.000040377847,0.00025038046,0.00010723286,0.00078132714,0.00006600105,0.000025163197],"category_scores_gemma":[0.12683171,0.000045644774,0.00004006538,0.000054147054,0.000374222,0.000010012694,0.00026692852,0.00015737758,0.0000019286483],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001963153,0.000030009174,0.018494494,0.00003276566,0.000006089046,1.5143821e-7,0.00021650305,0.000004300945,0.9005696,0.00011971917,0.000034877306,0.08047186],"study_design_scores_gemma":[0.00014956204,0.00024852355,0.4613861,0.0000889465,0.000009401933,0.000006679766,0.0004655987,0.0027559067,0.53360575,0.0008105335,0.00039116267,0.00008183535],"about_ca_topic_score_codex":0.0012524643,"about_ca_topic_score_gemma":0.00016084651,"teacher_disagreement_score":0.44289163,"about_ca_system_score_codex":0.000013086578,"about_ca_system_score_gemma":0.0002607122,"threshold_uncertainty_score":0.8805233},"labels":[],"label_agreement":null},{"id":"W2619881204","doi":"10.1093/cid/cix101","title":"The Effect of Antibiotic Exposure and Specimen Volume on the Detection of Bacterial Pathogens in Children With Pneumonia","year":2017,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Wellcome Trust","keywords":"Antibiotics; Medicine; Sputum; Pneumonia; Streptococcus pneumoniae; Microbiological culture; Blood culture; Pathogen; Microbiology; Sputum culture; Internal medicine; Bacteria; Gastroenterology; Immunology; Pathology; Biology; Tuberculosis","score_opus":0.01101982359753467,"score_gpt":0.2795456055900387,"score_spread":0.26852578199250404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2619881204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993627,0.00006433757,0.0000053120207,0.000048502352,0.00015435528,0.00028608556,0.000024907615,0.000005364062,0.00004844825],"genre_scores_gemma":[0.99970496,0.000081841325,9.600702e-7,0.00001006326,0.00015455359,0.000006344335,0.000012743911,0.00000778524,0.000020733556],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99909693,0.0002839174,0.00026497283,0.0002048669,0.000060101298,0.00008921731],"domain_scores_gemma":[0.99896103,0.00018837162,0.00026219815,0.00050465006,0.000044150926,0.000039571667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004631668,0.00008591174,0.00015888576,0.000011957473,0.00019832647,0.000058476995,0.00013984198,0.0000716209,0.0000046790774],"category_scores_gemma":[0.0019220178,0.00004758098,0.000073276045,0.000024913103,0.00039921407,0.000004732441,0.000068167436,0.00007320019,0.0000013057463],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001572016,0.00006411279,0.84775597,0.000008201956,0.000038044393,1.7345228e-7,0.000003467731,0.0000012813555,0.14480506,0.0000051397037,0.000006563278,0.007154785],"study_design_scores_gemma":[0.000609066,0.0016352789,0.97531325,0.000020548938,0.000040563344,0.0000017151922,0.000005216091,0.000009935459,0.022254802,0.000014122964,0.000041078572,0.000054418044],"about_ca_topic_score_codex":0.000031632604,"about_ca_topic_score_gemma":0.00019500927,"teacher_disagreement_score":0.12755728,"about_ca_system_score_codex":0.0000042744605,"about_ca_system_score_gemma":0.000020836009,"threshold_uncertainty_score":0.23009737},"labels":[],"label_agreement":null},{"id":"W2623101279","doi":"10.1002/ppul.21583","title":"Prevotella Species: Molecular Characterization of Antibiotic Resistance Determinants in an emerging CF Pathogen","year":2011,"lang":"en","type":"article","venue":"Research Portal (Queen's University Belfast)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Medicine; Microbiology; Pathogen; Antibiotic resistance; Antibiotics; Prevotella; Bacteria; Immunology; Biology; Genetics","score_opus":0.03569401834661461,"score_gpt":0.2861680155324505,"score_spread":0.2504739971858359,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2623101279","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99768806,0.00000654875,0.00023762549,0.000035811623,0.000040802708,0.00026561605,0.000053221505,0.000012349764,0.0016599646],"genre_scores_gemma":[0.9963608,0.00007840276,0.0003216077,0.000006375904,0.000029476987,5.727527e-7,0.00016731031,0.000015740514,0.0030197464],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983795,0.00034836115,0.0002474858,0.0004438349,0.0002535724,0.00032722857],"domain_scores_gemma":[0.9989383,0.000011046285,0.00012592803,0.00047701935,0.00032504005,0.00012266936],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000592124,0.000117175434,0.00016379247,0.0002270581,0.00011262476,0.00002039167,0.00035443486,0.0001347435,0.000107812695],"category_scores_gemma":[0.00015803942,0.00014238997,0.000060017057,0.00038102057,0.00021147219,0.00003677413,0.00018245813,0.00014434874,0.000005436245],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016332995,0.00016216529,0.0675369,0.00006503551,0.000009969383,0.0000994856,0.00029653872,6.7383735e-7,0.9308559,0.0004785658,0.000014990864,0.00031645622],"study_design_scores_gemma":[0.00041018793,0.00024946601,0.46643078,0.00009337732,0.000009463133,0.000002048983,0.0010056664,0.000023928349,0.5300735,0.00003385341,0.0014540784,0.00021360963],"about_ca_topic_score_codex":0.00014999959,"about_ca_topic_score_gemma":0.0001725983,"teacher_disagreement_score":0.40078235,"about_ca_system_score_codex":0.00003237168,"about_ca_system_score_gemma":0.00012699589,"threshold_uncertainty_score":0.58064944},"labels":[],"label_agreement":null},{"id":"W2736599099","doi":"10.1111/vde.12474","title":"<i>Macrococcus canis</i> and <i>M. caseolyticus</i> in dogs: occurrence, genetic diversity and antibiotic resistance","year":2017,"lang":"en","type":"article","venue":"Veterinary Dermatology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Canis; Antibiotics; Microbiology; Broth microdilution; Antibiotic resistance; Biology; Multilocus sequence typing; 16S ribosomal RNA; Veterinary medicine; Minimum inhibitory concentration; Bacteria; Medicine; Genetics; Genotype; Gene; Ecology","score_opus":0.025261078901584175,"score_gpt":0.2703515317017598,"score_spread":0.2450904528001756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2736599099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984615,0.0004992903,0.000021350368,0.00040475535,0.00016084152,0.00014119367,0.000036407047,0.000011025577,0.00026364287],"genre_scores_gemma":[0.9991013,0.00025220445,0.00033362096,0.00016622977,0.000024967696,0.000003801073,0.000019184296,0.000006505628,0.00009223158],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990278,0.0000852748,0.00019215785,0.00042391513,0.000047519803,0.00022331615],"domain_scores_gemma":[0.99928933,0.00001987893,0.00011546,0.00045863667,0.000034035053,0.000082652754],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009347535,0.00013386777,0.00018135423,0.00004176761,0.0007984285,0.000068932335,0.0002182667,0.00012726909,0.0000039618926],"category_scores_gemma":[0.00013004217,0.00014654543,0.000022608561,0.000027077002,0.00033089684,0.000014132061,0.0009913038,0.000079641075,0.0000030647043],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115517214,0.000046312252,0.73763484,0.00014775795,0.000012968196,0.00035361073,0.00023464387,3.287896e-7,0.2594967,0.000043086526,0.0005525772,0.0013616384],"study_design_scores_gemma":[0.001082656,0.00019206981,0.9828622,0.000049700568,0.000019169547,0.0017932402,0.00007342105,0.00004546771,0.0058760173,0.0001466201,0.0075149224,0.0003445569],"about_ca_topic_score_codex":0.00019188331,"about_ca_topic_score_gemma":0.0009077171,"teacher_disagreement_score":0.25362068,"about_ca_system_score_codex":0.000010084317,"about_ca_system_score_gemma":0.000024668907,"threshold_uncertainty_score":0.6140947},"labels":[],"label_agreement":null},{"id":"W2744255932","doi":"10.1007/s00216-017-0521-5","title":"A new data processing routine facilitating the identification of surface adhered proteins from bacterial conditioning films via QCM-D/MALDI-ToF/MS","year":2017,"lang":"en","type":"article","venue":"Analytical and Bioanalytical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Karlsruhe Institute of Technology","keywords":"Quartz crystal microbalance; Identification (biology); Chemistry; Nanotechnology; Analytical Chemistry (journal); Chromatography; Materials science; Organic chemistry; Biology; Adsorption","score_opus":0.03446453137185846,"score_gpt":0.2985729571213647,"score_spread":0.26410842574950627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2744255932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99127644,0.00012634473,0.0065655923,0.0009867656,0.00006114364,0.0001787888,0.0003140266,0.000019308285,0.00047157495],"genre_scores_gemma":[0.99450076,0.000012913371,0.002621982,0.000033302425,0.00036818424,0.0000033983024,0.0012531767,0.0000149131565,0.0011913703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980194,0.000054477372,0.0007037077,0.0007259656,0.00023863706,0.000257808],"domain_scores_gemma":[0.9977705,0.00008335373,0.00043952692,0.0013360851,0.00018498227,0.00018554337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005840068,0.00020996275,0.00028702844,0.000010167859,0.0004397683,0.0004196902,0.0007955677,0.00020536341,0.0003377931],"category_scores_gemma":[0.0021698189,0.00016422271,0.000091674505,0.00007487871,0.00049392355,0.000043410582,0.00053082936,0.00018370363,0.000007591274],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008484301,0.00005553544,0.003599196,0.00007187945,0.00008737347,0.00000123448,0.00003390448,0.0000034760421,0.99182945,0.000025085561,0.00028015015,0.003927878],"study_design_scores_gemma":[0.0015918252,0.00009808565,0.048982315,0.00017386598,0.0004964217,0.00001952418,0.0005010366,0.10578044,0.83939874,0.00076328556,0.0014898366,0.00070462085],"about_ca_topic_score_codex":0.0005429871,"about_ca_topic_score_gemma":0.000059161088,"teacher_disagreement_score":0.1524307,"about_ca_system_score_codex":0.000010865844,"about_ca_system_score_gemma":0.00013253707,"threshold_uncertainty_score":0.6696808},"labels":[],"label_agreement":null},{"id":"W2747074371","doi":"10.2217/fmb-2017-0106","title":"Susceptibility Testing and Reporting of New Antibiotics with a Focus on Tedizolid: An International Working Group Report","year":2017,"lang":"en","type":"article","venue":"Future Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal University Hospital","funders":"","keywords":"Antibiotics; Antimicrobial stewardship; Medicine; Antibiotic resistance; Antimicrobial; Family medicine; Intensive care medicine; Biology; Microbiology","score_opus":0.04405588025181094,"score_gpt":0.3050383380717452,"score_spread":0.26098245781993423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2747074371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978467,0.000025154539,0.00024390749,0.00035157445,0.00062719197,0.00015248578,0.000012433115,0.000020344014,0.0007201897],"genre_scores_gemma":[0.98573375,0.000008265936,0.01273036,0.00005493267,0.0011180092,6.2352905e-7,0.00018836786,0.000016847895,0.00014884086],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99841535,0.00005636101,0.00069817033,0.00059440086,0.000048029302,0.00018771445],"domain_scores_gemma":[0.99714553,0.000024626286,0.0017113977,0.00086171326,0.00017972598,0.000077027216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007224408,0.00015773832,0.0002524711,0.00003897248,0.00021082633,0.00008157774,0.00028813863,0.00020137579,0.000010547201],"category_scores_gemma":[0.0023776083,0.00013265597,0.00004290027,0.000035965557,0.00018914952,0.000012446262,0.00016345827,0.00013601902,7.6209943e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007722514,0.00003968423,0.3514797,0.000008258364,0.000022632616,0.000015129813,0.000037460053,0.0000012502062,0.64172405,0.000044494816,0.00005763093,0.006492479],"study_design_scores_gemma":[0.0007562851,0.00075345905,0.8053576,0.00009847369,0.000029769759,0.0012085332,0.0001687437,0.000021935055,0.18567316,0.00013447224,0.0054834415,0.0003141547],"about_ca_topic_score_codex":0.00020549237,"about_ca_topic_score_gemma":0.0010263376,"teacher_disagreement_score":0.4560509,"about_ca_system_score_codex":0.000013589751,"about_ca_system_score_gemma":0.00007806608,"threshold_uncertainty_score":0.54095536},"labels":[],"label_agreement":null},{"id":"W2747164541","doi":"10.1093/ofid/ofx163.1568","title":"Retrospective Evaluation of Accelerate Pheno™ System (AXDX, Version 1.1) for Identification/Antimicrobial Susceptibility Testing (ID/AST) of Gram-Negative Bacilli (GNB) including Carbapenemase-Producing Organisms (CPO) from Seeded Blood Culture Bottles (SBCB) Tested using AXDX PhenoTestTM BC Kits","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System; University Health Network; University of Manitoba; Mount Sinai Hospital","funders":"","keywords":"Proteus mirabilis; Microbiology; Enterobacter cloacae; Amikacin; Ertapenem; Meropenem; Medicine; Bacteremia; Broth microdilution; Piperacillin; Klebsiella pneumoniae; Ceftazidime; Tazobactam; Ceftriaxone; Antimicrobial; Biology; Imipenem; Pseudomonas aeruginosa; Escherichia coli; Antibiotics; Minimum inhibitory concentration; Bacteria; Antibiotic resistance","score_opus":0.0625110148276119,"score_gpt":0.3286497484635413,"score_spread":0.2661387336359294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2747164541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99468637,0.000053299897,0.0006251463,0.000035255856,0.00055203977,0.0022929956,0.0013074847,0.000057505426,0.0003899341],"genre_scores_gemma":[0.99671423,0.0000059233053,0.0016957083,0.000021917647,0.00021759266,0.000080371596,0.0011723017,0.000058923695,0.00003305153],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99682033,0.0003264458,0.0009659422,0.0011209096,0.00039994536,0.00036643582],"domain_scores_gemma":[0.9937661,0.00013113784,0.0019330151,0.0012689988,0.0027687936,0.00013193072],"candidate_categories":["metaresearch","metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0012851214,0.00037313413,0.000596246,0.00008477516,0.001496055,0.0005818856,0.00073939224,0.00022701721,0.000042713687],"category_scores_gemma":[0.008556472,0.00038823477,0.00018578557,0.0002392844,0.00026317703,0.00015908462,0.0006829999,0.00012589197,0.0000040261802],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014519373,0.00029819555,0.26112524,0.00017931225,0.00017784015,3.5373765e-7,0.00032251043,0.000479747,0.73686254,0.000033416713,0.000071874114,0.0003037616],"study_design_scores_gemma":[0.003322462,0.0003411443,0.24768858,0.00051250437,0.0011068383,0.000005343548,0.0014748605,0.0046343827,0.73957807,0.0008102405,0.0000065930876,0.0005190077],"about_ca_topic_score_codex":0.0050292904,"about_ca_topic_score_gemma":0.00087340956,"teacher_disagreement_score":0.01343667,"about_ca_system_score_codex":0.00029043763,"about_ca_system_score_gemma":0.00048375753,"threshold_uncertainty_score":0.99985695},"labels":[],"label_agreement":null},{"id":"W2748190412","doi":"10.1093/cid/cix775","title":"Optimizing Empiric Antibiotic Selection in Sepsis: Turning Probabilities Into Practice","year":2017,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Medicine; Sepsis; Selection (genetic algorithm); Intensive care medicine; Antibiotics; Internal medicine; Microbiology; Machine learning; Computer science","score_opus":0.04100201286941735,"score_gpt":0.3754208071093416,"score_spread":0.33441879423992427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2748190412","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8837314,0.0019910268,0.00031387233,0.10528469,0.004015301,0.0017128708,0.00007823684,0.0003833599,0.0024892357],"genre_scores_gemma":[0.86952895,0.00050664233,0.00066278264,0.11639661,0.00971789,0.000101708465,0.0012591071,0.00014053663,0.0016857584],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.996347,0.00095506484,0.0009652193,0.0011130215,0.00020427599,0.00041541032],"domain_scores_gemma":[0.9974202,0.0005364428,0.00080490485,0.000736984,0.0003776024,0.00012387519],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00083720934,0.00038095788,0.0005655614,0.00014039398,0.00033915383,0.00042811464,0.00037355578,0.0011161495,0.000037736685],"category_scores_gemma":[0.018180555,0.0004009799,0.00037961887,0.00012828324,0.000320121,0.000040466584,0.00022687172,0.001241905,0.000047460024],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001329302,0.0011940467,0.3964125,0.0011976043,0.00046088002,0.00013091373,0.00020715669,0.00019820606,0.0060758353,0.000008694726,0.58753216,0.0064490824],"study_design_scores_gemma":[0.002003877,0.0013073158,0.123037234,0.0008683855,0.00074392516,0.00006481279,0.00020156639,0.00032329027,0.00057682855,0.00084151165,0.8681593,0.0018719779],"about_ca_topic_score_codex":0.00017786893,"about_ca_topic_score_gemma":0.0002501134,"teacher_disagreement_score":0.2806271,"about_ca_system_score_codex":0.00011421817,"about_ca_system_score_gemma":0.0004577359,"threshold_uncertainty_score":0.9998442},"labels":[],"label_agreement":null},{"id":"W2749035995","doi":"10.1093/ofid/ofx163.1542","title":"Lysis Centrifugation Method for the Direct Identification of Positive Blood Cultures Using MALDI-TOF MS","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Scotia Health Authority; Dalhousie University","funders":"","keywords":"Bacilli; Blood culture; Microbiology; Agar plate; Gram-Positive Cocci; Lysis; Matrix-assisted laser desorption/ionization; Centrifugation; Gram-positive bacteria; Bacteria; Medicine; Biology; Chromatography; Chemistry; Immunology; Antibiotics","score_opus":0.018267561049792363,"score_gpt":0.3476940164412431,"score_spread":0.3294264553914507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2749035995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96910304,0.0003674925,0.02556529,0.00047997045,0.0005041253,0.0017789109,0.0006464166,0.000023900518,0.0015308582],"genre_scores_gemma":[0.9983685,0.000043560587,0.00069834467,0.000072063674,0.000100760546,0.00008652783,0.0002747279,0.000014793299,0.0003407161],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990963,0.00009957062,0.00027051324,0.00030686182,0.00008352472,0.00014326574],"domain_scores_gemma":[0.99847287,0.00006406308,0.00048412805,0.0006304227,0.0003026656,0.000045867924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033925427,0.00010936311,0.00014784516,0.000023752315,0.00091730215,0.00047357837,0.00043786445,0.000066528,0.000019316662],"category_scores_gemma":[0.0011888177,0.000087811844,0.00014680515,0.000046398694,0.00008640037,0.000037201975,0.00020635872,0.000028603767,0.0000014246039],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010138044,0.0002448274,0.077462755,0.00003335081,0.0002616563,1.8759376e-7,0.000057893067,0.00020962213,0.91620713,0.0006393219,0.00042382622,0.004358018],"study_design_scores_gemma":[0.0012575748,0.00016176557,0.28247482,0.00004346045,0.00083856203,0.0000080390855,0.0002432829,0.0026311975,0.7092878,0.001134016,0.001622987,0.00029646183],"about_ca_topic_score_codex":0.0007681428,"about_ca_topic_score_gemma":0.0002621972,"teacher_disagreement_score":0.20691931,"about_ca_system_score_codex":0.000015268839,"about_ca_system_score_gemma":0.00005990474,"threshold_uncertainty_score":0.70552397},"labels":[],"label_agreement":null},{"id":"W2749628600","doi":"","title":"Centralization of Clinical Microbiology Services: The Calgary Experience","year":2017,"lang":"en","type":"article","venue":"IDWeek 2017","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Geography; Medicine","score_opus":0.06007698588613191,"score_gpt":0.37161083659487776,"score_spread":0.31153385070874584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2749628600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978012,0.000062707026,0.000230059,0.00017098706,0.0005936291,0.000097485135,0.000011577497,0.0000052884607,0.0010271115],"genre_scores_gemma":[0.9987597,0.0000698505,0.00019501337,0.00015378969,0.00018793857,0.000004760174,0.00008248943,0.0000051722486,0.0005412761],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99929315,0.00008182197,0.000278954,0.00021063338,0.00002853784,0.0001068796],"domain_scores_gemma":[0.9986914,0.000015035518,0.00030929773,0.0008550069,0.00009639991,0.000032892644],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031809704,0.00006135091,0.000104892926,0.00000600147,0.0002390412,0.000049277856,0.00051338546,0.00010618805,0.000025778632],"category_scores_gemma":[0.0003390335,0.000045362034,0.00006479228,0.000009567836,0.00025746718,0.000006035945,0.00014364731,0.0000462223,0.000013191376],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031129544,0.00004491517,0.12577996,0.000016822032,0.000014432819,4.2441485e-7,0.00023242518,8.5118353e-7,0.8703518,0.00010181786,0.00070626853,0.0027191925],"study_design_scores_gemma":[0.0005068957,0.00009253426,0.82707083,0.000025917974,0.00001623397,0.00001246643,0.00022155592,0.00015336314,0.09734921,0.00007104985,0.07432554,0.00015437668],"about_ca_topic_score_codex":0.00018445776,"about_ca_topic_score_gemma":0.00022204456,"teacher_disagreement_score":0.77300256,"about_ca_system_score_codex":0.000002007586,"about_ca_system_score_gemma":0.000031079624,"threshold_uncertainty_score":0.18498102},"labels":[],"label_agreement":null},{"id":"W2751501579","doi":"10.1093/ofid/ofx163.276","title":"Trends in Outpatient Bacteremia in British Columbia, Canada between 2010 and 2015","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Bacteremia; Ciprofloxacin; Blood culture; Streptococcus pneumoniae; Enterococcus faecalis; Enterococcus faecium; Klebsiella pneumoniae; Meropenem; Microbiology; Population; Enterococcus; Epidemiology; Coagulase; Salmonella; Staphylococcus aureus; Antibiotics; Internal medicine; Staphylococcus; Antibiotic resistance; Biology; Environmental health; Bacteria; Escherichia coli","score_opus":0.013291855269610893,"score_gpt":0.2703585019448823,"score_spread":0.2570666466752714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2751501579","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997714,0.00006677099,0.0000011964711,0.00021064645,0.0002090885,0.0001843204,0.00018806946,0.000004775646,0.0014211194],"genre_scores_gemma":[0.9975487,0.000018047798,0.0000096950125,0.00010680772,0.00004212268,0.00003139492,0.00033530197,0.000011146449,0.0018967944],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99916667,0.000048780374,0.00020425653,0.00031848668,0.00006230194,0.00019953166],"domain_scores_gemma":[0.9993576,0.00001043304,0.000109103734,0.00037208374,0.000039244707,0.00011156474],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000105809544,0.00007360142,0.00015452673,0.000024271147,0.00022047301,0.0009065292,0.00026384622,0.00007239612,0.00010090049],"category_scores_gemma":[0.00026142586,0.000118205775,0.000024569841,0.00003962693,0.00005547417,0.000025366238,0.0003512788,0.000067049696,0.0000012464067],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000484355,0.000057114423,0.967037,0.0000062260788,0.000007059047,0.0000045741763,0.000005997728,5.758001e-7,0.00048576845,9.544157e-7,0.008666672,0.023723166],"study_design_scores_gemma":[0.0006613246,0.000055620625,0.993981,0.00002675246,0.000006931579,0.0000031202287,0.000038552585,0.0000029999533,0.000056305773,0.00005707084,0.0049743867,0.0001359306],"about_ca_topic_score_codex":0.939796,"about_ca_topic_score_gemma":0.99877924,"teacher_disagreement_score":0.05898328,"about_ca_system_score_codex":0.00005905884,"about_ca_system_score_gemma":0.00017372199,"threshold_uncertainty_score":0.87416816},"labels":[],"label_agreement":null},{"id":"W2752111628","doi":"10.1093/ofid/ofx163.1562","title":"Clinical Impact of Rapid Identification (ID) and Phenotypic Antimicrobial Susceptibility Testing (AST) by Accelerate Pheno™ System (AXDX) for Gram-negative (GNB) Bloodstream Infections","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System; University Health Network; University of Toronto","funders":"","keywords":"ABX test; Medicine; Gram staining; Antibiotics; Blood culture; Antimicrobial; Microbiology; Bacilli; Gram; Bacteria; Biology","score_opus":0.03346959817895554,"score_gpt":0.35121906825165605,"score_spread":0.3177494700727005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2752111628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99551946,0.000054241456,0.00072820106,0.000046128134,0.0004003201,0.0014382257,0.0011194842,0.00005434639,0.00063957064],"genre_scores_gemma":[0.99870175,0.000028171818,0.00021628336,0.000032324468,0.0001687814,0.00012469642,0.0006003266,0.000035644305,0.000092008486],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978768,0.00022261424,0.0007530589,0.00074100925,0.0000895285,0.00031696493],"domain_scores_gemma":[0.99721503,0.00018217691,0.00092856603,0.0009392701,0.0005446313,0.00019035069],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006618824,0.00026130606,0.00042025364,0.00004684046,0.0011164806,0.0007921656,0.00046881466,0.00017440517,0.000026951522],"category_scores_gemma":[0.0032388465,0.00025400947,0.00024300242,0.000089027344,0.0003763384,0.000098486555,0.0004220231,0.000103203274,0.0000051184197],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013801099,0.00067983085,0.734419,0.00012377188,0.00018158366,2.0452698e-7,0.000019302037,0.000013800825,0.25525635,0.000066794986,0.0023509902,0.0067503564],"study_design_scores_gemma":[0.0036840378,0.0016733167,0.95745,0.0001327849,0.00034230697,0.000016132075,0.00026199702,0.0005748353,0.03459409,0.0004783436,0.00020876875,0.00058339676],"about_ca_topic_score_codex":0.0015734601,"about_ca_topic_score_gemma":0.00059755583,"teacher_disagreement_score":0.223031,"about_ca_system_score_codex":0.00006289854,"about_ca_system_score_gemma":0.00023438605,"threshold_uncertainty_score":0.99999124},"labels":[],"label_agreement":null},{"id":"W2753868484","doi":"10.1016/j.cca.2017.08.035","title":"Traditional approaches versus mass spectrometry in bacterial identification and typing","year":2017,"lang":"en","type":"review","venue":"Clinica Chimica Acta","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Mass spectrometry; Chromatography; Serotype; Identification (biology); Computational biology; Matrix-assisted laser desorption/ionization; Chemistry; Biology; Microbiology; Desorption","score_opus":0.3168456903499916,"score_gpt":0.38632609200994394,"score_spread":0.06948040165995234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2753868484","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.043787017,0.9424054,0.000048291575,0.00047036566,0.0064647733,0.0022242446,0.00068354636,0.00008481238,0.003831569],"genre_scores_gemma":[0.020568209,0.97333694,0.00070049794,0.000010091899,0.0014666715,0.000072188624,0.0034589565,0.00005283183,0.00033360213],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976226,0.00024976017,0.00093018706,0.0008681412,0.00009456393,0.00023475295],"domain_scores_gemma":[0.99805915,0.00018405112,0.0007184007,0.0009076359,0.00003422909,0.0000965025],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00083005906,0.00030449204,0.0007709567,0.00013663912,0.0001452662,0.0002599133,0.0005161932,0.0005603838,0.00006572308],"category_scores_gemma":[0.0016885134,0.00030962477,0.00027509689,0.00008391086,0.00018133405,0.000015570964,0.0001463846,0.0003441067,0.000019279207],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007117979,0.0008658818,0.00025862863,0.009686388,0.00085892226,0.0000060604316,0.00008986736,1.4252913e-7,0.106997706,0.000688246,0.002917324,0.87691903],"study_design_scores_gemma":[0.0009899669,0.00012344467,0.003076526,0.0011768166,0.00027215955,0.00001833913,0.000017012948,0.000012859278,0.00013233216,0.00012408775,0.9934368,0.00061966985],"about_ca_topic_score_codex":0.000002663784,"about_ca_topic_score_gemma":0.00002474129,"teacher_disagreement_score":0.99051946,"about_ca_system_score_codex":0.000046405705,"about_ca_system_score_gemma":0.00023737444,"threshold_uncertainty_score":0.99993557},"labels":[],"label_agreement":null},{"id":"W2754634911","doi":"10.1093/ofid/ofx163.1561","title":"Prospective Evaluation of Accelerate Pheno™ System (AXDX) Version 1.1 for Reducing Turn-Around-Time (TAT) in Identification/Antimicrobial Susceptibility Testing (ID/AST) of Gram-Negative Bacilli (GNB) from Positive Blood Cultures (+BC) using AXDX PhenoTest™ BC Kits","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System; University Health Network; Mount Sinai Hospital","funders":"","keywords":"Antimicrobial; Medicine; Gram; Bacilli; Identification (biology); Microbiology; Blood culture; Antibiotics; Biology; Bacteria; Genetics","score_opus":0.03418185571708336,"score_gpt":0.3215625427938321,"score_spread":0.28738068707674874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2754634911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99471116,0.000055653836,0.00027885824,0.000032395976,0.0003032114,0.0027295596,0.0012511263,0.000027524433,0.000610534],"genre_scores_gemma":[0.99760544,0.000004304039,0.0011291474,0.000012962284,0.00013889004,0.00012074957,0.0009240343,0.00003689042,0.000027568376],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99722993,0.000409381,0.00083348097,0.0009062643,0.00029782482,0.00032312455],"domain_scores_gemma":[0.99565506,0.00018316775,0.0013960907,0.0008289317,0.0018369681,0.00009979374],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010440324,0.00030444757,0.00050133764,0.00009122423,0.0007790754,0.00048750863,0.0005648367,0.00017821255,0.00003156765],"category_scores_gemma":[0.004164101,0.00031785687,0.00016630883,0.00018342858,0.00025768462,0.00016591419,0.0004127697,0.000108038614,0.0000045765423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032734266,0.00055962044,0.16867322,0.0001328512,0.00016924425,5.087097e-7,0.00033115302,0.0013131604,0.82768464,0.00004865956,0.000044566783,0.00071501074],"study_design_scores_gemma":[0.004078533,0.00034296027,0.3085721,0.0006352529,0.0007150268,0.0000052433766,0.0011622405,0.010865786,0.6721269,0.0010292988,0.0000025739785,0.00046404483],"about_ca_topic_score_codex":0.009376309,"about_ca_topic_score_gemma":0.000984296,"teacher_disagreement_score":0.15555775,"about_ca_system_score_codex":0.00026946166,"about_ca_system_score_gemma":0.0004246569,"threshold_uncertainty_score":0.99992734},"labels":[],"label_agreement":null},{"id":"W2755989813","doi":"10.1093/ofid/ofx163.1423","title":"Utility of Prior Cultures in Predicting Antibiotic Resistance of Bloodstream Infections Due to Gram-negative Pathogens","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Medicine; Antibiotics; Bacteremia; Antibiotic resistance; Gram; Internal medicine; Bloodstream infection; Empiric therapy; Drug resistance; Predictive value; Blood culture; Microbiology; Bacteria; Biology","score_opus":0.013966046873318348,"score_gpt":0.3043878548955317,"score_spread":0.29042180802221335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2755989813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943284,0.000042143674,0.00006140018,0.000091916576,0.00013477464,0.00060679356,0.00029602184,0.000012745378,0.00442583],"genre_scores_gemma":[0.9994667,0.000014154386,0.00018013599,0.00002962627,0.000029328676,0.000022150096,0.00005154685,0.000011759313,0.00019458744],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989267,0.00009763226,0.00035336392,0.0003546798,0.0000871603,0.00018045641],"domain_scores_gemma":[0.99861723,0.000036532994,0.00034684106,0.00069086754,0.0002171701,0.00009133805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018763586,0.00012632755,0.0002494084,0.00005051669,0.00030748837,0.000116832336,0.00036808726,0.0000794139,0.00002504471],"category_scores_gemma":[0.0030321255,0.00012612491,0.00009255136,0.000104561426,0.0001529306,0.00002847717,0.0003852078,0.000056986464,0.0000019339507],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006256174,0.00051130226,0.8928352,0.00006398718,0.00003389595,0.0000012943851,0.00008641576,0.000009199948,0.10512071,0.00011657333,0.00021168694,0.00094718597],"study_design_scores_gemma":[0.0005266249,0.00015326032,0.9116202,0.00011100943,0.00003216502,0.0000024479286,0.0002220783,0.000013459962,0.08663853,0.00039482105,0.00016193882,0.00012347221],"about_ca_topic_score_codex":0.0013769276,"about_ca_topic_score_gemma":0.017399985,"teacher_disagreement_score":0.018785007,"about_ca_system_score_codex":0.000012036505,"about_ca_system_score_gemma":0.000108515065,"threshold_uncertainty_score":0.9709601},"labels":[],"label_agreement":null},{"id":"W2756058590","doi":"10.1186/s41205-017-0018-z","title":"Development of a 3D printed device to support long term intestinal culture as an alternative to hyperoxic chamber methods","year":2017,"lang":"en","type":"article","venue":"3D Printing in Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Alberta Livestock and Meat Agency; Genome Canada","keywords":"Explant culture; Tissue culture; Organ culture; In vitro; Biology; Microbiology; Pathology; Biomedical engineering; Andrology; Medicine","score_opus":0.06810151465528701,"score_gpt":0.4182813172873275,"score_spread":0.35017980263204046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2756058590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9868175,0.000007648326,0.010832653,0.00026404113,0.00022359825,0.00032426405,8.652311e-7,0.000013871981,0.0015155714],"genre_scores_gemma":[0.7672667,0.0000019435913,0.23173705,0.00027595338,0.00017057997,0.000023455983,0.00003254368,0.000013394185,0.00047838246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985707,0.00010971811,0.0004892931,0.00046184027,0.00015114166,0.0002173528],"domain_scores_gemma":[0.9987127,0.000021609585,0.00024222262,0.00059941696,0.000265842,0.00015817203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015858631,0.00015614282,0.00024891688,0.00008187731,0.00012298755,0.000033053853,0.00038957107,0.0000796687,0.00008767449],"category_scores_gemma":[0.004189433,0.0001354461,0.000021611526,0.00008369896,0.00007616258,0.000010084289,0.00037968587,0.00012980851,0.000014825147],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047131827,0.00005622257,0.04650789,0.000046475107,0.000016578573,0.0000053609556,0.0034778656,0.0000030105853,0.85988396,0.000013203543,0.000015387932,0.08992691],"study_design_scores_gemma":[0.00055018044,0.0003578717,0.49431792,0.00041520936,0.000013610253,0.000032139164,0.00038789702,0.00006877456,0.49945784,0.000010034498,0.004176131,0.00021239014],"about_ca_topic_score_codex":0.00013140836,"about_ca_topic_score_gemma":0.00051314506,"teacher_disagreement_score":0.44781002,"about_ca_system_score_codex":0.00003263075,"about_ca_system_score_gemma":0.00009596902,"threshold_uncertainty_score":0.5523331},"labels":[],"label_agreement":null},{"id":"W2757348891","doi":"10.1093/ofid/ofx163.1665","title":"Direct Disk Diffusion Susceptibility Testing for Gram-negative Bacteria from Blood Cultures: Diagnostic Accuracy and Impact on Antimicrobial Stewardship","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Providence Health Care","funders":"","keywords":"Cefoxitin; Microbiology; Ceftazidime; Meropenem; Blood culture; Medicine; Clavulanic acid; Enterobacter; Antibiotics; Amikacin; Ciprofloxacin; Antimicrobial stewardship; Ceftriaxone; Antimicrobial; Pseudomonas aeruginosa; Amoxicillin; Biology; Bacteria; Antibiotic resistance; Escherichia coli; Staphylococcus aureus","score_opus":0.0203734858426998,"score_gpt":0.31857767801120646,"score_spread":0.29820419216850663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2757348891","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955054,0.00003950522,0.000033885146,0.00012319446,0.0003221337,0.0013389784,0.0018767432,0.0000461307,0.0007140074],"genre_scores_gemma":[0.99813485,0.000046258196,0.0002553921,0.00015398099,0.0002615057,0.00013459183,0.00088891113,0.00003711332,0.00008736767],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983003,0.00015131646,0.00030468003,0.00080167,0.00009312591,0.00034889806],"domain_scores_gemma":[0.99732876,0.00096880086,0.000384057,0.0008973354,0.00020545282,0.0002155765],"candidate_categories":["metaresearch","metaepi_narrow","scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.00020291304,0.0003156624,0.0003315825,0.000028387254,0.0012873492,0.001450855,0.0005016931,0.00013847303,0.00005271586],"category_scores_gemma":[0.022603024,0.00026083298,0.00016932687,0.000043707547,0.00019262021,0.00007080365,0.000607855,0.00008503451,0.000006364959],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002953475,0.00051781244,0.61783266,0.000034994086,0.00009746862,0.0000015100641,0.0000465995,0.0000045956026,0.37762564,0.000012513777,0.0008986466,0.0026322312],"study_design_scores_gemma":[0.0021036398,0.00085552305,0.9510937,0.00014707279,0.00017353134,0.000004222149,0.00007363375,0.00002782057,0.04417598,0.0007764016,0.00016750502,0.00040096973],"about_ca_topic_score_codex":0.0028741518,"about_ca_topic_score_gemma":0.0018301272,"teacher_disagreement_score":0.33344966,"about_ca_system_score_codex":0.000035798395,"about_ca_system_score_gemma":0.0001265019,"threshold_uncertainty_score":0.9999844},"labels":[],"label_agreement":null},{"id":"W2761940593","doi":"10.1093/ofid/ofx163.1560","title":"An Evaluation of Vitek2™ Direct Susceptibility Testing (DST) of 
Gram-Negative Bacteria (GNB) from Positive Blood Cultures (+BC).","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Medicine; Gram-negative bacteria; Gram; Microbiology; Blood culture; Bacteria; Antibiotics; Biology; Genetics; Escherichia coli","score_opus":0.03009727355545891,"score_gpt":0.3395047236136924,"score_spread":0.30940745005823345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2761940593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99332416,0.000055189434,0.000027056474,0.00003013606,0.0001891331,0.0007890818,0.00082582835,0.000020531874,0.004738893],"genre_scores_gemma":[0.9984072,0.0000078004305,0.0005451739,0.000030413414,0.00009630975,0.000056273122,0.0007979152,0.000020601678,0.00003835232],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99814934,0.00042332814,0.00042057282,0.00057265157,0.0002361948,0.00019793179],"domain_scores_gemma":[0.996907,0.00009269404,0.0007125553,0.0010802574,0.0010850995,0.00012238458],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057644973,0.00019936441,0.00032072116,0.0000329621,0.00043500477,0.00030574968,0.00057847105,0.00011986643,0.00015710597],"category_scores_gemma":[0.004442346,0.00019183233,0.00012077222,0.00006975935,0.00026038993,0.00008458411,0.00034181593,0.00006072963,0.000003239515],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009308406,0.00050819333,0.4205991,0.000014285122,0.00010088272,2.858484e-7,0.00008129556,0.000019178788,0.5755574,0.00002526224,0.00004680408,0.0029542316],"study_design_scores_gemma":[0.00096628116,0.00038665292,0.68622977,0.000054962977,0.0002625651,0.0000011003353,0.0001690213,0.00014551099,0.31008044,0.0015175397,0.000010706618,0.00017547484],"about_ca_topic_score_codex":0.007019727,"about_ca_topic_score_gemma":0.0028024486,"teacher_disagreement_score":0.26563063,"about_ca_system_score_codex":0.000031435207,"about_ca_system_score_gemma":0.00021910168,"threshold_uncertainty_score":0.9995926},"labels":[],"label_agreement":null},{"id":"W2763121727","doi":"10.1093/ofid/ofx163.1658","title":"Direct Disk Diffusion Susceptibility Testing for Staphylococcus aureus from Blood Cultures: Diagnostic Accuracy and Impact on Antimicrobial Stewardship","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Providence Health Care","funders":"","keywords":"Cefoxitin; Medicine; Staphylococcus aureus; Blood culture; Microbiology; Bacteremia; Penicillin; Antimicrobial stewardship; Methicillin-resistant Staphylococcus aureus; Antibiotics; Penicillin binding proteins; Internal medicine; Antibiotic resistance; Biology; Bacteria","score_opus":0.019208894902348287,"score_gpt":0.3161355169537593,"score_spread":0.296926622051411,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2763121727","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99548805,0.00011162683,0.000044832293,0.00013032528,0.00029390297,0.0013592322,0.0017371661,0.000050492647,0.0007843654],"genre_scores_gemma":[0.9982882,0.000055488275,0.00013539426,0.00018047023,0.00029879974,0.00012890762,0.0007802887,0.000037295682,0.000095162155],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982946,0.00012390675,0.00030314265,0.00080549315,0.00010471892,0.00036813915],"domain_scores_gemma":[0.9974504,0.0007404456,0.000350843,0.001040496,0.0001908952,0.0002269116],"candidate_categories":["metaresearch","metaepi_narrow","sts","scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.00021400604,0.0003093897,0.0003166628,0.00003140075,0.0013216644,0.0013361108,0.00056126696,0.00014244167,0.000034803656],"category_scores_gemma":[0.017183213,0.0002566255,0.0001781101,0.000043455675,0.00016537291,0.0000568665,0.00063060486,0.0000883448,0.0000059044023],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020119884,0.0005027362,0.64620066,0.00003419023,0.00008038725,0.0000017540331,0.000026048698,0.000011676788,0.34865797,0.000011282607,0.0014026281,0.0028694705],"study_design_scores_gemma":[0.0021520045,0.0009124676,0.963025,0.00013319412,0.00018643087,0.0000023132811,0.000055175806,0.000040142655,0.03208327,0.000537552,0.0004354191,0.0004370676],"about_ca_topic_score_codex":0.0025205768,"about_ca_topic_score_gemma":0.0019483697,"teacher_disagreement_score":0.3168243,"about_ca_system_score_codex":0.00003376027,"about_ca_system_score_gemma":0.00014044672,"threshold_uncertainty_score":0.9999886},"labels":[],"label_agreement":null},{"id":"W2766325520","doi":"10.3168/jds.2017-13226","title":"Short communication: Evaluation of MALDI-TOF mass spectrometry and a custom reference spectra expanded database for the identification of bovine-associated coagulase-negative staphylococci","year":2017,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"Agriculture and Agri-Food Canada; Atlantic Veterinary College; Canadian Dairy Commission; Dairy Farmers of Canada; University of Missouri","keywords":"Coagulase; rpoB; Mass spectrometry; Database; Mass spectrum; Identification (biology); Biology; Chemistry; Staphylococcus; Chromatography; Genetics; Gene; Bacteria; Staphylococcus aureus; 16S ribosomal RNA; Computer science","score_opus":0.07152110970885031,"score_gpt":0.35843818599273164,"score_spread":0.2869170762838813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2766325520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960584,0.00018615856,0.0029670934,0.00020585173,0.00011745706,0.00028225742,0.00007437233,0.0000015816477,0.00010679825],"genre_scores_gemma":[0.9969502,0.0001100434,0.0028319557,0.000008159485,0.000035958252,0.000005886824,0.000019915047,0.0000042260217,0.00003361973],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99854916,0.00012906831,0.00057506916,0.00018245025,0.00045638415,0.00010788119],"domain_scores_gemma":[0.9960647,0.00012056446,0.0013056719,0.0007626367,0.0016974292,0.00004899828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0062274956,0.00007460568,0.00015381623,0.00008332352,0.00038303804,0.00011141732,0.0007675663,0.000044383,0.000008437668],"category_scores_gemma":[0.005250137,0.000058584632,0.000053037762,0.00014206591,0.0006624767,0.00007885726,0.000110162146,0.00009284694,1.6874192e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008232329,0.000056009092,0.008640272,0.000013999802,0.000025985659,7.3215055e-8,0.000115303665,0.00001651603,0.9895677,0.0001155584,0.000054177006,0.0013120645],"study_design_scores_gemma":[0.0005197232,0.00015943038,0.46818388,0.00004657126,0.0000763084,0.0000050146446,0.00049200974,0.0018004209,0.5281641,0.0004710303,0.000019088528,0.00006240661],"about_ca_topic_score_codex":0.00002505869,"about_ca_topic_score_gemma":0.000059405036,"teacher_disagreement_score":0.4614036,"about_ca_system_score_codex":0.00003965357,"about_ca_system_score_gemma":0.00030502482,"threshold_uncertainty_score":0.62852836},"labels":[],"label_agreement":null},{"id":"W2780945703","doi":"10.1016/j.cmi.2017.12.011","title":"Performance of the BacT/Alert Virtuo Microbial Detection System for the culture of sterile body fluids: prospective multicentre study","year":2017,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia; Providence Health Care","funders":"BioFire Diagnostics","keywords":"Gram staining; Blood culture; Medicine; Body fluid; Microbiology; Incubation; Microbiological culture; Bottle; Prospective cohort study; Surgery; Bacteria; Biology; Internal medicine; Antibiotics","score_opus":0.020172521500018796,"score_gpt":0.3049711505804326,"score_spread":0.2847986290804138,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2780945703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976061,0.000033625827,0.00017328661,0.000021952845,0.0012771244,0.00082221907,0.000025748432,0.000006115122,0.000033807282],"genre_scores_gemma":[0.9995427,0.000051189312,0.00002415329,0.000015755617,0.0002045009,0.000026420234,0.000012653074,0.000005573455,0.000117054464],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991218,0.00016648113,0.00036855348,0.0002419632,0.000014915037,0.00008627971],"domain_scores_gemma":[0.99894416,0.00005956518,0.0003879913,0.00039978282,0.00019278355,0.000015685038],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000564587,0.00008630472,0.00016418444,0.000009163263,0.00044332468,0.000018739067,0.0001510333,0.00019270435,0.0000023974353],"category_scores_gemma":[0.0005602495,0.00005188459,0.00010941513,0.000022001896,0.00038239764,0.000009387139,0.0001173497,0.00010730123,9.0456933e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002837597,0.0001100973,0.26023096,0.00004164095,0.000053654894,9.623995e-9,0.000098858756,0.0000012694043,0.73813236,0.0000015465356,0.000035027344,0.0010108222],"study_design_scores_gemma":[0.0009320042,0.00084609375,0.61731416,0.000027229295,0.00007047448,0.000007844903,0.00025886425,0.000107922635,0.37966487,9.714097e-7,0.00071138324,0.00005820535],"about_ca_topic_score_codex":0.000044263565,"about_ca_topic_score_gemma":0.00016574752,"teacher_disagreement_score":0.3584675,"about_ca_system_score_codex":0.000010164659,"about_ca_system_score_gemma":0.000022085314,"threshold_uncertainty_score":0.34097397},"labels":[],"label_agreement":null},{"id":"W2781783034","doi":"10.1016/j.cmi.2017.12.021","title":"Culturing rate and the surveillance of bloodstream infections: a population-based assessment","year":2018,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Inland Hospital","funders":"","keywords":"Bloodstream infection; Population; Medicine; Intensive care medicine; Biology; Environmental health","score_opus":0.01826591069469547,"score_gpt":0.33345248453126275,"score_spread":0.3151865738365673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2781783034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985606,0.00005052905,0.0006673142,0.00016664578,0.00031673905,0.00013264794,0.0000062120907,0.000009982769,0.00008933724],"genre_scores_gemma":[0.99924093,0.00012673267,0.00014796741,0.00017736205,0.0001809238,0.000007715223,0.00008408588,0.0000034594575,0.00003083366],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990074,0.000414161,0.00029634728,0.00020542632,0.00000841362,0.000068231704],"domain_scores_gemma":[0.99942076,0.00017024268,0.00014502472,0.00013706702,0.00010573958,0.000021140237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009968512,0.0000638221,0.00013021273,0.000016924263,0.0001455951,0.00001474942,0.000028180893,0.0001351372,0.000011846931],"category_scores_gemma":[0.00068916957,0.000045239078,0.0000468562,0.00004615848,0.00045989317,0.0000038328685,0.000037981386,0.000076977674,0.0000013140378],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053576077,0.000052587464,0.78016114,0.000009965997,0.00002270608,1.3521362e-8,0.000006042461,0.000001971356,0.21846302,0.00014478686,0.000039951632,0.0010442428],"study_design_scores_gemma":[0.0011037228,0.00032506537,0.98934597,0.000010315771,0.000016378995,0.000007747653,0.000005992806,0.00013113995,0.0070673833,0.00011315355,0.0018077358,0.000065405446],"about_ca_topic_score_codex":0.00014357992,"about_ca_topic_score_gemma":0.00039803848,"teacher_disagreement_score":0.21139564,"about_ca_system_score_codex":0.0000036364281,"about_ca_system_score_gemma":0.0000211966,"threshold_uncertainty_score":0.1844796},"labels":[],"label_agreement":null},{"id":"W2783157635","doi":"10.1016/j.mimet.2018.01.003","title":"Evaluation of MALDI-TOF mass spectrometry for the identification of bacteria growing as biofilms","year":2018,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe","funders":"","keywords":"Biofilm; Bacteria; Mass spectrometry; Microbiology; Chemistry; Chromatography; Matrix-assisted laser desorption/ionization; Biology; Genetics","score_opus":0.07215273635084596,"score_gpt":0.4108922014099644,"score_spread":0.33873946505911845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2783157635","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9198163,0.0003917208,0.07870019,0.00017701043,0.0006151625,0.00022809442,0.000017945704,0.0000022553345,0.000051319043],"genre_scores_gemma":[0.85198355,0.000050103758,0.14754024,0.000044645374,0.00031745626,0.0000043185514,0.000014318197,0.00000662186,0.00003877994],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99777675,0.0008930463,0.0009010056,0.00017347516,0.00013545815,0.00012029121],"domain_scores_gemma":[0.9967621,0.00025413246,0.0010704914,0.0002623495,0.0016188481,0.000032077798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012371767,0.00009469783,0.00023513821,0.00006683226,0.000064529544,0.000020621055,0.00031330212,0.0001517472,0.00015023102],"category_scores_gemma":[0.005971003,0.000060983428,0.00021280829,0.00014330733,0.0002073252,0.000011195699,0.000046863108,0.00008068122,0.0000014751862],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014854802,0.00005286707,0.00022153028,0.00001370581,0.00009385877,4.1725883e-8,0.000027927532,0.00000631472,0.9846202,0.000082903054,0.000084405576,0.014647672],"study_design_scores_gemma":[0.0004082136,0.00063993904,0.01062719,0.0000175565,0.0001658141,0.000023455186,0.00013750179,0.00012426566,0.98553413,0.0010763807,0.0011794484,0.000066124376],"about_ca_topic_score_codex":0.0000030087053,"about_ca_topic_score_gemma":8.427314e-7,"teacher_disagreement_score":0.06884004,"about_ca_system_score_codex":0.00002378452,"about_ca_system_score_gemma":0.00009703196,"threshold_uncertainty_score":0.71482795},"labels":[],"label_agreement":null},{"id":"W2788996358","doi":"10.1016/j.jid.2017.10.008","title":"Hot Stuff: Thermal Imaging Aids in Cellulitis Diagnosis","year":2018,"lang":"en","type":"letter","venue":"Journal of Investigative Dermatology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Women's College Hospital","funders":"Astellas Pharma; Regeneron Pharmaceuticals; Sanofi","keywords":"Cellulitis; Medicine; Differential diagnosis; Dermatology; Intensive care medicine; Pathology","score_opus":0.02295594331022498,"score_gpt":0.26122572004844186,"score_spread":0.23826977673821687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2788996358","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85222054,0.00079599844,0.00005812623,0.14556305,0.0008773647,0.00016262505,0.00003347856,0.0000075980847,0.00028120034],"genre_scores_gemma":[0.74665856,0.00018259573,0.0021321278,0.24585062,0.004516978,0.000031206266,0.0002807865,0.00007967696,0.00026745858],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971665,0.0007995964,0.001036982,0.00038957386,0.00021955918,0.0003877897],"domain_scores_gemma":[0.9977727,0.0001329758,0.0010598307,0.0003631335,0.0005652138,0.00010613937],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042495583,0.00031821794,0.0006071352,0.0002988969,0.00007025018,0.00006859203,0.0005261177,0.00061363674,0.000114689814],"category_scores_gemma":[0.0011954741,0.00030166903,0.00023108764,0.0001638702,0.0007604686,0.00001834939,0.00014009883,0.0010959094,0.000024614797],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004497345,0.00006513941,0.023255134,0.00009125302,0.00011714083,0.0007958788,0.0003700411,0.0000015778207,0.24095435,0.000011859815,0.73384374,0.00044890962],"study_design_scores_gemma":[0.001044544,0.00026167443,0.012350268,0.00024855707,0.00007716647,0.0015036728,0.00020495782,0.000014222176,0.5050092,0.00068726746,0.47810116,0.00049730786],"about_ca_topic_score_codex":0.000032197833,"about_ca_topic_score_gemma":0.000033413806,"teacher_disagreement_score":0.26405483,"about_ca_system_score_codex":0.000054919936,"about_ca_system_score_gemma":0.00032172442,"threshold_uncertainty_score":0.99994355},"labels":[],"label_agreement":null},{"id":"W2789338382","doi":"10.1016/s1473-3099(18)30093-8","title":"Clinical bacteriology in low-resource settings: today's solutions","year":2018,"lang":"en","type":"review","venue":"The Lancet Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":200,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St Mary's Hospital Centre; McGill University Health Centre","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Doctors Without Borders","keywords":"Bacteriology; Resource (disambiguation); Medicine; Risk analysis (engineering); Computer science; Biology","score_opus":0.0591986306973936,"score_gpt":0.3639259516733222,"score_spread":0.3047273209759286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2789338382","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00876868,0.98787796,0.000026010224,0.0001394892,0.0008127618,0.00071897614,0.00028921914,0.00011582081,0.0012510939],"genre_scores_gemma":[0.0031337228,0.9903814,0.000015368394,0.0006709247,0.0040620114,0.00015732362,0.0012182585,0.00004734741,0.00031361933],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99704695,0.0011161404,0.0007386956,0.00059644046,0.00007435342,0.00042742537],"domain_scores_gemma":[0.9982272,0.00023163526,0.00037695796,0.0009964884,0.00006956458,0.000098188066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00088728644,0.00029279292,0.00096532644,0.00006248534,0.00019240503,0.00008101365,0.00049941224,0.00037085684,0.000077278986],"category_scores_gemma":[0.001590459,0.00021382868,0.00045614908,0.00018323727,0.00033495278,0.000004100018,0.00032772834,0.00031687575,0.00014396026],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009317454,0.000959539,0.015386097,0.0063575394,0.0005893247,0.000010674031,0.00007053454,0.0000052153687,0.00012705696,0.00023743091,0.08883661,0.8873268],"study_design_scores_gemma":[0.0002473276,0.00008784097,0.0024136757,0.0011746857,0.00019095247,0.00002243945,0.0000085699385,0.0000033278839,0.0000010155226,0.000059811886,0.99554044,0.00024991104],"about_ca_topic_score_codex":0.000017137027,"about_ca_topic_score_gemma":0.00014791975,"teacher_disagreement_score":0.9067038,"about_ca_system_score_codex":0.000041970117,"about_ca_system_score_gemma":0.00024402232,"threshold_uncertainty_score":0.87196803},"labels":[],"label_agreement":null},{"id":"W2793220261","doi":"10.1128/jcm.01934-17","title":"CLSI Methods Development and Standardization Working Group Best Practices for Evaluation of Antimicrobial Susceptibility Tests","year":2018,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":747,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Standardization; Medicine; Medical physics; Computer science","score_opus":0.3671917425813457,"score_gpt":0.5593165973703706,"score_spread":0.19212485478902497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793220261","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07697647,0.9059598,0.012400783,0.000047142617,0.0029988955,0.0014701866,0.00009198636,0.000006055719,0.00004869137],"genre_scores_gemma":[0.0036623771,0.82966113,0.1640709,0.000049670904,0.0018198573,0.0000179381,0.0006068419,0.00004625938,0.00006503985],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99306077,0.0028833053,0.0032505519,0.00051911356,0.00009210142,0.00019415181],"domain_scores_gemma":[0.9891323,0.0011483856,0.0075188777,0.00032903813,0.0017857143,0.00008569119],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.021991454,0.000256227,0.00154699,0.00011348074,0.00008751531,0.00004232785,0.00029883615,0.0008109787,0.000015115369],"category_scores_gemma":[0.020649262,0.00020603223,0.0005039079,0.000110325236,0.00029789092,0.000012238888,0.00014901467,0.00029445815,0.0000013708221],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002004743,0.00024898865,0.00035528434,0.0016489977,0.00038015793,1.9401232e-7,0.000026493017,6.694609e-7,0.045360457,0.000003820361,0.00043310632,0.95134133],"study_design_scores_gemma":[0.0010520543,0.00066980865,0.00012010636,0.0017623102,0.0011867392,0.00010134256,0.000019694719,0.000003568346,0.0021556728,0.000021202573,0.9926953,0.0002122522],"about_ca_topic_score_codex":0.0000026731866,"about_ca_topic_score_gemma":0.00008146522,"teacher_disagreement_score":0.9922621,"about_ca_system_score_codex":0.00005493657,"about_ca_system_score_gemma":0.0012371667,"threshold_uncertainty_score":0.9876002},"labels":[],"label_agreement":null},{"id":"W2793242631","doi":"10.1111/trf.14567","title":"Development of a proof of principle for universal neutralization of antibiotics in cord blood by‐products used for sterility testing","year":2018,"lang":"en","type":"article","venue":"Transfusion","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Blood Services","funders":"","keywords":"Neutralization; Antibiotics; Penicillin; Gentamicin; Staphylococcus epidermidis; Microbiology; Antimicrobial; Chemistry; Medicine; Biology; Staphylococcus aureus; Bacteria; Immunology; Antibody","score_opus":0.04114259815275253,"score_gpt":0.29512761665971715,"score_spread":0.25398501850696464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793242631","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9848165,0.0000076734195,0.014442609,0.000012134055,0.00005211497,0.00061360444,0.000041472056,0.000003448736,0.000010462009],"genre_scores_gemma":[0.96908104,0.0000017312315,0.03072886,0.0000021228796,0.00001900464,0.0000015578721,0.00013878601,0.0000070298865,0.000019850884],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932194,0.00002094282,0.00034258005,0.00018367062,0.000050085237,0.000080761376],"domain_scores_gemma":[0.99933654,0.000018712351,0.00013414475,0.00013869592,0.00035754585,0.000014331919],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026762308,0.000058436566,0.00012118868,0.000028098904,0.000028476818,0.0000023617374,0.00006795267,0.00006240605,0.0000018213351],"category_scores_gemma":[0.00019395872,0.000061513754,0.00002407852,0.00010883921,0.00005658917,0.0000042087318,0.0000140225375,0.000013344019,2.1769848e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038856748,0.00022156877,0.0074326247,0.00041643984,0.000008354451,9.776519e-9,0.00039954556,0.000006000883,0.98941135,0.000014623651,0.000003109255,0.0016977771],"study_design_scores_gemma":[0.00084642123,0.00045585982,0.013962594,0.00004972449,0.000014465868,1.6311631e-7,0.000060047834,0.00027610364,0.9840762,0.0000064694564,0.0001962842,0.00005563838],"about_ca_topic_score_codex":0.000021168511,"about_ca_topic_score_gemma":0.00022904213,"teacher_disagreement_score":0.016286252,"about_ca_system_score_codex":0.0000059353383,"about_ca_system_score_gemma":0.00009824966,"threshold_uncertainty_score":0.2508458},"labels":[],"label_agreement":null},{"id":"W2797831283","doi":"10.1016/j.cmi.2018.03.044","title":"Point-of-care and point-of-‘can’: leveraging reference-laboratory capacity for integrated diagnosis of fever syndromes in the tropics","year":2018,"lang":"en","type":"review","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Workload; Point-of-care testing; Computer science; Preparedness; Medicine; Point of care; Data science; Risk analysis (engineering); Pathology","score_opus":0.1026921065019236,"score_gpt":0.36779543600799613,"score_spread":0.2651033295060725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2797831283","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.74014384,0.25847167,0.00008228577,0.000020961694,0.0003625346,0.0005704886,0.00032810963,0.0000043837204,0.000015712618],"genre_scores_gemma":[0.11819286,0.8804112,0.00045983624,0.00005987506,0.00009220366,0.00005463922,0.0007078917,0.0000122398,0.00000924774],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99807274,0.00062520674,0.00084318937,0.00034161715,0.000014296976,0.000102964004],"domain_scores_gemma":[0.99854475,0.00040730834,0.0005281516,0.00023702874,0.00026112812,0.000021616397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008279383,0.00015921041,0.0007103748,0.00006553435,0.00004225659,0.00000788512,0.00010376481,0.0006129249,0.0000070421434],"category_scores_gemma":[0.0014357152,0.00011318179,0.00016613626,0.00010832432,0.00049861404,0.00000543139,0.000060457383,0.00021180733,3.7376583e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024213416,0.00074512465,0.14081536,0.02971038,0.00070228934,6.633632e-7,0.00065219396,2.1464747e-7,0.03028216,0.00034117428,0.0023732034,0.7941351],"study_design_scores_gemma":[0.00091664086,0.0022026359,0.009381873,0.003749708,0.000524321,0.000041754105,0.00015583454,0.0000015585376,0.0033974925,0.00011637159,0.979131,0.00038085558],"about_ca_topic_score_codex":0.000037728107,"about_ca_topic_score_gemma":0.00012371689,"teacher_disagreement_score":0.97675776,"about_ca_system_score_codex":0.000010969886,"about_ca_system_score_gemma":0.00010294303,"threshold_uncertainty_score":0.4727438},"labels":[],"label_agreement":null},{"id":"W2799812968","doi":"10.1016/j.vetmic.2018.03.025","title":"A T4virus prevents biofilm formation by Trueperella pyogenes","year":2018,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Ministério da Ciência, Tecnologia e Inovação; Financiadora de Estudos e Projetos; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Biofilm; Biology; Microbiology; Multiplicity of infection; Phage therapy; Bacteriophage; Pathogen; Antibiotics; Immune system; Bacteria; Virology; Immunology; Escherichia coli; Virus; Genetics","score_opus":0.024483687181630496,"score_gpt":0.275850192093578,"score_spread":0.25136650491194745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2799812968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980954,0.00019858603,0.0005232645,0.00007418125,0.00044193934,0.00016130273,0.000100330006,0.00003145977,0.0003735417],"genre_scores_gemma":[0.99663645,0.000051394993,0.0006624347,0.0003118123,0.0002429281,0.00001670634,0.0008839017,0.000016493323,0.0011778724],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902695,0.00013951483,0.00024339525,0.00033922825,0.000021218428,0.00022966822],"domain_scores_gemma":[0.9994653,0.000007641491,0.0000930123,0.00031748062,0.000069273585,0.0000473343],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001521921,0.00013579028,0.000115901974,0.000035374935,0.00012296498,0.000023826018,0.00019280825,0.00018164274,0.00016009255],"category_scores_gemma":[0.00004656894,0.00013466994,0.000058098834,0.00006072972,0.00015261109,0.0000070024,0.00013101015,0.00004352028,0.00017380198],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010154841,0.00004922721,0.0001422626,0.000012008419,0.0000151490785,8.2321367e-7,0.00004432029,9.652185e-8,0.98834866,0.0000049615005,0.008938823,0.0023421254],"study_design_scores_gemma":[0.00025656604,0.0009153264,0.00016773588,0.0000057831394,0.000005358687,0.0002046495,0.000021339094,0.000009897444,0.77199,0.000011349404,0.22626929,0.00014271862],"about_ca_topic_score_codex":0.000015579082,"about_ca_topic_score_gemma":0.000012343776,"teacher_disagreement_score":0.21733047,"about_ca_system_score_codex":0.000014948553,"about_ca_system_score_gemma":0.000021120137,"threshold_uncertainty_score":0.5491681},"labels":[],"label_agreement":null},{"id":"W2802294178","doi":"10.1136/sextrans-2017-053502","title":"Quality assurance for antimicrobial susceptibility testing of<i>Neisseria gonorrhoeae</i>in Latin American and Caribbean countries, 2013–2015","year":2018,"lang":"en","type":"article","venue":"Sexually Transmitted Infections","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Public Health Agency of Canada","funders":"Saskatchewan Health Research Foundation","keywords":"Cefixime; Neisseria gonorrhoeae; Medicine; Etest; Penicillin; Spectinomycin; Microbiology; Ciprofloxacin; Antimicrobial; Tetracycline; Erythromycin; Antibiotics; Ceftriaxone; Biology","score_opus":0.020978641086067062,"score_gpt":0.30087548507589706,"score_spread":0.27989684398983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2802294178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991447,0.000031283045,0.007070589,0.00030698866,0.00026055385,0.00045576302,0.00022884755,0.000041133655,0.00015784387],"genre_scores_gemma":[0.99438936,0.00002113506,0.0050148293,0.00011271659,0.00018380214,0.000031503456,0.00015824189,0.000021551245,0.00006688607],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99847674,0.00016430188,0.00055103406,0.000495268,0.000045144945,0.00026752305],"domain_scores_gemma":[0.9986777,0.00019377541,0.0002048135,0.00036505656,0.00048483183,0.00007385898],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007054008,0.00017360624,0.00027572853,0.00007558851,0.00018868333,0.000044526398,0.00011450467,0.00011422086,0.000014552432],"category_scores_gemma":[0.00078213203,0.00019326633,0.000059474845,0.000365758,0.00047265142,0.000016244396,0.000027298816,0.00009982467,0.0000022716847],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007363362,0.00014697747,0.35837272,0.000083949366,0.000022351049,3.433954e-8,0.0001829537,0.00001175517,0.6391908,0.000047883645,0.00027243467,0.001594503],"study_design_scores_gemma":[0.0011366293,0.000854218,0.9487231,0.00003599683,0.00003102926,0.0000058604487,0.00022455971,0.00025306552,0.03843236,0.00010679099,0.009827551,0.00036884606],"about_ca_topic_score_codex":0.0027847304,"about_ca_topic_score_gemma":0.02732548,"teacher_disagreement_score":0.60075843,"about_ca_system_score_codex":0.00002269741,"about_ca_system_score_gemma":0.00018106149,"threshold_uncertainty_score":0.9904233},"labels":[],"label_agreement":null},{"id":"W2807833156","doi":"10.1111/myc.12800","title":"Evaluation of three <scp>MALDI</scp>‐<scp>TOF</scp> mass spectrometry libraries for the identification of filamentous fungi in three clinical microbiology laboratories in Manitoba, Canada","year":2018,"lang":"en","type":"article","venue":"Mycoses","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Brandon University; University of Manitoba; Shared Health; Manitoba Health","funders":"","keywords":"Clinical microbiology; Mass spectrometry; Identification (biology); Matrix-assisted laser desorption/ionization; Chemistry; Chromatography; Computational biology; Microbiology; Biology; Botany; Desorption","score_opus":0.047182448076911264,"score_gpt":0.29345897625288064,"score_spread":0.24627652817596937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2807833156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964646,0.0011160135,0.0007967862,0.000060438324,0.00063668727,0.00061917346,0.00019083662,0.0000069264643,0.00010852477],"genre_scores_gemma":[0.99851304,0.000057347483,0.00077035185,0.00006527203,0.00024278922,0.000059723825,0.00020723461,0.000015896727,0.00006835645],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981165,0.00024758678,0.00086237636,0.00037360555,0.00016787126,0.00023204413],"domain_scores_gemma":[0.9977531,0.00067866774,0.00045108888,0.0004882115,0.0005960803,0.0000328583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022374992,0.00014167199,0.0002526122,0.000072890776,0.000068801004,0.000041945426,0.00033557526,0.00018016105,0.000015528409],"category_scores_gemma":[0.007171532,0.00012609977,0.00006363367,0.00033517115,0.00026323032,0.000018598714,0.00009314633,0.000093750394,0.000002636875],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016472302,0.00007331332,0.14011331,0.00003153087,0.000046924408,1.9135693e-7,0.00008491237,0.000017803317,0.85603386,0.00015442063,0.002228368,0.0011989095],"study_design_scores_gemma":[0.0005222638,0.00016842959,0.5280013,0.00001774407,0.000057105233,0.0000012078593,0.00077347475,0.00038878573,0.46584815,0.0015511591,0.0026303239,0.00004002716],"about_ca_topic_score_codex":0.010318228,"about_ca_topic_score_gemma":0.5713889,"teacher_disagreement_score":0.5610707,"about_ca_system_score_codex":0.00006489613,"about_ca_system_score_gemma":0.0005882299,"threshold_uncertainty_score":0.99627215},"labels":[],"label_agreement":null},{"id":"W2808438593","doi":"10.1515/dx-2018-0020","title":"Combined international external quality assessment results of medical laboratory performance and reporting of samples with known antimicrobial resistance","year":2018,"lang":"en","type":"article","venue":"Diagnosis","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of British Columbia","funders":"","keywords":"Medicine; Clinical microbiology; External quality assessment; Antibiotic resistance; Quality assurance; Medical laboratory; Methicillin-resistant Staphylococcus aureus; Antimicrobial stewardship; Vancomycin; Internal medicine; Staphylococcus aureus; Intensive care medicine; Antibiotics; Microbiology; Pathology; Biology","score_opus":0.04217776104396412,"score_gpt":0.34345250843310005,"score_spread":0.30127474738913596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2808438593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99878883,0.000018754583,0.0002091331,0.00043388843,0.00012311754,0.00006480376,0.00007101262,0.0000052553514,0.00028522618],"genre_scores_gemma":[0.9960998,0.00012466725,0.0035008918,0.000054553115,0.00011232785,0.000007648886,0.00005310825,0.0000053091353,0.000041670293],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998683,0.000067636465,0.00073584076,0.00021875501,0.00021858634,0.00007620001],"domain_scores_gemma":[0.9984737,0.000050578565,0.00082994247,0.0002113838,0.00039405393,0.000040321152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012600509,0.0000647285,0.00015309833,0.00002289286,0.00004206566,0.000016190143,0.0001358959,0.00006546435,0.000025991143],"category_scores_gemma":[0.0017772793,0.0000573902,0.00002283259,0.000058863043,0.00022199469,0.0000071588297,0.00007984875,0.000045606655,2.5133244e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025432673,0.000108142,0.6102724,0.00007094941,0.000025016343,6.421313e-7,0.0000762,4.2227657e-7,0.3872952,0.00008262811,0.0006566836,0.0011574003],"study_design_scores_gemma":[0.0005705408,0.00011948519,0.6917097,0.00015965475,0.0000059223726,0.0000010741908,0.000033298402,0.000020034951,0.3062,0.0000046698888,0.001115252,0.000060391],"about_ca_topic_score_codex":0.00009310521,"about_ca_topic_score_gemma":0.00027454886,"teacher_disagreement_score":0.081437275,"about_ca_system_score_codex":0.000007972381,"about_ca_system_score_gemma":0.00011071188,"threshold_uncertainty_score":0.23403044},"labels":[],"label_agreement":null},{"id":"W2808502813","doi":"10.1128/jcm.00235-18","title":"Serratia marcescens Outbreak in a Neonatal Intensive Care Unit: New Insights from Next-Generation Sequencing Applications","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Institut National de la Recherche Scientifique; National Research Council Canada; McGill University; McGill University Health Centre; Université de Montréal; Ste. Anne's Hospital","funders":"","keywords":"Serratia marcescens; Outbreak; Biology; Pulsed-field gel electrophoresis; Microbiology; Typing; Multilocus sequence typing; Serratia; 16S ribosomal RNA; Bacteria; Genetics; Gene; Virology; Escherichia coli; Genotype","score_opus":0.11918962375345375,"score_gpt":0.3615702968466032,"score_spread":0.24238067309314942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2808502813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995184,0.00056262256,0.0028543968,0.00029911948,0.0008595363,0.00015435167,0.000024685827,0.0000051226493,0.00005615461],"genre_scores_gemma":[0.99345297,0.000067237575,0.0021694812,0.0011680812,0.0027087985,0.0000023773598,0.0003270229,0.00001214626,0.00009190642],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99806756,0.0003034416,0.0011361454,0.00030836975,0.00003634,0.00014816162],"domain_scores_gemma":[0.99773824,0.00008944936,0.0005639755,0.00027400078,0.0012137041,0.00012065138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027981467,0.00012722831,0.0003313678,0.00007423488,0.00006338093,0.000037211015,0.0002603937,0.00032748183,0.000049133207],"category_scores_gemma":[0.0011129351,0.00011217943,0.00014507404,0.00010667246,0.00018567608,0.00001574787,0.00009459876,0.00028932345,0.00002605711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012626422,0.000016037166,0.015046748,0.000003840375,0.00003811998,0.0000029088885,0.0007588465,0.0000048146617,0.9768072,0.00001626011,0.0007617927,0.0064172046],"study_design_scores_gemma":[0.008865522,0.0040457784,0.14579335,0.00030201735,0.0002490005,0.00065225083,0.020425094,0.0005329318,0.5127617,0.00147261,0.30362123,0.0012785007],"about_ca_topic_score_codex":0.00013110873,"about_ca_topic_score_gemma":0.0029992631,"teacher_disagreement_score":0.46404544,"about_ca_system_score_codex":0.00003287286,"about_ca_system_score_gemma":0.00046852496,"threshold_uncertainty_score":0.45745444},"labels":[],"label_agreement":null},{"id":"W2808961752","doi":"10.1016/j.diagmicrobio.2018.06.010","title":"Direct identification and antimicrobial susceptibility testing of microorganisms from positive blood cultures following isolation by lysis-centrifugation","year":2018,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Public Health Ontario; London Health Sciences Centre","funders":"","keywords":"Microbiology; Blood culture; Antimicrobial; Lysis; Isolation (microbiology); Biology; Medicine; Antibiotics; Immunology","score_opus":0.0045483108292528615,"score_gpt":0.22448862143307807,"score_spread":0.2199403106038252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2808961752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975364,0.0005018152,0.00084948546,0.000055797012,0.0002276055,0.0002988833,0.0004613761,0.000028327891,0.000040274488],"genre_scores_gemma":[0.9972511,0.00007966025,0.00024007377,0.00013878892,0.00014370597,0.000009359152,0.0020992814,0.000013072592,0.0000249779],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871236,0.00020177229,0.00035005496,0.00053926813,0.00003185726,0.00016470959],"domain_scores_gemma":[0.99901295,0.0002440891,0.00021449478,0.00022061766,0.00021703617,0.00009080703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023064103,0.0001652436,0.00018527337,0.00004272956,0.00025399265,0.000056245222,0.000069351896,0.00015731598,0.000017218073],"category_scores_gemma":[0.0028602446,0.0001709802,0.000059380513,0.000109756926,0.0002911614,0.00002151673,0.000075211705,0.00005909036,0.0000038091086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037941518,0.000134801,0.26225647,0.000016422298,0.000063991734,5.0541513e-7,0.00010746149,6.659282e-7,0.73681056,0.0000069547928,0.00024164427,0.00032257845],"study_design_scores_gemma":[0.0006119363,0.00014986354,0.2421572,0.000041677355,0.0002212135,0.0000062153254,0.000031323758,0.000022984634,0.75640875,0.00007437492,0.000093016635,0.00018143769],"about_ca_topic_score_codex":0.00018699725,"about_ca_topic_score_gemma":0.000098255274,"teacher_disagreement_score":0.020099264,"about_ca_system_score_codex":0.00001218379,"about_ca_system_score_gemma":0.000042480133,"threshold_uncertainty_score":0.6972371},"labels":[],"label_agreement":null},{"id":"W2883006406","doi":"10.1186/s13007-018-0323-6","title":"Differentiation between closely-related Impatiens spp. and regional biotypes of Impatiens glandulifera using a highly-simplified and inexpensive method for MALDI-TOF MS","year":2018,"lang":"en","type":"article","venue":"Plant Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Centre for International Agricultural Research; Agriculture and Agri-Food Canada; Ministry of Agriculture of the People's Republic of China; Department for International Development","keywords":"Impatiens; Biology; Weed; Botany; Balsam; Balsaminaceae","score_opus":0.055392606014274294,"score_gpt":0.37343676650253105,"score_spread":0.31804416048825673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2883006406","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9346157,0.000104609135,0.06453375,0.00006080106,0.000118316224,0.00029441377,0.00024171968,0.000011867374,0.000018846496],"genre_scores_gemma":[0.7456149,0.000022580252,0.25347397,0.000037661608,0.00018030092,0.0000073050314,0.0006143779,0.000015375388,0.000033561875],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867916,0.00032392138,0.00038497156,0.00036762515,0.00006967,0.00017467995],"domain_scores_gemma":[0.9989651,0.0002718623,0.00026323184,0.00019383356,0.00022359585,0.000082379374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067902677,0.00014899488,0.00028284968,0.000070992945,0.00011604395,0.000029614737,0.00007034231,0.00018585779,0.0000144734795],"category_scores_gemma":[0.00051511574,0.0001340584,0.00005328325,0.000076240074,0.00011062532,0.000008990152,0.00007912622,0.00005799806,4.778709e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015388087,0.000022425873,0.012514779,0.000050242983,0.00008766844,1.2175501e-7,0.00035971275,0.0000010496746,0.9783523,0.00007482331,0.00006985507,0.008313126],"study_design_scores_gemma":[0.0015936107,0.00080912176,0.1527803,0.00006472846,0.00022348967,0.000040254137,0.00014163106,0.0073605557,0.83300704,0.0011482862,0.0024401809,0.0003908244],"about_ca_topic_score_codex":0.00011505626,"about_ca_topic_score_gemma":0.00002371251,"teacher_disagreement_score":0.18900082,"about_ca_system_score_codex":0.000009632332,"about_ca_system_score_gemma":0.000036314483,"threshold_uncertainty_score":0.5466743},"labels":[],"label_agreement":null},{"id":"W2884647841","doi":"10.7939/r3474733q","title":"Development of mass spectrometry for bacteria identification","year":2001,"lang":"en","type":"article","venue":"Library and Archives Canada (Government of Canada)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Mass spectrometry; Identification (biology); Bacteria; Chemistry; Computer science; Computational biology; Chromatography; Biology","score_opus":0.006269316252125411,"score_gpt":0.17361863054711363,"score_spread":0.16734931429498823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884647841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98972785,0.000044309163,0.0034207753,0.000353049,0.00013240929,0.00013757021,0.00006560215,0.0000026590742,0.006115764],"genre_scores_gemma":[0.979087,0.000027742706,0.01760586,0.00008944187,0.000042338146,0.000007604543,0.000060612525,0.000008592978,0.0030707899],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991406,0.000018244733,0.00028081617,0.00016886016,0.00027425302,0.00011723311],"domain_scores_gemma":[0.9996089,0.00002675219,0.00014529451,0.00014856715,0.0000013752676,0.00006914381],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000018795616,0.00007646585,0.00010206958,0.000012112943,0.00007257407,0.000011139505,0.000111521294,0.000020102729,0.000017497552],"category_scores_gemma":[0.0000097637185,0.00008098142,0.000017808308,0.000038435817,0.00002645534,0.000012669712,0.0000405855,0.000021419315,1.1544236e-9],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015691349,0.00001375747,0.007573434,0.000059125054,0.000023646253,4.384422e-7,0.000019117844,0.0000020208547,0.9870328,0.0017601559,0.00008027766,0.0032783411],"study_design_scores_gemma":[0.00016151111,0.000022636234,0.107717484,0.00001310762,0.000005393359,0.0000013034487,0.0004005889,0.00009256545,0.87362343,0.00012386308,0.017752087,0.00008600759],"about_ca_topic_score_codex":0.00007990251,"about_ca_topic_score_gemma":0.00371479,"teacher_disagreement_score":0.11340932,"about_ca_system_score_codex":0.0000025101624,"about_ca_system_score_gemma":0.0005470825,"threshold_uncertainty_score":0.33023265},"labels":[],"label_agreement":null},{"id":"W2884690521","doi":"10.1186/s12866-018-1211-y","title":"Bacterial DNA patterns identified using paired-end Illumina sequencing of 16S rRNA genes from whole blood samples of septic patients in the emergency room and intensive care unit","year":2018,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Foothills Medical Centre; University of Calgary","funders":"Alberta Innovates; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale","keywords":"Sepsis; Biology; Blood culture; DNA extraction; Intensive care unit; Whole blood; Microbiology; Streptococcus; Bacteria; Immunology; Polymerase chain reaction; Medicine; Gene; Internal medicine; Antibiotics; Genetics","score_opus":0.04482425950427814,"score_gpt":0.2693336596996436,"score_spread":0.22450940019536547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884690521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99846715,0.00016827202,0.000120999284,0.000008071252,0.0004282507,0.00021454699,0.00058217044,0.000004248443,0.0000062676545],"genre_scores_gemma":[0.99802554,0.000020795278,0.0004122671,0.00003386408,0.0001530205,0.0000039874612,0.0013280463,0.000012997113,0.000009478713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998643,0.00030391692,0.00048041804,0.00035591263,0.00003736006,0.00017941353],"domain_scores_gemma":[0.99876773,0.00004055087,0.00027590597,0.00034443047,0.00054654723,0.00002485898],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017361107,0.0001451967,0.00023050138,0.000055586395,0.000065703905,0.000012831223,0.0002155341,0.00016157815,0.000083296356],"category_scores_gemma":[0.0003173691,0.00012480869,0.00006605956,0.000076261385,0.00018105806,0.000007509449,0.0001572477,0.000054246542,0.000001404346],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040694507,0.000024311665,0.27102733,0.000046019566,0.000024801617,3.448419e-7,0.0014316165,7.126824e-7,0.72724074,0.0000018003566,0.000011619833,0.0001500252],"study_design_scores_gemma":[0.0006474325,0.00020148695,0.34671876,0.000052685587,0.00006395294,0.000008951305,0.005859005,0.000008793986,0.6461567,0.000019702575,0.00011593034,0.00014658726],"about_ca_topic_score_codex":0.0013774587,"about_ca_topic_score_gemma":0.005981439,"teacher_disagreement_score":0.08108399,"about_ca_system_score_codex":0.00001166306,"about_ca_system_score_gemma":0.000068893496,"threshold_uncertainty_score":0.50895506},"labels":[],"label_agreement":null},{"id":"W2887815063","doi":"10.1111/ijlh.12908","title":"Results of a cross Canada survey of blood film review practice patterns by technologists and pathologists","year":2018,"lang":"en","type":"article","venue":"International Journal of Laboratory Hematology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Kingston General Hospital; Toronto General Hospital","funders":"","keywords":"Medicine; Blood film; Family medicine; Pathology","score_opus":0.014057973409427426,"score_gpt":0.3265169665757916,"score_spread":0.31245899316636416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2887815063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99335366,0.0044587795,0.000110895184,0.00080156163,0.00038764623,0.00006200917,0.0007738531,0.0000024058131,0.00004919206],"genre_scores_gemma":[0.99749696,0.0015438551,0.00046236283,0.00035474298,0.000045448658,0.0000012676384,0.00007254505,0.000006086331,0.000016746986],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985019,0.00024544442,0.00080437434,0.0001642878,0.00019466145,0.000089305795],"domain_scores_gemma":[0.9942442,0.00014482385,0.0012375126,0.00020191593,0.0041284417,0.000043095875],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0011221521,0.00008580455,0.00025708534,0.000042535932,0.000018419669,0.000011081514,0.00033106533,0.00010868035,0.000015317972],"category_scores_gemma":[0.010636621,0.00007799078,0.000028478667,0.00008961615,0.0002679984,0.000014872765,0.000093075374,0.000095976626,3.3278803e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081371306,0.00039656562,0.34169775,0.00033013648,0.00044764724,0.00010289146,0.00005798922,0.0000010162443,0.63704664,0.00015612687,0.01800986,0.0009396464],"study_design_scores_gemma":[0.0020316993,0.00075495,0.16290636,0.0007149716,0.00009691877,0.0013642625,0.00010540072,0.000005610393,0.8116244,0.000029446484,0.020126948,0.00023900844],"about_ca_topic_score_codex":0.008067292,"about_ca_topic_score_gemma":0.027366856,"teacher_disagreement_score":0.1787914,"about_ca_system_score_codex":0.000013015763,"about_ca_system_score_gemma":0.00044766383,"threshold_uncertainty_score":0.9985381},"labels":[],"label_agreement":null},{"id":"W2890454087","doi":"10.14745/ccdr.v44i05a04","title":"Misidentification of Risk Group 3/Security Sensitive Biological Agents by MALDI-TOF MS in Canada: November 2015–October 2017","year":2018,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Medicine; Environmental health; Medical emergency","score_opus":0.018336234212386757,"score_gpt":0.26050341634010155,"score_spread":0.2421671821277148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2890454087","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976344,0.00037696134,0.000027714592,0.00018090874,0.00027352027,0.00022437364,0.000576681,0.0000066372736,0.00069877837],"genre_scores_gemma":[0.99687326,0.00012933576,0.00006410451,0.00019497336,0.000057477424,0.000015946598,0.0024095287,0.000014283077,0.00024111435],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99810296,0.00030451157,0.0006242786,0.00044595374,0.0002478247,0.00027444292],"domain_scores_gemma":[0.99747676,0.000056953726,0.00043356753,0.001409675,0.00036794104,0.00025510733],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005220761,0.00016995298,0.00025120817,0.000024927971,0.0001466441,0.000022323271,0.00035110445,0.00008845893,0.000117929034],"category_scores_gemma":[0.001116928,0.00017609101,0.00006140174,0.0001258772,0.00018578688,0.000009854003,0.00022613854,0.00014486496,0.0000017387495],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024800844,0.00031301167,0.66683537,0.000048262555,0.00010990212,0.00019982012,0.00006739813,0.000015028378,0.1589227,0.000027288812,0.17282066,0.00039254155],"study_design_scores_gemma":[0.00040009696,0.000024575496,0.94336075,0.00003842814,0.000035393594,0.000027391892,0.00027558807,0.00027534366,0.014856622,0.00004761602,0.040345125,0.0003130599],"about_ca_topic_score_codex":0.99139166,"about_ca_topic_score_gemma":0.9987414,"teacher_disagreement_score":0.27652538,"about_ca_system_score_codex":0.00030245207,"about_ca_system_score_gemma":0.0024689771,"threshold_uncertainty_score":0.7180783},"labels":[],"label_agreement":null},{"id":"W2891904278","doi":"10.14745/ccdr.v44i05a02","title":"An overview of the National Microbiology Laboratory emergency management program","year":2018,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Canadian Public Health Association; Public Health Agency of Canada","funders":"","keywords":"Emergency management; Standardization; Certification; Notice; Medical emergency; Quality management; Engineering management; Engineering; Medicine; Process management; Operations management; Management system; Computer science; Political science","score_opus":0.03831422897779063,"score_gpt":0.3333369911414446,"score_spread":0.295022762163654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2891904278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99612916,0.00078720076,0.000005133366,0.00024815893,0.0003496926,0.0002926054,0.0001146986,0.000012543525,0.0020607854],"genre_scores_gemma":[0.99835485,0.00009433388,0.0002807736,0.00027278,0.000068451714,0.000032562526,0.00035799918,0.000008472932,0.00052979245],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99915797,0.00014135332,0.00028656222,0.00018993442,0.00010873366,0.00011543179],"domain_scores_gemma":[0.9983459,0.0000035467158,0.00015962656,0.00095531583,0.0004485688,0.000087058295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002747729,0.000074294905,0.000080243284,0.000010671257,0.00014317912,0.000008574829,0.00041369643,0.0000324944,0.000095350006],"category_scores_gemma":[0.00014054816,0.00006384313,0.000045225606,0.000117536525,0.00011419209,0.0000035816781,0.00018421772,0.000040514653,7.574526e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000081432554,0.00070251257,0.10822949,0.00025210364,0.00022015382,0.000021667342,0.000025533533,0.000017767394,0.81717867,0.001142949,0.069911174,0.0022165522],"study_design_scores_gemma":[0.00017518466,0.000051751438,0.2585048,0.000030995212,0.00004113546,0.000016198765,0.00006059148,0.000055632503,0.01251663,0.00009987545,0.72825783,0.00018937902],"about_ca_topic_score_codex":0.0071404846,"about_ca_topic_score_gemma":0.107860915,"teacher_disagreement_score":0.80466205,"about_ca_system_score_codex":0.000037969075,"about_ca_system_score_gemma":0.00084467983,"threshold_uncertainty_score":0.99947107},"labels":[],"label_agreement":null},{"id":"W2891918810","doi":"10.3138/jammi.2017-0005","title":"A clinical vignette on <i>Raoultella planticola</i> bacteremia","year":2018,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Bacteremia; Medicine; Levofloxacin; Osteomyelitis; Internal medicine; Heel; Surgery; Microbiology; Antibiotics","score_opus":0.0063767533906195035,"score_gpt":0.25399263115631704,"score_spread":0.24761587776569755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2891918810","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954211,0.000062602856,0.000015224103,0.0028269694,0.0014456114,0.000052751257,0.000029689838,0.0000015463287,0.00014451711],"genre_scores_gemma":[0.9958569,0.000085194915,0.000007373685,0.0032698412,0.0006054367,4.3994245e-7,0.000009812599,0.000004042122,0.00016094994],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988577,0.00034024383,0.00043993926,0.00010946741,0.00014791895,0.000104749546],"domain_scores_gemma":[0.9987559,0.0001462293,0.00056447566,0.0001253364,0.00025725146,0.00015086388],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010550355,0.00006654743,0.00016112528,0.000017071448,0.00008426137,0.000009102765,0.00017809024,0.00017360975,0.00005069374],"category_scores_gemma":[0.003831961,0.000046703353,0.00009063018,0.000046153444,0.00012431672,0.00000291847,0.000056475677,0.00018968288,8.719768e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026875557,0.00015706393,0.75048935,0.000021867128,0.00021580976,0.000003347237,0.00001777939,0.0000014980861,0.1391401,0.00008606272,0.10778958,0.0018087853],"study_design_scores_gemma":[0.0020741408,0.000644982,0.78758544,0.0001408411,0.00012711668,0.00008124652,0.000025348932,0.000014776154,0.012385487,0.0000997865,0.19664834,0.00017248909],"about_ca_topic_score_codex":0.0013120474,"about_ca_topic_score_gemma":0.026751194,"teacher_disagreement_score":0.12675461,"about_ca_system_score_codex":0.000059164126,"about_ca_system_score_gemma":0.000854382,"threshold_uncertainty_score":0.99100804},"labels":[],"label_agreement":null},{"id":"W2893002648","doi":"10.1093/ofid/ofy210.998","title":"1165. Comparing Patient Risk Factors, Sequence Type, and Resistance Loci Identification Approaches for Predicting Antibiotic Resistance in Escherichia coli Bloodstream Infections","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"","keywords":"Medicine; Antibiotic resistance; Logistic regression; Antibiotics; Cephalosporin; Receiver operating characteristic; Antibiotic therapy; Internal medicine; Microbiology; Biology","score_opus":0.03190209901275125,"score_gpt":0.27765251601799484,"score_spread":0.24575041700524358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2893002648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996386,0.0002821406,0.0004306595,0.000040603085,0.00021901615,0.00090587325,0.00014887922,0.00004401873,0.001542821],"genre_scores_gemma":[0.9987009,0.000052921805,0.00043161807,0.000033090444,0.00007083078,0.00007219532,0.00042313733,0.000024906585,0.00019036047],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985907,0.00012838742,0.00037124238,0.00056574686,0.000083972525,0.00025992843],"domain_scores_gemma":[0.9989484,0.000055017892,0.00029166814,0.00038652713,0.0002210093,0.00009739802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022133027,0.00017454481,0.00019532045,0.000057964575,0.0005391892,0.00031806424,0.00018611911,0.00009406387,0.000006491962],"category_scores_gemma":[0.0009777674,0.0001866708,0.000044682776,0.00028718027,0.00017900974,0.000050973056,0.00018000834,0.00008047981,0.000002888981],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000096392665,0.0002909382,0.9689786,0.000068690504,0.00004079615,2.3041366e-7,0.00015898436,0.000025313517,0.029034637,0.00033032006,0.00052438583,0.00045075413],"study_design_scores_gemma":[0.0013444034,0.00051942986,0.9636095,0.00016234722,0.0001383403,0.0000021903218,0.0010524346,0.0011827106,0.025972337,0.0017937215,0.0036194485,0.0006031038],"about_ca_topic_score_codex":0.00042597792,"about_ca_topic_score_gemma":0.013038682,"teacher_disagreement_score":0.012612704,"about_ca_system_score_codex":0.000055942917,"about_ca_system_score_gemma":0.00009774849,"threshold_uncertainty_score":0.76122147},"labels":[],"label_agreement":null},{"id":"W2894510859","doi":"10.1128/jcm.01387-18","title":"Rapid Identification of Candida Species from Positive Blood Cultures by Use of the FilmArray Blood Culture Identification Panel","year":2018,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Health Sciences Centre; University of Toronto; Mount Sinai Hospital; Sunnybrook Health Science Centre","funders":"","keywords":"Blood culture; Identification (biology); Microbiology; Biology; Antibiotics; Ecology","score_opus":0.04519174991621304,"score_gpt":0.30598578841852137,"score_spread":0.2607940385023083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2894510859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97573507,0.0010830472,0.00009659062,0.01654944,0.002661263,0.00033472173,0.0035131346,0.0000050408576,0.000021675369],"genre_scores_gemma":[0.9151848,0.0038146307,0.0016956127,0.041701503,0.013219053,0.000013030508,0.011818383,0.00011628515,0.012436684],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9947681,0.0009838943,0.0033285778,0.0005348531,0.00016012328,0.00022443892],"domain_scores_gemma":[0.9909942,0.00041812952,0.0061081024,0.00081854925,0.0016019559,0.00005902517],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0011036522,0.00030198478,0.0009002743,0.000067901674,0.00009221188,0.00006934782,0.00091135694,0.0016091496,0.000106927255],"category_scores_gemma":[0.004020803,0.00020839671,0.0007981712,0.00012725808,0.0008562651,0.000020211894,0.00016652915,0.0010085921,0.0000049132277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008657854,0.00017507309,0.0017683264,0.000030523523,0.0005032743,0.0000014724832,0.00006874248,3.5830092e-7,0.6286341,0.0000013244454,0.36864665,0.00008357901],"study_design_scores_gemma":[0.0008104857,0.00044176044,0.018913226,0.00013961697,0.00080189214,0.000073874195,0.000048946767,6.0622654e-7,0.6962526,0.00005039027,0.28224745,0.00021918773],"about_ca_topic_score_codex":0.000067457426,"about_ca_topic_score_gemma":0.00003459922,"teacher_disagreement_score":0.08639921,"about_ca_system_score_codex":0.000014301035,"about_ca_system_score_gemma":0.00021184137,"threshold_uncertainty_score":0.99968696},"labels":[],"label_agreement":null},{"id":"W2894588678","doi":"10.1093/ofid/ofy210.1657","title":"2001. Susceptibility of <i>Aerococcus urinae</i> to Fluoroquinolones: Broth Microdilution and Gradient Diffusion","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Ste. Anne's Hospital; Hôpital Maisonneuve-Rosemont; Centre Hospitalier de l’Université de Montréal; Institut National de Santé Publique du Québec; Université Laval","funders":"","keywords":"Etest; Broth microdilution; Ciprofloxacin; Levofloxacin; Microbiology; Medicine; Agar; Agar diffusion test; Chocolate agar; Agar dilution; Minimum inhibitory concentration; Biology; Bacteria; Antibiotics; Antibacterial activity","score_opus":0.012297123534664643,"score_gpt":0.2764211720532502,"score_spread":0.2641240485185855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2894588678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975019,0.00009353887,0.00025718735,0.00017125883,0.00021574844,0.0006883057,0.00008547398,0.000024850282,0.00096170855],"genre_scores_gemma":[0.99890727,0.00003999269,0.00017985408,0.00032804342,0.00009099163,0.00004492233,0.00011751938,0.000014712016,0.00027672495],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988566,0.00008320486,0.00026434398,0.00047059386,0.000079594334,0.00024563057],"domain_scores_gemma":[0.9990231,0.000012750156,0.000111842004,0.0004666931,0.00020818024,0.00017742957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015935003,0.00014691416,0.00017789935,0.000044808286,0.00021716753,0.000095162875,0.00021756002,0.00007679274,0.00008737989],"category_scores_gemma":[0.00030480584,0.00013997649,0.00006153234,0.00012419184,0.00017961068,0.00001693553,0.00050876423,0.00003441591,0.000026421327],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013813062,0.0002945569,0.32322538,0.00002781547,0.000015121766,2.444428e-7,0.00005071007,8.9381376e-7,0.6683429,0.00009127629,0.0047665606,0.003046403],"study_design_scores_gemma":[0.001397969,0.00227403,0.7526766,0.00007539149,0.00006531413,0.000020305506,0.0002005477,0.000028061708,0.22011402,0.0007028274,0.021974364,0.00047058682],"about_ca_topic_score_codex":0.00053068344,"about_ca_topic_score_gemma":0.0023759385,"teacher_disagreement_score":0.4482289,"about_ca_system_score_codex":0.000028253566,"about_ca_system_score_gemma":0.00005680851,"threshold_uncertainty_score":0.5708076},"labels":[],"label_agreement":null},{"id":"W2894892308","doi":"10.1093/ofid/ofv133.528","title":"Sending Repeat Cultures: Is There a Role in the Management of Bacteremic Episodes? (SCRIBE Study)","year":2015,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Medicine; Pathogenic organism; Microbiology","score_opus":0.023957091252417552,"score_gpt":0.31227300074921016,"score_spread":0.2883159094967926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2894892308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881415,0.00019042891,0.000019208102,0.0001563571,0.00008857534,0.0007754384,0.00002609301,0.000011578319,0.010590826],"genre_scores_gemma":[0.9990887,0.000033258213,0.000034192275,0.00022171975,0.000028945225,0.00009242056,0.00007286503,0.000011560912,0.00041630672],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990333,0.00015549969,0.00023639515,0.00029437238,0.000120828176,0.00015964807],"domain_scores_gemma":[0.99926096,0.0000098676355,0.00010699609,0.00049325015,0.0000711112,0.000057808596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031081156,0.000114975854,0.00013045412,0.000027412276,0.00008676454,0.00015054541,0.00040957268,0.000041786257,0.000026927295],"category_scores_gemma":[0.00006145933,0.000085194406,0.00006155114,0.00013490139,0.00003270972,0.000017087501,0.00030553612,0.000048807426,0.00001010731],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001269701,0.0012035348,0.9795653,0.000049753242,0.00014801523,0.00000930176,0.0014826106,0.000018403427,0.009303603,0.0004800972,0.0040694405,0.0035429623],"study_design_scores_gemma":[0.005931196,0.0014797786,0.85458136,0.00024696396,0.00032717714,0.000038418828,0.09177127,0.00007292712,0.010569336,0.005879844,0.028266236,0.0008355133],"about_ca_topic_score_codex":0.00039931913,"about_ca_topic_score_gemma":0.00046926545,"teacher_disagreement_score":0.12498397,"about_ca_system_score_codex":0.00002512604,"about_ca_system_score_gemma":0.000032040396,"threshold_uncertainty_score":0.3474127},"labels":[],"label_agreement":null},{"id":"W2896049415","doi":"10.1128/aac.01606-18","title":"Utility of Urine Cultures in Predicting Blood Culture Susceptibilities in Patients with Bacteremic Urinary Tract Infection","year":2018,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Urine; Urinary system; Blood culture; Antibiotics; Medicine; Bacteremia; Microbiology; Intensive care medicine; Internal medicine; Biology","score_opus":0.007396645740202362,"score_gpt":0.23911406172672287,"score_spread":0.23171741598652051,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2896049415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99948394,0.000008709851,0.0000059006998,0.000044358552,0.000058013364,0.00022843837,0.000018848996,0.000009050137,0.00014271695],"genre_scores_gemma":[0.9992474,0.000110523535,0.00014123853,0.00019017793,0.00008531944,0.0000023543198,0.00011720195,0.00001223228,0.00009358309],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99915576,0.000049430928,0.00026515062,0.00031269438,0.00006163645,0.00015531063],"domain_scores_gemma":[0.9995905,0.000004211485,0.000105093895,0.00017231822,0.000098397875,0.000029445873],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011879702,0.00013425272,0.00015579627,0.000045586217,0.0000476468,0.000022782133,0.000068290195,0.00011688022,0.00005710389],"category_scores_gemma":[0.000027024651,0.00011184043,0.00003288921,0.00010200576,0.00012946782,0.000016732536,0.00003146422,0.000079892314,5.0809143e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000255073,0.00079749076,0.86198825,0.00004551059,0.000016099457,3.768934e-7,0.00057821523,3.709876e-7,0.13564177,9.641772e-7,0.00018637202,0.0004895278],"study_design_scores_gemma":[0.0018414889,0.0005280133,0.9503093,0.00006384231,0.0000072985595,0.000003985896,0.000043338816,0.000009710003,0.046454947,0.0000057720504,0.0006157213,0.000116597024],"about_ca_topic_score_codex":0.00023716364,"about_ca_topic_score_gemma":0.00035082866,"teacher_disagreement_score":0.08918682,"about_ca_system_score_codex":0.0000059820995,"about_ca_system_score_gemma":0.00001958798,"threshold_uncertainty_score":0.45607206},"labels":[],"label_agreement":null},{"id":"W2897574815","doi":"10.1186/s13007-018-0358-8","title":"A simple and inexpensive method for practical storage of field-sample proteins for subsequent MALDI-TOF MS analysis","year":2018,"lang":"en","type":"article","venue":"Plant Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Centre for International Agricultural Research; Agriculture and Agri-Food Canada; Ministry of Agriculture of the People's Republic of China; Department for International Development","keywords":"Sample preparation; Chromatography; Trifluoroacetic acid; Filter paper; Matrix-assisted laser desorption/ionization; Chemistry; Mass spectrometry; Matrix (chemical analysis); Desorption; Adsorption","score_opus":0.06305173524644658,"score_gpt":0.4305345837005609,"score_spread":0.36748284845411433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897574815","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.15580241,0.000026503783,0.8430106,0.00020951706,0.0000685978,0.00052462413,0.00032778922,0.000007082194,0.000022842132],"genre_scores_gemma":[0.15860084,0.0000056350095,0.8405106,0.0001427224,0.00015225669,0.00010740254,0.00041813223,0.000009330791,0.00005309932],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988923,0.00027869613,0.0002770776,0.00033774503,0.000054258366,0.00015990983],"domain_scores_gemma":[0.99816287,0.0010510873,0.00016879204,0.00027409036,0.00027951985,0.00006364303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014996583,0.00010078078,0.00025353258,0.000060056784,0.000078654804,0.000025428546,0.000077231845,0.000118556396,0.000035041954],"category_scores_gemma":[0.006269718,0.00009231888,0.0001206844,0.00010674287,0.000048184273,0.0000052351825,0.00005712032,0.00003955331,1.9708591e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032226642,0.000044881846,0.0010228143,0.00006153268,0.00021987334,1.9977249e-7,0.0001210932,0.0000033658155,0.9934824,0.0006006879,0.00040362336,0.0037172595],"study_design_scores_gemma":[0.0004133083,0.00066659146,0.0020453727,0.0000054432307,0.0003034883,0.0000067911187,0.0001013691,0.010731839,0.96309894,0.001316789,0.021156527,0.00015354552],"about_ca_topic_score_codex":0.00023299479,"about_ca_topic_score_gemma":0.00036352986,"teacher_disagreement_score":0.030383466,"about_ca_system_score_codex":0.000006973549,"about_ca_system_score_gemma":0.000061178805,"threshold_uncertainty_score":0.75058913},"labels":[],"label_agreement":null},{"id":"W2903924351","doi":"10.4102/ajlm.v7i2.761","title":"Antimicrobial resistance surveillance with whole genome sequencing in Africa: It’s (about) time","year":2018,"lang":"en","type":"article","venue":"African Journal of Laboratory Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research; University of Toronto","funders":"","keywords":"Whole genome sequencing; Antibiotic resistance; Public health; Medicine; Antimicrobial; Family medicine; Genome; Biology; Pathology; Microbiology; Genetics; Gene","score_opus":0.015329700578767173,"score_gpt":0.2411488617146615,"score_spread":0.22581916113589431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2903924351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956819,0.0004623069,0.00021225677,0.0017805528,0.00018469298,0.00008248561,0.000027004598,0.000006430681,0.0015623844],"genre_scores_gemma":[0.9972664,0.00003135367,0.0008801397,0.00035168833,0.0008575236,0.0000011384507,0.000014425651,0.000017330354,0.0005799608],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986963,0.00018205124,0.00049990223,0.00021562692,0.00018527693,0.00022082441],"domain_scores_gemma":[0.9983643,0.00003064763,0.00040553132,0.00026835164,0.00081765896,0.0001134839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012754906,0.00012958575,0.00028060208,0.00010477294,0.00006349038,0.00001856231,0.00023561,0.0000649129,0.00006660476],"category_scores_gemma":[0.0005491054,0.00010100561,0.000025929427,0.00044824806,0.0003472372,0.000014083194,0.000027169495,0.00013841783,0.000010312031],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023734545,0.000019300798,0.0030110872,0.000016215336,0.000021334596,0.00003111097,0.0007298416,0.000006117963,0.9901656,0.0000054481848,0.0057217944,0.000034793527],"study_design_scores_gemma":[0.009301694,0.004938342,0.13892749,0.0017250718,0.00011838646,0.0003504861,0.0062066074,0.00004946881,0.14369474,0.000076735305,0.693224,0.0013869832],"about_ca_topic_score_codex":0.000007300788,"about_ca_topic_score_gemma":0.00022588558,"teacher_disagreement_score":0.8464709,"about_ca_system_score_codex":0.00008641478,"about_ca_system_score_gemma":0.00042274618,"threshold_uncertainty_score":0.4118889},"labels":[],"label_agreement":null},{"id":"W2905186438","doi":"10.1373/jalm.2018.027128","title":"Pediatric Anaerobic Blood Culture Practices in Industrialized Countries","year":2018,"lang":"en","type":"article","venue":"The Journal of Applied Laboratory Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institutes of Health","keywords":"Developed country; Anaerobic exercise; Medicine; Environmental health; Physiology","score_opus":0.023130130599095498,"score_gpt":0.2989615236120265,"score_spread":0.27583139301293097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2905186438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997475,0.0008284053,0.00001644361,0.0006403283,0.00037568412,0.0001205825,0.000003486197,0.000004366781,0.00053564965],"genre_scores_gemma":[0.99507874,0.0007186208,0.00016777254,0.00056988857,0.003395212,0.0000017110308,0.0000066227626,0.000009375733,0.000052031148],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998964,0.00015516643,0.00045929072,0.000109563414,0.00018957554,0.00012236593],"domain_scores_gemma":[0.99826574,0.000057028603,0.00093746115,0.00022813662,0.00045094104,0.000060693037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022976226,0.00009997825,0.00018827515,0.00006909497,0.00007845153,0.00001653244,0.00025984235,0.0001196505,0.00008989549],"category_scores_gemma":[0.0010938271,0.00006040596,0.000017956114,0.00033944627,0.00020381229,0.000008812331,0.000032192824,0.00021993792,0.000005657082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006310227,0.00005753467,0.003007154,0.000015935182,0.00003926605,0.000002771256,0.0011359061,0.0000024289673,0.9843691,0.00013083332,0.010521626,0.00008640411],"study_design_scores_gemma":[0.018315908,0.004483211,0.044041228,0.00019092025,0.0014493356,0.00015034666,0.011766901,0.0000104783185,0.52132314,0.0005915665,0.39693505,0.00074193237],"about_ca_topic_score_codex":0.000011859392,"about_ca_topic_score_gemma":0.00005370892,"teacher_disagreement_score":0.46304598,"about_ca_system_score_codex":0.0000114204695,"about_ca_system_score_gemma":0.0002119673,"threshold_uncertainty_score":0.24632835},"labels":[],"label_agreement":null},{"id":"W2907490648","doi":"10.1016/j.diagmicrobio.2018.12.014","title":"CHROMagar™ orientation urine culture medium produces matrix-assisted laser desorption ionization–time-of-flight mass spectrometry spectra misidentified as Mycoplasma arginini and Mycoplasma alkalescens","year":2019,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Mass spectrometry; Mycoplasma; Urine; Ionization; Chromatography; Chemistry; Ion; Microbiology; Biology; Biochemistry","score_opus":0.0037682562433748786,"score_gpt":0.2224200933299043,"score_spread":0.21865183708652944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2907490648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997583,0.0007691023,0.0001454963,0.00012653849,0.0005018115,0.0005679522,0.0001239164,0.00004479062,0.00013742865],"genre_scores_gemma":[0.99566096,0.00054009556,0.00025354724,0.000115736824,0.00017403369,0.000024326655,0.00200579,0.00002219749,0.0012033002],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985127,0.00016693996,0.0003726351,0.00065044453,0.000064054606,0.0002332455],"domain_scores_gemma":[0.9989596,0.00013211723,0.00023495985,0.00031641842,0.00020058276,0.0001563242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019854093,0.00023627153,0.0002549299,0.00012016279,0.00014000417,0.000064802945,0.00009162886,0.00021128645,0.0003074235],"category_scores_gemma":[0.001257495,0.00022774875,0.00006788387,0.00020113154,0.00018411965,0.000026074755,0.00006772124,0.000113352566,0.00009697589],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014209532,0.00016501312,0.16857578,0.00014103434,0.00006825757,0.000005017877,0.00011766984,0.000010767297,0.82997924,0.0000725095,0.0006787426,0.000043879296],"study_design_scores_gemma":[0.0029328354,0.00081234373,0.33122626,0.00015388631,0.00033645393,0.00040306302,0.00016394572,0.0000688917,0.6607859,0.00036131332,0.0020908886,0.000664204],"about_ca_topic_score_codex":0.000012470226,"about_ca_topic_score_gemma":0.000024299698,"teacher_disagreement_score":0.16919333,"about_ca_system_score_codex":0.000024034693,"about_ca_system_score_gemma":0.000099225996,"threshold_uncertainty_score":0.92873245},"labels":[],"label_agreement":null},{"id":"W2909260534","doi":"10.1080/00275514.2018.1528129","title":"Rapid characterization of aquatic hyphomycetes by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry","year":2019,"lang":"en","type":"article","venue":"Mycologia","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Allison University","funders":"Fundação para a Ciência e a Tecnologia","keywords":"Biology; Internal transcribed spacer; Hyphomycetes; Mass spectrometry; Matrix-assisted laser desorption/ionization; Dendrogram; Botany; Polyphyly; Chromatography; Ribosomal RNA; Phylogenetic tree; Chemistry; Desorption; Genetics","score_opus":0.007897194662744305,"score_gpt":0.22361339529728447,"score_spread":0.21571620063454017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2909260534","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972849,0.00006704989,0.0018780772,0.00004212241,0.0001665326,0.00027992236,0.00004927395,0.000021060732,0.00021109282],"genre_scores_gemma":[0.9945348,0.000051417745,0.0017137092,0.000038532897,0.000044653312,0.000008573069,0.001664763,0.000014982049,0.0019286013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901074,0.00011458357,0.00037565664,0.00025777164,0.0001107399,0.00013048273],"domain_scores_gemma":[0.99918145,0.00003227682,0.0003155993,0.0003059585,0.00013258852,0.000032133128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025300938,0.00011035241,0.00019225027,0.00007802416,0.00003150633,0.000020010786,0.00014246031,0.00016323543,0.0006780921],"category_scores_gemma":[0.00021484077,0.00010926585,0.00006292163,0.00027466562,0.000043587785,0.0000108388695,0.000038229147,0.00004623664,0.00009087829],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047925518,0.00008705239,0.025434863,0.000048348942,0.000025042717,1.02365156e-7,0.00001702248,0.000002831876,0.97363347,0.000015617657,0.00024130965,0.00044641658],"study_design_scores_gemma":[0.0003497088,0.00021411962,0.10789308,0.000014679967,0.000019779933,0.000001773056,0.00001807086,0.0003547787,0.8904165,0.00001957448,0.0005838042,0.000114129056],"about_ca_topic_score_codex":0.000005339951,"about_ca_topic_score_gemma":9.632365e-7,"teacher_disagreement_score":0.08321697,"about_ca_system_score_codex":0.000020416346,"about_ca_system_score_gemma":0.000039662293,"threshold_uncertainty_score":0.7424633},"labels":[],"label_agreement":null},{"id":"W2909843219","doi":"10.1016/j.cimid.2019.01.008","title":"New sequence type ST3756 of Staphylococcus aureus subspecies anaerobius as the causative agent of abscessing lymphadenitis in sheep","year":2019,"lang":"en","type":"article","venue":"Comparative Immunology Microbiology and Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministerstvo Zemědělství; Ministerstvo Školství, Mládeže a Tělovýchovy; Canadian Centre for Applied Research in Cancer Control","keywords":"Staphylococcus aureus; Multilocus sequence typing; Biology; Subspecies; Microbiology; Flock; Antibiotics; Virology; Outbreak; Vaccination; Gene; Genetics; Genotype; Bacteria; Zoology","score_opus":0.01987309546184979,"score_gpt":0.2805497151329108,"score_spread":0.26067661967106104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2909843219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99368465,0.005229258,0.000028776449,0.00004566279,0.0002757893,0.0002831986,0.000048652175,0.000008906318,0.00039509323],"genre_scores_gemma":[0.9992474,0.0002875173,0.000026746518,0.00006221065,0.000024857622,0.000007311566,0.00012382462,0.0000061008336,0.0002140831],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988787,0.00031449273,0.00032139878,0.00029303934,0.000023494296,0.00016886476],"domain_scores_gemma":[0.9991928,0.00010045715,0.00023578548,0.0002688348,0.00017317866,0.000028993465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094300136,0.00015027792,0.00031811802,0.000075390104,0.00007382732,0.000011771657,0.00016202316,0.00011925106,0.00018575153],"category_scores_gemma":[0.00011700341,0.00012197165,0.00005756779,0.00015753279,0.0006240513,0.000011923124,0.00011845154,0.0000944197,0.000011228131],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015554232,0.00006895637,0.20566249,0.000014421132,0.000104782455,9.057309e-7,0.00044881995,0.00002466959,0.7928182,0.00032948406,0.00008783382,0.0002839143],"study_design_scores_gemma":[0.0012982991,0.0009732304,0.6845737,0.000055521858,0.00004531939,0.000045158755,0.0011190407,0.00000881346,0.3096424,0.0003903559,0.0016127329,0.00023538769],"about_ca_topic_score_codex":0.00024137244,"about_ca_topic_score_gemma":0.0003203655,"teacher_disagreement_score":0.48317575,"about_ca_system_score_codex":0.00002493936,"about_ca_system_score_gemma":0.00019338667,"threshold_uncertainty_score":0.49738595},"labels":[],"label_agreement":null},{"id":"W2915624484","doi":"10.1111/apm.12943","title":"Antimicrobial resistance, prevalence of resistance genes, and molecular characterization in intestinal <i>Bacteroides fragilis</i> group isolates","year":2019,"lang":"en","type":"article","venue":"Apmis","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Iran University of Medical Sciences; Canadian Food Inspection Agency","keywords":"Bacteroides fragilis; Microbiology; Biology; Clindamycin; Piperacillin; Antibiotic resistance; Antimicrobial; Metronidazole; Multiplex polymerase chain reaction; Antibiotics; Virology; Polymerase chain reaction; Gene; Bacteria; Genetics; Pseudomonas aeruginosa","score_opus":0.005242985969228121,"score_gpt":0.20938663472768493,"score_spread":0.2041436487584568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2915624484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99857014,0.00043453462,0.00036033476,0.00009286423,0.000083106555,0.00020583559,0.00004334017,0.000010268015,0.00019954915],"genre_scores_gemma":[0.9970321,0.00026080417,0.0012169341,0.00011487979,0.000030002546,0.0000071108184,0.000183858,0.000014495119,0.001139796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990494,0.00007379683,0.0003001985,0.00036979018,0.00006242862,0.0001443742],"domain_scores_gemma":[0.99941117,0.000017865164,0.00014585092,0.00030264084,0.00008863176,0.000033873053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020363017,0.000115125906,0.00014239535,0.000044162567,0.000025780937,0.000029436927,0.00013561107,0.000088041015,0.000022466513],"category_scores_gemma":[0.00011858122,0.00012720768,0.000032932694,0.00011358079,0.000067699,0.00001539035,0.00006948709,0.00006068463,0.0000035752491],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000092522445,0.000035570803,0.108699076,0.00031999953,0.0000052471005,8.0735606e-7,0.000045293342,4.632946e-7,0.8904329,0.00006217455,0.000038492057,0.00026745204],"study_design_scores_gemma":[0.00045905777,0.000049755912,0.31076476,0.0002335029,0.000010754245,0.0000042568677,0.000021330941,0.000023157882,0.6849682,0.00004527087,0.0032188562,0.0002011069],"about_ca_topic_score_codex":0.000012230177,"about_ca_topic_score_gemma":0.00008201981,"teacher_disagreement_score":0.2054647,"about_ca_system_score_codex":0.000009658736,"about_ca_system_score_gemma":0.00002395705,"threshold_uncertainty_score":0.51873785},"labels":[],"label_agreement":null},{"id":"W2916478543","doi":"10.1128/jcm.01294-17","title":"Answer to November 2018 Photo Quiz","year":2018,"lang":"en","type":"editorial","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Medicine","score_opus":0.03343369439118767,"score_gpt":0.3817873578633938,"score_spread":0.34835366347220614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916478543","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.148214,0.0001840677,0.00020468276,0.0003223269,0.85028315,0.00017558079,0.00023319805,0.0000072360144,0.00037575388],"genre_scores_gemma":[0.0059311343,0.00024210241,0.002488193,0.0011882047,0.984421,0.0000035028863,0.00048741495,0.000058922327,0.005179528],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99600184,0.00051112165,0.0024026735,0.0006113036,0.00012250367,0.00035054347],"domain_scores_gemma":[0.99530196,0.0005266438,0.0015921615,0.0006564184,0.0016385367,0.00028427667],"candidate_categories":["metaresearch","metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.003055393,0.00030641293,0.0010048036,0.00010564344,0.000060034457,0.00005508996,0.000806488,0.002175465,0.00045735322],"category_scores_gemma":[0.014397496,0.0002575265,0.0006396741,0.00009355478,0.0002868463,0.000005347613,0.00029858047,0.0009010858,0.0002785562],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044643972,0.000118534736,0.00018744027,0.000014181287,0.00012599662,0.000003253912,0.00000864254,3.007963e-7,0.33416182,4.985276e-7,0.66449434,0.0004385717],"study_design_scores_gemma":[0.00085603964,0.0018949714,0.00029598663,0.00007698311,0.00007435294,0.000043193286,0.000009174673,2.3059606e-7,0.0059754406,0.00001751652,0.9904862,0.00026991087],"about_ca_topic_score_codex":0.0000151415325,"about_ca_topic_score_gemma":0.0001324621,"teacher_disagreement_score":0.3281864,"about_ca_system_score_codex":0.00003274552,"about_ca_system_score_gemma":0.00077915215,"threshold_uncertainty_score":0.9999877},"labels":[],"label_agreement":null},{"id":"W2916938152","doi":"10.3389/fmicb.2019.00315","title":"Fungal Community Ecology Using MALDI-TOF MS Demands Curated Mass Spectral Databases","year":2019,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Fundação para a Ciência e a Tecnologia; Universidad de La Frontera; Conselho Nacional de Desenvolvimento Científico e Tecnológico; European Regional Development Fund; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Ecology; Database; Microbial ecology; Mass spectrometry; Biology; Computational biology; Computer science; Chemistry; Bacteria; Chromatography; Genetics","score_opus":0.02154462074774867,"score_gpt":0.26239799017907545,"score_spread":0.2408533694313268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916938152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99513716,0.00019959119,0.0019071826,0.000049534727,0.0020134808,0.00025422918,0.0001224859,0.000020966,0.00029536267],"genre_scores_gemma":[0.9863379,0.000037124122,0.011297479,0.00023911658,0.00011096805,0.0000058491974,0.001461475,0.000021232283,0.0004888665],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981971,0.000613856,0.00036406072,0.00040105399,0.000024858942,0.00039910164],"domain_scores_gemma":[0.9991412,0.000032722568,0.00013327843,0.00057521847,0.00006549881,0.000052037547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005123048,0.00018599875,0.00030673202,0.00010900623,0.00011295559,0.000020417368,0.00034129503,0.0002521854,0.00015330633],"category_scores_gemma":[0.00016500382,0.00019788518,0.000071306065,0.00013471952,0.00018151893,0.0000104124365,0.00017331458,0.00033479996,0.000029652125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000766489,0.000054382308,0.33358955,0.000016135238,0.000026120935,0.0000019967467,0.00002957328,0.00004275947,0.6638567,0.00001292128,0.0022409814,0.000052260682],"study_design_scores_gemma":[0.0037464558,0.0007418709,0.22100867,0.00007237659,0.00007056714,0.00029020407,0.0014861542,0.0020884126,0.73264754,0.00030558286,0.036320187,0.001221992],"about_ca_topic_score_codex":0.00018071558,"about_ca_topic_score_gemma":0.00043350674,"teacher_disagreement_score":0.11258088,"about_ca_system_score_codex":0.00006765917,"about_ca_system_score_gemma":0.00009540519,"threshold_uncertainty_score":0.80695236},"labels":[],"label_agreement":null},{"id":"W2931405160","doi":"10.1007/978-1-4939-9199-0_10","title":"Mass Spectrometry to Study the Bacterial Proteome from a Single Colony","year":2019,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency","keywords":"Proteome; Bacteria; Mass spectrometry; Chromatography; Identification (biology); Tandem mass spectrometry; Microbiology; Biology; Streptococcus pneumoniae; Microbiological culture; Chemistry; Computational biology; Bioinformatics; Genetics","score_opus":0.028263836096238094,"score_gpt":0.3671494485538909,"score_spread":0.3388856124576528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2931405160","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.81357676,0.000046907968,0.18408614,0.00025462348,0.00059553975,0.0010925842,0.000014251371,0.000015206017,0.0003179685],"genre_scores_gemma":[0.6116773,0.0000013498654,0.38747683,0.00036818214,0.00013780306,0.0001054092,0.00006678078,0.000021873675,0.00014446356],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967327,0.0018316763,0.00036899676,0.0006841756,0.000075219825,0.0003072049],"domain_scores_gemma":[0.9988345,0.000100577505,0.00009982539,0.0008394921,0.000061780476,0.00006382328],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014351531,0.00018463511,0.00026695704,0.00008721169,0.000049092923,0.000052826254,0.00047495423,0.00018926949,0.00026398606],"category_scores_gemma":[0.000984561,0.0001501269,0.000082175546,0.0002909726,0.000056061337,0.0000026428706,0.0002617318,0.00016087363,0.000052331055],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012338278,0.00016766704,0.01378673,0.0000023581074,0.00005097857,0.0000029864495,0.000121344274,0.0000055353366,0.9835846,0.000052035473,0.000013944849,0.0020884778],"study_design_scores_gemma":[0.00081226457,0.001103478,0.020021657,0.000005016114,0.00001767304,0.0000033534889,0.00025431515,0.000021892056,0.9723323,0.0015049123,0.0036694908,0.00025366808],"about_ca_topic_score_codex":0.00013166494,"about_ca_topic_score_gemma":0.000069980684,"teacher_disagreement_score":0.2033907,"about_ca_system_score_codex":0.000033591972,"about_ca_system_score_gemma":0.000039592836,"threshold_uncertainty_score":0.6121997},"labels":[],"label_agreement":null},{"id":"W2943131533","doi":"10.1093/biomethods/bpz003","title":"A method for filamentous fungal growth and sample preparation aimed at more consistent MALDI-TOF MS spectra despite variations in growth rates and/or incubation times","year":2019,"lang":"en","type":"article","venue":"Biology Methods and Protocols","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Centre for International Agricultural Research; Agriculture and Agri-Food Canada; Ministry of Agriculture of the People's Republic of China; Department for International Development","keywords":"Agar; Chromatography; Agar plate; Bacterial growth; Species richness; Volume (thermodynamics); Chemistry; Phosphocholine; Mass spectrometry; Analytical Chemistry (journal); Biology; Biochemistry; Bacteria; Physics; Ecology","score_opus":0.04171539564933033,"score_gpt":0.4247432620409924,"score_spread":0.3830278663916621,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2943131533","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7433912,0.00013553767,0.21726625,0.000585279,0.000081759485,0.038238198,0.00016047322,0.00002896095,0.0001123618],"genre_scores_gemma":[0.21770439,0.000040151677,0.7621429,0.00021992896,0.00008686696,0.019173253,0.0003147761,0.000017981965,0.00029973566],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983779,0.00062220136,0.00032235627,0.00047666987,0.000031588286,0.00016927524],"domain_scores_gemma":[0.9989628,0.00057214446,0.00015746157,0.0001571271,0.00009394992,0.00005649276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013120556,0.00014439735,0.00023428495,0.00006020152,0.0001089981,0.000053810305,0.00005613372,0.00019665649,0.000038202805],"category_scores_gemma":[0.0011569568,0.00012061328,0.000033133223,0.00007093075,0.00007796622,0.000013405087,0.000088289016,0.000053892523,5.2023984e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006649041,0.000042686905,0.06522491,0.00014331397,0.000031536554,1.291833e-7,0.0002122675,7.354197e-7,0.92759156,0.0022814139,0.000028483973,0.0037780807],"study_design_scores_gemma":[0.005446992,0.0034096763,0.2864181,0.000099459736,0.000090491776,0.000065725246,0.00020270015,0.008061859,0.6599444,0.0286262,0.0068594576,0.0007749219],"about_ca_topic_score_codex":0.00008728229,"about_ca_topic_score_gemma":0.00010442196,"teacher_disagreement_score":0.5448767,"about_ca_system_score_codex":0.00001559718,"about_ca_system_score_gemma":0.00004671478,"threshold_uncertainty_score":0.49184668},"labels":[],"label_agreement":null},{"id":"W2943197596","doi":"10.1017/ice.2019.96","title":"Predictive utility of swab screening for extended-spectrum beta-lactamase-producing organisms in selection of empiric antibiotics for Gram-negative sterile-site infections: A retrospective cohort study","year":2019,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Antibiotics; Retrospective cohort study; Predictive value; Empiric therapy; Medicine; Cohort; Selection (genetic algorithm); Empiric treatment; Gram; Microbiology; Biology; Internal medicine; Bacteria; Computer science","score_opus":0.01911302085076577,"score_gpt":0.2998298578215775,"score_spread":0.28071683697081173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2943197596","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93437946,0.000041633735,0.061687242,0.00015937335,0.00038849344,0.003151551,0.00014284128,0.000024847699,0.000024547564],"genre_scores_gemma":[0.9988815,0.000022199474,0.000714578,0.000035218927,0.00012288489,0.00008652212,0.000093663846,0.000020598687,0.000022806065],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976941,0.00042535143,0.00082076987,0.00072166236,0.00006997585,0.00026814474],"domain_scores_gemma":[0.9980042,0.0005483594,0.00064097013,0.0002628297,0.0004929561,0.00005068398],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023059812,0.00020434032,0.00073726225,0.00015148477,0.000109371984,0.000011721465,0.00005977083,0.00022969696,0.000016477921],"category_scores_gemma":[0.0038969242,0.00020432139,0.00015733963,0.00021137482,0.00013635716,0.000030628416,0.00004513729,0.00014627502,5.248815e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058807473,0.0004728354,0.9546813,0.00008160701,0.00021372842,5.0902216e-8,0.00020193898,0.00022566902,0.042967472,0.00013619017,0.000021631617,0.00040952803],"study_design_scores_gemma":[0.0025317788,0.005555789,0.9759338,0.00002776645,0.000105939485,0.0000030522363,0.00015836788,0.0068349587,0.007944032,0.00070306554,0.000028061226,0.00017338984],"about_ca_topic_score_codex":0.0009824398,"about_ca_topic_score_gemma":0.0012220553,"teacher_disagreement_score":0.06450205,"about_ca_system_score_codex":0.000047061316,"about_ca_system_score_gemma":0.000058973637,"threshold_uncertainty_score":0.8331984},"labels":[],"label_agreement":null},{"id":"W2944450856","doi":"","title":"Confirmation of bacterial ring rot detection using realtime PCR with an internal reaction control","year":2007,"lang":"en","type":"article","venue":"Jukuri (Natural Resources Institute Finland (Luke))","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Eesti Teadusfondi","keywords":"Chemistry; Computer science","score_opus":0.01403177060183713,"score_gpt":0.2631466830850949,"score_spread":0.2491149124832578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2944450856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891778,0.00004326246,0.009213142,0.000020148644,0.0007587135,0.0002512895,0.0000146635,0.000028106886,0.00049284386],"genre_scores_gemma":[0.99768203,0.0000069690786,0.0011418954,0.000038316863,0.0007901147,0.0000038393505,0.00018266606,0.000017391141,0.00013679688],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870896,0.00008457042,0.0004391974,0.00034952292,0.00018628509,0.00023146482],"domain_scores_gemma":[0.9990275,0.000022731512,0.00035769277,0.00029518068,0.00020285057,0.000094029645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053004763,0.00017870447,0.00019905849,0.000102821046,0.00017310056,0.000072279654,0.00015202515,0.00018837469,0.000015480096],"category_scores_gemma":[0.0001851927,0.00015414575,0.000066584704,0.00011011356,0.00010852402,0.000064641674,0.00003712897,0.00018546403,0.000003329419],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018283918,0.000041795814,0.0022824605,0.000030691863,0.00003929817,0.0000028725563,0.0001987155,0.00018472761,0.98639804,0.000015845373,0.000004574813,0.008972604],"study_design_scores_gemma":[0.0055743665,0.001294916,0.20395933,0.00021794614,0.00016668462,0.0003027329,0.00045697368,0.017638812,0.7219649,0.000031372696,0.047552817,0.0008391359],"about_ca_topic_score_codex":0.00050283544,"about_ca_topic_score_gemma":0.0015462505,"teacher_disagreement_score":0.26443312,"about_ca_system_score_codex":0.000055781657,"about_ca_system_score_gemma":0.000046758258,"threshold_uncertainty_score":0.6285881},"labels":[],"label_agreement":null},{"id":"W2944798812","doi":"10.1101/635227","title":"Fast and accurate bacterial species identification in biological samples using LC-MS/MS mass spectrometry and machine learning","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital de l'Enfant-Jésus; Université Laval","funders":"","keywords":"Mass spectrometry; Proteome; Identification (biology); Chromatography; Computational biology; Proteomics; Bacteria; Selected reaction monitoring; Chemistry; Biology; Bioinformatics; Tandem mass spectrometry; Biochemistry","score_opus":0.03685725526445197,"score_gpt":0.24606850649469109,"score_spread":0.20921125123023912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2944798812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99423784,0.0007025451,0.0035980442,0.000056224348,0.0006712396,0.0004632436,0.00020468073,0.00006151285,0.0000046714335],"genre_scores_gemma":[0.99392074,0.0008147859,0.0046407767,0.00002635976,0.0004829445,0.000022936463,0.00002029269,0.00005602053,0.0000151530285],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9974122,0.00029607664,0.00060542737,0.0011672515,0.00014559973,0.00037342153],"domain_scores_gemma":[0.99857,0.000048829304,0.00043988499,0.00063043495,0.00018136631,0.00012943704],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008357119,0.00040999972,0.00045666847,0.00021551621,0.00014692123,0.00047991448,0.00026782838,0.0005608618,0.00005108604],"category_scores_gemma":[0.00076508813,0.00043531565,0.00007380671,0.00021223855,0.0001773765,0.000024622048,0.0005518483,0.0004815405,0.0000069284974],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051228162,0.000035341633,0.13302538,0.00012776793,0.000035589957,0.0000027624983,0.0000082354945,0.000054611362,0.86660856,0.000041928517,0.0000048387124,0.0000037371647],"study_design_scores_gemma":[0.00045376166,0.000060035156,0.6490807,0.00010653462,0.00003113821,1.212481e-7,0.000011416378,0.0011141299,0.34787634,0.0000031817538,0.000746782,0.0005159035],"about_ca_topic_score_codex":0.000116816555,"about_ca_topic_score_gemma":0.000021444946,"teacher_disagreement_score":0.51873225,"about_ca_system_score_codex":0.00008519641,"about_ca_system_score_gemma":0.00014104742,"threshold_uncertainty_score":0.99980986},"labels":[],"label_agreement":null},{"id":"W2946195070","doi":"10.1016/j.clinms.2019.05.003","title":"MALDI-MS: Emerging roles in pathology and laboratory medicine","year":2019,"lang":"en","type":"review","venue":"Clinical mass spectrometry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia; Providence Health Care","funders":"","keywords":"Medical laboratory; Pathology; Tissue sample; Anatomical pathology; Computational biology; Medicine; Biology; Biomedical engineering; Immunohistochemistry","score_opus":0.06522680239543453,"score_gpt":0.4037308642337716,"score_spread":0.33850406183833703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2946195070","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0073004896,0.990592,0.000064650485,0.00014462078,0.000831218,0.00036357617,0.000034942434,0.00002160036,0.00064692553],"genre_scores_gemma":[0.0012102989,0.99615896,0.000730128,0.00016699101,0.0010072282,0.000020389889,0.00026045574,0.000049404603,0.00039616664],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99669665,0.00064189197,0.0012867014,0.00095459976,0.0001094825,0.0003106928],"domain_scores_gemma":[0.9983329,0.00031038135,0.000434893,0.0007280453,0.00006614886,0.00012762088],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001722215,0.00032805055,0.0014856502,0.00023551728,0.0000349024,0.000027068938,0.00031686274,0.0007759134,0.00018153436],"category_scores_gemma":[0.002687451,0.00028195442,0.00022321881,0.00037835602,0.00025798,0.0000043975265,0.00019782908,0.00058914983,0.000056843746],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056105207,0.00029666393,0.011359086,0.010052106,0.0002912457,0.00012608561,0.000035377052,2.0085878e-7,0.015348885,0.00061820965,0.002354454,0.95946157],"study_design_scores_gemma":[0.0005276161,0.00035532456,0.0024792464,0.0016795434,0.00020479657,0.000034066506,0.000039569066,0.0000025100178,0.000018531393,0.00012128761,0.994125,0.00041249755],"about_ca_topic_score_codex":0.000004801592,"about_ca_topic_score_gemma":0.000021809303,"teacher_disagreement_score":0.99177057,"about_ca_system_score_codex":0.000031559957,"about_ca_system_score_gemma":0.00016413371,"threshold_uncertainty_score":0.9999633},"labels":[],"label_agreement":null},{"id":"W2948829050","doi":"10.1111/ped.13906","title":"Skin preparation for prevention of peripheral blood culture contamination in children","year":2019,"lang":"en","type":"article","venue":"Pediatrics International","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Medicine; Contamination; Peripheral blood; Immunology","score_opus":0.006987027179037601,"score_gpt":0.28114918874685996,"score_spread":0.27416216156782236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2948829050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970404,0.000043317003,0.0017672776,0.000026983833,0.00027901022,0.0003720326,0.000042569944,0.000004918821,0.00042351856],"genre_scores_gemma":[0.9952288,0.000034695142,0.0013204901,0.000015759812,0.00029477142,0.000027465592,0.001523407,0.0000059955682,0.0015485844],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994107,0.000023848628,0.00022236924,0.00018223948,0.000099477315,0.00006135459],"domain_scores_gemma":[0.9995514,0.000008838427,0.00013509268,0.00009769944,0.00019407547,0.000012901429],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000179943,0.000054939468,0.00006175231,0.000054751174,0.000012911532,0.000018839331,0.00010728017,0.00007937836,0.00004609878],"category_scores_gemma":[0.00017677389,0.000060086553,0.00005453501,0.00005359955,0.000008279334,0.000011922409,0.000025203051,0.000031785257,0.0000022627],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010451108,0.00022062188,0.69666016,0.000023541563,0.00002629173,2.7815291e-8,0.00016815923,0.00014189725,0.29999125,0.0008778659,0.0003117885,0.0014738784],"study_design_scores_gemma":[0.0026005597,0.00044374057,0.93375826,0.000013315964,0.00003451557,0.0000060981984,0.00008007756,0.0014009505,0.059417214,0.0005140463,0.0015348098,0.00019640249],"about_ca_topic_score_codex":0.000011148932,"about_ca_topic_score_gemma":0.000034601097,"teacher_disagreement_score":0.24057405,"about_ca_system_score_codex":0.000017211949,"about_ca_system_score_gemma":0.000027151487,"threshold_uncertainty_score":0.24502584},"labels":[],"label_agreement":null},{"id":"W2949366622","doi":"10.1093/biomethods/bpz007","title":"MALDI-TOF MS-based analysis of dried seed proteins immobilized on filter paper","year":2019,"lang":"en","type":"article","venue":"Biology Methods and Protocols","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Centre for International Agricultural Research; Agriculture and Agri-Food Canada; Ministry of Agriculture of the People's Republic of China; Department for International Development","keywords":"Matrix-assisted laser desorption/ionization; Chromatography; Mass spectrometry; Chemistry; Sample preparation; Desorption","score_opus":0.03864662644329541,"score_gpt":0.4082785866551263,"score_spread":0.36963196021183087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949366622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9683526,0.000023140175,0.007718099,0.00013695781,0.00006475192,0.022865862,0.00005998783,0.000019398556,0.00075920747],"genre_scores_gemma":[0.85415685,0.0000037182385,0.12038887,0.0007425868,0.00008598926,0.023399998,0.0003958681,0.000026800504,0.0007993179],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981051,0.0008054839,0.00037238697,0.0004902643,0.000050255025,0.0001764712],"domain_scores_gemma":[0.99893194,0.00012484293,0.00020055624,0.00057089305,0.00011353157,0.00005824054],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012754382,0.00015256954,0.0003950294,0.00010724178,0.00004457489,0.000022481609,0.0001490897,0.00024860355,0.00044255418],"category_scores_gemma":[0.00037464284,0.00012410447,0.00016637765,0.00021253509,0.000110163855,0.0000035131704,0.00005953982,0.000080318205,0.000005118243],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043446492,0.0000858421,0.042073324,0.00004903561,0.00017186056,9.331833e-8,0.000017417453,0.00000924233,0.9530785,0.00029571424,0.000011531092,0.0037729924],"study_design_scores_gemma":[0.0014409538,0.0012774373,0.13291228,0.000031526684,0.00011359294,6.3470833e-7,0.00001784213,0.00054096355,0.83101255,0.00021613273,0.03218193,0.00025418296],"about_ca_topic_score_codex":0.000027685495,"about_ca_topic_score_gemma":0.000013338825,"teacher_disagreement_score":0.122065954,"about_ca_system_score_codex":0.000006285945,"about_ca_system_score_gemma":0.0000528958,"threshold_uncertainty_score":0.50608337},"labels":[],"label_agreement":null},{"id":"W2953695757","doi":"10.1111/avj.12811","title":"Veterinary antimicrobial stewardship in North America","year":2019,"lang":"en","type":"article","venue":"Australian Veterinary Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"U.S. Food and Drug Administration; Public Health Agency of Canada","keywords":"Antimicrobial stewardship; Stewardship (theology); Veterinary medicine; Antimicrobial; Geography; Medicine; Biology; Antibiotic resistance; Political science; Antibiotics; Microbiology","score_opus":0.03686819689202637,"score_gpt":0.2897120182215141,"score_spread":0.25284382132948774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953695757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99856395,0.00001725737,0.000016373515,0.00025098558,0.0006928451,0.00014170965,0.000016607139,0.00001216765,0.000288123],"genre_scores_gemma":[0.9968863,0.000039848845,0.0008027573,0.0001877734,0.00028971757,0.0000032708174,0.00009003338,0.000022091317,0.0016782058],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99868476,0.00016944636,0.00037828853,0.0003191882,0.00011046194,0.00033782734],"domain_scores_gemma":[0.9993345,0.000008990841,0.0001454029,0.0003281534,0.00005857572,0.0001243486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021950601,0.00016689347,0.00017613551,0.000088759356,0.000075205746,0.00010733441,0.00029000995,0.00010383047,0.00034682563],"category_scores_gemma":[0.000042732543,0.00017497862,0.000109310546,0.0001455462,0.000054393968,0.000021212178,0.00010789462,0.00025572506,0.00017096837],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023191418,0.0000863786,0.05634419,0.000027778811,0.000017232605,0.0000986123,0.00010178362,0.0000565982,0.9393394,9.5001064e-7,0.0014171244,0.002278022],"study_design_scores_gemma":[0.0019855502,0.004237867,0.78924704,0.00010277208,0.000015668686,0.004188202,0.00045430817,0.000031471394,0.011159233,0.000014675821,0.1878224,0.00074081606],"about_ca_topic_score_codex":0.000020680953,"about_ca_topic_score_gemma":0.000014917949,"teacher_disagreement_score":0.92818016,"about_ca_system_score_codex":0.000035465266,"about_ca_system_score_gemma":0.00006877309,"threshold_uncertainty_score":0.71354204},"labels":[],"label_agreement":null},{"id":"W2954347200","doi":"10.3390/horticulturae5030048","title":"MALDI-TOF MS-Based Analysis of Seed Proteins from Catalogue Varieties of Solanum lycopersicum/Lycopersicon esculentum","year":2019,"lang":"en","type":"article","venue":"Horticulturae","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Centre for International Agricultural Research; Agriculture and Agri-Food Canada; Ministry of Agriculture of the People's Republic of China; Department for International Development","keywords":"Lycopersicon; Solanum; Horticulture; Botany; Biology","score_opus":0.007933431108119492,"score_gpt":0.21781420346652405,"score_spread":0.20988077235840455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2954347200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99835914,0.00011879013,0.00022188938,0.00006832768,0.00012428737,0.0003330252,0.00028151387,0.000014386484,0.00047864954],"genre_scores_gemma":[0.9955867,0.0000064788414,0.0005372733,0.000046119818,0.000041580315,0.000014123777,0.0033365807,0.000011092587,0.00042006487],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998769,0.00008097788,0.00042810987,0.00038459984,0.00017409904,0.00016324692],"domain_scores_gemma":[0.99883205,0.000024210112,0.0002467462,0.0005553406,0.00027907104,0.000062592815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015694676,0.00015444068,0.0003537871,0.00007307151,0.000037203074,0.000027649601,0.00021857928,0.00014797362,0.000273782],"category_scores_gemma":[0.00014849323,0.00012856408,0.00026681533,0.00029330052,0.000099196746,0.000009658612,0.000069422866,0.00006380413,0.00002157792],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008855233,0.000118149146,0.03524771,0.000042646476,0.00048419065,3.1380452e-7,0.0002654722,0.00025190806,0.9632656,0.000029372655,0.00014375303,0.00006233739],"study_design_scores_gemma":[0.00046209342,0.00016381707,0.24384344,0.000021368172,0.0003821202,3.2887382e-7,0.0008247179,0.0009042958,0.7525674,0.000005509861,0.0006360828,0.00018883869],"about_ca_topic_score_codex":0.0011687028,"about_ca_topic_score_gemma":0.00046369588,"teacher_disagreement_score":0.2106982,"about_ca_system_score_codex":0.000016641936,"about_ca_system_score_gemma":0.00007742728,"threshold_uncertainty_score":0.52426904},"labels":[],"label_agreement":null},{"id":"W2960503552","doi":"10.15789/2220-7619-2019-2-385-392","title":"Coherent fluctuation nephelometry in clinical microbiology","year":2019,"lang":"en","type":"article","venue":"Russian Journal of Infection and Immunity","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sciencetech (Canada)","funders":"","keywords":"Urine; Nephelometry; Spectrum analyzer; Bacteriuria; Chromatography; Urinalysis; Clinical microbiology; Isolation (microbiology); Microbiology; Chromogenic; Antibiotics; Chemistry; Biology; Computer science; Immunology; Biochemistry","score_opus":0.015718173691269904,"score_gpt":0.29512588709101256,"score_spread":0.2794077133997427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2960503552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99862623,0.000095835196,0.00022995056,0.0000803889,0.00057939754,0.00006647863,0.0000010874236,0.0000022965064,0.0003183068],"genre_scores_gemma":[0.99937266,0.00020261701,0.00014929919,0.00008612196,0.00009644179,4.2963944e-7,0.000013470452,0.0000040310574,0.0000749158],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99912304,0.00026852946,0.00042930385,0.000085742824,0.000023451117,0.000069946575],"domain_scores_gemma":[0.99952745,0.0000215505,0.0002272594,0.000118685115,0.000065173816,0.000039859337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00089956686,0.000056294877,0.00012956987,0.00008056537,0.00003110012,0.000020951753,0.00004665775,0.00010641325,0.000093288014],"category_scores_gemma":[0.00024345469,0.000049770955,0.00005573948,0.00007906859,0.00003604167,0.0000097994325,0.000030709303,0.00019143343,0.000009993687],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008951037,0.00007974627,0.37572944,0.000009711567,0.000015712008,2.1874335e-7,0.000040778752,0.0000037077345,0.6173873,0.000030899126,0.00004559,0.0065673958],"study_design_scores_gemma":[0.00068663905,0.00040527832,0.9885577,0.000022370352,0.00000524394,0.000073832336,0.00005951793,0.000015057736,0.0066380156,0.000043243235,0.003433721,0.000059355036],"about_ca_topic_score_codex":0.00002241338,"about_ca_topic_score_gemma":0.00003793667,"teacher_disagreement_score":0.61282825,"about_ca_system_score_codex":0.000013004636,"about_ca_system_score_gemma":0.000044565488,"threshold_uncertainty_score":0.20296006},"labels":[],"label_agreement":null},{"id":"W2962989643","doi":"10.1371/journal.pone.0219961","title":"Rapid metagenomics analysis of EMS vehicles for monitoring pathogen load using nanopore DNA sequencing","year":2019,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"Alberta Innovates; Alberta Innovates - Technology Futures","keywords":"Metagenomics; Nanopore sequencing; Minion; Outbreak; Microbiome; DNA sequencing; Medicine; Biology; Bioinformatics; Virology; Genetics","score_opus":0.08555686307278411,"score_gpt":0.2669265223498821,"score_spread":0.18136965927709803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2962989643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990966,0.0002530228,0.00022119345,0.000009572886,0.000064069514,0.00023426025,0.0000665135,0.00001019891,0.000044592074],"genre_scores_gemma":[0.99107814,0.000038104805,0.008455625,0.000012594268,0.00011278536,0.000007923514,0.00013857194,0.000016058151,0.00014017978],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991486,0.000036062716,0.00027649157,0.00027510503,0.00012145818,0.00014228861],"domain_scores_gemma":[0.99917054,0.00002308974,0.00016593334,0.000352785,0.00024935225,0.000038293558],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033808957,0.00009127533,0.0002624988,0.00006551514,0.000049245165,0.000025059742,0.00012353626,0.00008667937,0.000017152008],"category_scores_gemma":[0.00018251177,0.00009912277,0.00014220783,0.00016538802,0.000021333019,0.0000057221846,0.000050964423,0.000032925815,0.000001978842],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002437176,0.00008207398,0.037600696,0.00007767723,0.0008921727,1.12326916e-7,0.00010610768,0.00012390822,0.96076876,0.0000047561343,8.585076e-7,0.0003185329],"study_design_scores_gemma":[0.00017631179,0.000053940275,0.0056721647,0.000027939106,0.0007949681,1.7344861e-7,0.00017202424,0.004011327,0.98892736,0.000008172466,0.000041361585,0.00011424769],"about_ca_topic_score_codex":0.000033675213,"about_ca_topic_score_gemma":0.000010959367,"teacher_disagreement_score":0.03192853,"about_ca_system_score_codex":0.000050519982,"about_ca_system_score_gemma":0.00008484309,"threshold_uncertainty_score":0.40421093},"labels":[],"label_agreement":null},{"id":"W2963536581","doi":"10.20944/preprints201907.0222.v1","title":"Pathogen Taxonomy Updates at the Comprehensive Antibiotic Resistance Database: Implications for Molecular Epidemiology","year":2019,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Michael G. DeGroote Institute for Infectious Disease Research, McMaster University; Cisco Systems Canada; McMaster University; Cisco Systems","keywords":"Molecular epidemiology; Epidemiology; Antibiotic resistance; Biology; Genomics; Computational biology; Genome; Genetics; Gene; Antibiotics; Medicine; Genotype; Pathology","score_opus":0.2072414544822521,"score_gpt":0.38030487943886776,"score_spread":0.17306342495661567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2963536581","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9837257,0.0016645857,0.0053837923,0.0029897871,0.0006170424,0.0028943855,0.0016054336,0.00004465536,0.0010745876],"genre_scores_gemma":[0.9817261,0.0003556392,0.0027775138,0.0009854801,0.00024415297,0.0006838751,0.009264753,0.000060931314,0.0039015738],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99663305,0.0005089768,0.0007398494,0.0016042349,0.00008050302,0.00043338537],"domain_scores_gemma":[0.9949574,0.00037271663,0.00064199814,0.0034913095,0.00042650147,0.00011007155],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010259503,0.00037490422,0.00048793375,0.000046838195,0.00026224114,0.000025730915,0.0010006315,0.00043410456,0.00012772792],"category_scores_gemma":[0.0021211407,0.0003415131,0.0003361416,0.00007408232,0.00025572957,0.000005846828,0.0027045307,0.00033136006,0.00031138162],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000679361,0.000046887526,0.23955318,0.00021296268,0.00012456962,2.8645192e-7,0.000015924785,0.00030658586,0.75712055,0.00051140843,0.0019561786,0.00008353711],"study_design_scores_gemma":[0.00044365457,0.000024173834,0.506921,0.00010681322,0.00014381483,0.000009144083,0.000046159366,0.00007636969,0.19494012,0.00096203084,0.29571024,0.0006165092],"about_ca_topic_score_codex":0.00004503028,"about_ca_topic_score_gemma":0.00011826003,"teacher_disagreement_score":0.5621804,"about_ca_system_score_codex":0.00008306982,"about_ca_system_score_gemma":0.00019932688,"threshold_uncertainty_score":0.9999037},"labels":[],"label_agreement":null},{"id":"W2964357621","doi":"10.1117/12.2532080","title":"Front Matter: Volume 10875","year":2019,"lang":"en","type":"paratext","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Pacific Northwest National Laboratory; National Cheng Kung University; Université de Fribourg; Massachusetts Institute of Technology; Medizinische Universität Wien; Simon Fraser University; Universität Wien; University of Arizona; Albert-Ludwigs-Universität Freiburg; University of Illinois at Urbana-Champaign; University of Utah; Vanderbilt University","keywords":"Gold standard (test); Path (computing); Consistency (knowledge bases); Multiplexing; Partition (number theory); Analyte; Volume (thermodynamics); Laser; Computer science; Materials science; Biomedical engineering; Optics; Physics; Chromatography; Mathematics; Artificial intelligence; Chemistry; Engineering; Statistics; Telecommunications","score_opus":0.01190948987344678,"score_gpt":0.2536426521329969,"score_spread":0.24173316225955013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2964357621","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.031511102,0.00084438553,0.0023095221,0.00040583804,0.008012274,0.00055719307,0.00026269327,0.00002700705,0.95607],"genre_scores_gemma":[0.028735455,0.00009010112,0.00042019156,0.00079729577,0.0008626426,0.00001804243,0.0040137414,0.00004784218,0.9650147],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986821,0.000065324646,0.00030844143,0.00060816127,0.00010209088,0.00023391441],"domain_scores_gemma":[0.99884576,0.0000056168983,0.00014136749,0.000821417,0.000114656,0.00007117847],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001245339,0.00023846778,0.00024966084,0.000039796483,0.000049118258,0.00010611574,0.00031648594,0.00047279542,0.103475645],"category_scores_gemma":[0.00003734887,0.00023203462,0.00015168113,0.00002679565,0.000037835558,0.0000019092574,0.00017525922,0.00014291886,0.3371059],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010923483,0.000022731081,0.00058213726,0.00005996917,0.000028926013,1.4480948e-7,0.0000065750114,0.00000534329,0.1444066,0.0000015532532,0.8545903,0.00028479664],"study_design_scores_gemma":[0.00014209563,0.000048200676,0.0015064619,0.000020051348,0.000011673184,0.0000039287975,0.000014841871,0.000018693429,0.0076953066,0.0000021486226,0.99022686,0.00030971743],"about_ca_topic_score_codex":0.00010234213,"about_ca_topic_score_gemma":0.000036587116,"teacher_disagreement_score":0.23363025,"about_ca_system_score_codex":0.000020592008,"about_ca_system_score_gemma":0.00012002588,"threshold_uncertainty_score":0.9462098},"labels":[],"label_agreement":null},{"id":"W2966422660","doi":"10.3390/microorganisms7080235","title":"Spectral Grouping of Nominally Aspergillus versicolor Microbial-Collection Deposits by MALDI-TOF MS","year":2019,"lang":"en","type":"article","venue":"Microorganisms","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Centre for International Agricultural Research; Agriculture and Agri-Food Canada; Ministry of Agriculture of the People's Republic of China; Department for International Development","keywords":"Matrix-assisted laser desorption/ionization; Food spoilage; Mass spectrometry; Aspergillus; Environmental science; Biology; Botany; Chromatography; Chemistry; Desorption; Bacteria; Paleontology","score_opus":0.004671011022738518,"score_gpt":0.19596606358646795,"score_spread":0.19129505256372945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966422660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979793,0.00009834819,0.00042403105,0.00010708489,0.0004245955,0.00024395032,0.000020769021,0.000019704545,0.00068224204],"genre_scores_gemma":[0.99501586,0.000012711162,0.0014086069,0.00013761259,0.000092177,0.000002778084,0.00018356851,0.000026214491,0.0031204738],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903315,0.000049535854,0.0002733449,0.00036609996,0.00007169005,0.00020618514],"domain_scores_gemma":[0.99942684,0.000008934516,0.00013354367,0.00028894548,0.00009052982,0.000051220042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014273766,0.00013867697,0.00016593839,0.000040250296,0.000078400706,0.000041590516,0.00018361035,0.0001489832,0.00023900514],"category_scores_gemma":[0.000037674876,0.00015579627,0.00008824274,0.00012427942,0.000044946442,0.000007985977,0.0000798654,0.00007392773,0.00008428052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007233591,0.000077955505,0.0048906715,0.00003090367,0.00003139403,5.501407e-7,0.00009711355,0.0000034757495,0.9924891,0.000015691045,0.002115498,0.00017530937],"study_design_scores_gemma":[0.0005512128,0.00022043509,0.014810865,0.000013402221,0.000018446914,0.000022667155,0.00006311181,0.000009917948,0.98075956,0.000007162069,0.0033532747,0.00016996141],"about_ca_topic_score_codex":0.000102938146,"about_ca_topic_score_gemma":0.00012019437,"teacher_disagreement_score":0.011729558,"about_ca_system_score_codex":0.000049462134,"about_ca_system_score_gemma":0.00006266076,"threshold_uncertainty_score":0.63531876},"labels":[],"label_agreement":null},{"id":"W2968364773","doi":"10.1136/sextrans-2019-sti.71","title":"S15.3 Reducing the global burden of infectious diseases through precision infection management (PIM)","year":2019,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Workflow; Informatics; Medicine; Psychological intervention; Omics; Clinical microbiology; Health informatics tools; Health informatics; Data science; Bioinformatics; Computer science; Public health; Biology; Database; Microbiology; Pathology","score_opus":0.009616489974619495,"score_gpt":0.26789022582897537,"score_spread":0.25827373585435587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2968364773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98156136,0.00006127666,0.0014230032,0.00009310756,0.00038664334,0.00030094065,0.0000063836706,0.000025540023,0.01614173],"genre_scores_gemma":[0.9983626,0.00007853815,0.00020578902,0.000054109852,0.00011168121,0.000009800797,0.000044883636,0.0000058007295,0.0011267827],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993214,0.000059575275,0.00018823019,0.000236106,0.000096299365,0.0000984124],"domain_scores_gemma":[0.9994103,0.000011483224,0.00008399825,0.0003993125,0.000073313284,0.000021624057],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012652035,0.00007784707,0.00007936688,0.000010984629,0.000058857546,0.000034394718,0.000100852325,0.00005191565,0.00011916473],"category_scores_gemma":[0.00007288129,0.000057221398,0.00006994182,0.00010942178,0.000032195534,0.0000073288043,0.00012394931,0.000028423807,0.00003420352],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014935598,0.00027243324,0.35031995,0.00022270111,0.00020538639,6.36557e-7,0.000260401,0.0021300989,0.59845173,0.005080693,0.003059591,0.039846998],"study_design_scores_gemma":[0.002163491,0.0007035197,0.8283674,0.00016389736,0.00019222233,0.000027903472,0.0007543359,0.0010525724,0.10047896,0.0054162415,0.060027674,0.000651789],"about_ca_topic_score_codex":0.00042985994,"about_ca_topic_score_gemma":0.000040343068,"teacher_disagreement_score":0.4979728,"about_ca_system_score_codex":0.000022734717,"about_ca_system_score_gemma":0.000015909432,"threshold_uncertainty_score":0.2333421},"labels":[],"label_agreement":null},{"id":"W2973171406","doi":"10.1158/1055-9965.epi-19-0557","title":"Perspectives for Consideration in the Development of Microbial Cell Reference Materials","year":2019,"lang":"en","type":"review","venue":"Cancer Epidemiology Biomarkers & Prevention","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Cancer Institute; National Institutes of Health","keywords":"Development (topology); Biochemical engineering; Engineering; Mathematics","score_opus":0.22787029759547917,"score_gpt":0.44676501461214646,"score_spread":0.2188947170166673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2973171406","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0069451067,0.9891226,0.0011069982,0.00009172244,0.0005545507,0.0020143003,0.00011086909,0.000006195199,0.00004762941],"genre_scores_gemma":[0.0050255475,0.983278,0.0069031375,0.000050791718,0.00020708445,0.0008678818,0.0032875445,0.000029581273,0.000350452],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9965496,0.0014175108,0.0012015846,0.00057110697,0.000043379634,0.00021681467],"domain_scores_gemma":[0.9981734,0.0003381166,0.00097292213,0.00037159887,0.00012331364,0.00002063203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031296203,0.00023529174,0.00083965,0.0000848004,0.00006974327,0.000013676935,0.00026361292,0.0004624491,0.000043805074],"category_scores_gemma":[0.00065245334,0.00018190088,0.00022298557,0.00007843133,0.000100521174,0.000005848898,0.000057433466,0.000092634524,0.0000061655983],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044168148,0.0004930206,0.000644081,0.030569091,0.0009856507,3.6872393e-7,0.0013267973,0.0000037559485,0.2965835,0.00066316203,0.010516606,0.6577723],"study_design_scores_gemma":[0.00089665654,0.00020914157,0.0014338967,0.004417677,0.0005915476,0.000007300868,0.000608875,0.000003084775,0.007634128,0.0004387444,0.98311836,0.00064061466],"about_ca_topic_score_codex":0.00002229139,"about_ca_topic_score_gemma":0.00024374806,"teacher_disagreement_score":0.9726017,"about_ca_system_score_codex":0.00008479765,"about_ca_system_score_gemma":0.00061526644,"threshold_uncertainty_score":0.74177027},"labels":[],"label_agreement":null},{"id":"W2974219676","doi":"10.7326/m19-1696","title":"Blood Culture Results Before and After Antimicrobial Administration in Patients With Severe Manifestations of Sepsis","year":2019,"lang":"en","type":"article","venue":"Annals of Internal Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":222,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Vancouver General Hospital; McGill University Health Centre; Montreal Children's Hospital; London Health Sciences Centre; Lions Gate Hospital; St. Paul's Hospital; Centre for Advancing Health Outcomes; McGill University; Surrey Memorial Hospital; University of British Columbia","funders":"Vancouver Coastal Health; Fonds de Recherche du Québec - Santé; Vancouver Coastal Health Research Institute","keywords":"Medicine; Interquartile range; Blood culture; Sepsis; Antimicrobial; Internal medicine; Bacteremia; Blood pressure; Gastroenterology; Antibiotics; Microbiology","score_opus":0.010399767774236146,"score_gpt":0.27376595206154075,"score_spread":0.2633661842873046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2974219676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99911857,0.00001668412,0.000007385331,0.0003437204,0.000045386987,0.000120896926,0.000058173715,0.000001531144,0.00028763013],"genre_scores_gemma":[0.9992031,0.000013830297,0.00014196394,0.00018067301,0.000030563602,0.0000016213971,0.00016300575,0.000004350594,0.00026091974],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99943614,0.000021878677,0.00026305008,0.00014311374,0.00007518966,0.000060635935],"domain_scores_gemma":[0.99948555,0.000006875813,0.00014329744,0.00012380884,0.00021460708,0.000025863035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010420882,0.000062173385,0.00010824493,0.000035772096,0.00000627628,0.000003567109,0.000051039886,0.000047451445,0.000019013924],"category_scores_gemma":[0.00012324502,0.00004618965,0.00001610528,0.00004306731,0.00005536028,0.000006880731,0.000019720943,0.00003968218,5.8008294e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014041841,0.00014931697,0.8168564,0.00009702679,0.00004057547,0.0000023657597,0.00054244365,0.0000014185107,0.1800587,0.000010227596,0.0003259202,0.000511447],"study_design_scores_gemma":[0.0016635105,0.001889886,0.9416903,0.0003482255,0.00001493555,0.000009399525,0.00010016317,0.0000035165203,0.05409892,0.000013793653,0.00011026794,0.000057025998],"about_ca_topic_score_codex":0.00005320126,"about_ca_topic_score_gemma":0.00022484995,"teacher_disagreement_score":0.12595978,"about_ca_system_score_codex":0.000001258212,"about_ca_system_score_gemma":0.00001537252,"threshold_uncertainty_score":0.18835591},"labels":[],"label_agreement":null},{"id":"W2978053195","doi":"10.1074/mcp.tir119.001559","title":"Fast and Accurate Bacterial Species Identification in Urine Specimens Using LC-MS/MS Mass Spectrometry and Machine Learning*","year":2019,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; Hôpital de l'Enfant-Jésus; Université Laval","funders":"","keywords":"Urine; Mass spectrometry; Computational biology; Identification (biology); Chromatography; Proteomics; Selected reaction monitoring; Microbiological culture; Computer science; Bacteria; Biology; Chemistry; Tandem mass spectrometry; Biochemistry; Genetics","score_opus":0.013515380830179995,"score_gpt":0.2247012873885447,"score_spread":0.2111859065583647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2978053195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882171,0.00028401558,0.010300298,0.00009142346,0.00019638332,0.00068246055,0.00002151954,0.000021597065,0.00018516608],"genre_scores_gemma":[0.99143195,0.00010818523,0.0070515736,0.000029836563,0.0001460534,0.000012357,0.00036671764,0.000046185254,0.0008071152],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982392,0.00018676181,0.00043878905,0.0006826153,0.00015022475,0.00030236415],"domain_scores_gemma":[0.9991776,0.000011020012,0.00021259293,0.00042984093,0.0000732447,0.0000957025],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004894973,0.00024972687,0.00025953923,0.00013590748,0.00009236313,0.00022852738,0.00016175139,0.00018437688,0.00011485086],"category_scores_gemma":[0.0001612179,0.00027980062,0.00006257281,0.00017612593,0.000097302574,0.000022166485,0.0001972247,0.0002273522,0.000015587084],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007933625,0.000042169082,0.01430429,0.000057546997,0.000024217272,0.000008883763,0.00005834009,0.00012416892,0.9850836,0.00009894548,0.000002279436,0.00011626273],"study_design_scores_gemma":[0.0008016443,0.00011000453,0.020015163,0.0000221988,0.000020498715,0.000022064214,0.00005438106,0.0036043436,0.9742801,0.00009735028,0.00066237076,0.00030987078],"about_ca_topic_score_codex":0.00006921441,"about_ca_topic_score_gemma":0.000031831743,"teacher_disagreement_score":0.01080345,"about_ca_system_score_codex":0.000046848636,"about_ca_system_score_gemma":0.00004185945,"threshold_uncertainty_score":0.9999654},"labels":[],"label_agreement":null},{"id":"W2981800007","doi":"10.1093/ofid/ofz359.032","title":"847. The Effect of Antimicrobial Administration on Blood Culture Positivity in Patients with Severe Manifestations of Sepsis","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Vancouver General Hospital; Queen Elizabeth II Health Sciences Centre; Lions Gate Hospital; University of British Columbia; Surrey Memorial Hospital; McGill University Health Centre","funders":"National Institutes of Health; Moderna; Novavax","keywords":"Medicine; Antimicrobial; Sepsis; Blood culture; Internal medicine; Emergency department; Intensive care medicine; Antibiotics; Microbiology","score_opus":0.0028815805256126644,"score_gpt":0.23207480001214362,"score_spread":0.22919321948653096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981800007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99756837,0.0000038085227,0.0000036899285,0.00003677914,0.000048335354,0.00070601463,0.00017963734,0.000004119286,0.001449222],"genre_scores_gemma":[0.9993873,0.0000017436508,0.000010234713,0.000050524453,0.000007732564,0.00001683587,0.00041309002,0.0000074010254,0.00010513741],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994097,0.00011791174,0.00014514405,0.0001753083,0.00006987273,0.000082069884],"domain_scores_gemma":[0.99950045,0.000030104075,0.00013321868,0.00023561259,0.00007830805,0.000022320517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007786589,0.000084978936,0.000116587704,0.000020831636,0.00005289183,0.000036692876,0.00012112146,0.000044823926,0.000022680593],"category_scores_gemma":[0.00008639005,0.000058393423,0.000044245327,0.00007949101,0.00003598513,0.000014176627,0.00005733291,0.00003831415,0.000003027596],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039098028,0.00036540316,0.95430154,0.00004298129,0.00003585649,3.2251458e-7,0.000020264586,0.000042206266,0.044441838,0.000035931254,0.00011581489,0.0002068392],"study_design_scores_gemma":[0.0017497897,0.0024613424,0.9151934,0.000052988013,0.000057892,0.000003118533,0.000022974444,0.00000296741,0.080329664,0.000011671402,0.000022775464,0.000091423135],"about_ca_topic_score_codex":0.00007804013,"about_ca_topic_score_gemma":0.00025553457,"teacher_disagreement_score":0.03910817,"about_ca_system_score_codex":0.0000076768265,"about_ca_system_score_gemma":0.000043423915,"threshold_uncertainty_score":0.23812146},"labels":[],"label_agreement":null},{"id":"W2981914392","doi":"10.1093/ofid/ofz360.1855","title":"2175. Rapid Detection of Carbapenemase Producing Organisms Directly from Blood Cultures Positive for Gram-Negative Bacilli","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Bacilli; Medicine; Predictive value; Carbapenem; Blood culture; Gram; Microbiology; Internal medicine; Bacteria; Biology; Antibiotics","score_opus":0.006816400189936753,"score_gpt":0.2507604013328682,"score_spread":0.24394400114293144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981914392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962444,0.00015281737,0.00026603742,0.00005471473,0.00033549144,0.0014014101,0.0005432856,0.000030744348,0.000971141],"genre_scores_gemma":[0.9983102,0.00002184177,0.00024855183,0.0001248112,0.000103869024,0.00012255348,0.00069319527,0.00002883159,0.00034611026],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988015,0.00009983626,0.00026416703,0.00054552325,0.0000906774,0.00019827609],"domain_scores_gemma":[0.9989201,0.00006930019,0.00021880148,0.00039742817,0.00031024375,0.00008413579],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011693447,0.00017434236,0.00023607569,0.00003397011,0.00017778543,0.00013596394,0.00021091136,0.00009866614,0.0001293332],"category_scores_gemma":[0.00064715056,0.00016592118,0.00013169071,0.000110362336,0.00005433087,0.000029917985,0.0001720376,0.000049981318,0.000012141213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018415318,0.0002624383,0.026868284,0.000033014087,0.00016165234,2.9821348e-7,0.00014323737,0.000014193346,0.9699113,0.00003772272,0.00014448793,0.002239234],"study_design_scores_gemma":[0.001075549,0.0005899666,0.034344036,0.00003752052,0.00013972542,0.0000029361552,0.00037202332,0.000021077767,0.96221274,0.0006255097,0.0003489538,0.00022998947],"about_ca_topic_score_codex":0.0010376232,"about_ca_topic_score_gemma":0.0006131931,"teacher_disagreement_score":0.00769857,"about_ca_system_score_codex":0.00002367862,"about_ca_system_score_gemma":0.00008489469,"threshold_uncertainty_score":0.67660695},"labels":[],"label_agreement":null},{"id":"W2981925830","doi":"10.1093/ofid/ofz360.1829","title":"2149. Performance of a Gradient Diffusion Method (Etest®) on Mueller–Hinton Agar with Sheep Blood for Aerococcus urinae Antimicrobial Susceptibility Testing","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Institut universitaire de cardiologie et de pneumologie de Québec; Institut National de Santé Publique du Québec; Université Laval","funders":"","keywords":"Etest; Medicine; Broth microdilution; Microbiology; Ciprofloxacin; Chocolate agar; Agar dilution; Agar; Levofloxacin; Agar plate; Biology; Antimicrobial; Minimum inhibitory concentration; Antibiotics; Bacteria","score_opus":0.012091400320259554,"score_gpt":0.26419868752217907,"score_spread":0.2521072872019195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981925830","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99630773,0.00002001959,0.00024266896,0.00004922264,0.00019804917,0.0016846814,0.000101631056,0.00003755562,0.0013584596],"genre_scores_gemma":[0.9972793,0.000012989067,0.0018354108,0.00015514903,0.00005976095,0.000099251636,0.00023611766,0.000037135673,0.00028491544],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99838597,0.000103046026,0.0003653359,0.0006861998,0.00012518249,0.00033426998],"domain_scores_gemma":[0.9985437,0.000108870525,0.00028127356,0.0006492255,0.00029886115,0.00011810932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003097006,0.00025224537,0.00032398928,0.00005751934,0.00023359615,0.000116253774,0.00033768872,0.00010291278,0.000053838558],"category_scores_gemma":[0.00041548864,0.0002120778,0.00012975918,0.00016384404,0.00007511773,0.000027768556,0.00027517125,0.00008056797,0.000010652739],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005384449,0.0008268266,0.4968884,0.00019206839,0.000053063206,4.370918e-7,0.000028887442,0.00023149561,0.49815398,0.000053362168,0.00011651579,0.0029165235],"study_design_scores_gemma":[0.007518448,0.0120652085,0.4886051,0.00048996403,0.0003384679,0.000046840905,0.00016423895,0.0022072026,0.48524854,0.00015648987,0.0020506487,0.0011088602],"about_ca_topic_score_codex":0.00022002192,"about_ca_topic_score_gemma":0.00023732867,"teacher_disagreement_score":0.012905442,"about_ca_system_score_codex":0.000031676984,"about_ca_system_score_gemma":0.00010799529,"threshold_uncertainty_score":0.86482817},"labels":[],"label_agreement":null},{"id":"W2981985221","doi":"","title":"Use of standard diagnostic techniques to determine eradication of infection in experimental equine septic arthritis.","year":2019,"lang":"en","type":"article","venue":"PubMed","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Septic arthritis; Synovial fluid; Medicine; Horse; Microbiological culture; Escherichia coli; Brain heart infusion; Polymerase chain reaction; Arthritis; Saline; Internal medicine; Immunology; Surgery; Microbiology; Pathology; Osteoarthritis; Agar; Biology; Bacteria","score_opus":0.026286698911143363,"score_gpt":0.2611589346236055,"score_spread":0.23487223571246216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981985221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99891204,0.00005074195,0.00018620359,0.00002933136,0.00007436615,0.0006509123,0.000010788375,0.000009300947,0.00007629635],"genre_scores_gemma":[0.99891627,0.000040218583,0.00060464087,0.000031363375,0.000024389856,0.00027018235,0.000042422493,0.000007323613,0.00006317175],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994016,0.000037763133,0.00024356059,0.00015630988,0.00006505184,0.00009571427],"domain_scores_gemma":[0.99959797,0.00002831582,0.00008503132,0.00019227972,0.000062301646,0.000034079378],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018055383,0.000055079403,0.000108536595,0.00006609876,0.000007079092,0.000010436401,0.000041036998,0.000050790197,0.000015519361],"category_scores_gemma":[0.0005845241,0.00006074105,0.000029365761,0.000088555564,0.00002325003,0.000009189609,0.000039690563,0.000023744025,0.0000014044322],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000493021,0.000063592954,0.09980873,0.000017668048,0.000003891037,1.3290158e-7,0.000026790303,0.000006129875,0.8711819,0.000011588656,0.000040722043,0.028789537],"study_design_scores_gemma":[0.00013399517,0.00012686846,0.3495628,0.000016197911,0.0000016095222,9.5143145e-7,0.000004097369,0.0000056483477,0.6494788,0.0000049091273,0.00062130083,0.000042815394],"about_ca_topic_score_codex":0.00009389803,"about_ca_topic_score_gemma":0.000114395574,"teacher_disagreement_score":0.24975407,"about_ca_system_score_codex":0.000022192502,"about_ca_system_score_gemma":0.000012950832,"threshold_uncertainty_score":0.24769482},"labels":[],"label_agreement":null},{"id":"W2981990877","doi":"10.1093/ofid/ofz360.1843","title":"2163. Clinical Impact of Inter-site Blood Culture Transport in a Canadian Tertiary Care Center","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Medicine; Interquartile range; Bacteremia; Blood culture; Retrospective cohort study; Tertiary care; Blood sampling; Cohort; Internal medicine; Antibiotics; Emergency medicine; Microbiology; Biology","score_opus":0.0076117035383776845,"score_gpt":0.3048942334815685,"score_spread":0.2972825299431908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981990877","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954725,0.00011342095,0.0000025128595,0.000033090328,0.00017962776,0.00047641082,0.00042705832,0.000008298721,0.0032871133],"genre_scores_gemma":[0.998325,0.000024744933,0.000010983605,0.0002126281,0.000037703896,0.00001725939,0.0011010426,0.00001569548,0.00025495127],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989557,0.00007751268,0.00033203143,0.00033277014,0.000046906436,0.0002550421],"domain_scores_gemma":[0.99922264,0.0000069339108,0.000087482746,0.0003655596,0.00009984667,0.00021753243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010357238,0.00012873522,0.00019859646,0.000054908236,0.00004028361,0.000048823487,0.00023780792,0.00012587548,0.00023415123],"category_scores_gemma":[0.00007827269,0.00011479604,0.00022093099,0.00008115363,0.000040058454,0.00001764757,0.000082353996,0.00008316359,0.000022520006],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047176734,0.00023640507,0.98517,0.000028652657,0.000058322796,0.0000033345984,0.000106342704,0.0000071965783,0.013251428,0.0000073324973,0.00048179014,0.000601985],"study_design_scores_gemma":[0.0010548347,0.00031526852,0.99560076,0.00004943368,0.000030645115,0.0000070784276,0.00012821006,0.0000068142913,0.00076309324,0.000014314798,0.0018757667,0.0001537741],"about_ca_topic_score_codex":0.08626388,"about_ca_topic_score_gemma":0.360221,"teacher_disagreement_score":0.27395713,"about_ca_system_score_codex":0.000045848305,"about_ca_system_score_gemma":0.00036329322,"threshold_uncertainty_score":0.9198208},"labels":[],"label_agreement":null},{"id":"W2982087060","doi":"10.1093/ofid/ofz360.235","title":"160. Could Reducing Time to Bacterial Identification From Positive Blood Cultures Improve Outcomes in Bacteremic Patients?","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Michael's Hospital; University of Toronto","funders":"","keywords":"Blood culture; Medicine; Antimicrobial stewardship; Antibiotics; Sepsis; Identification (biology); Specialty; Bacteremia; Intensive care medicine; Antibiotic Stewardship; Clinical microbiology; Septic shock; Emergency medicine; Internal medicine; Microbiology; Family medicine; Antibiotic resistance; Biology","score_opus":0.00396726262451792,"score_gpt":0.2492220077724444,"score_spread":0.2452547451479265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982087060","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958739,0.000010856198,0.000008501071,0.00015700678,0.00056072907,0.0011844626,0.00078141066,0.000029468527,0.0013936481],"genre_scores_gemma":[0.99356914,0.0000036830868,0.000048153735,0.00035983243,0.000091663154,0.00008889426,0.0030138055,0.000028597657,0.0027962376],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984606,0.00011353693,0.00039592685,0.0006516139,0.000119229946,0.0002590963],"domain_scores_gemma":[0.998986,0.00003357955,0.00018141924,0.00050860125,0.00016246129,0.00012794767],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011137593,0.00020336725,0.0002539131,0.000062806044,0.000107902284,0.0004173923,0.0003528622,0.00012593139,0.00094760396],"category_scores_gemma":[0.00039262258,0.00020106445,0.0000953129,0.00010669924,0.000024982826,0.00005486747,0.00035301747,0.00007572736,0.0004944021],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010197295,0.0003630957,0.36204538,0.00000564345,0.000041673313,3.1604793e-7,0.000050741368,0.000007779326,0.635819,0.000007112203,0.0006235872,0.0009336635],"study_design_scores_gemma":[0.0016703503,0.00029171543,0.93539536,0.00004082873,0.0000572649,7.5283833e-7,0.00006281146,0.000016517084,0.061179895,0.00010603701,0.0008266173,0.00035187122],"about_ca_topic_score_codex":0.0008444404,"about_ca_topic_score_gemma":0.0002447457,"teacher_disagreement_score":0.57463914,"about_ca_system_score_codex":0.000056948942,"about_ca_system_score_gemma":0.00007000369,"threshold_uncertainty_score":0.99996567},"labels":[],"label_agreement":null},{"id":"W2982669619","doi":"10.3138/jammi.2018-0044","title":"Clinical impact of cerebrospinal fluid Gram stain and culture testing: A retrospective cohort study","year":2019,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Gram staining; Stain; Antibiotics; Medicine; Clinical microbiology; Microbiological culture; Cytochemistry; Pathology; Internal medicine; Staining; Microbiology; Biology; Bacteria","score_opus":0.005591367874281297,"score_gpt":0.2720338191564758,"score_spread":0.2664424512821945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982669619","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990058,0.0001225751,0.000004395114,0.00024851144,0.00035905885,0.00018695582,0.00004358667,0.0000012676178,0.000027853335],"genre_scores_gemma":[0.9996247,0.000050375984,0.00000879841,0.00010730515,0.00009713061,8.8957137e-7,0.000008444957,0.00000378407,0.00009851733],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99874115,0.00037875844,0.00048382976,0.00013477985,0.00016661818,0.00009484169],"domain_scores_gemma":[0.99840146,0.00009946992,0.0007611507,0.00012243429,0.00048598874,0.00012947463],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014309203,0.000077367986,0.000279988,0.000018934186,0.00005055469,0.000008159156,0.00012413223,0.00014363375,0.000024373494],"category_scores_gemma":[0.005697801,0.000051354982,0.00010358933,0.00007351991,0.000083101135,0.0000053148256,0.00007513334,0.00020458287,8.291651e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007703263,0.00014426232,0.95372665,0.000014506439,0.0002568311,7.523343e-7,0.000021230877,0.0000033262388,0.04337744,0.0000062908434,0.0022524889,0.00011917822],"study_design_scores_gemma":[0.00090587616,0.00076756283,0.9976079,0.000027839536,0.00007976014,0.000019696388,0.00004400075,0.000011684543,0.00019859865,0.000042519616,0.00024385175,0.00005069554],"about_ca_topic_score_codex":0.007203029,"about_ca_topic_score_gemma":0.012585871,"teacher_disagreement_score":0.043881256,"about_ca_system_score_codex":0.00012809275,"about_ca_system_score_gemma":0.001015136,"threshold_uncertainty_score":0.99940807},"labels":[],"label_agreement":null},{"id":"W2986315372","doi":"10.1016/j.ijmm.2019.151376","title":"Untargeted accurate identification of highly pathogenic bacteria directly from blood culture flasks","year":2019,"lang":"en","type":"article","venue":"International Journal of Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Direction Générale de l’Armement; Ministry of Defence; Ministerie van Defensie; Totalförsvarets Forskningsinstitut; Ontario Ministry of Research, Innovation and Science; Fellowships Fund Incorporated","keywords":"Laboratory flask; Francisella tularensis; Biology; Brucella; Microbiology; Brucella melitensis; Bacteria; Yersinia pestis; Pathogenic bacteria; Brucellosis; Leptospira; Virology; Chemistry; Virulence; Serotype","score_opus":0.007604760074868126,"score_gpt":0.26555319925455745,"score_spread":0.25794843917968935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2986315372","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99574,0.00032764976,0.00035833893,0.00076470047,0.0025204725,0.000076225726,0.00017364898,0.0000053179742,0.000033647597],"genre_scores_gemma":[0.99752474,0.00026047102,0.0004716102,0.0002497307,0.0005778008,0.0000013977242,0.0006806167,0.000010648453,0.00022299241],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983527,0.00018531231,0.00087899336,0.00023113997,0.00022896325,0.00012285827],"domain_scores_gemma":[0.9982479,0.00005474609,0.00074695493,0.00019921575,0.00066318375,0.000087972934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006392271,0.00011630809,0.00023744979,0.00007723946,0.00001697693,0.000030326275,0.0007716114,0.00030865407,0.0006841604],"category_scores_gemma":[0.00082669954,0.000097605,0.0001607925,0.000056073415,0.000089707915,0.000013501013,0.00013143054,0.00019035439,0.000036550413],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016232791,0.00013215601,0.0034219115,0.000006593022,0.0002835971,0.0000074598192,0.000080851074,0.000003196406,0.99393064,0.000037895217,0.0006702682,0.0012631208],"study_design_scores_gemma":[0.0014891697,0.00020693448,0.015548424,0.000070908776,0.00004820707,0.00022401902,0.000066218716,0.000027559703,0.9666532,0.00009903672,0.015437585,0.00012871744],"about_ca_topic_score_codex":0.00003855593,"about_ca_topic_score_gemma":0.000023203302,"teacher_disagreement_score":0.027277403,"about_ca_system_score_codex":0.000020272166,"about_ca_system_score_gemma":0.00016999703,"threshold_uncertainty_score":0.74910766},"labels":[],"label_agreement":null},{"id":"W2989943095","doi":"10.1093/biomethods/bpz018","title":"Identification of Penicillium species by MALDI-TOF MS analysis of spores collected by dielectrophoresis","year":2019,"lang":"en","type":"article","venue":"Biology Methods and Protocols","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Centre for International Agricultural Research; Agriculture and Agri-Food Canada; Ministry of Agriculture of the People's Republic of China; Department for International Development","keywords":"Spore; Mycelium; Agar; Penicillium; Dielectrophoresis; Biological system; Materials science; Chromatography; Analytical Chemistry (journal); Chemistry; Botany; Biology; Food science; Nanotechnology; Bacteria","score_opus":0.01798073478131421,"score_gpt":0.36801146733699475,"score_spread":0.3500307325556805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2989943095","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9862149,0.00024550004,0.0060618673,0.000044708413,0.00003847803,0.0069623273,0.00024452474,0.0000075824732,0.00018013072],"genre_scores_gemma":[0.98650914,0.00008861406,0.0070848307,0.000035973997,0.000027347363,0.0030671328,0.00071801594,0.000013567605,0.002455401],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840194,0.00049304415,0.00053374225,0.00037431697,0.000055363416,0.00014157403],"domain_scores_gemma":[0.998892,0.00009500632,0.0004054319,0.00038116175,0.0001886565,0.000037711656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009789438,0.00011936698,0.00038914804,0.000097267555,0.00003994951,0.000016203005,0.00016660478,0.00018918737,0.00017425169],"category_scores_gemma":[0.00035979992,0.00010530785,0.00011290153,0.00036781584,0.00015470383,0.000004097598,0.00006014658,0.000049899787,8.539128e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015395091,0.00005876278,0.058296874,0.000047312456,0.00022825641,1.7622698e-8,0.000026164174,7.965634e-7,0.93918556,0.000111678346,0.0006420096,0.0012486123],"study_design_scores_gemma":[0.00026469366,0.00031617587,0.076315686,0.000006229025,0.000097452845,3.7386351e-7,0.000024969524,0.00010293657,0.9087465,0.00007108233,0.01394446,0.00010946427],"about_ca_topic_score_codex":0.00008084999,"about_ca_topic_score_gemma":0.00002030365,"teacher_disagreement_score":0.03043909,"about_ca_system_score_codex":0.0000070828387,"about_ca_system_score_gemma":0.000034635854,"threshold_uncertainty_score":0.42943296},"labels":[],"label_agreement":null},{"id":"W2991308068","doi":"10.1101/854182","title":"Combined use of metagenomic sequencing and host response profiling for the diagnosis of suspected sepsis","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institutes of Health; National Science Foundation","keywords":"Metagenomics; Shotgun sequencing; Shotgun; Sepsis; DNA sequencing; Computational biology; Profiling (computer programming); Deep sequencing; Host response; Biology; Medicine; Immunology; Genetics; Gene; Genome; Computer science","score_opus":0.03683934135658559,"score_gpt":0.25177414430201794,"score_spread":0.21493480294543235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2991308068","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962912,0.00052890496,0.00088712934,0.00012904954,0.0003678612,0.0012579529,0.00051080086,0.000026766678,2.9643846e-7],"genre_scores_gemma":[0.9932918,0.00024190104,0.0060842596,0.00005360537,0.00007901953,0.0001808392,0.0000024768076,0.000057772606,0.000008335305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99825484,0.00024137716,0.00056057126,0.00060482434,0.00012176024,0.00021662464],"domain_scores_gemma":[0.9971119,0.00042619513,0.0005990974,0.0011151219,0.00068171317,0.000065945576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011048084,0.000261892,0.0004153995,0.00009856786,0.00008985477,0.00009277445,0.00030986496,0.00031082972,0.0000062391814],"category_scores_gemma":[0.0025833698,0.00024080907,0.000157041,0.00014546653,0.00014996606,0.000010022884,0.00036899452,0.00016978174,8.6410245e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038847607,0.000040837007,0.0378756,0.00038123337,0.00020187485,4.0889412e-7,0.0000115464045,0.000073137926,0.96092385,0.000054586093,0.000047691014,7.665403e-7],"study_design_scores_gemma":[0.00036025373,0.00010001417,0.15075158,0.0001108027,0.00015004608,5.7346274e-9,0.000010080355,0.0005091072,0.8474664,4.4824674e-7,0.00032618237,0.00021504807],"about_ca_topic_score_codex":0.000078266625,"about_ca_topic_score_gemma":0.000003841881,"teacher_disagreement_score":0.11345741,"about_ca_system_score_codex":0.00005879619,"about_ca_system_score_gemma":0.0004540322,"threshold_uncertainty_score":0.9819909},"labels":[],"label_agreement":null},{"id":"W2996319374","doi":"10.3138/jammi.2019-0002","title":"Potential influence of rapid diagnostics on timeliness of management decisions for patients with positive blood cultures","year":2019,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Provincial Health Services Authority; Vancouver Coastal Health; Island Health; Vancouver General Hospital","funders":"","keywords":"Psychological intervention; Medicine; Antimicrobial stewardship; Gram staining; Blood culture; Emergency medicine; Internal medicine; Intensive care medicine; Antibiotics; Microbiology; Biology","score_opus":0.001634430696817979,"score_gpt":0.20026300627591184,"score_spread":0.19862857557909386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2996319374","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99910325,0.00005696478,0.00003133047,0.0002925334,0.00019831087,0.00014991382,0.00015770282,4.1378848e-7,0.000009604039],"genre_scores_gemma":[0.99957067,0.00011178827,0.000028923738,0.00019553796,0.000026456817,0.0000011550196,0.000036861395,0.0000026386267,0.000025968227],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993652,0.00008265924,0.00028359098,0.000070950366,0.00013813547,0.000059459184],"domain_scores_gemma":[0.9986051,0.00015318702,0.00058140873,0.00008079468,0.00052842277,0.000051115803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024295191,0.000050258142,0.00013506491,0.000020598101,0.00003116351,0.0000025596878,0.00011009518,0.0000712439,0.000008094062],"category_scores_gemma":[0.0017591217,0.00003255977,0.00005343753,0.00003891166,0.000044612014,0.0000034108039,0.000035471032,0.00005678003,3.9987864e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082569546,0.00074157695,0.8967173,0.00012766682,0.00077979866,0.0000012183576,0.000030909283,0.0006233445,0.09509461,0.00014559834,0.0037694254,0.0011428596],"study_design_scores_gemma":[0.0022445612,0.00057783857,0.98591524,0.00018903258,0.00020836269,0.0000030775398,0.000021566404,0.000006441401,0.010137766,0.000043530443,0.00059316587,0.00005943488],"about_ca_topic_score_codex":0.00035889872,"about_ca_topic_score_gemma":0.0011665296,"teacher_disagreement_score":0.089197926,"about_ca_system_score_codex":0.000023663413,"about_ca_system_score_gemma":0.00023326057,"threshold_uncertainty_score":0.210596},"labels":[],"label_agreement":null},{"id":"W2998769570","doi":"10.1503/cmaj.73957","title":"<i>Candida auris</i> can be identified accurately","year":2020,"lang":"en","type":"letter","venue":"Canadian Medical Association Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Candida auris; Identification (biology); Mass spectrometry; Matrix-assisted laser desorption/ionization; Computer science; Antifungal; Computational biology; Chemistry; Desorption; Microbiology; Biology; Chromatography; Ecology","score_opus":0.021734745890215987,"score_gpt":0.25544322196736324,"score_spread":0.23370847607714726,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998769570","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00862756,0.000094158684,0.00003281457,0.9864434,0.002898136,0.0001515082,0.00034016377,0.00002073819,0.0013915076],"genre_scores_gemma":[0.018860197,0.00013232722,0.000042130065,0.94910467,0.02392325,0.000010442482,0.0018360032,0.000055289718,0.0060356925],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99667495,0.0004264863,0.0006807082,0.00045139634,0.0011368826,0.00062956737],"domain_scores_gemma":[0.9973612,0.00006852332,0.0005236479,0.0002645339,0.00056286907,0.001219215],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00087456533,0.0002665051,0.0003283411,0.00011645992,0.00036504937,0.00046368843,0.0006216644,0.0017662082,0.0022473468],"category_scores_gemma":[0.004674275,0.00028339768,0.00023088559,0.00016644572,0.000053835058,0.000008249342,0.00005525871,0.0027150353,0.00013254058],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000039901815,0.0000049235055,0.000847968,0.000017300252,0.00011967222,0.00051812164,0.000045474644,2.1032007e-7,0.0016534105,0.000002149354,0.9952471,0.0015396565],"study_design_scores_gemma":[0.00041264278,0.000036085272,0.0005122952,0.000033057655,0.000038252383,0.00018824862,0.00005194217,0.000009258079,0.0002999798,0.00004524442,0.9980812,0.00029177364],"about_ca_topic_score_codex":0.0024486047,"about_ca_topic_score_gemma":0.03473488,"teacher_disagreement_score":0.037338745,"about_ca_system_score_codex":0.0004875016,"about_ca_system_score_gemma":0.005290164,"threshold_uncertainty_score":0.9999618},"labels":[],"label_agreement":null},{"id":"W2999444765","doi":"","title":"[Management of Staphylococcus aureus bacteraemia].","year":2019,"lang":"en","type":"article","venue":"PubMed","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thornhill Medical (Canada)","funders":"","keywords":"Medicine; Staphylococcus aureus; Antibiotics; Intensive care medicine; Clinical trial; Antibiotic therapy; Staphylococcal infections; Internal medicine; Microbiology; Bacteria; Biology","score_opus":0.012387471624708792,"score_gpt":0.21719941840316598,"score_spread":0.20481194677845718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2999444765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912483,0.000061890656,0.000048090307,0.00004742192,0.00025570064,0.00043661264,0.0000076187193,0.000010759532,0.007883593],"genre_scores_gemma":[0.99575114,0.000018135688,0.00023084131,0.000043377335,0.000053518343,0.00012391809,0.00004795057,0.000008102812,0.0037230093],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999392,0.00002403595,0.00016183009,0.000203244,0.000070337825,0.00014854978],"domain_scores_gemma":[0.99948955,0.0000043331743,0.000066320936,0.0003478133,0.000048363814,0.00004364736],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018939187,0.000063286236,0.0000784707,0.00002083119,0.0000140188,0.000014591848,0.00013452569,0.000047793197,0.000049192404],"category_scores_gemma":[0.000020590815,0.000062828425,0.00004936796,0.00005748627,0.000018837587,0.0000024858055,0.000073878546,0.000027887307,0.000020307602],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008000578,0.00012504394,0.06632439,0.00017169927,0.00011844051,0.0000012523324,0.00003202059,0.00001174537,0.820982,0.0005186558,0.0010348298,0.11059992],"study_design_scores_gemma":[0.00036317765,0.000021512848,0.8713612,0.00000590839,0.000010351766,4.1118264e-7,0.00004506241,0.0000049712958,0.10437642,0.00003647702,0.023668557,0.00010594353],"about_ca_topic_score_codex":0.0000058500227,"about_ca_topic_score_gemma":0.000002765274,"teacher_disagreement_score":0.80503684,"about_ca_system_score_codex":0.000007631952,"about_ca_system_score_gemma":0.000006943467,"threshold_uncertainty_score":0.2562069},"labels":[],"label_agreement":null},{"id":"W3000553135","doi":"10.5152/kd.2018.29","title":"Prospective Assessment of Blood Cultures Which Were Sent to the Clinical Microbiology Laboratory","year":2020,"lang":"en","type":"article","venue":"Klimik Dergisi/Klimik Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Stantec (Canada)","funders":"","keywords":"Blood culture; Medicine; Sepsis; Prospective cohort study; Blood collection; Venous blood; Internal medicine; Urinary system; Antimicrobial; Surgery; Emergency medicine; Antibiotics; Biology; Microbiology","score_opus":0.0247638858483525,"score_gpt":0.3420495251566071,"score_spread":0.3172856393082546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3000553135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98499084,0.00035705898,0.0009312101,0.012102531,0.00070328516,0.00037196782,0.00007890831,0.000018482204,0.00044571827],"genre_scores_gemma":[0.99169016,0.00020686316,0.0034316487,0.0031276848,0.0013690887,0.000012586454,0.000048384718,0.000023260554,0.00009030778],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9977394,0.0005458593,0.0008091244,0.00046980035,0.00014591918,0.00028994257],"domain_scores_gemma":[0.998079,0.000064700944,0.00040127744,0.0003891076,0.0007904465,0.00027544837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010003586,0.00020349349,0.0003195711,0.000032811207,0.00023826672,0.00010593957,0.00050065416,0.00021005723,0.00010839976],"category_scores_gemma":[0.0011523936,0.00014655651,0.00018967384,0.00023443662,0.00010701694,0.0000101439655,0.00023372204,0.00049808464,0.000019646419],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011266947,0.000225309,0.058599647,0.000018303497,0.00023186769,0.000004881824,0.00029427427,0.00013987103,0.9164221,0.00008579185,0.023491897,0.00037338005],"study_design_scores_gemma":[0.004222841,0.0036431795,0.50567204,0.00010407289,0.00051048567,0.0004507317,0.0029182269,0.00024972408,0.24431369,0.00011362116,0.23683271,0.0009686638],"about_ca_topic_score_codex":0.0000044755716,"about_ca_topic_score_gemma":0.00008614979,"teacher_disagreement_score":0.6721084,"about_ca_system_score_codex":0.000020199259,"about_ca_system_score_gemma":0.00040299405,"threshold_uncertainty_score":0.5976401},"labels":[],"label_agreement":null},{"id":"W3002677550","doi":"10.1093/clinchem/48.10.1816","title":"Bailey and Scott’s Diagnostic Microbiology, Eleventh Edition. Betty Forbes, Daniel F. Sahm, and Alice S. Weissfeld. St. Louis, MO: Mosby, 2002, 1069 pp. ISBN 0-323-01678-2.","year":2002,"lang":"en","type":"article","venue":"Clinical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Eleventh; St louis; Alice (programming language); Art; Gerontology; Humanities; Medicine; Art history; Physics","score_opus":0.025732847058788838,"score_gpt":0.2787903587841284,"score_spread":0.2530575117253395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3002677550","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990483,0.0062292973,0.000078163546,0.0011119073,0.00038042665,0.00026553494,0.00037767604,0.00005593912,0.0010180777],"genre_scores_gemma":[0.98681396,0.0046139844,0.000748823,0.0009269388,0.0013215772,0.000035751986,0.00094075524,0.000043555076,0.0045546675],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99770415,0.00011388837,0.00076365983,0.0009473932,0.00008810817,0.00038277378],"domain_scores_gemma":[0.998374,0.00036212595,0.00022922852,0.00055199495,0.0001668278,0.00031583747],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00052583724,0.0002966212,0.00037171977,0.000014653593,0.00017364816,0.000108680375,0.0002675629,0.0006039751,0.00048118894],"category_scores_gemma":[0.0033025525,0.0003018642,0.0001240244,0.000098558834,0.00050826964,0.0000142303925,0.00028930852,0.00035280574,0.00003368029],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056627705,0.0005228404,0.038165823,0.00021706754,0.00011160552,0.00000907139,0.00002496384,0.0000010698782,0.69622624,0.000021184667,0.259063,0.005580524],"study_design_scores_gemma":[0.0041766907,0.00055357016,0.031750333,0.00029710674,0.00026511654,0.00033316997,0.00017841061,0.0005328496,0.21476687,0.00031469474,0.74514616,0.0016849963],"about_ca_topic_score_codex":0.000028062443,"about_ca_topic_score_gemma":0.00001812757,"teacher_disagreement_score":0.48608318,"about_ca_system_score_codex":0.00001792208,"about_ca_system_score_gemma":0.000041862368,"threshold_uncertainty_score":0.9999434},"labels":[],"label_agreement":null},{"id":"W3004248899","doi":"10.1016/j.jbiotec.2020.01.013","title":"Evaluation of host-based molecular markers for the early detection of human sepsis","year":2020,"lang":"en","type":"article","venue":"Journal of Biotechnology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada","funders":"Bundesministerium für Digitalisierung und Wirtschaftsstandort; Steirische Wirtschaftsförderungsgesellschaft; Österreichische Forschungsförderungsgesellschaft; Austrian Science Fund","keywords":"Sepsis; Primer (cosmetics); Polymerase chain reaction; Nucleic acid; Molecular diagnostics; Biology; DNA; Host (biology); Computational biology; Medicine; Immunology; Bioinformatics; Genetics; Gene; Chemistry","score_opus":0.034271188487941875,"score_gpt":0.2972511072542879,"score_spread":0.262979918766346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3004248899","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97650623,0.00022303757,0.021256434,0.0017272332,0.00008252503,0.00018515167,0.0000059352424,0.0000037885245,0.000009675882],"genre_scores_gemma":[0.9992462,0.000010609581,0.0006168766,0.00006784706,0.00004258475,0.000004204181,0.0000031603035,0.0000068020017,0.0000017397863],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992207,0.000094377494,0.00035918094,0.00009820651,0.0001619301,0.000065604785],"domain_scores_gemma":[0.99876416,0.000025397456,0.0004885687,0.00016736957,0.00053384824,0.000020636215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009576783,0.000055478635,0.00012624961,0.000057974936,0.000034031527,0.000005568153,0.00017922127,0.00017630387,0.00000864533],"category_scores_gemma":[0.0010907709,0.000044699354,0.00012748306,0.00011454621,0.00009739307,0.0000029512516,0.00002309668,0.000083102095,1.9775986e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011004137,0.000024269031,0.00019472625,0.000018073182,0.00006989641,1.2112908e-7,0.000020404053,0.00006901157,0.9895323,0.000024937835,0.000026774305,0.009909432],"study_design_scores_gemma":[0.00063315686,0.0010339622,0.005164686,0.000009372018,0.00013711408,0.0000024260369,0.00010424735,0.0010373028,0.99148333,0.00006128082,0.0002936121,0.000039487633],"about_ca_topic_score_codex":0.000009732169,"about_ca_topic_score_gemma":0.000011840019,"teacher_disagreement_score":0.022739956,"about_ca_system_score_codex":0.000010040741,"about_ca_system_score_gemma":0.00007605015,"threshold_uncertainty_score":0.18227868},"labels":[],"label_agreement":null},{"id":"W3007520989","doi":"10.1101/19006106","title":"Using the Association Between Antibiotic Susceptibility and Genetic Relatedness to Rescue Old Drugs for Empiric Use","year":2019,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University Health Network; Public Health Ontario; University of Toronto","funders":"","keywords":"Antibiotics; Ciprofloxacin; Trimethoprim; Sulfamethoxazole; Empiric therapy; Antibiotic resistance; Lineage (genetic); Medicine; Biology; Microbiology; Genetics; Gene","score_opus":0.05972926318909086,"score_gpt":0.32164782060826597,"score_spread":0.26191855741917514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007520989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948872,0.00009305628,0.0022215345,0.00042241398,0.0007847893,0.0014040684,0.00014594344,0.000027226666,0.000013818809],"genre_scores_gemma":[0.995962,0.000036689577,0.0020885828,0.00018451047,0.00042730314,0.000018197337,0.00027726556,0.000046109668,0.00095933315],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99776113,0.00032968307,0.0004984783,0.00090884155,0.0001858212,0.00031605837],"domain_scores_gemma":[0.9980229,0.00018139066,0.00028803307,0.001057209,0.00034617854,0.000104287625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011953078,0.00026342942,0.00033199947,0.000062597814,0.00018024545,0.0002646512,0.00034143214,0.00055993797,0.000004535771],"category_scores_gemma":[0.0018693657,0.00023014769,0.00014974426,0.0001165904,0.000052099178,0.000006736918,0.0005887846,0.0002799412,0.0000074547406],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023886252,0.000019832534,0.7745804,0.00014219027,0.00008034926,1.81402e-7,0.00018984346,0.00041355193,0.22409892,0.000002803311,0.00013017426,0.00031785463],"study_design_scores_gemma":[0.00029336728,0.00006789953,0.9793937,0.000086663655,0.00018541922,0.0000014063894,0.000054484604,0.00073774887,0.017465005,0.00007676816,0.0012933164,0.00034418484],"about_ca_topic_score_codex":0.0002510008,"about_ca_topic_score_gemma":0.00017484663,"teacher_disagreement_score":0.20663391,"about_ca_system_score_codex":0.00011690661,"about_ca_system_score_gemma":0.00014447703,"threshold_uncertainty_score":0.93851507},"labels":[],"label_agreement":null},{"id":"W3007663110","doi":"10.1080/23744235.2020.1727948","title":"Defining microbial invasion of the bloodstream: a structured review","year":2020,"lang":"en","type":"review","venue":"Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Alberta Health Services","funders":"","keywords":"Bloodstream infection; Medicine; Bacteremia; Blood culture; Intensive care medicine; Antibiotics; Microbiology; Biology","score_opus":0.015986777031613175,"score_gpt":0.2882572966289136,"score_spread":0.2722705195973004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007663110","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00045460518,0.9980897,0.0000031597622,0.000023259638,0.00034858982,0.00061191805,0.00032417057,0.000024897896,0.00011969959],"genre_scores_gemma":[0.0021465642,0.9967658,0.00001501212,0.00018967988,0.0001875216,0.000040052375,0.00058477913,0.000031700554,0.00003889668],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99861306,0.0002834907,0.000498124,0.00038403552,0.00009706927,0.00012423856],"domain_scores_gemma":[0.9987593,0.000034795143,0.0004954275,0.0005506931,0.00008494173,0.00007480721],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000073504554,0.00024615516,0.0006935676,0.000025211708,0.0000845503,0.000028741262,0.00029971526,0.0001601816,0.000051727966],"category_scores_gemma":[0.0012386399,0.0001732435,0.0006424094,0.00021795425,0.00007645335,0.000002265422,0.00022842246,0.00013011384,0.00001428705],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000072898447,0.00013429782,0.000942365,0.059259854,0.00029508988,0.0000023361206,0.000010570008,4.219572e-7,0.0030850251,0.00005112837,0.007567387,0.92864424],"study_design_scores_gemma":[0.00012450032,0.000044856482,0.00014623378,0.013300704,0.00118881,0.000042471846,0.0000014654684,1.4710791e-7,0.00021715202,0.000017664073,0.9847009,0.0002150598],"about_ca_topic_score_codex":0.000016184904,"about_ca_topic_score_gemma":0.00003041448,"teacher_disagreement_score":0.9771336,"about_ca_system_score_codex":0.000020769954,"about_ca_system_score_gemma":0.00041877,"threshold_uncertainty_score":0.70646656},"labels":[],"label_agreement":null},{"id":"W3007726267","doi":"10.1017/s146625231900029x","title":"Quality assessment of systematic reviews and meta-analyses that examine preventive antibiotic uses and management practices designed to prevent disease in livestock","year":2019,"lang":"en","type":"review","venue":"Animal Health Research Reviews","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Systematic review; Psychological intervention; Medicine; Critical appraisal; Livestock; Quality (philosophy); Protocol (science); Best practice; Risk analysis (engineering); Intensive care medicine; MEDLINE; Environmental health; Biotechnology; Alternative medicine; Pathology; Biology; Nursing","score_opus":0.8384946195908648,"score_gpt":0.6450050843867227,"score_spread":0.19348953520414214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007726267","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000818629,0.9754989,0.00005108175,0.00015428105,0.00003158142,0.023344688,0.000053148146,0.0000046708396,0.00004302778],"genre_scores_gemma":[0.0016561272,0.99273914,0.0028925478,0.000080178295,0.00003318248,0.0016749778,0.00012283737,0.000034524586,0.0007664707],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.9741008,0.020763004,0.0028600413,0.0012326515,0.00053969625,0.0005037856],"domain_scores_gemma":[0.99405,0.00089111645,0.0031431888,0.0012984998,0.00019525267,0.00042192286],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.027100705,0.0004891144,0.0049642962,0.00034618826,0.000122106,0.00013180733,0.0004562779,0.00014014842,0.000020911211],"category_scores_gemma":[0.0068578813,0.00032639044,0.0005533124,0.0005287352,0.000107703076,0.00002818696,0.00060542725,0.0003256878,0.000017859269],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028012624,0.00038036224,0.0001621217,0.9514751,0.0006717189,0.0000025083123,0.00004719648,9.8613455e-8,0.00024543214,0.000095179326,0.00033221464,0.046560057],"study_design_scores_gemma":[0.00037084986,0.002161365,0.012763807,0.16600718,0.011472962,0.000011975484,0.00018194255,0.000010173161,0.000027193435,0.00001685789,0.8060134,0.0009623],"about_ca_topic_score_codex":0.00021885685,"about_ca_topic_score_gemma":0.00025468218,"teacher_disagreement_score":0.80568117,"about_ca_system_score_codex":0.00013746788,"about_ca_system_score_gemma":0.00044770888,"threshold_uncertainty_score":0.9999188},"labels":[],"label_agreement":null},{"id":"W3007816339","doi":"10.1186/s12877-019-1402-x","title":"Development and validation of a screening tool for early identification of bloodstream infection in older patients – a retrospective case-control study","year":2020,"lang":"en","type":"article","venue":"BMC Geriatrics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Sunnybrook Hospital; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"Medicine; Logistic regression; Odds ratio; Retrospective cohort study; Internal medicine; Blood urea nitrogen; Cohort; Gastroenterology; Creatinine","score_opus":0.021840183975627904,"score_gpt":0.25723675662926976,"score_spread":0.23539657265364186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007816339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9798732,0.000007935809,0.01916664,0.000004347375,0.000044267406,0.0008646937,0.000031882722,0.000005489067,0.000001591441],"genre_scores_gemma":[0.9966895,0.0000016373644,0.0031631433,0.0000043353325,0.0000343525,0.00004566366,0.00004944743,0.000007689851,0.000004237885],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991175,0.00006490004,0.00043887203,0.0002332244,0.00007764234,0.00006784544],"domain_scores_gemma":[0.99933356,0.000022125223,0.00027921709,0.00010414754,0.00023853278,0.000022428669],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003606587,0.00006917858,0.00012362588,0.000052097635,0.000035764308,0.000019702202,0.000034588993,0.000057926205,0.00000152739],"category_scores_gemma":[0.0007142009,0.000077267774,0.000029186645,0.000152793,0.000011205169,0.000010391553,0.000026287073,0.00002636285,1.7000743e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010067684,0.00018410574,0.907987,0.00006400619,0.000016282338,1.772135e-7,0.0008943099,0.00002701038,0.08949615,0.000003028949,0.000002056708,0.0012252064],"study_design_scores_gemma":[0.0016643871,0.00021461853,0.9412028,0.000004342109,0.000031358944,7.400518e-7,0.00012938849,0.00020761412,0.05646861,0.0000034851942,0.000004057548,0.00006855496],"about_ca_topic_score_codex":0.000047284342,"about_ca_topic_score_gemma":0.00006803302,"teacher_disagreement_score":0.033215854,"about_ca_system_score_codex":0.000011694335,"about_ca_system_score_gemma":0.0000355689,"threshold_uncertainty_score":0.31508884},"labels":[],"label_agreement":null},{"id":"W3007877531","doi":"10.1371/journal.pone.0228935","title":"Assessing impact of MALDI mass spectroscopy on reducing directed antibiotic coverage time for Gram-negative organisms","year":2020,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Regional Laboratory Medicine Program; Impact; University of British Columbia","funders":"","keywords":"Bacteremia; Blood culture; Medicine; Antibiotics; Gram; Matrix-assisted laser desorption/ionization; Bloodstream infection; Internal medicine; Microbiology; Bacteria; Biology; Chemistry; Desorption","score_opus":0.043944128022046586,"score_gpt":0.29072503304837394,"score_spread":0.24678090502632735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007877531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99796075,0.000013842275,0.0010402623,0.0001870875,0.00002471657,0.00033633588,0.00005837709,0.000043903416,0.00033470112],"genre_scores_gemma":[0.98622894,0.00000775395,0.013197087,0.000082995415,0.00016987581,0.0000032489004,0.00018390018,0.000028390788,0.00009778827],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907887,0.000066646746,0.00023154134,0.00034002188,0.000109382934,0.00017354249],"domain_scores_gemma":[0.99933064,0.00005340539,0.00015998038,0.00021645268,0.00015602229,0.000083483465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012149113,0.0001293167,0.00023267562,0.000023720813,0.00006722569,0.0000738763,0.000112804766,0.000084421874,0.000091217116],"category_scores_gemma":[0.0011488221,0.0001266426,0.000094728464,0.00012158406,0.000038582944,0.000009938716,0.000030246705,0.00007149807,0.000015382608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013556967,0.00028837772,0.0015981905,0.00009138268,0.00015130731,4.792977e-7,0.00008264796,0.000018010847,0.9974269,0.0000047061526,0.000106835716,0.000095582516],"study_design_scores_gemma":[0.00040822898,0.0007081309,0.012155976,0.000092694914,0.0000532165,3.2553217e-7,0.000020527636,0.0013999632,0.98498476,0.000042680378,0.0000019797785,0.00013150122],"about_ca_topic_score_codex":0.00001544022,"about_ca_topic_score_gemma":7.200332e-7,"teacher_disagreement_score":0.012442135,"about_ca_system_score_codex":0.000032783453,"about_ca_system_score_gemma":0.000081559316,"threshold_uncertainty_score":0.51643354},"labels":[],"label_agreement":null},{"id":"W3008736804","doi":"10.1099/acmi.0.000111","title":"Identification and characterization of invasive multi-drug-resistant (MDR) Bacteroides genomospecies in Canada","year":2020,"lang":"en","type":"article","venue":"Access Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Ontario; Trillium Health Centre; University of Toronto","funders":"","keywords":"Meropenem; Metronidazole; Bacteroides; Microbiology; Penicillin; Drug resistance; Medicine; Antimicrobial drug; Antimicrobial; Antibiotics; Antibiotic resistance; Biology; Bacteria; Genetics","score_opus":0.020402571874542055,"score_gpt":0.23505105803753135,"score_spread":0.2146484861629893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3008736804","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988408,0.00008963774,0.0001360436,0.0005254542,0.000101245445,0.00017532776,0.000120600685,0.000004517625,0.0000063429147],"genre_scores_gemma":[0.9986738,0.00012557837,0.000068971814,0.0003458579,0.000039671217,0.000009035149,0.0006840449,0.00000863581,0.00004441514],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990952,0.000088099856,0.00036315812,0.000309369,0.000022395767,0.0001217742],"domain_scores_gemma":[0.999499,0.000019072266,0.00019659867,0.00015013924,0.000093227114,0.000041912594],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008658509,0.00009482196,0.00015459294,0.00002720527,0.000032233413,0.000028527884,0.00019887784,0.000056893452,0.000024257724],"category_scores_gemma":[0.00018185985,0.000099517674,0.000018671779,0.00009408204,0.00006318318,0.000013421746,0.0001363203,0.00004711181,0.0000014293865],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003766121,0.00001392134,0.07615898,0.000044348606,0.0000096901695,6.8743014e-7,0.00012426938,0.0000020549257,0.9232945,0.0000072935886,0.00005392197,0.0002526901],"study_design_scores_gemma":[0.00020340655,0.000014628153,0.36797404,0.0000068593085,0.0000040256223,0.0000018751157,0.0000969304,0.000016100315,0.6309336,0.000002023307,0.00066902814,0.000077487784],"about_ca_topic_score_codex":0.04358958,"about_ca_topic_score_gemma":0.49148422,"teacher_disagreement_score":0.44789466,"about_ca_system_score_codex":0.000032135446,"about_ca_system_score_gemma":0.00023434023,"threshold_uncertainty_score":0.9627792},"labels":[],"label_agreement":null},{"id":"W3010073520","doi":"10.1128/aac.02417-19","title":"Using Genetic Distance from Archived Samples for the Prediction of Antibiotic Resistance in <i>Escherichia coli</i>","year":2020,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Ottawa Hospital; Public Health Ontario; University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institute of General Medical Sciences; Government of Canada","keywords":"Escherichia coli; Antibiotics; Microbiology; Antibiotic resistance; Enterobacteriaceae; Biology; Genetics; Gene","score_opus":0.039107163754365785,"score_gpt":0.2595627348210406,"score_spread":0.2204555710666748,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010073520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9823033,0.00010508726,0.016131233,0.00088104646,0.000064558604,0.00027659992,0.00022135962,0.000005318517,0.0000114895765],"genre_scores_gemma":[0.98939764,0.00042704644,0.0080585275,0.0018785823,0.0001248864,0.0000023130451,0.0000772288,0.000013790741,0.000019999758],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993695,0.000029728633,0.00021077777,0.0002467901,0.00003866479,0.00010453346],"domain_scores_gemma":[0.999689,0.000023512468,0.00009309534,0.00013577928,0.000030157104,0.000028477321],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000050697967,0.00008767333,0.00011984239,0.0000080709415,0.00006635398,0.00002618838,0.00010676364,0.00004748167,0.000006519841],"category_scores_gemma":[0.00003418722,0.00007517089,0.000044039054,0.000049257364,0.000078989986,0.0000038972003,0.00002146137,0.000035458583,1.6707318e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021382941,0.000033807217,0.03573771,0.000039362974,0.000024812707,1.3276998e-7,0.000355862,0.000024309482,0.9623127,0.000008048431,0.0007567968,0.0004926091],"study_design_scores_gemma":[0.0017000994,0.0000756057,0.6280784,0.000072791896,0.000031014308,4.320862e-7,0.00011329163,0.0023342513,0.34733364,0.000085854066,0.020002767,0.00017182855],"about_ca_topic_score_codex":0.00008261461,"about_ca_topic_score_gemma":0.000136166,"teacher_disagreement_score":0.6149791,"about_ca_system_score_codex":0.000004174906,"about_ca_system_score_gemma":0.000022077607,"threshold_uncertainty_score":0.306538},"labels":[],"label_agreement":null},{"id":"W3017026257","doi":"10.1099/ijsem.0.004150","title":"Description of Eikenella halliae sp. nov. and Eikenella longinqua sp. nov., derived from human clinical materials, emendation of Eikenella exigua Stormo et al. 2019 and emendation of the genus Eikenella to include species which are strict anaerobes","year":2020,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Saint-Boniface; Canadian Science Centre for Human and Animal Health; University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Eikenella corrodens; Biology; Microbiology; 16S ribosomal RNA; Genus; Zoology; Bacteria; Genetics","score_opus":0.05245853575481892,"score_gpt":0.30011088719107115,"score_spread":0.24765235143625222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3017026257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99405265,0.0011784056,0.0018744252,0.0014299507,0.00065376266,0.00036565555,0.00042980822,0.0000039450174,0.000011410301],"genre_scores_gemma":[0.9969002,0.00091105787,0.00134826,0.00025691482,0.00019672586,0.000003693611,0.0003348239,0.000014123504,0.000034222754],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99704033,0.00061207917,0.0016962537,0.00033539397,0.00018758416,0.00012836613],"domain_scores_gemma":[0.99677384,0.00014019682,0.0017937153,0.00020509944,0.0010001295,0.000087042856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010663508,0.0001962968,0.00059659727,0.000120019205,0.000075150354,0.000039996357,0.00032437147,0.00017204326,0.000045658016],"category_scores_gemma":[0.0006889484,0.00016046481,0.00010447286,0.00010633196,0.00021407587,0.000038898685,0.0002824526,0.00011462057,0.0000015470349],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027129287,0.00009654018,0.042295948,0.00052272336,0.00026822122,0.0000012054143,0.00033259796,0.00006693376,0.9548423,0.00007224308,0.0011843016,0.000045691762],"study_design_scores_gemma":[0.0024349408,0.0008369139,0.7676701,0.0025154809,0.00029069267,0.0002556786,0.0021285645,0.00019960087,0.22227043,0.00017903493,0.0008140705,0.0004045102],"about_ca_topic_score_codex":0.00012746475,"about_ca_topic_score_gemma":0.000106248444,"teacher_disagreement_score":0.7325719,"about_ca_system_score_codex":0.000041352505,"about_ca_system_score_gemma":0.0001004716,"threshold_uncertainty_score":0.65435654},"labels":[],"label_agreement":null},{"id":"W3021587187","doi":"","title":"Bergey’s Manual of Systematic Bacteriology","year":2010,"lang":"en","type":"article","venue":"Springer: New York","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1910,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Bacteriology; Biology; Genetics; Bacteria","score_opus":0.02086989959731851,"score_gpt":0.2621969866698815,"score_spread":0.241327087072563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021587187","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975797,0.000109077286,0.00018773785,0.00008251189,0.0008464195,0.00018765409,0.000004872841,0.000020347014,0.0009817079],"genre_scores_gemma":[0.99530894,0.000006349398,0.0021523791,0.000057859765,0.00034744915,0.000008145681,0.000029820321,0.000013952104,0.0020750908],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913347,0.00005057035,0.00034097314,0.00024944052,0.00006873902,0.00015680301],"domain_scores_gemma":[0.99913466,0.000020151658,0.00015818044,0.000542601,0.000059379377,0.00008502005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026811124,0.00010387098,0.00020320233,0.000032478216,0.000038756207,0.000021159527,0.00023403263,0.00015240507,0.00015720676],"category_scores_gemma":[0.0003855362,0.00009946824,0.00008448722,0.000057070414,0.000057985937,0.0000024798449,0.00008172627,0.000099670004,0.000047432386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014052561,0.000023873656,0.005688902,0.0005048421,0.00002072236,3.345592e-7,0.000057511745,6.686267e-7,0.99238,0.00043895768,0.00058027694,0.00028981318],"study_design_scores_gemma":[0.00079505634,0.00024821056,0.0988203,0.0004055449,0.00008498972,0.000040075513,0.00018126491,0.000034361205,0.8793079,0.0002889505,0.019277267,0.0005160604],"about_ca_topic_score_codex":0.00007896843,"about_ca_topic_score_gemma":0.00022527167,"teacher_disagreement_score":0.11307213,"about_ca_system_score_codex":0.000004100732,"about_ca_system_score_gemma":0.00006528716,"threshold_uncertainty_score":0.4056197},"labels":[],"label_agreement":null},{"id":"W3021986506","doi":"","title":"Plasmonique avancée pour l'étude et la détection précoce de bactéries","year":2016,"lang":"fr","type":"preprint","venue":"HAL (Le Centre pour la Communication Scientifique Directe)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Medicine","score_opus":0.012640891004381542,"score_gpt":0.2526824786068025,"score_spread":0.24004158760242095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021986506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6503135,0.0009537976,0.25648907,0.022483986,0.0006794484,0.00067079364,0.00020164327,0.00021287557,0.06799491],"genre_scores_gemma":[0.9121973,0.0017829577,0.04045245,0.00025843756,0.00013550927,0.00012557508,0.0007982524,0.000096936776,0.04415258],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9862338,0.010790247,0.0008058635,0.001287888,0.00029844692,0.00058379635],"domain_scores_gemma":[0.9933684,0.0012181334,0.0007496352,0.0021965238,0.0021539156,0.0003133857],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.008186731,0.00054217264,0.00043953743,0.00012662672,0.0004421177,0.00062724005,0.0011006682,0.0009206497,0.00028866506],"category_scores_gemma":[0.005059685,0.0005850954,0.00035314052,0.00019928612,0.00045762068,0.000043704258,0.0011878547,0.00070915476,0.00012587075],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072758514,0.0008354908,0.01038776,0.00029242891,0.00018441446,0.000006409468,0.0034989526,0.00004164048,0.8873628,0.06583955,0.0022048852,0.029272951],"study_design_scores_gemma":[0.0010939429,0.0000028386448,0.043968525,0.0023089913,0.00009972574,0.00011286328,0.00021134756,0.001711258,0.80705875,0.007689312,0.13472123,0.001021192],"about_ca_topic_score_codex":0.0008396196,"about_ca_topic_score_gemma":0.0036448962,"teacher_disagreement_score":0.26188383,"about_ca_system_score_codex":0.00019504504,"about_ca_system_score_gemma":0.000947053,"threshold_uncertainty_score":0.9996601},"labels":[],"label_agreement":null},{"id":"W3025248105","doi":"10.1136/bmjopen-2020-038300","title":"Bacteremia Antibiotic Length Actually Needed for Clinical Effectiveness (BALANCE) randomised clinical trial: study protocol","year":2020,"lang":"en","type":"article","venue":"BMJ Open","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal Columbian Hospital; Kingston General Hospital; Health Sciences Centre; McMaster University; Dalhousie University; University of Toronto; Institute for Clinical Evaluative Sciences; Sunnybrook Health Science Centre","funders":"Health Research Council of New Zealand; Groupe canadien de recherche en soins intensifs; Ontario Ministry of Health and Long-Term Care; Canadian Institutes of Health Research; Canadian Frailty Network; Association of Medical Microbiology and Infectious Disease Canada","keywords":"Medicine; Bacteremia; Antibiotics; Intensive care medicine; Vancomycin; Internal medicine; Endocarditis; Clinical trial; Staphylococcus aureus","score_opus":0.3207127429872727,"score_gpt":0.5472093315049643,"score_spread":0.2264965885176916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3025248105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6214782,8.3456894e-7,0.00050672604,0.0002361797,0.00036318178,0.37712914,0.000012587008,0.000026675134,0.00024649393],"genre_scores_gemma":[0.8633181,0.0000021385513,0.0011546812,0.000964246,0.0015561375,0.1326041,0.00014152189,0.000051868687,0.00020723375],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99534976,0.0019409087,0.0013949007,0.0009165139,0.00014724654,0.00025066725],"domain_scores_gemma":[0.9977793,0.00057593046,0.0004743399,0.00072040025,0.00022138024,0.00022866226],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.007371717,0.00022474844,0.0007484847,0.000015398002,0.00012600682,0.00028519222,0.0008128502,0.00025131676,0.000047207974],"category_scores_gemma":[0.009981046,0.00019417079,0.00033679424,0.00009955104,0.000080124,0.000016532398,0.000508143,0.00015702729,0.000027040041],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.79206485,0.002936862,0.100778975,0.00035256334,0.00043936653,0.0000055590717,0.00021187087,0.0000021810527,0.084027335,0.000010412887,0.009179392,0.009990618],"study_design_scores_gemma":[0.80779046,0.01649361,0.1445421,0.0001174372,0.0001758606,0.0000033768094,0.000641049,0.00034493709,0.009869717,0.000025473513,0.019184386,0.0008116017],"about_ca_topic_score_codex":0.000017699496,"about_ca_topic_score_gemma":0.000026955828,"teacher_disagreement_score":0.24452503,"about_ca_system_score_codex":0.000011659297,"about_ca_system_score_gemma":0.00037640374,"threshold_uncertainty_score":0.9983583},"labels":[],"label_agreement":null},{"id":"W3037798567","doi":"10.1111/eve.13318","title":"Outpacing the resistance <i>tsunami</i> : Antimicrobial stewardship in equine medicine, an overview","year":2020,"lang":"en","type":"article","venue":"Equine Veterinary Education","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Antimicrobial stewardship; Medicine; Scrutiny; Stewardship (theology); Antibiotic resistance; Intensive care medicine; Dosing; Infection control; One Health; Resistance (ecology); Best practice; Antimicrobial; Public health; Nursing; Political science; Pharmacology; Antibiotics; Microbiology","score_opus":0.10674644234055371,"score_gpt":0.3577942857365052,"score_spread":0.2510478433959515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3037798567","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9868032,0.0009804878,0.00011207346,0.010502991,0.0005260145,0.00025704014,0.000007959304,0.000025390158,0.0007848521],"genre_scores_gemma":[0.9947158,0.0001461433,0.00046408983,0.0028880439,0.000974971,0.000024861763,0.0003053254,0.000020237427,0.00046049315],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99876887,0.00021911167,0.0003347899,0.00039500603,0.000101017285,0.00018119877],"domain_scores_gemma":[0.9992684,0.000018310366,0.00011908892,0.00041436736,0.000089116125,0.000090727524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000404777,0.00014034752,0.00014192908,0.00003368066,0.000093848794,0.000045134522,0.00027239427,0.00006964659,0.000058649337],"category_scores_gemma":[0.00036603378,0.000118540665,0.000037919945,0.00022661901,0.000075254684,0.000021121596,0.00009110994,0.00010695578,0.000011466982],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011707568,0.000084819556,0.0008889915,0.00009641272,0.0000045247125,0.0000011006684,0.00075787626,0.0000060332986,0.9920861,0.00011785455,0.0037994606,0.0020397508],"study_design_scores_gemma":[0.004187199,0.013932213,0.13191141,0.0013415905,0.00013178943,0.00018003448,0.0074786698,0.0007069323,0.081517965,0.00078673987,0.7555796,0.0022458509],"about_ca_topic_score_codex":0.000070942726,"about_ca_topic_score_gemma":0.00012488414,"teacher_disagreement_score":0.9105681,"about_ca_system_score_codex":0.000027118476,"about_ca_system_score_gemma":0.00014770051,"threshold_uncertainty_score":0.4833948},"labels":[],"label_agreement":null},{"id":"W3037983812","doi":"10.1099/jmm.0.001223","title":"Matrix-assisted laser desorption/ionization time-of-flight MS for the accurate identification of Burkholderia cepacia complex and Burkholderia gladioli in the clinical microbiology laboratory","year":2020,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Providence Health Care; BC Children's Hospital; University of British Columbia","funders":"Cystic Fibrosis Canada; BC Children's Hospital","keywords":"Burkholderia; Clinical microbiology; Microbiology; Identification (biology); Burkholderia cepacia complex; Biology; Bacteria; Genetics","score_opus":0.04849381813870748,"score_gpt":0.33947801897135066,"score_spread":0.2909842008326432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3037983812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882357,0.0005666603,0.0037607825,0.0066717463,0.0003368342,0.00030383142,0.00011848719,0.0000032491027,0.0000027082287],"genre_scores_gemma":[0.99771804,0.00033908183,0.00046160226,0.0008551997,0.00037125696,0.000005727574,0.00022654074,0.000010302562,0.000012265852],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99743444,0.00076184445,0.0013587927,0.00022518385,0.00007111951,0.00014863563],"domain_scores_gemma":[0.99788654,0.00042637085,0.0009756188,0.00021131395,0.0004252176,0.00007491771],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028291568,0.000120408804,0.00036782253,0.000047791058,0.00006389109,0.000022085738,0.0004884231,0.00035652422,0.000098574856],"category_scores_gemma":[0.0027433373,0.000076555225,0.00012899225,0.00019069879,0.00045922492,0.0000100227735,0.00008140856,0.00021747182,0.0000029004505],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002503267,0.00009961578,0.0013723314,0.00004578247,0.00006867783,9.898403e-7,0.0001888379,0.000007987653,0.9929665,0.000041037998,0.0044077463,0.00055018347],"study_design_scores_gemma":[0.010640637,0.002790023,0.15826203,0.00021438785,0.00048755863,0.0009546452,0.001638075,0.0024979105,0.6984481,0.00017530672,0.12323424,0.00065703946],"about_ca_topic_score_codex":0.0000066375837,"about_ca_topic_score_gemma":0.000017647464,"teacher_disagreement_score":0.29451835,"about_ca_system_score_codex":0.000009928819,"about_ca_system_score_gemma":0.00019169343,"threshold_uncertainty_score":0.32842293},"labels":[],"label_agreement":null},{"id":"W3041571491","doi":"10.3138/jammi-2020-0001","title":"<i>Pandoraea</i> sp infection in a lung transplant patient and the critical role of MALDI-TOF in accurate bacterial identification","year":2020,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; Université de Montréal","funders":"","keywords":"Medicine; Lung transplantation; Gram-negative bacterial infections; Population; Transplantation; Lung; Internal medicine; Microbiology; Gynecology; Biology","score_opus":0.0034458875968937175,"score_gpt":0.21071993368963757,"score_spread":0.20727404609274386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3041571491","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943946,0.0002999171,0.00002256363,0.0048457026,0.00027889237,0.000108931185,0.00004136896,7.975294e-7,0.0000072441067],"genre_scores_gemma":[0.9992167,0.0002814657,0.0000018744638,0.000415336,0.00006390859,0.0000025707564,0.000013493475,0.000002767477,0.0000018941726],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987627,0.00043725973,0.0005130463,0.00009510359,0.00011076813,0.0000810686],"domain_scores_gemma":[0.9991886,0.00015066,0.00040460943,0.00006051915,0.00011995765,0.00007567356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000722863,0.00005907976,0.00017612756,0.000023691924,0.000036954716,0.000009997457,0.0000846914,0.00010336716,0.000011818291],"category_scores_gemma":[0.0030697407,0.000040236086,0.000050118095,0.000079808975,0.00010792561,0.000009713501,0.00003725451,0.0001551255,3.6520145e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070677866,0.000088024615,0.60468966,0.00008882251,0.00005682937,0.0000017877788,0.00031997822,0.000030863495,0.39294302,0.00016784226,0.00044605517,0.00046034015],"study_design_scores_gemma":[0.004098856,0.00013984382,0.9721663,0.00014112533,0.00011171834,0.0000349621,0.00013015754,0.0004477134,0.020888822,0.00021611789,0.001506712,0.000117664655],"about_ca_topic_score_codex":0.006434941,"about_ca_topic_score_gemma":0.04427532,"teacher_disagreement_score":0.3720542,"about_ca_system_score_codex":0.00005003121,"about_ca_system_score_gemma":0.0003642853,"threshold_uncertainty_score":0.97316414},"labels":[],"label_agreement":null},{"id":"W3042109114","doi":"10.1093/jacamr/dlaa039","title":"Prolonged empirical antibiotic therapy is correlated with bloodstream infections and increased mortality in a tertiary care hospital in Ethiopia: bacteriology testing matters","year":2020,"lang":"en","type":"article","venue":"JAC-Antimicrobial Resistance","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Addis Ababa University; McGill University Health Centre; McGill University; Institut de recherche, Centre universitaire de santé McGill","keywords":"Medicine; Blood culture; Antibiotic resistance; Antibiotics; Ceftriaxone; Internal medicine; Tertiary referral hospital; Referral; Intensive care medicine; Retrospective cohort study; Microbiology","score_opus":0.0165820335303281,"score_gpt":0.26191178070423676,"score_spread":0.24532974717390865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3042109114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99722004,0.00011157801,0.000019779007,0.0020022108,0.00006217795,0.00047268995,0.000042986016,0.000030636806,0.00003789101],"genre_scores_gemma":[0.9963547,0.00004521657,0.00079831877,0.002573833,0.000053274205,0.000012924367,0.00012367498,0.000023892477,0.000014166446],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99843055,0.00020719487,0.00037229565,0.0006458046,0.000068964284,0.000275206],"domain_scores_gemma":[0.9993597,0.00004951032,0.00014109229,0.0002558408,0.00010169768,0.00009214036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001340923,0.00020878405,0.0002616332,0.00005576414,0.000082623796,0.000060883587,0.00012796228,0.0002203725,0.000009630565],"category_scores_gemma":[0.0003456574,0.00020122864,0.000041465944,0.00030181275,0.00017436447,0.000015254921,0.00006525986,0.0002677788,0.0000029388575],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009184744,0.000085806,0.5820887,0.000056276793,0.00001669039,0.000010973722,0.00060660165,0.0000031505865,0.41679338,3.7530674e-7,0.00014472372,0.000101445614],"study_design_scores_gemma":[0.0013716724,0.00019402667,0.9595536,0.000110651505,0.000014595741,0.000007900301,0.00012927814,0.00003739646,0.038128916,0.0000016988002,0.00021208297,0.00023817772],"about_ca_topic_score_codex":0.0004774412,"about_ca_topic_score_gemma":0.0020732563,"teacher_disagreement_score":0.37866446,"about_ca_system_score_codex":0.000030401525,"about_ca_system_score_gemma":0.00013312625,"threshold_uncertainty_score":0.8205866},"labels":[],"label_agreement":null},{"id":"W3044429900","doi":"10.1186/s12916-020-01653-3","title":"Blood transcriptomic discrimination of bacterial and viral infections in the emergency department: a multi-cohort observational validation study","year":2020,"lang":"en","type":"article","venue":"BMC Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; National Institute for Health and Care Research; University College London; Wellcome Trust; Wellcome","keywords":"Medicine; Emergency department; Triage; Confidence interval; Internal medicine; Observational study; Receiver operating characteristic; Antimicrobial stewardship; Viral load; Cohort; Cohort study; Infection control; Prospective cohort study; Emergency medicine; Immunology; Intensive care medicine; Virus; Antibiotics; Microbiology; Antibiotic resistance","score_opus":0.0839978202654266,"score_gpt":0.3204280090808737,"score_spread":0.2364301888154471,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3044429900","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99787354,0.000052207197,0.0010177195,0.00038870558,0.00014141735,0.00048212547,0.00001093438,0.00000538691,0.000027966002],"genre_scores_gemma":[0.9990018,0.000031073476,0.00018104711,0.00005362674,0.00019131455,0.000043698055,0.00047796473,0.00000469062,0.000014804296],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99918604,0.00015805785,0.00030789844,0.00018851488,0.00010107031,0.00005843468],"domain_scores_gemma":[0.99970514,0.000017628805,0.0000776588,0.00011705694,0.000056269528,0.000026254142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037019394,0.000067351895,0.00009558032,0.00002372903,0.000042388903,0.0000065544064,0.000070358125,0.00003295939,0.000053598935],"category_scores_gemma":[0.0005142542,0.000051089974,0.000020799871,0.00009522333,0.000034870867,0.000008169333,0.000015144693,0.000038052716,4.9376865e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003204688,0.00022666538,0.4639582,0.000024616988,0.000012417525,1.3002452e-7,0.0012229825,0.0000036245722,0.53434473,0.000039256567,0.00004336563,0.00009197066],"study_design_scores_gemma":[0.0015608644,0.0004750354,0.9912514,0.000008126971,0.00007983703,0.0000019723818,0.0009052458,0.00018438886,0.005351345,0.000016586177,0.000109214445,0.000055969012],"about_ca_topic_score_codex":0.00006984439,"about_ca_topic_score_gemma":0.00053093454,"teacher_disagreement_score":0.52899337,"about_ca_system_score_codex":0.0000034605116,"about_ca_system_score_gemma":0.000023528828,"threshold_uncertainty_score":0.20833886},"labels":[],"label_agreement":null},{"id":"W3046592925","doi":"10.1139/cjm-2020-0244","title":"Uneven genotypic diversity of <i>Escherichia coli</i> in fecal sources limits the performance of a library-dependent method of microbial source tracking on the southwestern French Atlantic coast","year":2020,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Diversity index; Biology; Genotype; Source tracking; Feces; Bay; Fecal coliform; Sewage; Ecology; Geography; Environmental science; Environmental engineering","score_opus":0.020492056070337973,"score_gpt":0.20983171346100046,"score_spread":0.1893396573906625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3046592925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99859226,0.00013956153,0.00017714433,0.0008011281,0.00009940219,0.000109770226,0.00007059545,0.0000010672742,0.0000090850945],"genre_scores_gemma":[0.9992635,0.000018395038,0.00019579654,0.00039769677,0.000074219,4.1965956e-7,0.000019365782,0.000008573834,0.000022011453],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887085,0.0003394357,0.00044783903,0.00013763685,0.00003948255,0.00016477336],"domain_scores_gemma":[0.99910897,0.00008599176,0.0004601575,0.00015374299,0.00010310259,0.00008802274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004354045,0.000100722165,0.0002516524,0.000055845852,0.000083260034,0.000011676074,0.0004907056,0.00011700615,0.000032813732],"category_scores_gemma":[0.00014894351,0.00007109603,0.000106773514,0.00012024171,0.00020316559,0.0000073663873,0.00008421953,0.00017574172,9.0479807e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007996565,0.000016531594,0.16987236,0.000030305126,0.00004022537,0.000001540927,0.0019152489,0.00022491219,0.8274998,0.0000037957254,0.00012439763,0.00019091924],"study_design_scores_gemma":[0.00059755344,0.0005327238,0.121201456,0.00008695918,0.000047904923,0.000055631972,0.00084270845,0.00003666573,0.87498295,0.000004906303,0.001494264,0.000116303425],"about_ca_topic_score_codex":0.0019221104,"about_ca_topic_score_gemma":0.010804895,"teacher_disagreement_score":0.04867091,"about_ca_system_score_codex":0.000011680718,"about_ca_system_score_gemma":0.00035019842,"threshold_uncertainty_score":0.6029385},"labels":[],"label_agreement":null},{"id":"W3080637717","doi":"10.1093/ofid/ofaa371","title":"Real-world Time to Positivity of 2 Widely Used Commercial Blood Culture Systems in Patients With Severe Manifestations of Sepsis: An Analysis of the FABLED Study","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Coastal Health; Western University; McGill University; Lions Gate Hospital; McGill University Health Centre; Institute of Infection and Immunity; University of British Columbia; Surrey Memorial Hospital","funders":"Fonds de Recherche du Québec - Santé; Vancouver Coastal Health Research Institute; St. Paul's Foundation","keywords":"Medicine; Blood culture; Interquartile range; Sepsis; Prospective cohort study; Bacteremia; Internal medicine; Cohort; Cohort study; Population; Surgery; Antibiotics","score_opus":0.01126924565876828,"score_gpt":0.2673492324017671,"score_spread":0.2560799867429988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3080637717","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980937,0.0000030771064,0.000007172534,0.00004264167,0.000015669873,0.0009488603,0.0005023549,0.0000054574793,0.00038105203],"genre_scores_gemma":[0.99952745,4.3052432e-7,0.000012957798,0.00005465104,0.0000061559567,0.000028162545,0.0003096982,0.000008223804,0.000052256066],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990321,0.00023707903,0.00029811665,0.000222577,0.00012418782,0.00008594247],"domain_scores_gemma":[0.9991339,0.000016265058,0.00023225215,0.00031289298,0.00023745657,0.000067246074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000087578796,0.00009139565,0.00027224873,0.000057146368,0.00006207138,0.000036399946,0.00022858565,0.000029315404,0.000019209883],"category_scores_gemma":[0.000105857886,0.00007039829,0.00006855093,0.0006056337,0.000030181214,0.000017944092,0.00015193982,0.000031239873,6.429295e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017415252,0.0014402182,0.9821847,0.000025157293,0.0003689578,3.151529e-7,0.00036492458,0.0015572489,0.013759866,0.000010518691,0.000080355676,0.00003357866],"study_design_scores_gemma":[0.00093362504,0.0007452355,0.9962357,0.00002221062,0.00060642016,1.371241e-7,0.00043003476,0.00009420202,0.00083872816,0.0000025596607,0.0000059877,0.00008512371],"about_ca_topic_score_codex":0.0028379965,"about_ca_topic_score_gemma":0.01022925,"teacher_disagreement_score":0.014051029,"about_ca_system_score_codex":0.000011779734,"about_ca_system_score_gemma":0.00006339765,"threshold_uncertainty_score":0.57081616},"labels":[],"label_agreement":null},{"id":"W3082073825","doi":"10.1503/cmaj.76776","title":"Addressing a dual public health emergency: supporting physicians to prescribe opioid medications","year":2020,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine","score_opus":0.05153898582255761,"score_gpt":0.3175647084233477,"score_spread":0.2660257226007901,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3082073825","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.47260654,0.00017807349,0.0046584713,0.51991725,0.0012729643,0.00026910327,0.00010113456,0.000037082205,0.00095935434],"genre_scores_gemma":[0.95536345,0.00006188138,0.00052117114,0.04018896,0.0033797529,0.000010909203,0.00016632902,0.000020146295,0.00028736776],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977602,0.00024194189,0.0005908994,0.00025928236,0.0006182248,0.00052948453],"domain_scores_gemma":[0.99662715,0.0000186629,0.00033862,0.0001262114,0.00041006267,0.0024792932],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016254503,0.000102783655,0.000156987,0.000064822474,0.0004489222,0.00013134704,0.0002523765,0.00018237991,0.0015042515],"category_scores_gemma":[0.006979125,0.00011359113,0.00008449931,0.00026823726,0.000019814046,0.00001584632,0.00004260697,0.00036861925,0.000076890785],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000071896343,0.00007341056,0.042321682,0.000035170793,0.00017479362,0.000028648165,0.005013108,0.000009605257,0.027531384,0.00014410795,0.808452,0.11620891],"study_design_scores_gemma":[0.00040317536,0.00013752274,0.037423477,0.000042201376,0.000012863381,0.00005586129,0.001606888,0.00039716007,0.00031387268,0.000036507463,0.95931065,0.0002598133],"about_ca_topic_score_codex":0.0005428385,"about_ca_topic_score_gemma":0.01115543,"teacher_disagreement_score":0.48275694,"about_ca_system_score_codex":0.00021801211,"about_ca_system_score_gemma":0.0036966938,"threshold_uncertainty_score":0.9994085},"labels":[],"label_agreement":null},{"id":"W3083432726","doi":"10.1016/j.idcr.2020.e00952","title":"First case report of infective endocarditis associated with Microbacterium maritypicum","year":2020,"lang":"en","type":"article","venue":"IDCases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Electricity Association; Ottawa Hospital; University of Ottawa","funders":"","keywords":"Microbacterium; Vancomycin; Infective endocarditis; Bacteremia; Microbiology; Endocarditis; Medicine; Gram staining; Bacilli; Gram-Positive Cocci; Teicoplanin; Bacteria; Antibiotics; Biology; Surgery; Staphylococcus aureus","score_opus":0.019047890390526564,"score_gpt":0.23651922388923022,"score_spread":0.21747133349870365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3083432726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998862,0.000031748867,0.00025152578,0.00014876916,0.00006784982,0.0001234822,0.00010281545,0.000021738073,0.00039003324],"genre_scores_gemma":[0.9992063,0.000004043877,0.00024160165,0.00012452899,0.000098853096,0.000008139068,0.00026305675,0.000011507896,0.000041984367],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99933803,0.00005035158,0.00020144612,0.00025006663,0.000054874614,0.000105219355],"domain_scores_gemma":[0.99937683,0.00003144221,0.00015325916,0.00019487846,0.00018004849,0.0000635614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007001655,0.00009033871,0.00013795882,0.000012765354,0.00005891232,0.000019638626,0.00005303626,0.00006427953,0.000042776683],"category_scores_gemma":[0.0011356476,0.0000858223,0.000056745565,0.00008892141,0.0000686835,0.000004622187,0.000056962002,0.000046896537,0.0000030947886],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007061658,0.00011814605,0.08239006,0.000048874965,0.00014925355,0.0061365343,0.00017102857,0.00001537807,0.909226,0.000011184727,0.0013910786,0.00027182803],"study_design_scores_gemma":[0.0011549416,0.00092449127,0.37297973,0.000069050664,0.00012316527,0.01911763,0.00030264948,0.00004273582,0.594249,0.000017232773,0.010558532,0.00046081166],"about_ca_topic_score_codex":0.00015726441,"about_ca_topic_score_gemma":0.00043287806,"teacher_disagreement_score":0.314977,"about_ca_system_score_codex":0.00000948352,"about_ca_system_score_gemma":0.00004791145,"threshold_uncertainty_score":0.34997317},"labels":[],"label_agreement":null},{"id":"W3084291069","doi":"10.1128/cmr.00053-19","title":"Performance and Application of 16S rRNA Gene Cycle Sequencing for Routine Identification of Bacteria in the Clinical Microbiology Laboratory","year":2020,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":327,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"16S ribosomal RNA; Identification (biology); Clinical microbiology; Biology; Sanger sequencing; Bacteria; Computational biology; Microbiology; Ribosomal RNA; DNA sequencing; Gene; Genetics; Ecology","score_opus":0.09026748702434258,"score_gpt":0.40263443613111877,"score_spread":0.3123669491067762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3084291069","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09214374,0.90286064,0.0004776385,0.00008271227,0.00053531665,0.0032326553,0.0006508829,0.000009215014,0.0000071955424],"genre_scores_gemma":[0.011434475,0.9839069,0.0012192331,0.00020950327,0.00037603424,0.00022587398,0.0025824108,0.000028790746,0.000016782347],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9921115,0.0022947656,0.0044584726,0.00089900993,0.000013593309,0.00022262768],"domain_scores_gemma":[0.99563503,0.00050717726,0.002728885,0.0008707127,0.0002013859,0.000056833815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0066472944,0.00032225603,0.0021955103,0.00005533819,0.0000538358,0.000012787092,0.0006440336,0.0008677357,0.000004800654],"category_scores_gemma":[0.0026015632,0.00023424109,0.0005759171,0.00022924581,0.0005752053,0.0000070663864,0.00018076533,0.000376599,0.000015297497],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053714404,0.00012849257,0.0015774177,0.006165462,0.00009450916,1.0399412e-7,0.00003079471,2.1712098e-7,0.4738092,0.000016377518,0.00048966316,0.51763403],"study_design_scores_gemma":[0.0003677435,0.00034760468,0.000619943,0.00067431876,0.00029930405,0.00003082732,0.000009054952,0.000018271809,0.00046944205,0.000005637982,0.99693346,0.00022439737],"about_ca_topic_score_codex":0.0000037949064,"about_ca_topic_score_gemma":0.000012641892,"teacher_disagreement_score":0.9964438,"about_ca_system_score_codex":0.000028497072,"about_ca_system_score_gemma":0.00032622655,"threshold_uncertainty_score":0.9552074},"labels":[],"label_agreement":null},{"id":"W3087726342","doi":"10.1099/ijsem.0.004461","title":"Enemella gen. nov., Enemella evansiae sp. nov., Enemella dayhoffiae sp. nov. and Parenemella sanctibonifatiensis gen. nov., sp. nov., novel taxa assignable to the family Propionibacteriaceae and derived from human clinical samples","year":2020,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Saint-Boniface; Institut National de Santé Publique du Québec; Canadian Science Centre for Human and Animal Health; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Biology; Diaminopimelic acid; 16S ribosomal RNA; Taxon; Microbiology; Bacteria; Taxonomy (biology); Actinomycetales; Zoology; Botany; Genetics","score_opus":0.05568369768265714,"score_gpt":0.29176865258022877,"score_spread":0.23608495489757164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3087726342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9841934,0.004978634,0.0054414687,0.0025503952,0.001382971,0.00084342324,0.0005256024,0.000021851385,0.00006224109],"genre_scores_gemma":[0.98985153,0.00091267464,0.005695907,0.0013246369,0.0015458546,0.000026162592,0.0004868772,0.000048195005,0.00010816946],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9954452,0.0005779779,0.0022967746,0.00091908535,0.00031669493,0.00044427233],"domain_scores_gemma":[0.9963301,0.00037599882,0.001364472,0.00046155436,0.0011016267,0.00036625084],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012485635,0.0005097482,0.0010283734,0.00016580024,0.0003799012,0.00024313034,0.00072270335,0.00042435608,0.00010347203],"category_scores_gemma":[0.0009867658,0.00040007185,0.00026016985,0.00015895031,0.00045855143,0.000051789513,0.0005731559,0.0003576189,0.000026179867],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034131407,0.000189259,0.014409372,0.0005568345,0.00069789746,0.0000147766295,0.00042213796,0.000073989,0.9801975,0.00009455992,0.002716983,0.0002853823],"study_design_scores_gemma":[0.024873286,0.0064648613,0.6350915,0.011433746,0.0031438377,0.009324336,0.012979522,0.0032299822,0.13142255,0.0007868358,0.15484734,0.0064021987],"about_ca_topic_score_codex":0.00028746668,"about_ca_topic_score_gemma":0.00018513933,"teacher_disagreement_score":0.84877497,"about_ca_system_score_codex":0.00009583228,"about_ca_system_score_gemma":0.00030624252,"threshold_uncertainty_score":0.9998451},"labels":[],"label_agreement":null},{"id":"W3089815901","doi":"10.3138/jammi-2020-0004","title":"Comparison of Accelerate PhenoTest BC Kit and MALDI-TOF MS/VITEK 2 System for the rapid identification and antimicrobial susceptibility testing of gram-negative bacilli causing bloodstream infections","year":2020,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Bacilli; Meropenem; Matrix-assisted laser desorption/ionization; Antimicrobial; Microbiology; Chemistry; Biology; Bacteria; Antibiotics; Antibiotic resistance; Desorption","score_opus":0.01741060219473021,"score_gpt":0.25947117277251963,"score_spread":0.24206057057778943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3089815901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99677247,0.00024601768,0.00034298687,0.001953479,0.00028255882,0.00022175582,0.00017310254,0.0000026366797,0.0000049679015],"genre_scores_gemma":[0.99962777,0.00006255796,0.00004236797,0.00013053638,0.000104584775,0.000002327641,0.00001962251,0.000005344981,0.000004892741],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99870515,0.00027037878,0.00065805076,0.00015122083,0.000113195325,0.000102018545],"domain_scores_gemma":[0.99737996,0.0005539648,0.0012745304,0.00010542466,0.0005791675,0.000106939966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085097767,0.0000938986,0.00028370845,0.000023592862,0.00018425236,0.000019181032,0.000105091174,0.00012168028,0.0000058040373],"category_scores_gemma":[0.0062000784,0.000068038404,0.000070064205,0.00011485464,0.00021379549,0.000012642166,0.00007532423,0.00014789058,2.1304231e-8],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006518818,0.00007726492,0.3660347,0.00025018767,0.00015996763,1.8738339e-7,0.00011817454,0.00005397569,0.6318557,0.000015840145,0.0005544464,0.00081434],"study_design_scores_gemma":[0.0030806905,0.0006436407,0.65423673,0.00032842494,0.00081695005,0.00006229161,0.00096932496,0.001644456,0.33704966,0.000050379535,0.00086569274,0.00025175954],"about_ca_topic_score_codex":0.005220713,"about_ca_topic_score_gemma":0.013791671,"teacher_disagreement_score":0.29480606,"about_ca_system_score_codex":0.000057012512,"about_ca_system_score_gemma":0.00045975987,"threshold_uncertainty_score":0.7892191},"labels":[],"label_agreement":null},{"id":"W3094474437","doi":"10.14745/ccdr.v46i10a04","title":"Matrix-assisted laser desorption/ionization timeof-flight mass spectrometry-based identification of security-sensitive bacteria: Considerations for Canadian Bruker users","year":2020,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Government of Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Mass spectrometry; Identification (biology); Matrix-assisted laser desorption/ionization; Chemistry; Matrix (chemical analysis); Chromatography; Computational biology; Computer science; Desorption; Biology; Botany","score_opus":0.02024178428243147,"score_gpt":0.2505601699403969,"score_spread":0.23031838565796545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3094474437","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9872792,0.0001098067,0.0051440927,0.0048604663,0.00024123037,0.00087724894,0.0012632638,0.00003383417,0.00019087897],"genre_scores_gemma":[0.99029833,0.0000092877835,0.0028131462,0.00067312963,0.000071191294,0.000048225807,0.005886647,0.00002846714,0.00017155016],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842894,0.00016489632,0.00063374673,0.00037218936,0.00017621474,0.00022402577],"domain_scores_gemma":[0.9975391,0.000077924706,0.00036477426,0.000795706,0.0007663796,0.00045610892],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002959302,0.00015683094,0.00021233571,0.0000669153,0.00031624478,0.00008625736,0.0001683018,0.00009326822,0.00011767643],"category_scores_gemma":[0.0019682732,0.00018978804,0.00010067848,0.00024468513,0.00007702013,0.000016816959,0.000037055863,0.00008279912,0.0000024085296],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012386756,0.000066041066,0.0065457816,0.00012423708,0.00010626511,0.000046343674,0.000057579164,0.0006582487,0.98345566,0.00014914226,0.008644485,0.000022367956],"study_design_scores_gemma":[0.0026114017,0.00016856215,0.1570831,0.00011631346,0.0006072354,0.000073737036,0.0009864308,0.022143545,0.7747038,0.0004535139,0.03965606,0.0013962736],"about_ca_topic_score_codex":0.12730631,"about_ca_topic_score_gemma":0.6259479,"teacher_disagreement_score":0.4986416,"about_ca_system_score_codex":0.0001949827,"about_ca_system_score_gemma":0.0038916115,"threshold_uncertainty_score":0.87850505},"labels":[],"label_agreement":null},{"id":"W3097699056","doi":"10.3791/61799","title":"Semi-Quantitative Analysis of Peptidoglycan by Liquid Chromatography Mass Spectrometry and Bioinformatics","year":2020,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Peptidoglycan; Biology; Cell wall; Bacteria; Mass spectrometry; Computational biology; Microbiology; Biochemistry; Chemistry; Genetics; Chromatography","score_opus":0.026255835586170173,"score_gpt":0.37532106576566565,"score_spread":0.3490652301794955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3097699056","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9884464,0.0007695408,0.010452317,0.00007711978,0.000053692223,0.00006480229,0.000031501844,0.0000040853024,0.00010054395],"genre_scores_gemma":[0.9830276,0.00020769883,0.016486842,0.00016792818,0.00003706294,0.0000010620058,0.00005063709,0.000009394272,0.000011780577],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988908,0.00007341373,0.0006125001,0.00012769541,0.00018611898,0.000109467015],"domain_scores_gemma":[0.99895465,0.000018723287,0.00060327107,0.000117462005,0.0001674219,0.00013843928],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021136526,0.00011147249,0.0003448699,0.0001776893,0.00003460767,0.00003306761,0.00013528546,0.000066857705,0.00005502904],"category_scores_gemma":[0.00018546704,0.00010226611,0.0001928576,0.00046269633,0.00007267637,0.000015923059,0.000044759214,0.00006243223,8.1115513e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003422609,0.00007285332,0.0026165622,0.000025156867,0.0008756031,7.7569325e-7,0.0008789169,0.000004032601,0.99451256,0.000019521023,0.0006156686,0.00003611066],"study_design_scores_gemma":[0.0009207952,0.0014113573,0.0014875487,0.000019080255,0.00026642944,0.0000040300115,0.0018514061,0.00094463065,0.99233615,0.0000044693516,0.0006218138,0.0001322819],"about_ca_topic_score_codex":0.0000049349164,"about_ca_topic_score_gemma":5.1080895e-7,"teacher_disagreement_score":0.0060345237,"about_ca_system_score_codex":0.0000093584895,"about_ca_system_score_gemma":0.00003089397,"threshold_uncertainty_score":0.41702908},"labels":[],"label_agreement":null},{"id":"W3098738017","doi":"10.1101/403204","title":"Rapid heuristic inference of antibiotic resistance and susceptibility by genomic neighbor typing","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Programme Grants for Applied Research; Medical Research Council; Faculty of Arts and Sciences; National Institutes of Health; Bill and Melinda Gates Foundation; Biotechnology and Biological Sciences Research Council; Rosetrees Trust; University of East Anglia; Canadian Institutes of Health Research; David and Lucile Packard Foundation; National Institute for Health and Care Research; Oxford Nanopore Technologies","keywords":"Minion; Typing; Antibiotic resistance; Metagenomics; Neisseria gonorrhoeae; Antibiotics; Computational biology; Nanopore sequencing; Microbiology; Biology; Genome; Genetics; Gene","score_opus":0.014849282091501988,"score_gpt":0.23468874071769405,"score_spread":0.21983945862619206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3098738017","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99513346,0.0024282273,0.00094689825,0.000055950313,0.00051127,0.00045328846,0.0003918002,0.00006205198,0.000017042848],"genre_scores_gemma":[0.99622977,0.0006127091,0.0027079494,0.00006378499,0.0002822113,0.0000147362125,0.0000052865203,0.000064784945,0.000018770314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974266,0.00021139887,0.0006647428,0.0011869489,0.00014886259,0.00036140587],"domain_scores_gemma":[0.9971588,0.0000591237,0.00055471284,0.0014591527,0.0005884717,0.00017972584],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007654141,0.000399548,0.00047253654,0.00008272706,0.00013194187,0.00013553556,0.0004559703,0.0004957772,0.000039184713],"category_scores_gemma":[0.0013582256,0.00045935923,0.000102336824,0.00015676122,0.0004147816,0.000010823813,0.00059594994,0.0002876188,0.000010904562],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057380224,0.00008046217,0.024340725,0.00059767807,0.00005955224,8.818104e-7,0.000005828553,0.0000010853394,0.9742792,0.000044180535,0.0005285629,0.0000044324634],"study_design_scores_gemma":[0.00037535993,0.00010170652,0.29815617,0.00031950334,0.0000768217,1.3702935e-8,0.0000035421504,0.00008532889,0.69738024,0.000005572947,0.0028712559,0.0006244551],"about_ca_topic_score_codex":0.00003985905,"about_ca_topic_score_gemma":0.000020578416,"teacher_disagreement_score":0.27689898,"about_ca_system_score_codex":0.000072864015,"about_ca_system_score_gemma":0.00039572042,"threshold_uncertainty_score":0.99978584},"labels":[],"label_agreement":null},{"id":"W3098801741","doi":"10.1186/s12885-020-07618-2","title":"Development and utility assessment of a machine learning bloodstream infection classifier in pediatric patients receiving cancer treatments","year":2020,"lang":"en","type":"article","venue":"BMC Cancer","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Medicine; Machine learning; Neutropenia; Artificial intelligence; Test set; Receiver operating characteristic; Blood test; Algorithm; False positive paradox; Internal medicine; Computer science; Chemotherapy","score_opus":0.03982329149997511,"score_gpt":0.30933373518784313,"score_spread":0.26951044368786803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3098801741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992722,0.00019877814,0.00010029654,0.000027859287,0.00008495419,0.00016188728,0.000011891127,0.000008448969,0.0001336361],"genre_scores_gemma":[0.99824005,0.00036513578,0.0010702593,0.00003065947,0.00006865165,0.0000587693,0.00006944235,0.0000085864995,0.00008846848],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99923134,0.000067388195,0.00023919994,0.00027704157,0.00008065531,0.0001043976],"domain_scores_gemma":[0.99967784,0.000009433002,0.00012602842,0.000074437754,0.000059211074,0.00005307462],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000106132975,0.00009127729,0.00011647356,0.000027464468,0.00004365114,0.00001344276,0.00003574677,0.000059875612,0.000043647036],"category_scores_gemma":[0.00010286739,0.0000903726,0.000024222903,0.00011000094,0.000014686542,0.0000060222624,0.00005724029,0.000068714064,4.0766466e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002727376,0.000085429514,0.9597568,0.000082429295,0.000014200096,6.963805e-8,0.00015410974,0.000058343972,0.02285343,6.5887804e-7,0.000013989789,0.016953265],"study_design_scores_gemma":[0.0006892483,0.000050191007,0.99059886,0.000015175135,0.000020352743,6.517566e-8,0.000012208482,0.0010769024,0.0062258565,6.0379784e-7,0.0012258255,0.00008470022],"about_ca_topic_score_codex":0.0005065038,"about_ca_topic_score_gemma":0.0038682187,"teacher_disagreement_score":0.030842071,"about_ca_system_score_codex":0.000048872513,"about_ca_system_score_gemma":0.00017507949,"threshold_uncertainty_score":0.36852878},"labels":[],"label_agreement":null},{"id":"W3107249468","doi":"10.1093/cid/ciaa1322","title":"Utilization of Blood Culture in South Asia for the Diagnosis and Treatment of Febrile Illness","year":2020,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Centers for Disease Control and Prevention; Bill and Melinda Gates Foundation","keywords":"Medicine; Blood culture; Logistic regression; Antibiotics; Medical diagnosis; Intensive care medicine; Internal medicine; Emergency medicine","score_opus":0.08639623814104114,"score_gpt":0.36225711711703884,"score_spread":0.2758608789759977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3107249468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982206,0.0010013743,0.00017761566,0.000105864565,0.0000636005,0.00030946263,0.00010124664,0.0000063565044,0.000013869511],"genre_scores_gemma":[0.998895,0.0007655338,0.000012478457,0.000065836204,0.00011610847,0.000060546365,0.000069693284,0.000005021442,0.000009769647],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99943936,0.00005788342,0.00026060388,0.00016472978,0.000027464896,0.00004998006],"domain_scores_gemma":[0.99954396,0.00012226921,0.0001065223,0.00011242245,0.0000685356,0.000046293084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059676473,0.00005575745,0.00013591867,0.00000720985,0.000031347154,0.000008737059,0.00003923098,0.000058107988,0.000007814463],"category_scores_gemma":[0.0012671407,0.000039451697,0.000089989786,0.000056425182,0.00009094226,0.0000021553988,0.000019865765,0.0000151113945,2.2671374e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000591328,0.0005409171,0.9801604,0.000048620517,0.0000617513,1.3090272e-7,0.0002837075,0.000016949693,0.006309056,0.00004169392,0.00009599503,0.012381602],"study_design_scores_gemma":[0.0023055137,0.0018914063,0.961395,0.000022427364,0.0003282762,3.5606377e-7,0.0004870588,0.00032290662,0.029439028,0.00010168331,0.0035770002,0.0001293338],"about_ca_topic_score_codex":0.000010766606,"about_ca_topic_score_gemma":0.000038623202,"teacher_disagreement_score":0.023129972,"about_ca_system_score_codex":0.00000196809,"about_ca_system_score_gemma":0.000025515108,"threshold_uncertainty_score":0.16087934},"labels":[],"label_agreement":null},{"id":"W3109591975","doi":"10.1093/cid/ciaa1333","title":"Antibiotic Use Prior to Hospital Presentation Among Individuals With Suspected Enteric Fever in Nepal, Bangladesh, and Pakistan","year":2020,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Bill and Melinda Gates Foundation","keywords":"Medicine; Antibiotics; Blood culture; Internal medicine; Confidence interval; Incidence (geometry); Antibiotic sensitivity; Prospective cohort study; Urine; Microbiology","score_opus":0.023805467902156513,"score_gpt":0.3212405573943912,"score_spread":0.29743508949223474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3109591975","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988487,0.000036513447,0.00013368948,0.00029999815,0.00009903855,0.00046585614,0.000045488683,0.000048142825,0.000022571827],"genre_scores_gemma":[0.9988826,0.000033062694,0.00010455165,0.0005770918,0.00016552319,0.0000129168775,0.00016717897,0.00001795513,0.000039124494],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987375,0.00016095633,0.00036512213,0.00048637588,0.00008877303,0.00016126953],"domain_scores_gemma":[0.9992541,0.00008780444,0.000105496656,0.00019086282,0.000083169216,0.0002785314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010148448,0.00012966793,0.00018721518,0.000035851874,0.000058177717,0.00017412058,0.000080822436,0.000091222464,0.000028370827],"category_scores_gemma":[0.001422704,0.000120810604,0.000054658354,0.00019682846,0.00013311788,0.000023783276,0.000101694124,0.00009073315,0.000009811411],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052403517,0.00027535547,0.9934842,0.000023981958,0.000030716492,0.0000058783667,0.000094635616,0.00000829532,0.0047842385,0.0000050731624,0.0004367698,0.00079847523],"study_design_scores_gemma":[0.0008835693,0.0006430811,0.9972576,0.000025554973,0.000034059663,8.249667e-7,0.00008513851,0.000047683985,0.0004186533,0.000007249171,0.00043055473,0.00016605093],"about_ca_topic_score_codex":0.00006390737,"about_ca_topic_score_gemma":0.00020135213,"teacher_disagreement_score":0.0043655853,"about_ca_system_score_codex":0.000012006395,"about_ca_system_score_gemma":0.000047693735,"threshold_uncertainty_score":0.49265134},"labels":[],"label_agreement":null},{"id":"W3109871469","doi":"10.1128/jcm.01969-20","title":"Benefits Derived from Full Laboratory Automation in Microbiology: a Tale of Four Laboratories","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Laboratory automation; Clinical microbiology; Microbiology; Automation; Biology; Engineering","score_opus":0.04061318842744029,"score_gpt":0.31356588540623415,"score_spread":0.2729526969787939,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3109871469","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971195,0.0006246432,0.00023222795,0.0010669568,0.0005965047,0.00008782171,0.000256606,0.0000060838674,0.000009691894],"genre_scores_gemma":[0.9948247,0.00014464626,0.0035411427,0.00083308044,0.0005052668,0.0000011261187,0.00013468192,0.000011223239,0.000004116747],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975329,0.00051188504,0.0015193989,0.00026081488,0.00002626188,0.00014871256],"domain_scores_gemma":[0.99797326,0.00019018787,0.0010249801,0.00017752865,0.0005370773,0.000096934695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078061345,0.00012467073,0.00053903856,0.00004506559,0.000021215299,0.0000114658515,0.0002705249,0.00038867028,0.00005336209],"category_scores_gemma":[0.0032823759,0.00011294333,0.00015597476,0.0001614464,0.00018457859,0.000011178259,0.00009252347,0.00025628912,0.000009488255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045611916,0.000096786855,0.039253764,0.000014242138,0.00006038583,0.0000027258782,0.000083744315,0.000017388093,0.9584372,0.0000102272625,0.00070767937,0.0008597308],"study_design_scores_gemma":[0.0040475433,0.0022052054,0.19513798,0.000102515434,0.00007024452,0.00005540983,0.00029109925,0.000034397515,0.774272,0.00009677122,0.023339387,0.00034744944],"about_ca_topic_score_codex":0.000008298703,"about_ca_topic_score_gemma":0.000086831715,"teacher_disagreement_score":0.18416521,"about_ca_system_score_codex":0.0000099522,"about_ca_system_score_gemma":0.00027733596,"threshold_uncertainty_score":0.46056953},"labels":[],"label_agreement":null},{"id":"W3111215819","doi":"10.1093/ofid/ofaa609","title":"Impact of Rejection of Low-Quality Wound Swabs on Antimicrobial Prescribing: A Controlled Before–After Study","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Toronto East General Hospital; University of Toronto; Humber River Regional Hospital; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"University of Toronto","keywords":"Medicine; Antimicrobial; Workload; Antibiotics; Metric (unit); Intensive care medicine; Microbiology; Operations management","score_opus":0.02057711114447327,"score_gpt":0.32173910398492084,"score_spread":0.3011619928404476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3111215819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99769944,0.000014558052,0.00005421989,0.000062716375,0.000105125095,0.001361267,0.00016276538,0.000017435792,0.0005224996],"genre_scores_gemma":[0.99952453,0.0000027509218,0.000007844882,0.00015422376,0.00006822715,0.00006227237,0.000102981954,0.000017063332,0.000060103714],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986828,0.00021610702,0.00047337782,0.00036127653,0.0001106159,0.00015580903],"domain_scores_gemma":[0.99902016,0.000024594228,0.00030037406,0.00034964943,0.00019881921,0.00010640684],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018590447,0.00015402117,0.00037905504,0.00003626942,0.00007643423,0.000086144406,0.0001991414,0.00006809836,0.00008509257],"category_scores_gemma":[0.00075082446,0.00013308736,0.00026614222,0.000123118,0.000061369625,0.000018291445,0.00019651178,0.000056400462,0.0000052472337],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004647478,0.0017374596,0.74359876,0.00005473702,0.00024655822,8.7694616e-7,0.00015730236,0.00007803126,0.24859145,0.00001691487,0.00046226714,0.0004081461],"study_design_scores_gemma":[0.0073481775,0.0047179973,0.9682139,0.00003802819,0.00011455091,0.0000015784847,0.00017674158,0.00004789598,0.019029012,0.000054109314,0.000040765844,0.00021720323],"about_ca_topic_score_codex":0.00055280427,"about_ca_topic_score_gemma":0.00026883694,"teacher_disagreement_score":0.22956245,"about_ca_system_score_codex":0.00002592651,"about_ca_system_score_gemma":0.00012460342,"threshold_uncertainty_score":0.5427145},"labels":[],"label_agreement":null},{"id":"W3112597393","doi":"10.1101/2020.11.26.20229989","title":"Application of respiratory metagenomics for COVID-19 patients on the intensive care unit to inform appropriate initial antimicrobial treatment and rapid detection of nosocomial transmission","year":2020,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"Biotechnology and Biological Sciences Research Council; King's College London; Medical Research Council; National Institute for Health and Care Research","keywords":"Outbreak; Medicine; Intensive care; Intensive care unit; Pneumonia; Antibiotics; Antibiotic resistance; Intensive care medicine; Microbiology; Virology; Internal medicine; Biology","score_opus":0.06285200318833839,"score_gpt":0.31707036452868087,"score_spread":0.2542183613403425,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3112597393","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.985055,0.000026112304,0.012323697,0.00033254703,0.00013162635,0.0018032419,0.00030664992,0.000008381097,0.000012739082],"genre_scores_gemma":[0.9983876,0.000019278154,0.00028359945,0.0005176226,0.00009885803,0.00014712328,0.00052543264,0.000017015202,0.000003491635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897105,0.000120099954,0.000393381,0.00035967532,0.00006925783,0.00008655308],"domain_scores_gemma":[0.9987016,0.000053347525,0.00031096223,0.00031865443,0.00052813184,0.000087323904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002111575,0.00016312713,0.00023416588,0.000053336666,0.000104406245,0.000016608976,0.00015113616,0.00019468986,0.0000020850885],"category_scores_gemma":[0.00056582334,0.00012986145,0.00011828089,0.00006024693,0.00006583405,0.0000021690596,0.00011517399,0.00009630469,6.2339194e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009155658,0.000039313978,0.001815652,0.00029380873,0.000055771543,4.484251e-8,0.0016986844,0.0000819131,0.9713028,0.000008195255,0.000014371497,0.02377389],"study_design_scores_gemma":[0.00095213845,0.00087629346,0.006251274,0.000022568189,0.00008034328,1.9624531e-7,0.00037474756,0.000087955865,0.98005444,0.000034916473,0.0111237895,0.0001413483],"about_ca_topic_score_codex":0.000051373572,"about_ca_topic_score_gemma":0.000042993073,"teacher_disagreement_score":0.023632541,"about_ca_system_score_codex":0.000044964378,"about_ca_system_score_gemma":0.00015298348,"threshold_uncertainty_score":0.5295596},"labels":[],"label_agreement":null},{"id":"W3112742922","doi":"10.3390/jpm10040266","title":"A Multi-mRNA Host-Response Molecular Blood Test for the Diagnosis and Prognosis of Acute Infections and Sepsis: Proceedings from a Clinical Advisory Panel","year":2020,"lang":"en","type":"article","venue":"Journal of Personalized Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Sepsis; Emergency department; Intensive care medicine; Precision medicine; Acute care; Point-of-care testing; Turnaround time; Disease; Septic shock; Acute medicine; Etiology; Infectious disease (medical specialty); Clinical decision support system; Biomarker; Point of care; Medical laboratory; Health care; Internal medicine; Immunology; Pathology","score_opus":0.07320444047757921,"score_gpt":0.34825425697986834,"score_spread":0.2750498165022891,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3112742922","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98548263,0.002590704,0.00059501466,0.010885311,0.00007656148,0.00031150266,0.000052066192,0.000004127555,0.0000020626178],"genre_scores_gemma":[0.9934105,0.0022263653,0.0029463975,0.0010050515,0.000336094,0.00003207222,0.0000074612663,0.0000130362,0.000022973221],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99897575,0.00007075176,0.00052863575,0.00020010916,0.00012838496,0.00009638176],"domain_scores_gemma":[0.9984364,0.0005209227,0.00041703886,0.00007202859,0.0003934607,0.00016013902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082410866,0.00011142171,0.00030293316,0.000034143264,0.00006922593,0.00001952055,0.00010730028,0.00009343199,0.000018072407],"category_scores_gemma":[0.006650298,0.000074445095,0.00012506635,0.00008649494,0.0002829726,0.000009120167,0.00004679079,0.00013586825,1.3730431e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007590838,0.00019894604,0.11998602,0.000045616358,0.00042376175,0.0000030353106,0.00089031376,1.1056193e-7,0.8764002,0.0000022816218,0.0006777545,0.00061287935],"study_design_scores_gemma":[0.021470018,0.012148705,0.81132525,0.00063499814,0.0054486147,0.00020638198,0.004276315,0.0010456893,0.12553558,0.00003872667,0.017473169,0.00039654746],"about_ca_topic_score_codex":0.000014292234,"about_ca_topic_score_gemma":0.0000035540468,"teacher_disagreement_score":0.7508646,"about_ca_system_score_codex":0.0000039571114,"about_ca_system_score_gemma":0.00006854544,"threshold_uncertainty_score":0.7961508},"labels":[],"label_agreement":null},{"id":"W3113332842","doi":"10.1371/journal.ppat.1009056","title":"Strain diversity in the microbiome: Lessons from Bacteroides fragilis","year":2020,"lang":"en","type":"review","venue":"PLoS Pathogens","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; Canadian Institute for Advanced Research","keywords":"Bacteroides fragilis; Microbiome; Strain (injury); Bacteroidaceae; Biology; Diversity (politics); Bacteroides; Microbiology; Computational biology; Evolutionary biology; Genetics; Bacteria; Anatomy; Sociology; Antibiotics","score_opus":0.11191548572495502,"score_gpt":0.3225129866848072,"score_spread":0.2105975009598522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3113332842","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02175734,0.9706496,0.000024131668,0.00031796988,0.00021086188,0.0007740363,0.0060736644,0.000029734027,0.00016269172],"genre_scores_gemma":[0.0050174077,0.988069,0.0002978296,0.00022817674,0.00041534228,0.00003964499,0.0058171623,0.000037510996,0.00007794425],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981432,0.00048610906,0.00039133325,0.0006373266,0.0001219422,0.00022009738],"domain_scores_gemma":[0.9989923,0.0000801817,0.00019591552,0.0006221729,0.000041751216,0.00006766452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002491826,0.00029067407,0.00058822427,0.00004890971,0.00015633866,0.00008801599,0.0007150146,0.0003287953,0.000079895646],"category_scores_gemma":[0.00031333347,0.00022783056,0.00032895282,0.00020020719,0.00006636022,0.0000034981529,0.00050182483,0.00028060467,0.00007821185],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015393702,0.0004198573,0.0007353165,0.0024448212,0.00038839385,0.00008276055,0.0012587841,1.4639637e-7,0.3402839,0.000028736222,0.0018223273,0.6525196],"study_design_scores_gemma":[0.00013443333,0.000036005607,0.00090666406,0.0006646831,0.0003505041,0.000008373276,0.0001511925,0.0000016314018,0.00022382205,0.000027709268,0.9971268,0.0003681643],"about_ca_topic_score_codex":0.00005546594,"about_ca_topic_score_gemma":0.0001541608,"teacher_disagreement_score":0.99530447,"about_ca_system_score_codex":0.00003313055,"about_ca_system_score_gemma":0.00011544756,"threshold_uncertainty_score":0.92906606},"labels":[],"label_agreement":null},{"id":"W3113877554","doi":"10.1021/acssensors.0c02175","title":"Microfluidic Technology for Antibacterial Resistance Study and Antibiotic Susceptibility Testing: Review and Perspective","year":2020,"lang":"en","type":"review","venue":"ACS Sensors","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Microfluidics; Antibiotic resistance; Antibiotics; Nanotechnology; Risk analysis (engineering); Medicine; Intensive care medicine; Computer science; Biology; Microbiology; Materials science","score_opus":0.04581863075430684,"score_gpt":0.33720825378318425,"score_spread":0.2913896230288774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3113877554","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.028081283,0.9681397,0.0000041197704,0.00030024964,0.00013482168,0.0031162605,0.00012808993,0.000055758734,0.00003969622],"genre_scores_gemma":[0.004298038,0.99450016,0.00044081392,0.00006730093,0.00021647594,0.000046651046,0.00013314755,0.00006422885,0.00023319862],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99730873,0.0002896608,0.00067500584,0.0013521173,0.0000823279,0.00029215793],"domain_scores_gemma":[0.99833184,0.00012445307,0.0003968595,0.00067461235,0.00035881752,0.000113389535],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00049778906,0.00045990202,0.0014126136,0.000072157614,0.00018072472,0.00008293417,0.00025418968,0.0003706946,0.0000038028036],"category_scores_gemma":[0.0040914165,0.00042986168,0.00013548264,0.0003641716,0.00026233733,0.000006122962,0.00027293284,0.00022734878,0.0000048038924],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030257463,0.0013025682,0.004459964,0.22140253,0.002102846,0.0000651715,0.00076113315,1.702442e-8,0.1780043,0.00029044287,0.01349112,0.5778173],"study_design_scores_gemma":[0.0005541889,0.0006521256,0.00032459095,0.0047691604,0.0019145912,0.000086537875,0.00043856367,2.588651e-7,0.0004859779,0.000051302122,0.9899671,0.0007555767],"about_ca_topic_score_codex":0.000012707869,"about_ca_topic_score_gemma":0.000028452494,"teacher_disagreement_score":0.976476,"about_ca_system_score_codex":0.000048072845,"about_ca_system_score_gemma":0.00018159559,"threshold_uncertainty_score":0.99981534},"labels":[],"label_agreement":null},{"id":"W3118534281","doi":"10.1186/s12877-020-01984-z","title":"Burden of bloodstream infection in older persons: a population‐based study","year":2021,"lang":"en","type":"article","venue":"BMC Geriatrics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal Inland Hospital","funders":"","keywords":"Medicine; Incidence (geometry); Population; Epidemiology; Diabetes mellitus; Case fatality rate; Dementia; Stroke (engine); Confidence interval; Pediatrics; Internal medicine; Disease; Environmental health","score_opus":0.020923911543154834,"score_gpt":0.2809360935209461,"score_spread":0.2600121819777913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3118534281","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990625,0.000063493804,0.0004281097,0.00001823203,0.00015386732,0.00019228524,0.000007258017,0.000010080662,0.00006422089],"genre_scores_gemma":[0.9982266,0.000005928123,0.0012630018,0.000011523976,0.00011964551,0.0000136877825,0.00016815343,0.000008945824,0.00018253259],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991927,0.00013351625,0.00025373927,0.00024301822,0.00008581322,0.0000912125],"domain_scores_gemma":[0.9994656,0.000019003515,0.00009488073,0.00027793873,0.00011632707,0.00002626156],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002083706,0.00007263318,0.000108090484,0.00006712407,0.00003034743,0.000023105003,0.000051819596,0.00007867504,0.00004631514],"category_scores_gemma":[0.00050969387,0.00008207944,0.00005692579,0.0002923973,0.0000065464246,0.0000034869408,0.000038559054,0.000041233794,0.0000021448157],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001456958,0.00033844236,0.8951936,0.000035392954,0.0000061425985,8.726793e-7,0.00011209397,0.0003251647,0.103711784,0.0000047252533,0.000027335222,0.00022987142],"study_design_scores_gemma":[0.0008065404,0.00006721144,0.98825705,0.0000072882804,0.000020164525,0.000001448341,0.0002772272,0.0002503113,0.010106531,0.000009686901,0.00010323199,0.00009329149],"about_ca_topic_score_codex":0.0007956261,"about_ca_topic_score_gemma":0.0016445075,"teacher_disagreement_score":0.09360525,"about_ca_system_score_codex":0.000015869327,"about_ca_system_score_gemma":0.00012484689,"threshold_uncertainty_score":0.33471024},"labels":[],"label_agreement":null},{"id":"W3119558282","doi":"10.1093/ofid/ofaa439.853","title":"660. Evaluation of Qvella’s FAST-Prep™ Liquid Colony™ for Early Antimicrobial Sensitivity Testing of Positive Blood Culture by Disk Diffusion Method","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Clinical microbiology; Colony-forming unit; Medicine; Blood culture; Microbiology; Agar diffusion test; Liquid culture; Chromatography; Bacteria; Biology; Chemistry; Antibiotics; Antibacterial activity","score_opus":0.021925864068184735,"score_gpt":0.30887123070466393,"score_spread":0.2869453666364792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3119558282","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99364996,0.00007540104,0.00323199,0.00016825512,0.000075966745,0.0012540575,0.0011586805,0.000017654642,0.00036803904],"genre_scores_gemma":[0.99754584,0.000012614814,0.0012635834,0.00020586191,0.00006168454,0.000047010395,0.000804946,0.00001977924,0.000038682352],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998596,0.0003558446,0.00032135207,0.00041303717,0.00014875169,0.00016501397],"domain_scores_gemma":[0.99845344,0.00008767002,0.00033381413,0.00021128192,0.00081435323,0.000099471225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043275018,0.00015010596,0.00025644654,0.000019187772,0.0001531527,0.000064095984,0.00014572433,0.000108082306,0.000014303926],"category_scores_gemma":[0.002204307,0.00015029476,0.00012500622,0.00013533601,0.00006363585,0.00002256769,0.00025905136,0.00004867496,0.0000010424109],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004333863,0.00038577642,0.028216816,0.0000775892,0.0000867043,2.5317885e-7,0.00014257667,0.000085632724,0.967182,0.0000138697,0.0010421234,0.0023332948],"study_design_scores_gemma":[0.0021577636,0.0019957856,0.020239707,0.000075472926,0.0004974466,0.0000063132147,0.000115340226,0.0022735454,0.97211355,0.000056747853,0.00021248197,0.0002558236],"about_ca_topic_score_codex":0.00040434184,"about_ca_topic_score_gemma":0.000102615784,"teacher_disagreement_score":0.00797711,"about_ca_system_score_codex":0.000014553923,"about_ca_system_score_gemma":0.0001385092,"threshold_uncertainty_score":0.6128842},"labels":[],"label_agreement":null},{"id":"W3120312208","doi":"10.4212/cjhp.v74i1.3039","title":"Identification of Staphylococci by Polymerase Chain Reaction Directly from a Positive Blood Culture and Effect on Patient Care","year":2021,"lang":"en","type":"article","venue":"The Canadian Journal of Hospital Pharmacy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Saskatchewan Health Authority; Saskatchewan Health; University of Saskatchewan","funders":"","keywords":"Concordance; Medicine; Bacteremia; Gold standard (test); Blood culture; Polymerase chain reaction; Internal medicine; Guideline; Intensive care medicine; Emergency medicine; Antibiotics; Pathology; Microbiology; Biology","score_opus":0.003883268208922153,"score_gpt":0.22992369139336546,"score_spread":0.2260404231844433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3120312208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99601007,0.0029069446,0.0000040436944,0.00032293214,0.00030368604,0.00012349543,0.000259683,0.0000014377805,0.00006768513],"genre_scores_gemma":[0.99950445,0.000058228543,0.000009386532,0.000099357654,0.00011576754,0.0000024339856,0.00015433582,0.000008383535,0.000047683214],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992825,0.00015627696,0.0002396135,0.00013706661,0.00009046939,0.00009412362],"domain_scores_gemma":[0.9991676,0.000021023157,0.00024631567,0.00013747824,0.00028554854,0.00014198557],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012595196,0.00008556052,0.00010399679,0.000028124154,0.00011966796,0.00005677313,0.00008466198,0.000037341448,0.0000102007125],"category_scores_gemma":[0.0001835992,0.000068179485,0.00006617204,0.00006237794,0.000055075725,0.000010143611,0.00001127152,0.000112259244,7.2361786e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004900844,0.000034192406,0.0027517248,0.000008006667,0.00007701259,0.000009811251,0.0012341596,0.00000123058,0.9909267,0.000005790023,0.0003479366,0.0045544556],"study_design_scores_gemma":[0.0005056229,0.0005640231,0.0073639764,0.000030268238,0.00007271089,0.0000113291035,0.00048048917,0.0000028412112,0.990087,0.000013761184,0.0007925828,0.000075449316],"about_ca_topic_score_codex":0.002969233,"about_ca_topic_score_gemma":0.0021497868,"teacher_disagreement_score":0.0046122517,"about_ca_system_score_codex":0.000030369207,"about_ca_system_score_gemma":0.00018623851,"threshold_uncertainty_score":0.4488612},"labels":[],"label_agreement":null},{"id":"W3123897428","doi":"10.1093/bib/bbaa403","title":"Oxford nanopore sequencing in clinical microbiology and infection diagnostics","year":2020,"lang":"en","type":"article","venue":"Briefings in Bioinformatics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Workflow; Nanopore sequencing; Turnaround time; Context (archaeology); Point of care; Computer science; Identification (biology); Clinical microbiology; Point-of-care testing; Software; Molecular diagnostics; Data science; DNA sequencing; Medicine; Bioinformatics; Biology; Microbiology; Database; Pathology","score_opus":0.03387400978782597,"score_gpt":0.2822925424533028,"score_spread":0.24841853266547687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3123897428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980462,0.00008353695,0.0005671068,0.00071905175,0.00010360901,0.00015152998,0.0000087700655,0.000015636273,0.00030451626],"genre_scores_gemma":[0.99052775,0.0009908149,0.004472462,0.0037843399,0.000085783744,0.00000570648,0.00010752331,0.000009570936,0.000016070573],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989592,0.000049352224,0.0006210979,0.00018010713,0.000028215165,0.00016202389],"domain_scores_gemma":[0.9995877,0.000049842776,0.00013725024,0.00012491457,0.0000368066,0.0000634932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034277656,0.000099679535,0.00015675602,0.00004016358,0.000032420052,0.000037354654,0.00007517372,0.00018994889,0.000008041786],"category_scores_gemma":[0.0018040142,0.00010622914,0.000033383418,0.00012456854,0.00008625349,0.000012375632,0.000113327194,0.00015191133,0.000006193066],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008035846,0.00009308045,0.7647367,0.00040777976,0.000025345009,0.000007912073,0.0028972316,0.000115627496,0.19427001,0.00029192696,0.0048978957,0.032176126],"study_design_scores_gemma":[0.0076444605,0.0018009566,0.5266861,0.0004676673,0.000061277526,0.0002826085,0.0016429957,0.089409284,0.03880471,0.0004088006,0.3306298,0.0021613862],"about_ca_topic_score_codex":0.000066173474,"about_ca_topic_score_gemma":0.00022977254,"teacher_disagreement_score":0.3257319,"about_ca_system_score_codex":0.000024762641,"about_ca_system_score_gemma":0.000048926548,"threshold_uncertainty_score":0.43318984},"labels":[],"label_agreement":null},{"id":"W3125602504","doi":"","title":"Evolution de la résistance bactérienne enverscertains agents antibactériens chez les chevauxdans un centre hospitalier vétérinaire.","year":2003,"lang":"en","type":"article","venue":"PubMed Central","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Molecular biology; Chemistry; Actinobacillus; Biology; Bacteria","score_opus":0.008265535308692151,"score_gpt":0.2162672994907436,"score_spread":0.20800176418205146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3125602504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939706,0.00015265732,0.0017525814,0.00011491488,0.00049105147,0.00028594732,0.000031819494,0.000047487152,0.0031529898],"genre_scores_gemma":[0.99777824,0.00008243994,0.00055390917,0.00009321598,0.00023046669,0.000026426762,0.00013521146,0.000030616622,0.0010694655],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99764884,0.0003240199,0.00026470592,0.0004898233,0.0001457695,0.0011268359],"domain_scores_gemma":[0.99902064,0.000020820355,0.00011764451,0.0003870365,0.00006750477,0.0003863472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068277254,0.00021270417,0.00014971814,0.000034232566,0.00019731444,0.00009261503,0.00019862987,0.00022971893,0.00015702617],"category_scores_gemma":[0.0008392034,0.00023204155,0.00013300829,0.00014579117,0.00017657933,0.000014764497,0.000041741543,0.00014349427,0.000011672115],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055992452,0.0003397325,0.7747268,0.000037286918,0.00007107222,0.000009813621,0.00086907484,0.000055492637,0.21798663,0.002670599,0.001603562,0.0015739613],"study_design_scores_gemma":[0.0006233512,0.00002100061,0.897739,0.000008957787,0.000027740247,0.000016602195,0.00045099392,0.00005370266,0.07766808,0.00014563877,0.022970289,0.00027467348],"about_ca_topic_score_codex":0.0000781177,"about_ca_topic_score_gemma":0.0001524051,"teacher_disagreement_score":0.14031856,"about_ca_system_score_codex":0.00024337196,"about_ca_system_score_gemma":0.00016944944,"threshold_uncertainty_score":0.946238},"labels":[],"label_agreement":null},{"id":"W3127124512","doi":"10.21203/rs.3.rs-135072/v1","title":"Rapid Antibiotic Susceptibility Testing on Pathogenic Bacteria in Solid Growth Medium Using a Real-Time and Contactless Planar Microwave Resonator Sensor","year":2021,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Ministère de la Défense Nationale; CMC Microsystems","keywords":"Resonator; Microwave; Bacteria; Antibiotics; Erythromycin; Dielectric; Agar; Materials science; Bacterial growth; Microbiology; Pathogenic bacteria; Optoelectronics; Biology; Computer science; Telecommunications","score_opus":0.07087027194277784,"score_gpt":0.3522616199072577,"score_spread":0.28139134796447984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3127124512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99767905,0.0003522228,0.0000114045815,0.00016203543,0.00021817182,0.0010465864,0.000311508,0.000037857717,0.00018117683],"genre_scores_gemma":[0.99463505,0.0004886668,0.0028532587,0.0000335342,0.00040104,0.000020320897,0.0013973066,0.0000791173,0.000091718466],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99421835,0.0019285397,0.0007500253,0.0017470986,0.000531289,0.0008247066],"domain_scores_gemma":[0.99674034,0.0004132991,0.00023723805,0.0011821303,0.0011296003,0.00029739927],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0032619603,0.00043463652,0.0006423061,0.0003099697,0.00024774054,0.00043027318,0.00040629192,0.0007697103,0.000056626654],"category_scores_gemma":[0.004930068,0.00046822705,0.0001547289,0.00036652008,0.00029314426,0.000012349539,0.0010108759,0.0010540573,0.000012093228],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020209816,0.00021021898,0.026759798,0.00086509716,0.000044522134,0.00008729859,0.00020720685,0.0000063973544,0.9708534,0.000004593621,0.00004970327,0.00070969074],"study_design_scores_gemma":[0.0013032454,0.00064168626,0.4850727,0.0024350355,0.000036385987,0.00007632432,0.0012259625,0.0015348735,0.5065075,0.00009797223,0.00006233212,0.0010059327],"about_ca_topic_score_codex":0.0011123139,"about_ca_topic_score_gemma":0.0010609127,"teacher_disagreement_score":0.46434584,"about_ca_system_score_codex":0.0002594129,"about_ca_system_score_gemma":0.00086947076,"threshold_uncertainty_score":0.99977696},"labels":[],"label_agreement":null},{"id":"W3127651263","doi":"10.12688/f1000research.39214.1","title":"A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing","year":2021,"lang":"en","type":"preprint","venue":"F1000Research","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"Joint Research Centre; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; European Commission; European Food Safety Authority","keywords":"Benchmarking; Open peer review; Plant biology; Antibiotic resistance; Antimicrobial; Computational biology; DNA sequencing; Biology; Medicine; Biotechnology; Data science; Computer science; Business; Microbiology; Genetics; Gene; Antibiotics","score_opus":0.22390894700939312,"score_gpt":0.3576194727537329,"score_spread":0.13371052574433978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3127651263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.84132934,0.0006178018,0.15593687,0.0001308251,0.00067644316,0.0012061461,0.00008182446,0.00000940553,0.000011344431],"genre_scores_gemma":[0.9778683,0.000118612224,0.017484592,0.000037074016,0.0028701995,0.00021763153,0.0010765236,0.000038126716,0.0002889242],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99826133,0.00023683356,0.00045104837,0.00060071546,0.00020374016,0.00024633642],"domain_scores_gemma":[0.9980414,0.00010471235,0.0002699388,0.0005693818,0.000976684,0.000037890703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015296604,0.00015780928,0.00019091163,0.0000797988,0.0004607969,0.00038108166,0.0002820023,0.00029692828,0.000010535906],"category_scores_gemma":[0.0010612517,0.00015133907,0.00019250986,0.00011036713,0.00008659335,0.000011336681,0.0002813797,0.00018176435,1.6926928e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009131101,0.000017095721,0.00005526517,0.00033817615,0.000052932526,1.5107896e-7,0.00022874541,0.0037681048,0.9921377,0.000007969803,0.0003912195,0.0029113789],"study_design_scores_gemma":[0.00021359639,0.00004729254,0.00021075012,0.00008830791,0.000039874172,0.0000019306276,0.00015753091,0.20186384,0.7957139,0.00001678583,0.0015006172,0.00014555741],"about_ca_topic_score_codex":0.00025097196,"about_ca_topic_score_gemma":0.0025206807,"teacher_disagreement_score":0.19809574,"about_ca_system_score_codex":0.000118762626,"about_ca_system_score_gemma":0.00042611174,"threshold_uncertainty_score":0.61714286},"labels":[],"label_agreement":null},{"id":"W3133591191","doi":"10.22037/ijpr.2020.112966.14042","title":"Multi-drug resistance of <i>Staphylococcus aureus</i> Strains in Baqiyatallah hospital: a Primary Step Towards Digital Health Biomonitoring Systems.","year":2020,"lang":"en","type":"article","venue":"PubMed","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Staphylococcus aureus; Erythromycin; Antibiotics; Microbiology; Drug resistance; Bacteria; Biology; Genetics","score_opus":0.0242310232666089,"score_gpt":0.2410850685906967,"score_spread":0.2168540453240878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3133591191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948797,0.0012572211,0.0005280369,0.0012847899,0.0003830245,0.001056046,0.00022893769,0.00004358887,0.00033861792],"genre_scores_gemma":[0.99833024,0.00004886264,0.0006159217,0.0001441216,0.00019722851,0.00019129206,0.00018998771,0.000022740041,0.000259634],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99850994,0.0000725466,0.00050150545,0.0004346781,0.0001559374,0.000325369],"domain_scores_gemma":[0.9991804,0.000010034673,0.00022137964,0.0003102292,0.00008713349,0.00019084178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032128562,0.00014806309,0.00025270195,0.000039377268,0.000037685473,0.00008616041,0.0002532612,0.000074362375,8.579935e-7],"category_scores_gemma":[0.00033015697,0.00015802892,0.0000740498,0.00019523961,0.000060519193,0.000016987986,0.00012010754,0.000090200934,0.0000014233823],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003269989,0.0010410679,0.11571443,0.002937077,0.00017043171,0.00001882491,0.002190548,0.00006636267,0.8140044,0.000054563592,0.0080041215,0.055471137],"study_design_scores_gemma":[0.0019018942,0.00009058182,0.94390774,0.000092348695,0.00000978555,9.272474e-7,0.00094230985,0.00007894319,0.027343836,0.0000040960845,0.02510779,0.0005197271],"about_ca_topic_score_codex":0.000089098976,"about_ca_topic_score_gemma":0.00009588997,"teacher_disagreement_score":0.8281933,"about_ca_system_score_codex":0.00005880481,"about_ca_system_score_gemma":0.00011839818,"threshold_uncertainty_score":0.64442325},"labels":[],"label_agreement":null},{"id":"W3133611477","doi":"10.1111/jvp.12962","title":"Diagnostic clinical microbiology","year":2021,"lang":"en","type":"article","venue":"Journal of Veterinary Pharmacology and Therapeutics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital; Saskatchewan Health Authority","funders":"","keywords":"Clinical microbiology; Turnaround time; Medical physics; Microbiology; Medicine; Data science; Biology; Computer science; Engineering; Operations management","score_opus":0.06745728782223925,"score_gpt":0.39174165091150637,"score_spread":0.3242843630892671,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3133611477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994876,0.0026390748,0.0002201801,0.000646176,0.0015175712,0.000036642283,0.0000050772333,0.0000027779004,0.000056451197],"genre_scores_gemma":[0.99296993,0.0034321898,0.0007812281,0.0020534617,0.00060253084,9.619682e-7,0.0000119799915,0.000007722176,0.000140016],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989688,0.00036964953,0.00038974115,0.00013895941,0.000022144208,0.000110714376],"domain_scores_gemma":[0.9992905,0.00017145752,0.0001872063,0.00009245955,0.00019601452,0.00006232265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004342551,0.00007730247,0.00016459067,0.000022283268,0.000053949985,0.0000134801885,0.000094036484,0.00013448992,0.00007581342],"category_scores_gemma":[0.00012182359,0.00007099799,0.0000866866,0.000036196827,0.00012797299,0.000004682979,0.00007644099,0.00016561612,0.0000031142338],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018653799,0.00016413897,0.010727859,0.00000999726,0.00017134448,0.00008071431,0.000025443971,0.0000013305287,0.98233503,0.000013117574,0.0005994129,0.0056850663],"study_design_scores_gemma":[0.002992412,0.0035417057,0.06559005,0.000023211927,0.00031273026,0.009802423,0.00013444203,0.000025673062,0.20758758,0.00021376257,0.7095089,0.00026711868],"about_ca_topic_score_codex":1.8431378e-7,"about_ca_topic_score_gemma":6.3981645e-7,"teacher_disagreement_score":0.77474743,"about_ca_system_score_codex":0.0000046974556,"about_ca_system_score_gemma":0.00009412379,"threshold_uncertainty_score":0.2895214},"labels":[],"label_agreement":null},{"id":"W3138667397","doi":"10.1371/journal.pone.0248817","title":"Local audit of empiric antibiotic therapy in bacteremia: A retrospective cohort study","year":2021,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"","keywords":"Bacteremia; Medicine; Empiric therapy; Retrospective cohort study; Odds ratio; Antibiotics; Logistic regression; Internal medicine; Blood culture; Cohort; Emergency medicine; Cohort study; Intensive care medicine; Microbiology","score_opus":0.03574309487739414,"score_gpt":0.26418201846125405,"score_spread":0.22843892358385992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3138667397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991088,0.00008667218,0.000037129248,0.00006457797,0.00003649458,0.0003147209,0.000008126543,0.0000087732005,0.00033472007],"genre_scores_gemma":[0.99923223,0.00007943908,0.00021738303,0.0000464156,0.000050023664,0.0000078316825,0.00006118238,0.000011717071,0.00029377776],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99900085,0.00012314651,0.0002458185,0.00034541477,0.00015195161,0.00013283608],"domain_scores_gemma":[0.9992587,0.000011637918,0.00007737591,0.00037947975,0.0002410792,0.00003170205],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027853154,0.00008600349,0.00023256928,0.00003195538,0.000026192905,0.000015962922,0.00009309958,0.00008310903,0.00009316649],"category_scores_gemma":[0.00028121643,0.0000900962,0.00003875171,0.00018309394,0.00004618022,0.0000032644448,0.00006644427,0.00008866051,0.000007261103],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019614701,0.0020678514,0.5027189,0.000010357725,0.00006992302,0.0000024582127,0.00005395445,4.3819682e-7,0.49491087,0.0000020682173,0.000010103438,0.00013341411],"study_design_scores_gemma":[0.0003400453,0.00022927661,0.6280157,0.000019705805,0.0000137660545,7.1060003e-7,0.00013068823,0.000010425666,0.37116534,0.000009629745,0.0000057620364,0.000058977766],"about_ca_topic_score_codex":0.00005506174,"about_ca_topic_score_gemma":0.00038970375,"teacher_disagreement_score":0.12529673,"about_ca_system_score_codex":0.000031386975,"about_ca_system_score_gemma":0.00008239865,"threshold_uncertainty_score":0.36740163},"labels":[],"label_agreement":null},{"id":"W3138896383","doi":"10.1097/pas.0000000000001699","title":"Prevalence and Predictors of Bacterial Contamination in Excisional Lymph Node Biopsies","year":2021,"lang":"en","type":"article","venue":"The American Journal of Surgical Pathology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Spinal Cord Injury BC","funders":"","keywords":"Lymph; Lymph node; Medicine; Contamination; Microbiological culture; Pathology; Biology; Bacteria","score_opus":0.01077539609745305,"score_gpt":0.2576048129279455,"score_spread":0.24682941683049248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3138896383","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989438,0.00029561645,0.000057251018,0.000457411,0.00017081096,0.000026762116,0.000009444338,0.0000011752846,0.000037750917],"genre_scores_gemma":[0.99890023,0.0005848053,0.00026587013,0.000057990233,0.00013796943,9.4536125e-7,0.000008258918,0.000004126153,0.000039827133],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989471,0.0003857615,0.00036694674,0.00012220412,0.000089751156,0.000088264154],"domain_scores_gemma":[0.99913585,0.00012566416,0.00034053324,0.00012691766,0.00023478296,0.000036255897],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006067534,0.000060411374,0.00019980351,0.00003754495,0.000022424108,0.000009334375,0.00010866615,0.000037700473,0.000032036354],"category_scores_gemma":[0.0004560108,0.000044014276,0.000051770738,0.00009633987,0.0004187642,0.0000057436514,0.000068192785,0.00006989163,4.060209e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004062142,0.00007678535,0.18129542,0.000013390965,0.000015545957,0.000062111605,0.00015091713,0.00001013337,0.8132267,0.00004393341,0.000020127045,0.004678739],"study_design_scores_gemma":[0.0007013948,0.0002636948,0.97822356,0.000030902615,0.00001597932,0.0012583729,0.00028876838,0.000012000551,0.018579576,0.00007243194,0.0004911874,0.000062107356],"about_ca_topic_score_codex":0.0000038332532,"about_ca_topic_score_gemma":0.0000029949472,"teacher_disagreement_score":0.79692817,"about_ca_system_score_codex":0.000007874913,"about_ca_system_score_gemma":0.00007635771,"threshold_uncertainty_score":0.17948501},"labels":[],"label_agreement":null},{"id":"W3152438886","doi":"10.1016/j.cmi.2021.03.006","title":"Determinants and outcomes of bloodstream infection in adults associated with one versus two sets of positive index blood cultures","year":2021,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Inland Hospital","funders":"","keywords":"Blood culture; Medicine; Confounding; Streptococcus pneumoniae; Case fatality rate; Logistic regression; Internal medicine; Population; Bloodstream infection; Bacteremia; Demography; Immunology; Epidemiology; Biology; Microbiology; Antibiotics; Environmental health","score_opus":0.017945246294037726,"score_gpt":0.32674771746707876,"score_spread":0.30880247117304105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3152438886","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99961215,0.000059922448,0.00001044642,0.00001726096,0.00014142874,0.00009442087,0.000025774663,0.0000048356383,0.000033763587],"genre_scores_gemma":[0.99943805,0.000277175,0.00005377889,0.000026410298,0.000018698995,0.0000031012182,0.00016376148,0.0000042021707,0.000014843943],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990731,0.00022895445,0.00034826188,0.0002523699,0.000014339215,0.0000830004],"domain_scores_gemma":[0.9993894,0.00012171282,0.0002058484,0.00009747739,0.00016022597,0.000025345214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002441926,0.00008166127,0.00023650238,0.000029400233,0.000031881857,0.0000052613336,0.000018480774,0.00023930059,0.000004761662],"category_scores_gemma":[0.0009831465,0.000072126495,0.000041619187,0.00007432681,0.00020218563,0.0000068976606,0.00004636922,0.000102263984,1.9334179e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023787284,0.00032752668,0.72617024,0.000016187472,0.000081485545,5.0138897e-7,0.00002212846,8.931841e-7,0.27197587,0.000004491456,0.0000017776586,0.0011610325],"study_design_scores_gemma":[0.0028002125,0.0007481299,0.88239616,0.00007662031,0.000055543616,0.00001223164,0.00001039388,0.000006057345,0.11380746,0.000012903252,0.0000066478065,0.000067644156],"about_ca_topic_score_codex":0.00020398275,"about_ca_topic_score_gemma":0.004262578,"teacher_disagreement_score":0.15816842,"about_ca_system_score_codex":0.0000042233296,"about_ca_system_score_gemma":0.000033597356,"threshold_uncertainty_score":0.2941233},"labels":[],"label_agreement":null},{"id":"W3152626649","doi":"10.1101/2021.04.09.21255220","title":"Metabolic Preference Assay for Rapid Diagnosis of Bloodstream Infections","year":2021,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Antimicrobial; Septic shock; Medicine; Antibiotics; Bloodstream infection; Antimicrobial stewardship; Timeline; Biology; Internal medicine; Intensive care medicine; Sepsis; Microbiology; Antibiotic resistance","score_opus":0.046309175778466466,"score_gpt":0.28976103290429367,"score_spread":0.2434518571258272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3152626649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949175,0.001170824,0.002288952,0.000096576136,0.0007201011,0.00040903958,0.00016765266,0.00002122093,0.00020812287],"genre_scores_gemma":[0.9952039,0.00096260547,0.0018432467,0.000033543478,0.00024966334,0.0004837034,0.00096654124,0.00002298062,0.00023379314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867487,0.00017098177,0.00038293356,0.00052692526,0.00009001561,0.00015425835],"domain_scores_gemma":[0.99848616,0.00007584129,0.0002488353,0.0007367597,0.00039024185,0.000062163206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046677128,0.00017690624,0.00030045497,0.000052363655,0.000058085974,0.000057654754,0.0002444823,0.00029431234,0.00010360989],"category_scores_gemma":[0.0017365881,0.00018603346,0.0002575891,0.0000820107,0.00005978258,0.0000026341058,0.00033102918,0.00014007036,0.0000017288627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000097293105,0.0003986717,0.311262,0.00028858968,0.00021669849,2.7994773e-7,0.000083489744,0.000039639217,0.68152833,0.000058401667,0.00032416466,0.0057900245],"study_design_scores_gemma":[0.00027783297,0.000090775306,0.12712786,0.00008485958,0.00017668978,0.00000215852,0.00005535764,0.00005204201,0.8577405,0.00011208048,0.01401402,0.00026583034],"about_ca_topic_score_codex":0.000083450985,"about_ca_topic_score_gemma":0.00022000806,"teacher_disagreement_score":0.18413414,"about_ca_system_score_codex":0.0000062681065,"about_ca_system_score_gemma":0.00017967008,"threshold_uncertainty_score":0.75862247},"labels":[],"label_agreement":null},{"id":"W3154976971","doi":"10.1099/acmi.0.000224","title":"Purposeful microbiology comment added to urine cultures with Staphylococcus aureus increases orders for follow-up blood cultures","year":2021,"lang":"en","type":"article","venue":"Access Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hamilton Health Sciences; Hamilton Regional Laboratory Medicine Program; McMaster University","funders":"","keywords":"Blood culture; Bacteremia; Staphylococcus aureus; Medicine; Urine; Internal medicine; Sepsis; Bacteriuria; Emergency medicine; Microbiology; Biology; Bacteria; Antibiotics","score_opus":0.01589003830016916,"score_gpt":0.29082000583410644,"score_spread":0.2749299675339373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3154976971","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940829,0.0006609981,0.0006483057,0.0025175216,0.00042967973,0.0008628352,0.0006688125,0.00005173991,0.000077202065],"genre_scores_gemma":[0.98017776,0.000069054804,0.003476813,0.0067014014,0.00032353512,0.0002634193,0.0077138366,0.00004526213,0.001228944],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997843,0.0002220346,0.0004270836,0.0009427854,0.00003367579,0.00053136924],"domain_scores_gemma":[0.9983726,0.000068086534,0.00018426064,0.00063410425,0.00059327827,0.00014768036],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001805289,0.0003475377,0.00041289174,0.000068124034,0.0002396559,0.00013364667,0.0005930154,0.00032315066,0.00014063898],"category_scores_gemma":[0.00047555423,0.00028627628,0.00015575474,0.0001993136,0.00016599965,0.000012733253,0.00044822728,0.00012584197,0.00001241153],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043578885,0.0002880287,0.003947712,0.00004697844,0.00030147127,0.000007304457,0.00007543273,0.000016397784,0.9539715,0.0000720423,0.040580563,0.00025677393],"study_design_scores_gemma":[0.0019778805,0.000466327,0.0010013493,0.000021675356,0.00009692656,0.00009366177,0.00016494762,7.550257e-7,0.7142004,0.000025426962,0.28158283,0.00036781866],"about_ca_topic_score_codex":0.00020982401,"about_ca_topic_score_gemma":0.002758307,"teacher_disagreement_score":0.24100226,"about_ca_system_score_codex":0.000024400832,"about_ca_system_score_gemma":0.00017181349,"threshold_uncertainty_score":0.99995893},"labels":[],"label_agreement":null},{"id":"W3157126601","doi":"10.1021/acssensors.1c00020","title":"Real-Time Respiration Changes as a Viability Indicator for Rapid Antibiotic Susceptibility Testing in a Microfluidic Chamber Array","year":2021,"lang":"en","type":"article","venue":"ACS Sensors","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"H2020 European Research Council; Social Sciences and Humanities Research Council of Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Antibiotics; Pathogen; Microbiology; Microfluidics; Bacteria; Biology; Chemistry; Materials science; Nanotechnology","score_opus":0.026290129073930982,"score_gpt":0.27765612395398764,"score_spread":0.2513659948800567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3157126601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998009,0.000116240975,0.000033566317,0.0005813114,0.00013849608,0.00058437476,0.0000388385,0.000045672106,0.00045246969],"genre_scores_gemma":[0.99662566,0.00007224033,0.0018843354,0.00020624619,0.00023341301,0.000024854595,0.00036665963,0.00003133332,0.00055524876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99794114,0.00033300903,0.00042854497,0.0008245153,0.00012506683,0.0003477414],"domain_scores_gemma":[0.99857914,0.0001611609,0.00016734848,0.0006877652,0.00030648016,0.000098090495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000913375,0.00019712502,0.00025653985,0.00006943806,0.00012902268,0.000067644934,0.00011276132,0.00023908571,0.000077713405],"category_scores_gemma":[0.004348963,0.0002171429,0.00008281939,0.00028970352,0.00010584081,0.000010233352,0.000071879665,0.00010430079,0.000042726177],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072325805,0.00014496046,0.024958873,0.00008128204,0.0000141674545,0.0000035625624,0.00017456606,0.000002577924,0.9731096,0.000008073733,0.00023654752,0.001193443],"study_design_scores_gemma":[0.000502743,0.00019683212,0.0788226,0.00003018345,0.000015669299,0.00001877589,0.00015715964,0.000043318872,0.9180462,0.000067089866,0.001862262,0.00023717547],"about_ca_topic_score_codex":0.00015591674,"about_ca_topic_score_gemma":0.0002973257,"teacher_disagreement_score":0.055063426,"about_ca_system_score_codex":0.00006189907,"about_ca_system_score_gemma":0.00021753267,"threshold_uncertainty_score":0.885483},"labels":[],"label_agreement":null},{"id":"W3157169657","doi":"10.1038/s41598-021-88423-0","title":"Evaluation of digital dispense-assisted broth microdilution antimicrobial susceptibility testing for Pseudomonas aeruginosa isolates","year":2021,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; Hospital for Sick Children; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Toronto","keywords":"Broth microdilution; Pseudomonas aeruginosa; Microbiology; Antimicrobial; Biology; Bacteria; Minimum inhibitory concentration; Genetics","score_opus":0.04885242923988055,"score_gpt":0.299252037492691,"score_spread":0.2503996082528105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3157169657","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99581647,0.000079880985,0.0010069576,0.00007161564,0.0021360926,0.0005357545,0.000045759454,0.000024866653,0.00028257832],"genre_scores_gemma":[0.9947925,7.0563436e-7,0.0030701866,0.000010169071,0.00011230811,0.00002072569,0.0014728949,0.00001526788,0.00050522824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99762505,0.0001399377,0.00069218414,0.00095269294,0.00034792555,0.0002422296],"domain_scores_gemma":[0.9954439,0.000043607994,0.0004448589,0.0008705196,0.0031266492,0.000070468406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032565445,0.00014418886,0.0001853436,0.00005465902,0.00026093866,0.0003381063,0.00010326428,0.00011525327,0.00003826262],"category_scores_gemma":[0.006404824,0.00015362524,0.0001603252,0.00032641512,0.00021897777,0.00002790349,0.00010509173,0.00005041713,0.0000031292238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018186576,0.0001748046,0.021293666,0.000049813232,0.000023450291,0.000002143846,0.00004083102,0.00003871523,0.9703444,0.0000045366505,0.0013458551,0.0066636],"study_design_scores_gemma":[0.00036934164,0.000055346947,0.019868271,0.000040281324,0.00009274738,0.0001596319,0.000067339366,0.0006194569,0.97641164,0.00089100713,0.0012282034,0.00019673473],"about_ca_topic_score_codex":0.00001664105,"about_ca_topic_score_gemma":0.00013784421,"teacher_disagreement_score":0.006466865,"about_ca_system_score_codex":0.000053334206,"about_ca_system_score_gemma":0.00068424304,"threshold_uncertainty_score":0.76676357},"labels":[],"label_agreement":null},{"id":"W3159940416","doi":"10.1111/cmi.13349","title":"<scp>HRMAn</scp> 2.0: Next‐generation artificial intelligence–driven analysis for broad host–pathogen interactions","year":2021,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Boehringer Ingelheim Fonds; Wellcome Trust; Francis Crick Institute; Medical Research Council Canada; Cancer Research UK","keywords":"Biology; Host (biology); Pathogen; Computational biology; Virology; Microbiology; Ecology","score_opus":0.05817425028167467,"score_gpt":0.28483226394966055,"score_spread":0.22665801366798588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3159940416","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8803565,0.00037178092,0.11774102,0.00015528816,0.0008162299,0.00021670526,0.0001877252,0.000025500207,0.00012925606],"genre_scores_gemma":[0.9794929,0.000046599904,0.004305822,0.00023537234,0.0007352984,0.000046428577,0.012850552,0.000022828537,0.0022641679],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983457,0.000211725,0.0004605275,0.0006552983,0.00003318863,0.00029358355],"domain_scores_gemma":[0.99883854,0.00006750923,0.00016138195,0.0004902995,0.0003659314,0.00007632113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022200632,0.00018076319,0.00025443526,0.000114090035,0.00020962546,0.000109848595,0.0001917806,0.00023128925,0.00011352417],"category_scores_gemma":[0.0005595986,0.00020126402,0.00032463286,0.000313617,0.00008867153,0.000010712379,0.00011468452,0.00010751387,0.00006505711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007382932,0.00010364356,0.0004878518,0.000010542353,0.00025659724,0.0000025180211,0.00010407289,0.00015764836,0.99675286,0.00024567827,0.0010333476,0.0008378822],"study_design_scores_gemma":[0.000076802535,0.00006580947,0.00019666356,0.0000031726956,0.00019930214,0.000018176012,0.00028587325,0.0020641768,0.93645066,0.00006127,0.060475532,0.000102569495],"about_ca_topic_score_codex":0.000013947953,"about_ca_topic_score_gemma":0.00048359815,"teacher_disagreement_score":0.113435194,"about_ca_system_score_codex":0.000029332046,"about_ca_system_score_gemma":0.00008761878,"threshold_uncertainty_score":0.8207308},"labels":[],"label_agreement":null},{"id":"W3163084129","doi":"10.1016/j.anaerobe.2021.102362","title":"Anaerobes in the microbiome","year":2021,"lang":"en","type":"editorial","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Microbiome; Metagenomics; Computational biology; Medicine; Biology; Bioinformatics; Genetics","score_opus":0.008591137632360319,"score_gpt":0.2674334328897031,"score_spread":0.2588422952573428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3163084129","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09815572,0.0022818486,0.000037246067,0.00049924554,0.89684457,0.0003788451,0.00018724333,0.00002518716,0.0015901161],"genre_scores_gemma":[0.039430678,0.0008689357,0.00037459194,0.0004906763,0.94303095,0.000053885124,0.011195575,0.000059676688,0.0044950256],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99851984,0.00022819106,0.00030885736,0.0005187812,0.00019187879,0.00023244889],"domain_scores_gemma":[0.9988558,0.00007971417,0.000110345994,0.000757658,0.00016465872,0.0000318001],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053849054,0.00019965784,0.00020313529,0.000048877027,0.00007315753,0.00015351512,0.00051595434,0.00059790525,0.000055155087],"category_scores_gemma":[0.0010137977,0.0001669256,0.0001253773,0.00018797544,0.00006145297,0.000002682852,0.00012510174,0.00033222666,0.000026659773],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000067803353,0.00004962181,0.00006606717,0.000025060232,0.000015406593,0.000007734929,0.000058801255,7.0700247e-7,0.14589123,0.000011395237,0.85357755,0.00028960622],"study_design_scores_gemma":[0.00019519095,0.00004623107,0.00049968343,0.000036458532,0.000014540325,0.0000020591572,0.0001235704,7.465135e-7,0.0038390814,0.000012908668,0.99503046,0.00019906284],"about_ca_topic_score_codex":0.00025919094,"about_ca_topic_score_gemma":0.0023679128,"teacher_disagreement_score":0.14205216,"about_ca_system_score_codex":0.000021601069,"about_ca_system_score_gemma":0.0002197153,"threshold_uncertainty_score":0.68070287},"labels":[],"label_agreement":null},{"id":"W3163263458","doi":"10.3390/life11050450","title":"Sensitivity Patterns of Bacterial Pathogens Isolated from Blood Cultures of Under-Five Children with Pneumonia and Clinical Sepsis","year":2021,"lang":"en","type":"article","venue":"Life","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"International Centre for Diarrhoeal Disease Research, Bangladesh","keywords":"Sepsis; Pneumonia; Blood culture; Medicine; Bacteremia; Imipenem; Internal medicine; Klebsiella pneumonia; Acinetobacter; Meropenem; Antibiotics; Microbiology; Pseudomonas aeruginosa; Biology; Antibiotic resistance; Bacteria","score_opus":0.013425958858719842,"score_gpt":0.2676615140039043,"score_spread":0.2542355551451845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3163263458","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989814,0.000050105777,0.00024436184,0.00009757337,0.000078952326,0.00007313198,0.0004570138,0.0000066546586,0.000010793865],"genre_scores_gemma":[0.99831426,0.00007213415,0.00059223635,0.00010795373,0.00015473015,9.444363e-7,0.0007134465,0.000009276831,0.000034988698],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99904644,0.00020736008,0.00029063152,0.00030317486,0.000066485656,0.000085874366],"domain_scores_gemma":[0.9993133,0.000040018942,0.0001591283,0.00026431112,0.00015227977,0.00007094526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012818494,0.000092107075,0.00021156787,0.000009340813,0.000028001048,0.000017831058,0.00004406347,0.00013193407,0.000031717635],"category_scores_gemma":[0.00024313095,0.00008152763,0.000064848595,0.00003968808,0.000066812616,0.0000034196323,0.00008257749,0.0000601736,5.639549e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050236464,0.000104405575,0.3453531,0.0000064734863,0.00015998061,0.0000014386535,0.000046185603,0.0000014663666,0.65407366,0.0000033413396,0.000009900063,0.00018980479],"study_design_scores_gemma":[0.0005619139,0.000130058,0.8198083,0.000019534187,0.000104498955,0.000009143479,0.000115592935,0.000014771043,0.17912228,0.0000058388323,0.000021772003,0.00008629401],"about_ca_topic_score_codex":0.00026320064,"about_ca_topic_score_gemma":0.00068523025,"teacher_disagreement_score":0.4749514,"about_ca_system_score_codex":0.0000015629867,"about_ca_system_score_gemma":0.0000666542,"threshold_uncertainty_score":0.33246002},"labels":[],"label_agreement":null},{"id":"W3164102791","doi":"10.1016/j.anaerobe.2021.102386","title":"Antimicrobial susceptibility profiles of invasive isolates of anaerobic bacteria from a large Canadian reference laboratory: 2012–2019","year":2021,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canada Research Chairs; Public Health Ontario; University of Toronto","funders":"","keywords":"Cefoxitin; Bacteroides fragilis; Microbiology; Clindamycin; Anaerobic bacteria; Piperacillin; Penicillin; Bacteroides; Clostridium perfringens; Meropenem; Piperacillin/tazobactam; Metronidazole; Peptostreptococcus; Tazobactam; Biology; Antibiotics; Medicine; Bacteria; Antibiotic resistance; Imipenem; Staphylococcus aureus","score_opus":0.013733087998445227,"score_gpt":0.23983539146719188,"score_spread":0.22610230346874666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3164102791","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971249,0.0002516828,0.000022040675,0.00012444044,0.00019143564,0.00014590625,0.0019801995,0.0000090852855,0.00015027137],"genre_scores_gemma":[0.99526244,0.00012738843,0.0016335445,0.00015162777,0.00007621848,0.000003778273,0.002559348,0.00001644971,0.00016919564],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986337,0.00017555132,0.00040793803,0.0004536651,0.000069368936,0.00025981822],"domain_scores_gemma":[0.9983506,0.000029251201,0.00020575318,0.00066498766,0.0006184256,0.00013094596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022648634,0.00015162917,0.0002705102,0.00004855131,0.000066853354,0.000028679644,0.00022008983,0.00020778467,0.0005328965],"category_scores_gemma":[0.00044289074,0.00016542028,0.00008000282,0.00020463268,0.00009995234,0.000016729651,0.00010866595,0.00008932615,0.000015790305],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026688458,0.00008949962,0.049510095,0.00003940629,0.000043101296,0.000001971219,0.00009045602,0.0000011937304,0.9473139,0.00009725955,0.0027131415,0.000073263094],"study_design_scores_gemma":[0.0003168549,0.00006276222,0.13069342,0.000042335323,0.000020983436,0.0000010317277,0.00017225722,0.0000032567596,0.8645621,0.000025270803,0.00394019,0.00015952771],"about_ca_topic_score_codex":0.025463097,"about_ca_topic_score_gemma":0.29521087,"teacher_disagreement_score":0.26974776,"about_ca_system_score_codex":0.000025063817,"about_ca_system_score_gemma":0.0008952751,"threshold_uncertainty_score":0.9810264},"labels":[],"label_agreement":null},{"id":"W3174417027","doi":"10.3390/insects12070587","title":"Discrimination between Eggs from Stink Bugs Species in Europe Using MALDI-TOF MS","year":2021,"lang":"en","type":"article","venue":"Insects","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Centre for International Agricultural Research; Agriculture and Agri-Food Canada; Ministry of Agriculture of the People's Republic of China; Department for International Development","keywords":"Biology; Pentatomidae; Zoology; Hemiptera","score_opus":0.056940597174049035,"score_gpt":0.2983080160517969,"score_spread":0.24136741887774787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174417027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99807,0.00011198371,0.00042254612,0.00012317902,0.00020648875,0.00006342268,0.000036631965,0.0000129703585,0.0009527486],"genre_scores_gemma":[0.9973335,0.000021760605,0.0010046423,0.00009225098,0.00037957513,0.0000020079729,0.0006012149,0.000014339851,0.00055067654],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991463,0.000108408414,0.0002135835,0.00031309781,0.000084252635,0.00013435683],"domain_scores_gemma":[0.99946153,0.000025493766,0.000063299645,0.0002574114,0.00015122129,0.00004104323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000119325065,0.00008969586,0.000107328015,0.00003078673,0.000049470524,0.00007177194,0.00009680055,0.00008177129,0.00008826018],"category_scores_gemma":[0.0005003966,0.00009893683,0.000029982679,0.00017448659,0.000032992175,0.000007744475,0.00009889353,0.00007191054,0.000013094664],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000063115976,0.000029431849,0.08178543,0.000009866382,0.000007230535,0.000007207077,0.00013584826,0.000008882005,0.91711086,0.000028985956,0.00006551181,0.0008044297],"study_design_scores_gemma":[0.00019813911,0.00001710341,0.58002293,0.000025830546,0.000009227562,0.0000021572048,0.000072144794,0.000054744603,0.41689608,0.000082394174,0.0025108515,0.000108384804],"about_ca_topic_score_codex":0.00030995393,"about_ca_topic_score_gemma":0.00051071885,"teacher_disagreement_score":0.50021476,"about_ca_system_score_codex":0.000020154885,"about_ca_system_score_gemma":0.00008029948,"threshold_uncertainty_score":0.40345266},"labels":[],"label_agreement":null},{"id":"W3175726254","doi":"10.1038/s41596-021-00572-8","title":"Testing physiologically relevant conditions in minimal inhibitory concentration assays","year":2021,"lang":"en","type":"review","venue":"Nature Protocols","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"CIHR Skin Research Training Centre; Canadian Institutes of Health Research; Government of Canada","keywords":"Minimum inhibitory concentration; Antimicrobial; Broth microdilution; Agar dilution; Microbiology; Bacteria; Agar Dilution Method; In vivo; Bacterial growth; Bioassay; Biology; Chemistry; Agar; Chromatography; Biotechnology","score_opus":0.06259411529225328,"score_gpt":0.3969966653660705,"score_spread":0.3344025500738172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175726254","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00060040795,0.93974584,0.000015775213,0.00002987962,0.00027021993,0.057891127,0.00015880437,0.00006008637,0.0012278669],"genre_scores_gemma":[0.0034046017,0.68756187,0.007914864,0.0005827741,0.003682017,0.28169307,0.014124031,0.00020827539,0.0008284812],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.997648,0.00049033103,0.00071136886,0.0007360313,0.00015111962,0.00026316097],"domain_scores_gemma":[0.9986639,0.00013238685,0.0004056888,0.00045613342,0.00027256348,0.00006932256],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00043896903,0.00031068962,0.0007176598,0.0000471234,0.000089063295,0.000104271465,0.00025724614,0.0012941097,0.00004099274],"category_scores_gemma":[0.0029453477,0.00027599453,0.00023615133,0.00030155177,0.0000700812,0.0000070606015,0.00013247677,0.00085224124,0.000015592024],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043951015,0.0007354981,0.0004584671,0.012906645,0.00013574265,0.00005839836,0.000035266334,0.000004040865,0.4571311,0.000583436,0.0072837262,0.52062374],"study_design_scores_gemma":[0.00031206588,0.00014288853,0.00046004614,0.008590939,0.000046517092,0.00002906741,0.00000927356,0.0000057947373,0.001032612,0.00004645981,0.9889052,0.00041912956],"about_ca_topic_score_codex":0.0000029215248,"about_ca_topic_score_gemma":0.0000138136165,"teacher_disagreement_score":0.9816215,"about_ca_system_score_codex":0.000070394424,"about_ca_system_score_gemma":0.00060251605,"threshold_uncertainty_score":0.99996924},"labels":[],"label_agreement":null},{"id":"W3175771191","doi":"10.1093/ofid/ofab321","title":"Neither Blood Culture Positivity nor Time to Positivity Is Associated With Mortality Among Patients Presenting With Severe Manifestations of Sepsis: The FABLED Cohort Study","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Coastal Health; McGill University Health Centre; Western University; London Health Sciences Centre; Lions Gate Hospital; St. Paul's Hospital; Vancouver General Hospital; Surrey Memorial Hospital; University of British Columbia; McGill University; Montreal Children's Hospital","funders":"Vancouver Coastal Health","keywords":"Medicine; Blood culture; Sepsis; Cohort; Internal medicine; Cohort study; Antibiotics","score_opus":0.006778224708632048,"score_gpt":0.2507988260826625,"score_spread":0.24402060137403048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175771191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945627,0.0000060717016,0.000021255526,0.00007256645,0.000020956468,0.0014973187,0.00042671192,0.000021950578,0.0033704615],"genre_scores_gemma":[0.99722517,8.6985625e-7,0.0000178138,0.0002524216,0.000014634221,0.00014036134,0.00062521803,0.000021830017,0.0017017078],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998588,0.00032627405,0.00021403922,0.00045444633,0.00021501575,0.00020217548],"domain_scores_gemma":[0.9985441,0.000036405636,0.00021407599,0.00048325636,0.0006265756,0.00009555977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018100753,0.0001692465,0.00021770848,0.000016728192,0.0003569055,0.00023991917,0.00019535309,0.000056393597,0.000108655004],"category_scores_gemma":[0.00029739042,0.0001221163,0.000063820335,0.00024557541,0.000060201357,0.00003925151,0.0002639708,0.00007034722,0.0000055669757],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051664712,0.0021214148,0.99106383,0.0000102577405,0.00072989915,0.000009169267,0.00017861974,0.000048080838,0.0052093053,0.000002233875,0.00054734584,0.000028152792],"study_design_scores_gemma":[0.0009442593,0.00039748946,0.9939918,0.0000308928,0.0004552546,0.000006919389,0.0002655731,0.000017203394,0.0036709188,0.00001175732,0.000020384989,0.00018757743],"about_ca_topic_score_codex":0.00073276676,"about_ca_topic_score_gemma":0.0049951077,"teacher_disagreement_score":0.0042623407,"about_ca_system_score_codex":0.000022646858,"about_ca_system_score_gemma":0.00011872627,"threshold_uncertainty_score":0.4979758},"labels":[],"label_agreement":null},{"id":"W3176533278","doi":"10.1016/j.jevs.2021.103695","title":"In vitro Validation Assessment of a Fecal Occult Blood Protein Test for Horses","year":2021,"lang":"en","type":"article","venue":"Journal of Equine Veterinary Science","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nutrasource","funders":"","keywords":"Hemoglobin; Albumin; Animal science; Predictive value; Fecal occult blood; Medicine; Feces; Internal medicine; Gastroenterology; Chemistry; Biology","score_opus":0.038998018948104646,"score_gpt":0.35788983976076305,"score_spread":0.31889182081265843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3176533278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983348,0.000034991845,0.0010939179,0.00021809126,0.00015104348,0.00010479519,0.0000108823,0.0000011067945,0.000050326504],"genre_scores_gemma":[0.9795792,0.0000064434585,0.020168616,0.000025869253,0.00009186554,0.0000038741214,0.000008336855,0.000003352567,0.00011245677],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991589,0.00004325148,0.00036285122,0.00015719514,0.00016360174,0.00011417257],"domain_scores_gemma":[0.99901384,0.000027766608,0.0002552111,0.00014522436,0.00051148253,0.000046452937],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090692303,0.000055826247,0.00011737972,0.00009404299,0.000042749707,0.000040892617,0.00018072259,0.000031623767,0.00001000823],"category_scores_gemma":[0.0013813577,0.000051084542,0.000058691756,0.0002721744,0.00009620054,0.000031888845,0.00007789286,0.00004991225,1.5524036e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005088973,0.00023887005,0.00083488965,0.000030504496,0.000004166303,0.000009998548,0.000016549693,0.000012136445,0.9984982,0.000018882318,0.000012537402,0.00027235693],"study_design_scores_gemma":[0.0004734073,0.0046461057,0.0040492145,0.00003902298,0.000007657766,0.00017538569,0.000051773313,0.0001624048,0.9898604,0.000035991106,0.0004418459,0.000056764522],"about_ca_topic_score_codex":0.0000020942614,"about_ca_topic_score_gemma":0.0000010555444,"teacher_disagreement_score":0.019074697,"about_ca_system_score_codex":0.000017508863,"about_ca_system_score_gemma":0.0004949284,"threshold_uncertainty_score":0.20831671},"labels":[],"label_agreement":null},{"id":"W3177189742","doi":"10.3390/idr13030056","title":"Use of Pulsed-Field Gel Electrophoresis to Determine the Source of Methicillin-Resistant Staphylococcus aureus Bacteremia","year":2021,"lang":"en","type":"article","venue":"Infectious Disease Reports","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"","keywords":"Pulsed-field gel electrophoresis; Bacteremia; Medicine; Staphylococcus aureus; Microbiology; Methicillin-resistant Staphylococcus aureus; Staphylococcal infections; Bacteria; Antibiotics; Biology","score_opus":0.020537595795308315,"score_gpt":0.26213378353981764,"score_spread":0.24159618774450933,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3177189742","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99780285,0.00024749807,0.0012323909,0.00018848719,0.0001646262,0.00023365606,0.000019849389,0.000017082904,0.00009354495],"genre_scores_gemma":[0.99899536,0.000048913207,0.00013331714,0.00030370138,0.00009129507,0.000023959437,0.0000560641,0.00001964396,0.00032773384],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985184,0.00015816749,0.0005556497,0.00039157819,0.00018834608,0.00018783766],"domain_scores_gemma":[0.99795014,0.00010714863,0.0003121775,0.0009311691,0.000542328,0.00015705329],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028850953,0.00014130813,0.00020508736,0.000047470305,0.000080373975,0.000047088393,0.0000883743,0.00009820344,0.000060099002],"category_scores_gemma":[0.0036482485,0.00011980817,0.00019487413,0.00021324836,0.000055154127,0.0000061372093,0.00011629836,0.000090379406,0.0000011629152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011167932,0.00013081293,0.04699231,0.00005698785,0.00007214357,0.00004815551,0.000035087483,0.00015926738,0.9500226,0.0000067444516,0.00042487468,0.0019393595],"study_design_scores_gemma":[0.00010014249,0.00014545415,0.09208711,0.000036123427,0.00009955413,0.000015269648,0.000019438687,0.000027381331,0.8976034,0.00009455116,0.009608492,0.00016310505],"about_ca_topic_score_codex":0.00033358508,"about_ca_topic_score_gemma":0.00041461864,"teacher_disagreement_score":0.052419204,"about_ca_system_score_codex":0.000021028514,"about_ca_system_score_gemma":0.0003117489,"threshold_uncertainty_score":0.48856357},"labels":[],"label_agreement":null},{"id":"W3178045503","doi":"10.1002/cpz1.194","title":"High‐Throughput Computational Analysis of Biofilm Formation from Time‐Lapse Microscopy","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Protocol (science); Visualization; Computer science; Sample (material); Scripting language; Microscopy; Artificial intelligence; Algorithm; Computer graphics (images); Biological system; Chemistry; Optics; Programming language; Biology; Pathology; Physics; Chromatography","score_opus":0.03262206056661174,"score_gpt":0.34841026585249146,"score_spread":0.3157882052858797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3178045503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.975055,0.00007398413,0.018003756,0.00007027264,0.0001248993,0.006182939,0.00041963017,0.000018165423,0.000051346735],"genre_scores_gemma":[0.95608014,0.000010088602,0.017474493,0.00009259993,0.00024256794,0.0070624356,0.018806342,0.000019067718,0.00021225102],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990393,0.00009746745,0.00036771342,0.0002782271,0.00011736723,0.00009995992],"domain_scores_gemma":[0.99912626,0.000020485018,0.00019358043,0.00031228323,0.00030712222,0.00004027405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013034575,0.000093317,0.00018733784,0.00005372099,0.000050996634,0.000053925916,0.000113145165,0.00006584047,0.00031709168],"category_scores_gemma":[0.00013293211,0.00009862451,0.00012980237,0.00029906884,0.000039823826,0.000011166877,0.00007406969,0.000046453893,0.000027703612],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030839805,0.00017171721,0.0037266621,0.000041614054,0.00012550579,2.1597734e-7,0.000047552967,0.00031438583,0.9916864,0.000072948285,0.0009646378,0.0028174876],"study_design_scores_gemma":[0.00068353035,0.00005653816,0.03474941,0.00006455306,0.00015310485,8.035391e-7,0.00002203138,0.003600177,0.9472804,0.000337972,0.012867401,0.00018408356],"about_ca_topic_score_codex":0.000012053478,"about_ca_topic_score_gemma":0.000012408285,"teacher_disagreement_score":0.044406038,"about_ca_system_score_codex":0.000014994046,"about_ca_system_score_gemma":0.00008743038,"threshold_uncertainty_score":0.40217906},"labels":[],"label_agreement":null},{"id":"W3191401219","doi":"10.1128/jcm.00973-21","title":"Identification of Staphylococcus pseudintermedius Isolates from Wound Cultures by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Improves Accuracy of Susceptibility Reporting at an Increase in Cost","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Staphylococcus pseudintermedius; Microbiology; Staphylococcus aureus; Coagulase; Staphylococcus; Antibiotics; Staphylococcal infections; Medicine; Biology; Micrococcaceae; Bacteria; Antibacterial agent; Genetics","score_opus":0.023029299890175395,"score_gpt":0.3516336188311518,"score_spread":0.3286043189409764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3191401219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99820167,0.0003500053,0.0006694705,0.00009348727,0.0002900458,0.00017025019,0.00021555099,0.0000035221433,0.000005979862],"genre_scores_gemma":[0.99688876,0.00016111895,0.0018745738,0.000031642157,0.00014695036,0.0000016662674,0.00079536985,0.000011954821,0.00008796147],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9940509,0.0007896984,0.0045425757,0.00038766096,0.00007489366,0.00015424973],"domain_scores_gemma":[0.9910846,0.00041816043,0.006867215,0.0004375988,0.0011046646,0.0000877717],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.002428227,0.00014477347,0.000718438,0.00009192176,0.00003349379,0.000019672196,0.00024538982,0.00036941728,0.00012879167],"category_scores_gemma":[0.011490647,0.00012988162,0.00028317253,0.00022396474,0.00025954618,0.00003095522,0.00010548743,0.00021590837,0.0000016779242],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005782071,0.00055142184,0.11937402,0.000050213075,0.00009593128,0.0000024883482,0.000051931576,0.000009655031,0.87850106,0.0000013246156,0.00023667171,0.00054706994],"study_design_scores_gemma":[0.0008821485,0.0003002081,0.17039463,0.000052333784,0.000056600264,0.000028271192,0.00014027383,0.000047955524,0.8277978,0.00008297083,0.00012030776,0.000096539006],"about_ca_topic_score_codex":0.000053823907,"about_ca_topic_score_gemma":0.00017823397,"teacher_disagreement_score":0.05102061,"about_ca_system_score_codex":0.000045595498,"about_ca_system_score_gemma":0.00021215962,"threshold_uncertainty_score":0.996836},"labels":[],"label_agreement":null},{"id":"W31942944","doi":"10.1093/cid/ciaa035","title":"日本の教育政策議論における「国際教育」と「国際理解教育」","year":2006,"lang":"en","type":"article","venue":"教育実践総合センター研究紀要","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Geology","score_opus":0.006340546976322398,"score_gpt":0.22231819324212182,"score_spread":0.21597764626579943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W31942944","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9775521,0.00015187805,0.0010088894,0.00029439945,0.00035395307,0.00012934982,0.000011457652,0.000062161824,0.02043581],"genre_scores_gemma":[0.988368,0.000008602861,0.0010034682,0.00026823522,0.0007131737,0.000015282325,0.00025383668,0.000021751299,0.009347674],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990071,0.00004873332,0.00024195272,0.00035703962,0.00010922434,0.00023594346],"domain_scores_gemma":[0.9993379,0.0000108232325,0.00007061116,0.00043749835,0.00008453326,0.000058648213],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019237789,0.0001295555,0.00010660412,0.00003329844,0.000105280546,0.000066291366,0.00017863793,0.00011976359,0.00019346786],"category_scores_gemma":[0.00011090248,0.00013241178,0.00008699276,0.000094691524,0.00005688619,0.0000044040235,0.0000701516,0.00006412113,0.00019472805],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019742713,0.00007194031,0.012702095,0.000009042479,0.000008976961,0.0000017643895,0.0000140951115,0.000014982919,0.9656442,0.0008089673,0.019104693,0.0015995009],"study_design_scores_gemma":[0.000809178,0.0001288559,0.14649759,0.000013424556,0.000022762473,0.000030781,0.0000760432,0.0001211025,0.30136347,0.0010443847,0.5493648,0.0005275834],"about_ca_topic_score_codex":0.00017438339,"about_ca_topic_score_gemma":0.00021823258,"teacher_disagreement_score":0.6642807,"about_ca_system_score_codex":0.000013092816,"about_ca_system_score_gemma":0.000039706032,"threshold_uncertainty_score":0.53995955},"labels":[],"label_agreement":null},{"id":"W3199856165","doi":"10.1039/d1lc00609f","title":"Bacterial classification and antibiotic susceptibility testing on an integrated microfluidic platform","year":2021,"lang":"en","type":"article","venue":"Lab on a Chip","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Society for Laboratory Automation and Screening","keywords":"Resazurin; Ciprofloxacin; Antibiotics; Microbiology; Bacteria; Serial dilution; Antibiotic resistance; Escherichia coli; Bacterial growth; Biology; Chemistry; Biochemistry; Medicine","score_opus":0.045098455059237035,"score_gpt":0.279713069103923,"score_spread":0.23461461404468598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3199856165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984297,0.000044430035,0.000045175046,0.00014810254,0.00028834873,0.00015176406,0.00003981819,0.00004825391,0.00080439524],"genre_scores_gemma":[0.9974255,0.000026656428,0.000796546,0.00032122343,0.00024116636,0.000003625175,0.0009157923,0.000021535112,0.00024798096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986417,0.00015449313,0.0002714508,0.0006353808,0.00009826982,0.00019867076],"domain_scores_gemma":[0.99900347,0.000048860544,0.00009349808,0.0005545048,0.00018706622,0.00011260114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034326105,0.00017006979,0.00014942954,0.000036900612,0.00014690493,0.00014662454,0.00011220338,0.00016591772,0.00005400726],"category_scores_gemma":[0.001101262,0.00016444492,0.00003937137,0.00016011667,0.00007713555,0.000010966959,0.00005217825,0.0001387864,0.000024202738],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012181472,0.00019526764,0.013284787,0.000022024775,0.0000100340985,0.0000022305014,0.000043871776,5.550812e-7,0.9741215,0.00020118213,0.00016813393,0.011828606],"study_design_scores_gemma":[0.000633633,0.0005082737,0.39530262,0.00005135405,0.000011880525,0.00001973806,0.00021450568,0.00016396602,0.59949654,0.000072065566,0.0032718726,0.0002535244],"about_ca_topic_score_codex":0.000030546857,"about_ca_topic_score_gemma":0.00014557909,"teacher_disagreement_score":0.38201785,"about_ca_system_score_codex":0.00003051157,"about_ca_system_score_gemma":0.00009839948,"threshold_uncertainty_score":0.67058694},"labels":[],"label_agreement":null},{"id":"W3209005116","doi":"10.1093/jac/dkab398","title":"Mathematical model of the cost-effectiveness of the BioFire FilmArray Blood Culture Identification (BCID) Panel molecular rapid diagnostic test compared with conventional methods for identification of <i>Escherichia coli</i> bloodstream infections","year":2021,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; Alberta Health Services; University of Calgary","funders":"","keywords":"Bloodstream infection; Medicine; Blood culture; Identification (biology); Cost effectiveness; Probabilistic logic; Sensitivity (control systems); Internal medicine; Statistics; Biology; Mathematics; Antibiotics; Microbiology; Risk analysis (engineering)","score_opus":0.022144143908082534,"score_gpt":0.2976339166060125,"score_spread":0.27548977269792996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3209005116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8921951,0.00010944316,0.10652652,0.00022184638,0.00015521614,0.0006235945,0.00014985137,0.0000033825236,0.000015046017],"genre_scores_gemma":[0.9894422,0.000100859506,0.010170549,0.00007171811,0.00004070666,0.000018835939,0.000059202936,0.000022660202,0.0000732171],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99821967,0.0003857212,0.0008876563,0.00021303771,0.00017656352,0.000117367024],"domain_scores_gemma":[0.9964228,0.00036737148,0.0013482124,0.00043932622,0.0013845381,0.000037742248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009451851,0.00015498261,0.00036071258,0.000036531255,0.00010335434,0.00003338606,0.0003286737,0.00013902619,0.000010902751],"category_scores_gemma":[0.001581959,0.00010654591,0.0003881543,0.0002920856,0.00025952305,0.000018620136,0.000042037074,0.00012901376,1.4085411e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001291061,0.0011586604,0.0023041447,0.00033542712,0.000258719,1.4725919e-7,0.00010642215,0.0011676666,0.9940915,0.00010521755,0.00011140812,0.00023158615],"study_design_scores_gemma":[0.0016651686,0.00012745523,0.007932887,0.0002571404,0.0002799334,0.000040780116,0.00006612085,0.0007886009,0.98838776,0.0002547014,0.00009411394,0.000105362284],"about_ca_topic_score_codex":0.000003928698,"about_ca_topic_score_gemma":0.00000438695,"teacher_disagreement_score":0.097247146,"about_ca_system_score_codex":0.000018171895,"about_ca_system_score_gemma":0.0003121462,"threshold_uncertainty_score":0.4344816},"labels":[],"label_agreement":null},{"id":"W3212522571","doi":"10.3390/antibiotics10111402","title":"Epidemiology and Pattern of Resistance of Gram-Negative Bacteria Isolated from Blood Samples in Hospitalized Patients: A Single Center Retrospective Analysis from Southern Italy","year":2021,"lang":"en","type":"article","venue":"Antibiotics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"","keywords":"Tigecycline; Acinetobacter baumannii; Medicine; Bacteremia; Trimethoprim; Klebsiella pneumoniae; Intensive care unit; Sulfamethoxazole; Colistin; Antibiotics; Antibiotic resistance; Retrospective cohort study; Blood culture; Internal medicine; Epidemiology; Microbiology; Biology; Escherichia coli; Bacteria","score_opus":0.0158041561768592,"score_gpt":0.24631975611177206,"score_spread":0.23051559993491286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3212522571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99683857,0.00013605456,0.0008636421,0.000038304424,0.00006842746,0.000092397895,0.0019350981,0.000005120916,0.00002237638],"genre_scores_gemma":[0.99484104,0.00005993784,0.0029704764,0.000049939947,0.000024591205,2.756597e-7,0.0020082104,0.000012271047,0.000033268938],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99848604,0.00027297565,0.0005718966,0.00045363285,0.00006531762,0.00015016185],"domain_scores_gemma":[0.9987756,0.00012370554,0.00038065208,0.00036916367,0.00031065088,0.000040253817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014459144,0.00013300484,0.0004777041,0.000053970194,0.000023323217,0.000010582188,0.00009723343,0.00015877745,0.00004518693],"category_scores_gemma":[0.0012052378,0.00013689854,0.000115308714,0.00024129078,0.00013926091,0.0000065059558,0.00009836032,0.000063804866,7.7111355e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043797554,0.0002364024,0.6130397,0.00000988794,0.00029578843,7.3664023e-7,0.0003371188,6.908099e-7,0.38597888,0.0000036759595,0.000004010665,0.000049315775],"study_design_scores_gemma":[0.000794984,0.0000889764,0.8385687,0.00004581498,0.00017723757,1.2758731e-7,0.00032153053,0.000034353936,0.15958332,0.00026684676,0.000006158836,0.000111976],"about_ca_topic_score_codex":0.0013281008,"about_ca_topic_score_gemma":0.0051535256,"teacher_disagreement_score":0.22639555,"about_ca_system_score_codex":0.000011937266,"about_ca_system_score_gemma":0.000022219674,"threshold_uncertainty_score":0.5582561},"labels":[],"label_agreement":null},{"id":"W3215397378","doi":"10.2139/ssrn.3962154","title":"A Robust Host-Response-Based Signature Distinguishes Bacterial and Viral Infections Across Diverse Global Populations","year":2021,"lang":"en","type":"article","venue":"SSRN Electronic Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Institute of Infection and Immunity","funders":"","keywords":"Gene signature; Biology; Transcriptome; Coinfection; Immunology; Medicine; Gene; Genetics; Gene expression; Virus","score_opus":0.01891359750434242,"score_gpt":0.2814572069551789,"score_spread":0.2625436094508365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3215397378","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932554,0.00044366004,0.005091067,0.00048595408,0.00051537115,0.000074592936,0.00007521017,0.000020942854,0.000037817255],"genre_scores_gemma":[0.9983589,0.00008444084,0.00039687543,0.00008418615,0.0004991054,0.000004076069,0.00017784195,0.000012490415,0.00038210012],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99835694,0.0002350167,0.0002259308,0.00029340028,0.00010454402,0.00078417524],"domain_scores_gemma":[0.9993464,0.000021716613,0.00011408799,0.00019283152,0.00023022463,0.00009479034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067680737,0.00013863173,0.00011878797,0.000018547466,0.00051755604,0.00021865376,0.00010496026,0.00014876112,0.00003421577],"category_scores_gemma":[0.0011402996,0.00014353995,0.00010444892,0.00013217868,0.00007294792,0.000013865742,0.000081645856,0.00043131725,0.0000033536298],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006228638,0.00024087512,0.0891914,0.000010681023,0.00011675593,0.000009839065,0.000094286755,0.00020009284,0.90273637,0.0022616067,0.00018925786,0.004326],"study_design_scores_gemma":[0.0077243885,0.0020314571,0.917361,0.000097792945,0.00025298874,0.0027300573,0.00560731,0.00062008924,0.027868612,0.013665149,0.020373348,0.0016678083],"about_ca_topic_score_codex":0.00005955576,"about_ca_topic_score_gemma":0.0038940802,"teacher_disagreement_score":0.87486774,"about_ca_system_score_codex":0.00019503364,"about_ca_system_score_gemma":0.001229308,"threshold_uncertainty_score":0.5853389},"labels":[],"label_agreement":null},{"id":"W3216117557","doi":"10.5005/jp-journals-10071-24051","title":"Blood Cultures and Molecular Diagnostics in Intensive Care Units to Diagnose Sepsis: A Bayesian Latent Class Model Analysis","year":2021,"lang":"en","type":"article","venue":"Indian Journal of Critical Care Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Medicine; Sepsis; Latent class model; Gold standard (test); Intensive care unit; Positive predicative value; Bayesian probability; Internal medicine; Statistics; Predictive value","score_opus":0.016683572658717283,"score_gpt":0.3165642680392561,"score_spread":0.2998806953805388,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3216117557","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98407507,0.0076069925,0.002453955,0.00555607,0.00013199748,0.00008739313,0.00003629107,0.000003228418,0.000048984482],"genre_scores_gemma":[0.99579895,0.00021267433,0.0011092043,0.0026086443,0.0001548422,0.000004405225,0.00009105975,0.00001239786,0.000007797085],"study_design_codex":"bench_or_experimental","study_design_gemma":"qualitative","domain_scores_codex":[0.9987004,0.00015178783,0.00046662384,0.0002610953,0.00021848881,0.00020159948],"domain_scores_gemma":[0.9956521,0.00010500805,0.00007377494,0.00021648129,0.0036073509,0.00034529855],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.00016889685,0.00014220706,0.00035163423,0.00019463111,0.000044336444,0.000037644466,0.00012730379,0.0001320407,0.000018233803],"category_scores_gemma":[0.013132611,0.00012312269,0.00008683957,0.00048593731,0.00013949568,0.000007558645,0.000074920725,0.00021536449,3.7757295e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027203775,0.00030394748,0.21237347,0.0012416476,0.0011008765,0.011618244,0.08080884,0.0024354937,0.68226993,0.0009436613,0.001508686,0.005123183],"study_design_scores_gemma":[0.008952516,0.0053174635,0.05952664,0.0028081632,0.008810275,0.0017964635,0.4541891,0.0016055033,0.45106605,0.0016324021,0.002371245,0.0019242101],"about_ca_topic_score_codex":0.000017820481,"about_ca_topic_score_gemma":0.00035290723,"teacher_disagreement_score":0.37338024,"about_ca_system_score_codex":0.000027987733,"about_ca_system_score_gemma":0.00016887252,"threshold_uncertainty_score":0.9951802},"labels":[],"label_agreement":null},{"id":"W32302276","doi":"10.1099/ijsem.0.004150","title":"城市区志的理念与编纂技术——以《鼓楼区志》为个案分析","year":2006,"lang":"en","type":"article","venue":"江苏地方志","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"Computer science","score_opus":0.006340546976322398,"score_gpt":0.22231819324212182,"score_spread":0.21597764626579943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W32302276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98389244,0.00010755168,0.00064221665,0.00020582309,0.00022448889,0.00007739245,0.000008645281,0.00003400201,0.0148074115],"genre_scores_gemma":[0.9913456,0.0000052964097,0.00068443484,0.00016930168,0.00036993832,0.000007357973,0.00018353749,0.000011507917,0.00722302],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99940586,0.00002706049,0.00014500906,0.00022283464,0.000061352366,0.00013789508],"domain_scores_gemma":[0.9995909,0.000005156549,0.000040337716,0.00027816015,0.000052360603,0.000033119053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110061716,0.00007401827,0.00006160108,0.000016945269,0.00006251073,0.000039766514,0.00009316606,0.000074194504,0.00010417587],"category_scores_gemma":[0.000065557586,0.00007553409,0.000049356306,0.000052361942,0.000034403165,0.0000022390964,0.000042592674,0.000036118203,0.00011258044],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008052922,0.00003809192,0.010577967,0.0000050621843,0.000004062283,8.067637e-7,0.0000058242226,0.0000054816132,0.97644454,0.00041276825,0.011462913,0.0010344314],"study_design_scores_gemma":[0.00045224035,0.00007793957,0.19417457,0.000007772324,0.000011137015,0.000014836971,0.00003075012,0.00006252635,0.36418197,0.0007840634,0.43990514,0.00029705855],"about_ca_topic_score_codex":0.00009456091,"about_ca_topic_score_gemma":0.00015242683,"teacher_disagreement_score":0.61226255,"about_ca_system_score_codex":0.000007001701,"about_ca_system_score_gemma":0.000022843835,"threshold_uncertainty_score":0.30801907},"labels":[],"label_agreement":null},{"id":"W4200005996","doi":"10.1093/ofid/ofab466.426","title":"224. Evaluating the Epidemiology of Bloodstream Infections: A Population-Based Study","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Medicine; Incidence (geometry); Epidemiology; Population; Demography; Bloodstream infection; Cohort; Census; Mortality rate; Cohort study; Bacteremia; Pediatrics; Internal medicine; Environmental health; Biology; Antibiotics","score_opus":0.048229295523245216,"score_gpt":0.3824961254672092,"score_spread":0.33426682994396395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200005996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99790126,0.00021085558,0.00019448753,0.00027410578,0.00022587283,0.0006328027,0.00003792265,0.000023166782,0.0004995442],"genre_scores_gemma":[0.9986115,0.0000050714125,0.00011226614,0.0004506397,0.00006537694,0.00016322445,0.0003854049,0.000015079634,0.00019141113],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998137,0.00079076836,0.00042793332,0.00037487558,0.000089728084,0.00017972042],"domain_scores_gemma":[0.9984986,0.000285158,0.00024804357,0.00062311837,0.00028335277,0.00006169418],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006173018,0.000123271,0.00022090663,0.00003051762,0.0003278152,0.00005745099,0.00022759859,0.00006196796,0.0001417129],"category_scores_gemma":[0.0054025683,0.00010205189,0.00012381206,0.000204007,0.00004443065,0.000011289243,0.0002504621,0.000064365886,0.000006817654],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002287542,0.0010061291,0.9907326,0.00001291185,0.00007144147,5.029094e-7,0.000015779862,0.00060810737,0.005474294,0.00020463917,0.00015280888,0.0016979094],"study_design_scores_gemma":[0.00085359265,0.0007738735,0.9949351,0.000019036275,0.00011635648,0.0000060765524,0.0004264683,0.00032663444,0.0012688593,0.0009657652,0.00016502355,0.00014319521],"about_ca_topic_score_codex":0.0010297858,"about_ca_topic_score_gemma":0.0021545677,"teacher_disagreement_score":0.0047852662,"about_ca_system_score_codex":0.000020859648,"about_ca_system_score_gemma":0.00024605176,"threshold_uncertainty_score":0.6467769},"labels":[],"label_agreement":null},{"id":"W4200173326","doi":"10.1016/j.diagmicrobio.2021.115614","title":"Evaluation of Revogene® Carba C assay for the rapid detection of carbapenemase genes in gram-negative pathogens","year":2021,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"GenePOC","keywords":"Gram; Microbiology; Biology; Predictive value; Gram-negative bacterial infections; Gene; Bacteria; Antibiotics; Medicine; Genetics; Internal medicine","score_opus":0.016141193752175723,"score_gpt":0.26322803532123895,"score_spread":0.24708684156906324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200173326","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99286973,0.005486378,0.0006805156,0.00004975422,0.00021815168,0.0004819968,0.0001838191,0.000003842942,0.000025795738],"genre_scores_gemma":[0.9988081,0.0006696855,0.000033772318,0.00005577321,0.000052012216,0.00012714998,0.00023832162,0.0000070931837,0.000008096085],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988402,0.00049843994,0.00025827004,0.00025542456,0.00004202159,0.00010561658],"domain_scores_gemma":[0.99844635,0.0005711646,0.00013399747,0.00022242095,0.0005893179,0.000036741978],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0009835167,0.00009025398,0.00013814784,0.000035100253,0.00007079659,0.00000677903,0.000047628964,0.00009471783,0.000023953637],"category_scores_gemma":[0.009210997,0.000078330435,0.000076938326,0.00009508951,0.00012967363,0.0000037502723,0.000040136714,0.000039661398,3.5450023e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005095576,0.00011542057,0.026249513,0.000050599967,0.000056331653,5.890474e-7,0.00006177005,0.00012897316,0.9593958,0.000021497077,0.00001729114,0.013851231],"study_design_scores_gemma":[0.0011869568,0.0001525747,0.14268503,0.0000312685,0.00036801203,0.000012629257,0.00014251756,0.0004871056,0.854046,0.00037958685,0.0003788582,0.00012948726],"about_ca_topic_score_codex":0.000043524164,"about_ca_topic_score_gemma":0.00077711017,"teacher_disagreement_score":0.11643551,"about_ca_system_score_codex":0.00001667847,"about_ca_system_score_gemma":0.00018403279,"threshold_uncertainty_score":0.99913484},"labels":[],"label_agreement":null},{"id":"W4200421804","doi":"10.2196/33746","title":"Multiplex Droplet Digital Polymerase Chain Reaction Assay for Rapid Molecular Detection of Pathogens in Patients With Sepsis: Protocol for an Assay Development Study","year":2021,"lang":"en","type":"article","venue":"JMIR Research Protocols","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Polymerase chain reaction; Digital polymerase chain reaction; Protocol (science); Multiplex polymerase chain reaction; Multiplex; Sepsis; Computational biology; Medicine; Biology; Microbiology; Bioinformatics; Immunology; Gene; Genetics; Pathology","score_opus":0.12212821664097599,"score_gpt":0.4519420394486979,"score_spread":0.32981382280772187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200421804","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.36830565,1.8066939e-7,0.001674601,0.000010430379,0.000003705988,0.6299435,0.000038730534,0.000010761925,0.000012445333],"genre_scores_gemma":[0.38106844,7.0922654e-9,0.0006911351,0.0000051498155,0.000026360072,0.61790055,0.00023382263,0.000022986022,0.000051585175],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976165,0.00057825755,0.00046196344,0.00061266095,0.00038053683,0.0003500645],"domain_scores_gemma":[0.9980455,0.000064846965,0.000158173,0.0004835848,0.0011443234,0.000103582606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017937041,0.00015755942,0.0001862409,0.00012656157,0.00014894188,0.00012785805,0.00016289741,0.00012986948,0.0000060661805],"category_scores_gemma":[0.0009879097,0.00014628102,0.00005881725,0.00026304624,0.000048895985,0.00003239411,0.000094508665,0.00012938165,9.0521723e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025662226,0.0041874405,0.027233075,0.00029505393,0.000029862462,0.0000011097119,0.00019028579,0.0000030055476,0.9309863,0.0000019653655,0.000025981477,0.034479737],"study_design_scores_gemma":[0.009515884,0.0066620577,0.090053864,0.00023543765,0.000002583347,8.100597e-7,0.0005130309,0.00013907836,0.87841827,0.000014391978,0.014178065,0.00026654272],"about_ca_topic_score_codex":0.0000096971935,"about_ca_topic_score_gemma":0.00017795525,"teacher_disagreement_score":0.06282079,"about_ca_system_score_codex":0.00007570096,"about_ca_system_score_gemma":0.00034385434,"threshold_uncertainty_score":0.5965167},"labels":[],"label_agreement":null},{"id":"W4206313532","doi":"10.1371/journal.pone.0262416","title":"Fusobacterium nucleatum and Bacteroides fragilis detection in colorectal tumours: Optimal target site and correlation with total bacterial load","year":2022,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia","funders":"St John of God Subiaco Hospital; Canada's Michael Smith Genome Sciences Centre; University of Guelph","keywords":"Fusobacterium nucleatum; Bacteroides fragilis; Colorectal cancer; Biology; Fusobacterium; Bacteroidaceae; Bacteroides; Microbiology; Pathology; Bacteria; Medicine; Cancer; Genetics; Porphyromonas gingivalis","score_opus":0.009270522069062282,"score_gpt":0.18568409007815873,"score_spread":0.17641356800909644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206313532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993633,0.000036455403,0.000041682302,0.00007338627,0.000099776575,0.00025671322,0.00005265883,0.00002260952,0.000053440028],"genre_scores_gemma":[0.9984165,0.00001015445,0.000954905,0.000025368125,0.0001189394,0.00004624856,0.000272898,0.000019962512,0.00013504659],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989952,0.00013910639,0.00018589076,0.0003701904,0.00014581697,0.00016379007],"domain_scores_gemma":[0.9996428,0.000018618035,0.00008839727,0.000120993325,0.00006768989,0.0000614964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025014198,0.00012495751,0.00015046416,0.000048406062,0.00018282037,0.00008079989,0.00004858441,0.00006919163,0.00011248916],"category_scores_gemma":[0.00012222667,0.00013682319,0.00001759432,0.00008728147,0.00006400614,0.000021875177,0.00013815773,0.00017096901,0.0000021121152],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006654278,0.00023851999,0.04941209,0.000020615373,0.000024621533,0.000002116693,0.0003414214,0.000018964076,0.9490567,0.0000013022142,0.000008196978,0.00021002816],"study_design_scores_gemma":[0.0015847124,0.0013904987,0.65836453,0.000030854266,0.000053911273,0.00006470436,0.00048120646,0.0031290909,0.33439595,0.000008734127,0.00014530684,0.00035049338],"about_ca_topic_score_codex":0.000076828976,"about_ca_topic_score_gemma":0.0001957163,"teacher_disagreement_score":0.61466074,"about_ca_system_score_codex":0.00006190544,"about_ca_system_score_gemma":0.000045877874,"threshold_uncertainty_score":0.55794877},"labels":[],"label_agreement":null},{"id":"W4206489113","doi":"10.1371/journal.pone.0262765","title":"Study protocol of associated criteria used in investigating septic transfusion reactions (STRs): A scoping review about available evidence","year":2022,"lang":"en","type":"review","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Université de Sherbrooke; Université de Montréal; Héma-Québec","funders":"Fonds de Recherche du Québec - Santé; Mitacs","keywords":"Grey literature; MEDLINE; Narrative review; Web of science; Protocol (science); Medicine; English language; Information retrieval; Computer science; Data science; Library science; Family medicine; Psychology; Alternative medicine; Meta-analysis; Intensive care medicine; Pathology; Biology","score_opus":0.34347932771790524,"score_gpt":0.4263244728419318,"score_spread":0.08284514512402658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206489113","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005896257,0.8123875,0.00000158589,0.000019696103,0.000053722924,0.1814279,0.0000357731,0.000042748423,0.00013480506],"genre_scores_gemma":[0.00006988732,0.8812134,0.00024410477,0.000027185237,0.000048507532,0.11780315,0.00022775517,0.000050293325,0.00031568098],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99566,0.0014412608,0.0015868238,0.0007061762,0.0003649081,0.000240834],"domain_scores_gemma":[0.9979313,0.00019727352,0.00093295553,0.00071618194,0.00014821031,0.00007406769],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002079632,0.00030355583,0.0013853204,0.000119824195,0.00013246125,0.000048395596,0.00036037026,0.00018925879,0.0009380152],"category_scores_gemma":[0.0054327855,0.00031518744,0.0002167125,0.00060687744,0.000050361225,0.00001600612,0.00018201875,0.00038277602,0.000014581962],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002690521,0.0073576286,0.002502279,0.78316754,0.0006312578,0.0000096084605,0.00035846123,6.1623734e-7,0.18167907,0.0000010966583,0.0002661679,0.02399937],"study_design_scores_gemma":[0.00058854115,0.0005282595,0.000131463,0.98719305,0.0011172396,0.0000038185585,0.000059918144,0.0000092371665,0.0010288173,0.0000020311377,0.008790871,0.00054677454],"about_ca_topic_score_codex":0.00013848682,"about_ca_topic_score_gemma":0.00032780142,"teacher_disagreement_score":0.20402549,"about_ca_system_score_codex":0.00011718756,"about_ca_system_score_gemma":0.00067601725,"threshold_uncertainty_score":0.99997526},"labels":[],"label_agreement":null},{"id":"W4206895250","doi":"","title":"High resolution prism based SPR imaging for the study and early detection of bacteria","year":2019,"lang":"en","type":"preprint","venue":"HAL (Le Centre pour la Communication Scientifique Directe)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut interdisciplinaire d'innovation technologique; Université de Sherbrooke","funders":"","keywords":"Prism; Resolution (logic); Optics; Image resolution; Computer science; Physics; Artificial intelligence","score_opus":0.013426325215318478,"score_gpt":0.2353620072174661,"score_spread":0.22193568200214764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206895250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.84350383,0.0002935632,0.15377253,0.0009432986,0.000292223,0.0010250385,0.00003148842,0.000026815807,0.00011122084],"genre_scores_gemma":[0.99139905,0.00004676464,0.0075083505,0.000022255546,0.000036410678,0.000100951904,0.00023630454,0.00002644102,0.0006234429],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971231,0.0016197949,0.0004057017,0.0005553036,0.00014086923,0.00015519345],"domain_scores_gemma":[0.99674165,0.0004121784,0.00045433422,0.0013617809,0.0009834641,0.00004656329],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036566753,0.00017683319,0.00020305277,0.000066223045,0.00021576679,0.0001980685,0.00042311425,0.00015065116,0.00000786224],"category_scores_gemma":[0.0013506691,0.00016566674,0.000111302616,0.00008440373,0.000121989804,0.00000918098,0.00047357063,0.00017903389,0.0000013899163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008323052,0.00033433802,0.013690834,0.00015053217,0.000070665184,1.3277827e-7,0.0011799744,0.00004762732,0.95614827,0.00026370797,0.00007139583,0.027959278],"study_design_scores_gemma":[0.0015350725,0.0000064427727,0.36820257,0.00042731635,0.00015196577,0.0000025070783,0.0002676824,0.026940767,0.59813154,0.0003573213,0.0035431983,0.00043364184],"about_ca_topic_score_codex":0.0012074793,"about_ca_topic_score_gemma":0.000673306,"teacher_disagreement_score":0.35801676,"about_ca_system_score_codex":0.000026287982,"about_ca_system_score_gemma":0.00011420504,"threshold_uncertainty_score":0.6755694},"labels":[],"label_agreement":null},{"id":"W4210388838","doi":"10.1038/s41598-022-05246-3","title":"Effect of delayed entry of blood culture bottles in BACTEC automated blood culture system in the context of laboratory consolidation","year":2022,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Electricity Association; Ottawa Hospital; University of Ottawa","funders":"","keywords":"Blood culture; Incubation period; Incubation; Staphylococcus aureus; Context (archaeology); Odds ratio; Microbiology; Medicine; Staphylococcus; Bacteria; Micrococcaceae; Whole blood; Andrology; Biology; Surgery; Internal medicine; Antibiotics; Biochemistry","score_opus":0.004910307776757393,"score_gpt":0.24120333210440076,"score_spread":0.23629302432764338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210388838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99848837,0.0003446163,0.0000015542151,0.0000087429335,0.0005562326,0.00041491512,0.00006528427,0.000015074438,0.000105239626],"genre_scores_gemma":[0.99934065,0.0000039610472,0.000039297807,0.000007757208,0.0000132883215,0.00003492804,0.00045963642,0.000006085758,0.00009439878],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99808943,0.00046726567,0.0006976808,0.0003587316,0.00026774497,0.000119161174],"domain_scores_gemma":[0.99855965,0.000029382592,0.000617549,0.0005519888,0.00021943492,0.000021997821],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027097515,0.00009870951,0.00022165303,0.00008438875,0.00007923194,0.000025346086,0.00017982883,0.00008693216,0.000017325516],"category_scores_gemma":[0.00040245726,0.00007592728,0.0000698238,0.00046051244,0.00014689856,0.00000765578,0.000077629935,0.00009890533,2.875275e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045262193,0.00018318936,0.014370752,0.0001986623,0.00002880196,0.000016077409,0.0013481096,0.00004225915,0.9828455,0.000026195385,0.00084698986,0.0000482323],"study_design_scores_gemma":[0.00052895234,0.0002714217,0.0023720993,0.00005732469,0.000061635634,0.00006372441,0.0024550552,0.00007985527,0.9932124,0.00000774966,0.0008074435,0.000082364495],"about_ca_topic_score_codex":0.000079986625,"about_ca_topic_score_gemma":0.00008618249,"teacher_disagreement_score":0.0119986525,"about_ca_system_score_codex":0.000013867733,"about_ca_system_score_gemma":0.00012802977,"threshold_uncertainty_score":0.30962247},"labels":[],"label_agreement":null},{"id":"W4221014762","doi":"10.1128/jcm.02429-21","title":"Prevalence and Mortality Associated with Bloodstream Organisms: a Population-Wide Retrospective Cohort Study","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto; University Health Network; Ottawa Hospital; Institute for Clinical Evaluative Sciences; Public Health Ontario","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Odds ratio; Medicine; Population; Blood culture; Retrospective cohort study; Incidence (geometry); Internal medicine; Bacteremia; Confidence interval; Mortality rate; Cohort study; Biology; Microbiology; Antibiotics; Environmental health","score_opus":0.023788401465052067,"score_gpt":0.3290643978215874,"score_spread":0.30527599635653535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221014762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99921364,0.000052100586,0.000021090507,0.00007782959,0.00031399008,0.00025014183,0.000043790977,0.00000556305,0.00002187294],"genre_scores_gemma":[0.99936986,0.000023061919,0.000114573544,0.00016394882,0.00011675403,0.0000054371403,0.000057031553,0.000009930363,0.00013937846],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978036,0.0008514993,0.00084098766,0.00030266438,0.00007822848,0.0001229786],"domain_scores_gemma":[0.9984277,0.000165918,0.0008538192,0.0002138878,0.00027116243,0.00006751148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026378976,0.00009935478,0.00037939564,0.00003065106,0.0001335588,0.00001776067,0.00017515481,0.00009082556,0.00009990155],"category_scores_gemma":[0.0030862472,0.00008233697,0.000083063016,0.00008553735,0.00011103379,0.0000057871157,0.00014732282,0.00031202842,5.336372e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013534878,0.00058255246,0.95718807,0.0000033764666,0.00027289242,0.000005844773,0.000029961086,0.000004954779,0.041564092,0.0000032014386,0.00015923817,0.000050492556],"study_design_scores_gemma":[0.0010041803,0.0024400412,0.99569505,0.000006732834,0.00013597844,0.00008163022,0.00009890778,0.0000019337203,0.00027424525,0.000046506364,0.00012221099,0.00009260553],"about_ca_topic_score_codex":0.000026532654,"about_ca_topic_score_gemma":0.00010774815,"teacher_disagreement_score":0.041289847,"about_ca_system_score_codex":0.00003328643,"about_ca_system_score_gemma":0.00009942833,"threshold_uncertainty_score":0.36947492},"labels":[],"label_agreement":null},{"id":"W4221132144","doi":"10.1016/j.jprot.2022.104571","title":"Discovery proteomics for the detection of putative markers for eradication of infection in an experimental model of equine septic arthritis using LC-MS/MS","year":2022,"lang":"en","type":"article","venue":"Journal of Proteomics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Western College of Veterinary Medicine, University of Saskatchewan","keywords":"Synovial fluid; Septic arthritis; Proteomics; Arthritis; Immunology; Medicine; Biology; Pathology; Osteoarthritis","score_opus":0.03695729247001031,"score_gpt":0.3084727001704334,"score_spread":0.27151540770042304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221132144","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7266686,0.000055690893,0.27239883,0.00001800409,0.00008395167,0.00072135957,0.000052002946,7.4389004e-7,8.191261e-7],"genre_scores_gemma":[0.97452796,0.000023191795,0.025257098,0.000006479892,0.00005853054,0.00008441717,0.000025028372,0.000011412325,0.0000058658443],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990997,0.000083688836,0.00053878454,0.00010600248,0.00009822388,0.00007361465],"domain_scores_gemma":[0.9987524,0.000027695469,0.0008645706,0.000114265036,0.00022472563,0.000016349046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007792305,0.000065199616,0.0001547575,0.000076568045,0.00006970935,0.000012419971,0.000085851374,0.00004685901,0.0000014545006],"category_scores_gemma":[0.00020458129,0.000060838098,0.0001152374,0.000076590804,0.000056680266,0.000034971985,0.000035849826,0.000076395634,5.4138787e-9],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010482284,0.00016360935,0.00074168685,0.000050126837,0.000027198319,3.1974416e-8,0.00028911364,0.034149773,0.96298105,0.000018523227,0.0000010766539,0.0005295777],"study_design_scores_gemma":[0.0008751125,0.0014970734,0.00090597547,0.000021061705,0.000021005495,0.000008339627,0.00033505878,0.117134236,0.8788914,0.00025707454,0.0000028730756,0.00005078459],"about_ca_topic_score_codex":0.000047485537,"about_ca_topic_score_gemma":0.00003958428,"teacher_disagreement_score":0.24785937,"about_ca_system_score_codex":0.000079500125,"about_ca_system_score_gemma":0.00013826233,"threshold_uncertainty_score":0.24809057},"labels":[],"label_agreement":null},{"id":"W4223419307","doi":"10.1128/spectrum.00408-22","title":"Automated 16S Sequencing Using an R-Based Analysis Module for Bacterial Identification","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Vancouver Coastal Health","funders":"","keywords":"Identification (biology); Sanger sequencing; 16S ribosomal RNA; Computational biology; DNA sequencing; Biology; Genetics; Gene; Ecology","score_opus":0.027508259118486273,"score_gpt":0.28227992021471493,"score_spread":0.2547716610962287,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4223419307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98399395,0.000019444671,0.014451654,0.00012536082,0.0005239257,0.00031539125,0.00044600482,0.00011650437,0.000007753576],"genre_scores_gemma":[0.9880205,5.2129457e-7,0.0025753053,0.0001631366,0.00017392074,0.000057798658,0.0088583,0.000022730961,0.00012781733],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99844664,0.0002736714,0.00036326877,0.0005953597,0.000039044135,0.00028202197],"domain_scores_gemma":[0.9991568,0.000015915744,0.00021056327,0.0004964157,0.00007051491,0.000049805367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005740785,0.0001442241,0.00020117589,0.00016777037,0.00046758025,0.000058719037,0.0002648374,0.000108824504,0.0002568368],"category_scores_gemma":[0.0000721731,0.0001703724,0.00016659734,0.00030969392,0.00006557824,0.0000076079154,0.000092124414,0.00007718757,0.0000034872844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009587157,0.00008024223,0.0020245383,0.0000069686184,0.00012137803,4.8641243e-7,0.000029047658,0.00656649,0.99086374,0.000023462791,0.00015241145,0.00003534743],"study_design_scores_gemma":[0.00072528626,0.00028974414,0.0043408806,0.0000015141779,0.00024950152,0.000024334511,0.00011883669,0.09318039,0.89762604,0.000055871365,0.003045642,0.00034197388],"about_ca_topic_score_codex":0.00010604129,"about_ca_topic_score_gemma":0.00022584392,"teacher_disagreement_score":0.09323773,"about_ca_system_score_codex":0.00014538529,"about_ca_system_score_gemma":0.00016116674,"threshold_uncertainty_score":0.6947585},"labels":[],"label_agreement":null},{"id":"W4223567174","doi":"10.3390/biom12040571","title":"Bacterial Glycocalyx Integrity Impacts Tolerance of Myxococcus xanthus to Antibiotics and Oxidative-Stress Agents","year":2022,"lang":"en","type":"article","venue":"Biomolecules","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; PROTEO; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Myxococcus xanthus; Glycocalyx; Oxidative stress; Membrane integrity; Microbiology; Antibiotics; Oxidative phosphorylation; Chemistry; Biology; Cell biology; Biochemistry","score_opus":0.02287771773540183,"score_gpt":0.28943462465549297,"score_spread":0.26655690692009115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4223567174","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981716,0.00011018115,0.00045135786,0.0001767277,0.00033031657,0.00023101273,0.00039297974,0.0000142500185,0.00012156168],"genre_scores_gemma":[0.9983051,0.000022414164,0.0010959548,0.00013893927,0.000089921174,0.000003152935,0.00024761233,0.000015198371,0.00008170926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988773,0.00014286711,0.0002734698,0.00037220801,0.00014132044,0.00019286647],"domain_scores_gemma":[0.99933684,0.000014529187,0.00012038379,0.0003220378,0.00009038203,0.000115827854],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021720248,0.00013898817,0.00016858464,0.00006078438,0.00013163617,0.0000430299,0.00021659404,0.00006386698,0.00008807005],"category_scores_gemma":[0.00025053904,0.00014530001,0.000055979654,0.00016103993,0.000117132724,0.0000051708416,0.00036151262,0.0000857047,0.0000032070402],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016384575,0.00013279755,0.008845086,0.00003323588,0.00002239282,0.0000029215694,0.000167622,0.0000071914887,0.98876464,0.00006708865,0.00042265802,0.0013705285],"study_design_scores_gemma":[0.0003932238,0.00034969035,0.043555044,0.000017943828,0.0000129026575,0.0000109454995,0.0002741098,0.00006142993,0.95002615,0.000014165924,0.0050953752,0.00018901215],"about_ca_topic_score_codex":0.00012301505,"about_ca_topic_score_gemma":0.00008256035,"teacher_disagreement_score":0.038738474,"about_ca_system_score_codex":0.0000191831,"about_ca_system_score_gemma":0.000054246964,"threshold_uncertainty_score":0.5925163},"labels":[],"label_agreement":null},{"id":"W4225311763","doi":"10.1038/s41467-022-30048-6","title":"Metabolic preference assay for rapid diagnosis of bloodstream infections","year":2022,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"University of Calgary; Alberta Innovates; Canadian Institutes of Health Research; Genome Canada; International Microbiome Centre, University of Calgary; Genome Alberta","keywords":"Antimicrobial; Septic shock; Medicine; Antibiotics; Bloodstream infection; Biology; Microbiology; Intensive care medicine; Internal medicine; Sepsis","score_opus":0.039478509176883766,"score_gpt":0.3096968209461992,"score_spread":0.27021831176931543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225311763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97801816,0.012550923,0.0008405991,0.0030539532,0.0005973819,0.0011061342,0.0010435617,0.0000684819,0.0027208116],"genre_scores_gemma":[0.9934794,0.0005986631,0.0036902812,0.00014239807,0.000040766812,0.0008245964,0.0010266117,0.000010888985,0.00018641309],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99922585,0.00023599909,0.00020405505,0.00016943364,0.00007345387,0.000091185386],"domain_scores_gemma":[0.9982294,0.00016648904,0.00013103613,0.0012395318,0.00020322825,0.00003034849],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040430453,0.00006953978,0.00010061926,0.000052155978,0.00040545533,0.000014571163,0.0006222557,0.00009557043,0.00007020508],"category_scores_gemma":[0.00087041315,0.000077736535,0.000096813455,0.00019627152,0.00006638939,0.0000040277687,0.00041250806,0.0002471712,9.690409e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003791341,0.0022486397,0.14336193,0.000038571237,0.00025662087,5.1105825e-8,0.00030797106,0.000087419416,0.78741795,0.025562484,0.019511981,0.021168474],"study_design_scores_gemma":[0.00042940277,0.00019579632,0.03466401,0.0000051566667,0.00008704626,0.0000044574413,0.00021994158,0.00015548064,0.07354738,0.00028516504,0.89023143,0.00017473205],"about_ca_topic_score_codex":0.000028040546,"about_ca_topic_score_gemma":0.0002840349,"teacher_disagreement_score":0.87071943,"about_ca_system_score_codex":0.0000101087635,"about_ca_system_score_gemma":0.000074694595,"threshold_uncertainty_score":0.3170004},"labels":[],"label_agreement":null},{"id":"W4226346457","doi":"10.5281/zenodo.6403220","title":"Metabolic Preference Assay for Rapid Diagnosis of Bloodstream Infections","year":2022,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Bloodstream infection; Microbiology; Preference; Medicine; Biology; Mathematics; Statistics","score_opus":0.04747103910092092,"score_gpt":0.25795150955409785,"score_spread":0.21048047045317692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226346457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9806448,0.00026091334,0.0048647495,0.00042251934,0.00024617734,0.0009135034,0.0013082619,0.00021878921,0.011120256],"genre_scores_gemma":[0.99611986,0.00008274415,0.0002594044,0.00004645397,0.00007952624,0.0000011048105,0.0027396274,0.00025089536,0.0004203787],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99893254,0.0003190232,0.00019463619,0.00027641613,0.00012650588,0.00015088075],"domain_scores_gemma":[0.9991272,0.000021832702,0.00010605549,0.00033317812,0.00035292236,0.00005877522],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00066806993,0.000071620896,0.00009200004,0.000082168255,0.0012165115,0.000108106666,0.0004090911,0.000031737894,0.004262912],"category_scores_gemma":[0.0011763435,0.00008365405,0.00006244998,0.00022935383,0.0000633267,0.000009085879,0.00063140073,0.000085337546,0.000061159786],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009060527,0.0008635192,0.0005166822,0.00008180268,0.00012628638,4.3689403e-7,0.00047667124,0.00015810507,0.796322,0.0027901519,0.07329035,0.12528342],"study_design_scores_gemma":[0.0003443925,0.00039515476,0.0019294255,0.000003388663,0.000020322817,0.000013928383,0.00018507632,0.00006959072,0.039196093,0.00006202228,0.95768505,0.0000955741],"about_ca_topic_score_codex":0.000016005628,"about_ca_topic_score_gemma":9.235195e-7,"teacher_disagreement_score":0.8843947,"about_ca_system_score_codex":0.0000196056,"about_ca_system_score_gemma":0.000006207015,"threshold_uncertainty_score":0.9966473},"labels":[],"label_agreement":null},{"id":"W4232784656","doi":"10.3410/f.1203970.5100063","title":"Faculty Opinions recommendation of High-throughput screen for novel antimicrobials using a whole animal infection model.","year":2010,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Throughput; Antimicrobial; Animal model; Computer science; Computational biology; Medicine; Biology; Internal medicine; Microbiology; Operating system","score_opus":0.05587813504356565,"score_gpt":0.37296495924837386,"score_spread":0.3170868242048082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4232784656","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010569426,0.00009246369,0.0028480727,0.032686155,0.00077830657,0.001530017,0.9619347,0.000019859275,0.000004769487],"genre_scores_gemma":[0.00016883023,0.000069929614,0.009424142,0.0014810134,0.00051034795,0.00011403571,0.98793924,0.000032735803,0.00025974953],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969165,0.0001935159,0.0013764846,0.0007516043,0.00047475952,0.00028714095],"domain_scores_gemma":[0.9914055,0.000045893747,0.0015421488,0.0012255028,0.005625901,0.00015508909],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0013550114,0.0004083836,0.0006659727,0.00018315694,0.00027789723,0.00014624944,0.0008126815,0.0009938226,0.0000620655],"category_scores_gemma":[0.0067872074,0.0003164425,0.00053674466,0.00067819224,0.00025411905,0.000059010425,0.00041839905,0.00045732455,0.0000057577013],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003063367,0.00034340058,0.0000042376287,0.0027330506,0.00008891881,1.1956662e-8,0.000019494868,0.000002680656,0.022748,0.00006660517,0.97359633,0.0003666058],"study_design_scores_gemma":[0.00069249794,0.00013479333,0.0005623669,0.002161691,0.00016945148,0.000017512362,0.000004411579,0.00021130608,0.0018785149,0.000013726888,0.9938452,0.00030852103],"about_ca_topic_score_codex":0.00026657947,"about_ca_topic_score_gemma":0.000060117833,"teacher_disagreement_score":0.031205142,"about_ca_system_score_codex":0.000053924563,"about_ca_system_score_gemma":0.0005523164,"threshold_uncertainty_score":0.9999288},"labels":[],"label_agreement":null},{"id":"W4233779779","doi":"10.3410/f.726863495.793525768","title":"Faculty Opinions recommendation of Discovery of MRSA active antibiotics using primary sequence from the human microbiome.","year":2016,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Microbiome; Sequence (biology); Human microbiome; Antibiotics; Computational biology; Microbiology; Biology; Medicine; Bioinformatics; Genetics","score_opus":0.0495462727793331,"score_gpt":0.36155353154010916,"score_spread":0.31200725876077606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4233779779","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00042534346,0.00036350684,0.00009259791,0.025147853,0.00064243213,0.00083412096,0.97247213,0.000008706134,0.00001331421],"genre_scores_gemma":[0.0004784717,0.00022107505,0.0005435981,0.0012617726,0.0003454683,0.000010868841,0.99680626,0.000021142101,0.0003113101],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966991,0.00053749734,0.0013541136,0.00062193285,0.000558911,0.00022847315],"domain_scores_gemma":[0.992853,0.000114359405,0.001983209,0.0016210147,0.0033315176,0.000096895834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090374576,0.00036624342,0.00062830106,0.00010704154,0.00021977238,0.000101882484,0.0014433727,0.0005704146,0.00008215473],"category_scores_gemma":[0.0037888468,0.00021239824,0.00047299446,0.000666652,0.00061382126,0.000064240194,0.00064187654,0.00040841912,0.0000042735483],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014058252,0.00020276329,0.000029122268,0.0016707405,0.00014367138,4.5864713e-8,0.000047842375,4.3230095e-8,0.07091148,0.00003317742,0.92629975,0.00064727355],"study_design_scores_gemma":[0.00036066832,0.000063456704,0.0036318451,0.0058322516,0.00015137283,0.000005720116,0.000028531378,0.0000011777495,0.007861531,0.000016743466,0.9818142,0.00023247354],"about_ca_topic_score_codex":0.00016650275,"about_ca_topic_score_gemma":0.00001568338,"teacher_disagreement_score":0.06304996,"about_ca_system_score_codex":0.00008306333,"about_ca_system_score_gemma":0.00053093844,"threshold_uncertainty_score":0.86613494},"labels":[],"label_agreement":null},{"id":"W4234738756","doi":"10.21203/rs.2.14157/v2","title":"Occurrence and determinants of Klebsiella species bloodstream infection in the western interior of British Columbia, Canada","year":2019,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal Inland Hospital","funders":"","keywords":"Bloodstream infection; Klebsiella; Microbiology; Geography; Biology; Escherichia coli; Genetics","score_opus":0.04074818439715418,"score_gpt":0.3358677479217702,"score_spread":0.29511956352461605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4234738756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99840575,0.0001965432,0.0000025879156,0.000021567874,0.00013851296,0.00042576613,0.00071460236,0.0000015900274,0.00009308309],"genre_scores_gemma":[0.9988032,0.0004934334,0.000008349056,0.0000070123233,0.000037781236,0.000022266506,0.00017400875,0.0000046638884,0.00044927312],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986478,0.0003130838,0.0003048256,0.00031230776,0.00025549385,0.00016647017],"domain_scores_gemma":[0.99902225,0.00007653999,0.00013460395,0.00043010616,0.0003060429,0.00003045928],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076285674,0.00006827378,0.00019350715,0.00003757331,0.000031796488,0.00010819976,0.00024764927,0.0001373254,0.000016711445],"category_scores_gemma":[0.00049685966,0.00008652049,0.00003944207,0.00009155331,0.00015999595,0.0000028500158,0.0004516784,0.0002627053,4.4577416e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000101198175,0.000042389584,0.9742702,0.00089854776,0.0000075891426,0.0000029318662,0.00008651133,0.0000025599043,0.020846978,1.193225e-7,0.0013611433,0.0024709064],"study_design_scores_gemma":[0.00014505857,0.00012053053,0.9930239,0.00052622176,0.0000045028924,0.000009278876,0.00023115816,0.000017126322,0.0047398168,0.00000696019,0.0010913919,0.000084106534],"about_ca_topic_score_codex":0.83822656,"about_ca_topic_score_gemma":0.98562396,"teacher_disagreement_score":0.14739743,"about_ca_system_score_codex":0.000027141405,"about_ca_system_score_gemma":0.0005657806,"threshold_uncertainty_score":0.35282034},"labels":[],"label_agreement":null},{"id":"W4238240765","doi":"10.21203/rs.2.14157/v1","title":"Occurrence and determinants of Klebsiella species bloodstream infection in the western interior of British Columbia, Canada","year":2019,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal Inland Hospital","funders":"","keywords":"Bloodstream infection; Klebsiella; Geography; Biology; Microbiology; Escherichia coli; Genetics","score_opus":0.04074818439715418,"score_gpt":0.3358677479217702,"score_spread":0.29511956352461605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4238240765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99840575,0.0001965432,0.0000025879156,0.000021567874,0.00013851296,0.00042576613,0.00071460236,0.0000015900274,0.00009308309],"genre_scores_gemma":[0.9988032,0.0004934334,0.000008349056,0.0000070123233,0.000037781236,0.000022266506,0.00017400875,0.0000046638884,0.00044927312],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986478,0.0003130838,0.0003048256,0.00031230776,0.00025549385,0.00016647017],"domain_scores_gemma":[0.99902225,0.00007653999,0.00013460395,0.00043010616,0.0003060429,0.00003045928],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076285674,0.00006827378,0.00019350715,0.00003757331,0.000031796488,0.00010819976,0.00024764927,0.0001373254,0.000016711445],"category_scores_gemma":[0.00049685966,0.00008652049,0.00003944207,0.00009155331,0.00015999595,0.0000028500158,0.0004516784,0.0002627053,4.4577416e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000101198175,0.000042389584,0.9742702,0.00089854776,0.0000075891426,0.0000029318662,0.00008651133,0.0000025599043,0.020846978,1.193225e-7,0.0013611433,0.0024709064],"study_design_scores_gemma":[0.00014505857,0.00012053053,0.9930239,0.00052622176,0.0000045028924,0.000009278876,0.00023115816,0.000017126322,0.0047398168,0.00000696019,0.0010913919,0.000084106534],"about_ca_topic_score_codex":0.83822656,"about_ca_topic_score_gemma":0.98562396,"teacher_disagreement_score":0.14739743,"about_ca_system_score_codex":0.000027141405,"about_ca_system_score_gemma":0.0005657806,"threshold_uncertainty_score":0.35282034},"labels":[],"label_agreement":null},{"id":"W4239175791","doi":"10.1093/jac/dkz373","title":"Preface","year":2019,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine","score_opus":0.005836805148010053,"score_gpt":0.23466614154286244,"score_spread":0.2288293363948524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4239175791","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99801815,0.000039643637,0.00028079562,0.00062463357,0.00044052125,0.000070147544,0.0000018367797,0.0000037184072,0.0005205631],"genre_scores_gemma":[0.9954224,0.00008985403,0.0017694349,0.0009379433,0.00028901215,1.3313155e-7,0.000005415315,0.000013734653,0.0014720361],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944854,0.000027932925,0.0002514284,0.000106706786,0.000068982576,0.000096411204],"domain_scores_gemma":[0.9994299,0.0000056195718,0.0002095295,0.00016658146,0.00015000737,0.000038369857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022275157,0.00007191177,0.00012428957,0.000031247087,0.000019964837,0.000033420314,0.00016130597,0.00006975893,0.00016140727],"category_scores_gemma":[0.00003281296,0.000063703024,0.00011197249,0.000047573933,0.000019863915,0.0000064090973,0.000016318949,0.00007157057,0.000028328654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013002724,0.0000511002,0.0051752115,0.000008910298,0.00002632048,4.7099854e-7,0.000040373783,0.000011980155,0.98622197,0.000006692696,0.0073654526,0.0009614661],"study_design_scores_gemma":[0.00094900344,0.0001729049,0.006443349,0.000020286856,0.0000047702993,0.00007024515,0.000021032865,0.0000058377955,0.90995127,0.000011204266,0.08225415,0.0000959325],"about_ca_topic_score_codex":0.0000019721092,"about_ca_topic_score_gemma":0.0000012915973,"teacher_disagreement_score":0.07627071,"about_ca_system_score_codex":0.000008916615,"about_ca_system_score_gemma":0.000059969556,"threshold_uncertainty_score":0.25977337},"labels":[],"label_agreement":null},{"id":"W4239981836","doi":"10.21203/rs.2.13137/v3","title":"Antibiotic use among twelve Canadian First Nations communities: A retrospective chart review of skin and soft tissue infections","year":2020,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"Health Canada","keywords":"Soft tissue; Antibiotics; Chart; Medicine; Retrospective cohort study; Intensive care medicine; Surgery; Biology; Microbiology; Statistics","score_opus":0.06063397220818542,"score_gpt":0.36431674111154755,"score_spread":0.3036827689033621,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4239981836","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9838759,0.0053854887,0.00014899032,0.003096505,0.00025769247,0.002801125,0.0018385872,0.000039401457,0.002556339],"genre_scores_gemma":[0.98148066,0.016089775,0.00011176054,0.0000691718,0.00013015284,0.00006268177,0.0017363502,0.000026597903,0.00029284836],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982526,0.00046037824,0.00034301812,0.0004037934,0.00025711863,0.00028313004],"domain_scores_gemma":[0.99753404,0.00017490561,0.00012819184,0.0007498379,0.0011519922,0.0002610317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007996742,0.00016646532,0.00029838004,0.00026422486,0.0005074154,0.00015463155,0.00028213504,0.00026473304,0.00013734504],"category_scores_gemma":[0.0046779076,0.00018686255,0.00009412724,0.00036550793,0.00034718448,0.000010648101,0.00060976745,0.0006530092,0.000011154728],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004570832,0.0006026916,0.8516915,0.07476682,0.0006314019,0.00002111075,0.0052925614,0.000043333454,0.03461968,0.0016252217,0.028914133,0.0017458422],"study_design_scores_gemma":[0.00037989,0.0006084026,0.9171879,0.022111611,0.000085014195,0.000013550901,0.0016768872,0.00025358333,0.006590882,0.000240283,0.050160956,0.0006910347],"about_ca_topic_score_codex":0.14389205,"about_ca_topic_score_gemma":0.5855006,"teacher_disagreement_score":0.44160855,"about_ca_system_score_codex":0.00014338779,"about_ca_system_score_gemma":0.0006433827,"threshold_uncertainty_score":0.86180884},"labels":[],"label_agreement":null},{"id":"W4242093251","doi":"10.1007/978-3-642-59681-0_15","title":"Pre-clinical Microbiology — Summary II","year":2000,"lang":"en","type":"book-chapter","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Juravinski Hospital; Hamilton General Hospital","funders":"","keywords":"Clinical microbiology; Microbiology; Biology; Medicine","score_opus":0.02684440182086768,"score_gpt":0.2865978161786715,"score_spread":0.25975341435780386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4242093251","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.018227516,0.0005862509,0.000033563443,0.00018058081,0.0007471977,0.00031260253,0.00013024842,0.000059910042,0.97972214],"genre_scores_gemma":[0.008078275,0.00088703947,0.00042200624,0.00081055256,0.00093131885,0.0000050607905,0.0027129722,0.000050297782,0.98610246],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984099,0.0000470016,0.0006017453,0.0007079748,0.000038620834,0.00019470522],"domain_scores_gemma":[0.9989362,0.000022180537,0.0001575466,0.0007031116,0.00008324349,0.000097769174],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025908323,0.00026546483,0.00031361167,0.000036704878,0.000099695935,0.00002405894,0.00028266097,0.00095839094,0.004908976],"category_scores_gemma":[0.00006555102,0.00025808733,0.0002741581,0.000008737625,0.00018479307,0.0000014231535,0.00022470023,0.00024694347,0.00034813167],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034759383,0.0001843413,0.00039737212,0.0000486635,0.0003814234,0.000007085207,0.000025673546,0.0000011418106,0.5954936,0.007035275,0.35219988,0.04387795],"study_design_scores_gemma":[0.0002111077,0.0002285764,0.00021013497,0.000022946948,0.000031117714,0.00002217534,9.720279e-7,0.0000012322458,0.0013912391,0.00082642084,0.9967442,0.00030986217],"about_ca_topic_score_codex":0.000011893479,"about_ca_topic_score_gemma":0.00010729326,"teacher_disagreement_score":0.6445443,"about_ca_system_score_codex":0.000010474832,"about_ca_system_score_gemma":0.00011226591,"threshold_uncertainty_score":0.9999871},"labels":[],"label_agreement":null},{"id":"W4244260545","doi":"10.1097/00007890-200607152-02672","title":"HIGH ANTIBIOTIC RESISTANCE OF E. COLI ISOLATED FROM RENAL TRANSPLANT PATIENTS WITH URINARY TRACT INFECTION.","year":2006,"lang":"en","type":"article","venue":"Transplantation","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital","funders":"","keywords":"Urinary system; Renal transplant; Antibiotics; Medicine; Antibiotic resistance; Urology; Microbiology; Transplantation; Internal medicine; Biology","score_opus":0.0055529261336119285,"score_gpt":0.20227237196286094,"score_spread":0.196719445829249,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4244260545","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99441224,0.0000263232,0.004799967,0.000018516439,0.000078130615,0.00017295322,0.00034316807,0.000021022883,0.00012765714],"genre_scores_gemma":[0.9943701,0.00004647136,0.0007575949,0.000012203392,0.000055746565,0.0000031968598,0.004642492,0.000012630964,0.00009957805],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99924463,0.00005567109,0.00025806518,0.00023200024,0.00010694493,0.000102660786],"domain_scores_gemma":[0.99959636,0.000015701073,0.00011761454,0.0001477071,0.00009810989,0.000024510407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005706809,0.000104023755,0.00011141427,0.00003452345,0.00005768449,0.000014896417,0.00005327946,0.00008642908,0.000024783683],"category_scores_gemma":[0.0000042225715,0.00009788012,0.000036194495,0.00008704572,0.000042510976,0.000011805439,0.000001962761,0.00004698037,0.0000029272383],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012367788,0.0004945379,0.24058801,0.000077604,0.000027748023,0.0000051331062,0.00008163333,0.00015485629,0.75716645,0.000047855043,0.00004429308,0.00007512342],"study_design_scores_gemma":[0.0012053308,0.00022479182,0.8643754,0.00006988213,0.000058571444,0.0000033065317,0.000002086463,0.000014762832,0.13383271,0.00003649015,0.000064067004,0.000112576854],"about_ca_topic_score_codex":0.0007074505,"about_ca_topic_score_gemma":0.0006597153,"teacher_disagreement_score":0.6237874,"about_ca_system_score_codex":0.000008658883,"about_ca_system_score_gemma":0.000024436114,"threshold_uncertainty_score":0.39914352},"labels":[],"label_agreement":null},{"id":"W4244925783","doi":"10.1186/s12916-020-01756-x","title":"Correction to: Blood transcriptomic discrimination of bacterial and viral infections in the emergency department: a multi-cohort observational validation study","year":2020,"lang":"en","type":"article","venue":"BMC Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Rosetrees Trust; National Institute for Health and Care Research","keywords":"Medicine; Observational study; Emergency department; Cohort study; Cohort; Coronavirus disease 2019 (COVID-19); Emergency medicine; Intensive care medicine; Medical emergency; Internal medicine; Infectious disease (medical specialty); Disease; Psychiatry","score_opus":0.07053166874823835,"score_gpt":0.3202246758195106,"score_spread":0.24969300707127223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4244925783","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957586,0.000024638854,0.002619663,0.00038747507,0.0005517276,0.000610135,0.000008012598,0.0000068750396,0.000032906966],"genre_scores_gemma":[0.9990228,0.000016857826,0.00017051815,0.000075367716,0.00023361991,0.000061531435,0.00037962873,0.0000051158327,0.000034579643],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99916124,0.00015789848,0.00030680225,0.00020763575,0.00010538945,0.00006104122],"domain_scores_gemma":[0.9996866,0.000023997281,0.00007151457,0.00011331405,0.00007019463,0.000034395973],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003752689,0.00007019088,0.00009539991,0.000033181586,0.00004887696,0.000007797695,0.00006434773,0.000028663662,0.000043119915],"category_scores_gemma":[0.0009079756,0.000055526863,0.00002040075,0.00013785114,0.00002254126,0.00000883468,0.000015608499,0.00004217885,8.093114e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052350613,0.00022512207,0.41557077,0.000016850634,0.000010882337,9.730086e-8,0.0016086561,0.000014940694,0.5820429,0.000013739648,0.00024217216,0.00020157034],"study_design_scores_gemma":[0.0011352658,0.000707459,0.98898333,0.000012742714,0.00006810112,0.0000024234807,0.0010332932,0.00038091675,0.0074672666,0.000006517494,0.00014267897,0.000060021903],"about_ca_topic_score_codex":0.00013420965,"about_ca_topic_score_gemma":0.0012473654,"teacher_disagreement_score":0.5745756,"about_ca_system_score_codex":0.0000057763573,"about_ca_system_score_gemma":0.000024512767,"threshold_uncertainty_score":0.22643198},"labels":[],"label_agreement":null},{"id":"W4245163710","doi":"10.2214/ajr.09.3596","title":"Reply","year":2010,"lang":"en","type":"article","venue":"American Journal of Roentgenology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Robarts Clinical Trials","funders":"","keywords":"Medicine; Nuclear medicine; Gynecology","score_opus":0.006187466060926328,"score_gpt":0.25106074706252696,"score_spread":0.24487328100160063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4245163710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972228,0.00003027461,0.0006647418,0.0010988871,0.00064224645,0.000025680109,0.0000014016291,0.0000040952727,0.00030989212],"genre_scores_gemma":[0.9949849,0.000024478415,0.0036517193,0.000800239,0.0003758998,7.010601e-7,0.0000043436057,0.000008731754,0.00014893609],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993419,0.000061885665,0.00028383738,0.000119814045,0.000062231215,0.00013030964],"domain_scores_gemma":[0.9991254,0.000013251319,0.00035554508,0.0002285168,0.00020130201,0.00007598214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027673237,0.000062513696,0.00014009129,0.000052933592,0.00003368636,0.000012273944,0.00020679255,0.000034938024,0.00007273807],"category_scores_gemma":[0.00042698235,0.000056551955,0.00007705644,0.00007286284,0.00021661425,0.0000030134054,0.000038278566,0.00016492623,0.000010518758],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000572183,0.000033987195,0.013904633,9.914488e-7,0.000026246164,0.0000036296594,0.00003300147,0.0000017501628,0.9659332,0.00011888172,0.0011013261,0.018785132],"study_design_scores_gemma":[0.0011910038,0.004130532,0.169322,0.000009462242,0.00006270666,0.0026641008,0.00090847677,0.000015485019,0.28877968,0.0004373951,0.5321093,0.00036984414],"about_ca_topic_score_codex":0.000020384328,"about_ca_topic_score_gemma":0.000034221917,"teacher_disagreement_score":0.6771535,"about_ca_system_score_codex":0.000004238205,"about_ca_system_score_gemma":0.000071779694,"threshold_uncertainty_score":0.23061219},"labels":[],"label_agreement":null},{"id":"W4245603865","doi":"10.1016/j.ccc.2013.09.001","title":"In Memoriam","year":2013,"lang":"en","type":"article","venue":"Critical Care Clinics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Mount Sinai Hospital","funders":"","keywords":"Medicine","score_opus":0.026945819278438008,"score_gpt":0.35622627798196654,"score_spread":0.3292804587035285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4245603865","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947372,0.00018372403,0.00013560204,0.00096244656,0.0015397083,0.00012308474,0.0000048093275,0.000012682145,0.0023007155],"genre_scores_gemma":[0.9971958,0.000009092942,0.00090886664,0.0009702231,0.00058820733,0.000019743418,0.000041774074,0.000008915533,0.0002574038],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99929637,0.000053609616,0.0002219258,0.00022926922,0.000052084943,0.00014676404],"domain_scores_gemma":[0.9994021,0.000060928756,0.000013849176,0.0002529288,0.00019725047,0.000072914074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001185502,0.00006193729,0.00007995902,0.000015700703,0.000028650222,0.00004380329,0.0001036617,0.00011955448,0.00023345136],"category_scores_gemma":[0.002452298,0.00006386724,0.000045794062,0.000046761692,0.000070154376,0.0000052821383,0.00005799647,0.00008179899,0.00017821352],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000076586,0.00057601894,0.238433,0.00046963105,0.000020564896,0.000019835183,0.00088702084,0.000008888032,0.6876056,0.010340904,0.042733908,0.01882802],"study_design_scores_gemma":[0.0038518207,0.0015471989,0.40695992,0.0001312257,0.00007763594,0.000041118048,0.01048824,0.0007714949,0.10207118,0.022642763,0.44914228,0.0022751228],"about_ca_topic_score_codex":0.000013657701,"about_ca_topic_score_gemma":0.00003257571,"teacher_disagreement_score":0.58553445,"about_ca_system_score_codex":0.000006940308,"about_ca_system_score_gemma":0.00003419561,"threshold_uncertainty_score":0.2935807},"labels":[],"label_agreement":null},{"id":"W4246520144","doi":"10.21203/rs.2.13137/v1","title":"Antibiotic use among twelve Canadian First Nations communities: A retrospective chart review of skin and soft tissue infections","year":2019,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"Health Canada; Indigenous Services Canada","keywords":"Soft tissue; Antibiotics; Chart; Medicine; Intensive care medicine; Surgery; Microbiology; Biology; Statistics","score_opus":0.04640111263704205,"score_gpt":0.35829068317840423,"score_spread":0.3118895705413622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4246520144","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891783,0.004134807,0.00007696594,0.00065784913,0.00025407298,0.0022078282,0.001092289,0.000019362315,0.0023785122],"genre_scores_gemma":[0.97957253,0.017531676,0.00007268965,0.000040217412,0.00009917294,0.00005607478,0.0016569966,0.00002691672,0.00094369944],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99823695,0.00045767234,0.0003390074,0.0003925632,0.00026238034,0.0003114231],"domain_scores_gemma":[0.99711853,0.00020810528,0.00013901285,0.0009968125,0.001351577,0.00018593678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010907424,0.00016855735,0.00030345004,0.0003521543,0.00044349552,0.00015220407,0.00028434047,0.0003097436,0.00015680738],"category_scores_gemma":[0.003288178,0.00018527498,0.0000948416,0.0003004343,0.00032123853,0.000012098274,0.00056236284,0.00061354536,0.000017823617],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019720645,0.00035383174,0.9352201,0.03940258,0.00029657994,0.0000048628053,0.0018527127,0.0000643795,0.009916501,0.00058386655,0.011512313,0.0007725381],"study_design_scores_gemma":[0.00031557356,0.00042320156,0.93722135,0.02140035,0.000056860405,0.000010922357,0.0011107777,0.00019917716,0.0036975935,0.00009017703,0.034941457,0.00053256756],"about_ca_topic_score_codex":0.16548169,"about_ca_topic_score_gemma":0.5991503,"teacher_disagreement_score":0.43366858,"about_ca_system_score_codex":0.00017013037,"about_ca_system_score_gemma":0.0006903907,"threshold_uncertainty_score":0.84007543},"labels":[],"label_agreement":null},{"id":"W4246953945","doi":"10.21203/rs.2.18496/v1","title":"Comparison of Accelerate PhenoTest™ BC Kit vs. MALDI-TOF MS/VITEK®2 System for the Rapid Identification and Antimicrobial Susceptibility Testing of Gram-negative Bacilli Causing Bloodstream Infections","year":2019,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"University of Calgary","keywords":"Bacilli; Antimicrobial; Microbiology; Bloodstream infection; Identification (biology); Gram; Medicine; Biology; Bacteria","score_opus":0.10793747977592628,"score_gpt":0.3974531075132727,"score_spread":0.2895156277373464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4246953945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923499,0.0002649712,0.0032338507,0.0001765159,0.00039154247,0.002774992,0.0006965754,0.00003136618,0.000080261474],"genre_scores_gemma":[0.9976231,0.0000749071,0.001116755,0.000004270683,0.00023843937,0.00013905056,0.0006749655,0.000041350904,0.00008719989],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99646705,0.000751878,0.0010511118,0.0009262488,0.00038880526,0.00041488005],"domain_scores_gemma":[0.99386317,0.0011403377,0.00079706276,0.0012300399,0.0028762291,0.00009317957],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003102765,0.00029170935,0.0005827319,0.00018915255,0.00046490063,0.00025141885,0.00039802745,0.00042257103,0.000017737359],"category_scores_gemma":[0.0044280863,0.0002619596,0.0002062364,0.0003787029,0.00054542476,0.000017746503,0.00079307123,0.00056927226,0.0000029401315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013205808,0.00031478255,0.09512678,0.0045903446,0.00013832099,2.0416766e-7,0.00043022036,0.0010656059,0.89539844,0.000030239831,0.00017313987,0.0025998822],"study_design_scores_gemma":[0.00079192844,0.0005602762,0.109084606,0.0010308368,0.00014274464,0.0000061131814,0.0018779342,0.009373405,0.87657,0.000079346355,0.00013021979,0.00035262905],"about_ca_topic_score_codex":0.001827322,"about_ca_topic_score_gemma":0.00047909786,"teacher_disagreement_score":0.018828461,"about_ca_system_score_codex":0.00010734338,"about_ca_system_score_gemma":0.00042897154,"threshold_uncertainty_score":0.99998325},"labels":[],"label_agreement":null},{"id":"W4249852054","doi":"10.3410/f.733654775.793548887","title":"Faculty Opinions recommendation of The outer membrane is an essential load-bearing element in Gram-negative bacteria.","year":2018,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Bearing (navigation); Element (criminal law); Bacteria; Key (lock); Microbiology; Computer science; Biology; Computer security; Political science; Artificial intelligence; Genetics; Law","score_opus":0.031409515502666845,"score_gpt":0.3476516546812095,"score_spread":0.31624213917854266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4249852054","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002055886,0.00008122058,0.000014495335,0.050485525,0.0012432552,0.0011760956,0.94676155,0.000011384131,0.000020858553],"genre_scores_gemma":[0.0003659863,0.000100132915,0.0004927767,0.0027950548,0.0004846192,0.00012914132,0.99498886,0.000022553604,0.00062088436],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9959725,0.0006793289,0.0014283701,0.00078129803,0.0008369423,0.00030154752],"domain_scores_gemma":[0.9928708,0.00003813995,0.0012554505,0.001755357,0.003919547,0.00016068581],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015883151,0.00040405573,0.00055113557,0.00012878592,0.00020719077,0.00016930688,0.0015377377,0.00059370574,0.0004432627],"category_scores_gemma":[0.0048724953,0.00025968536,0.00041914638,0.00089105126,0.00036087382,0.000057941495,0.0007185706,0.00054110825,0.000013805401],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023239865,0.00032474918,0.000022914275,0.0016288563,0.00007745315,5.6148767e-8,0.00019931178,6.2636616e-8,0.00141366,0.0000180443,0.99579906,0.00049261545],"study_design_scores_gemma":[0.0005620703,0.000106105064,0.0038583505,0.002648622,0.00007690028,0.000009410677,0.000038893068,0.000009221337,0.0031518484,0.00001272051,0.98926413,0.0002617237],"about_ca_topic_score_codex":0.00018248196,"about_ca_topic_score_gemma":0.00014690335,"teacher_disagreement_score":0.048227273,"about_ca_system_score_codex":0.000099607154,"about_ca_system_score_gemma":0.0005328178,"threshold_uncertainty_score":0.9999855},"labels":[],"label_agreement":null},{"id":"W4250961725","doi":"10.3410/f.733688889.793548891","title":"Faculty Opinions recommendation of Liquid crystalline bacterial outer membranes are critical for antibiotic susceptibility.","year":2018,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Antibiotics; Membrane; Microbiology; Chemistry; Biology; Biochemistry","score_opus":0.03713832655702944,"score_gpt":0.36150154547043095,"score_spread":0.32436321891340153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4250961725","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006524476,0.0002541983,0.00012301341,0.07002434,0.0017698602,0.0015089214,0.92622125,0.00002440759,0.000008771083],"genre_scores_gemma":[0.00025193059,0.00012760473,0.0014353443,0.0018663926,0.0014375747,0.00011677758,0.9942496,0.0000375813,0.0004772042],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9955771,0.0005289726,0.0018159339,0.0010060053,0.00067846733,0.00039352936],"domain_scores_gemma":[0.98749346,0.00015637524,0.0013498432,0.0017692733,0.008968654,0.0002623774],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0017828,0.00052169827,0.0008899124,0.00017462097,0.000261405,0.00017342716,0.0013097163,0.0009702491,0.00040947014],"category_scores_gemma":[0.025249377,0.00038041628,0.0007500219,0.0006257468,0.0006516527,0.00005175933,0.00049785647,0.000422163,0.000014862432],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012819152,0.00049159734,0.0000075389667,0.0112906005,0.0001066859,8.565514e-8,0.000029781691,4.1792706e-8,0.001827834,0.000035367513,0.98591685,0.0001654431],"study_design_scores_gemma":[0.0006675135,0.00048944226,0.0006591647,0.004193723,0.00018484055,0.000018914607,0.00002329581,0.000006066936,0.0012727431,0.000011745763,0.992102,0.00037050393],"about_ca_topic_score_codex":0.00002640077,"about_ca_topic_score_gemma":0.000039950344,"teacher_disagreement_score":0.06815795,"about_ca_system_score_codex":0.000054319895,"about_ca_system_score_gemma":0.00043684617,"threshold_uncertainty_score":0.99986476},"labels":[],"label_agreement":null},{"id":"W4253108473","doi":"10.21203/rs.2.13137/v2","title":"Antibiotic use among twelve Canadian First Nations communities: A retrospective chart review of skin and soft tissue infections","year":2020,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Ottawa; BC Centre for Disease Control; University of British Columbia","funders":"Health Canada; Indigenous Services Canada","keywords":"Soft tissue; Chart; Antibiotics; Medicine; Retrospective cohort study; Surgery; Microbiology; Biology; Statistics","score_opus":0.06063397220818542,"score_gpt":0.36431674111154755,"score_spread":0.3036827689033621,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4253108473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9838759,0.0053854887,0.00014899032,0.003096505,0.00025769247,0.002801125,0.0018385872,0.000039401457,0.002556339],"genre_scores_gemma":[0.98148066,0.016089775,0.00011176054,0.0000691718,0.00013015284,0.00006268177,0.0017363502,0.000026597903,0.00029284836],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982526,0.00046037824,0.00034301812,0.0004037934,0.00025711863,0.00028313004],"domain_scores_gemma":[0.99753404,0.00017490561,0.00012819184,0.0007498379,0.0011519922,0.0002610317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007996742,0.00016646532,0.00029838004,0.00026422486,0.0005074154,0.00015463155,0.00028213504,0.00026473304,0.00013734504],"category_scores_gemma":[0.0046779076,0.00018686255,0.00009412724,0.00036550793,0.00034718448,0.000010648101,0.00060976745,0.0006530092,0.000011154728],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004570832,0.0006026916,0.8516915,0.07476682,0.0006314019,0.00002111075,0.0052925614,0.000043333454,0.03461968,0.0016252217,0.028914133,0.0017458422],"study_design_scores_gemma":[0.00037989,0.0006084026,0.9171879,0.022111611,0.000085014195,0.000013550901,0.0016768872,0.00025358333,0.006590882,0.000240283,0.050160956,0.0006910347],"about_ca_topic_score_codex":0.14389205,"about_ca_topic_score_gemma":0.5855006,"teacher_disagreement_score":0.44160855,"about_ca_system_score_codex":0.00014338779,"about_ca_system_score_gemma":0.0006433827,"threshold_uncertainty_score":0.86180884},"labels":[],"label_agreement":null},{"id":"W4253710362","doi":"10.1139/w00-122","title":"Phospholipid analogue profiles of <i>Peptostreptococcus</i>, <i>Micromonas</i>, and <i>Finegoldia</i> species analysed by fast atom bombardment mass spectrometry","year":2001,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Peptostreptococcus; Chemistry; Phosphatidylglycerol; Microbiology; Mass spectrometry; Phospholipid; Biology; Chromatography; Anaerobic bacteria; Bacteria; Biochemistry; Membrane; Phosphatidylcholine","score_opus":0.008490753126707287,"score_gpt":0.20862023629718868,"score_spread":0.2001294831704814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4253710362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995795,0.0020852613,0.00048397007,0.00051076023,0.00028477717,0.0001528647,0.00044047754,0.0000033087606,0.00024355859],"genre_scores_gemma":[0.996913,0.00042941337,0.0012233967,0.00030637722,0.00019259541,0.0000024599617,0.00036878465,0.000019088238,0.0005448869],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99850166,0.00012620309,0.00064677536,0.00030253877,0.000049750317,0.00037309257],"domain_scores_gemma":[0.9986348,0.000024888514,0.0004506259,0.00027603164,0.00027981025,0.00033383764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034424898,0.0002035991,0.00039831747,0.00020954786,0.00007916612,0.000041699845,0.0003007741,0.00019515726,0.00022397298],"category_scores_gemma":[0.00011351051,0.00019565363,0.00015088051,0.00021362824,0.00034926692,0.000010684119,0.000033869786,0.00016412738,0.0000042583542],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047063244,0.000027002427,0.0548199,0.000014780365,0.00009932294,0.000013811502,0.000068622605,0.0000023003295,0.9285131,0.00002435113,0.016160486,0.00020924158],"study_design_scores_gemma":[0.0006933685,0.00032498426,0.007130055,0.00002785925,0.00004740919,0.00040688153,0.00031360742,8.39716e-7,0.8105243,0.000020343798,0.18030408,0.00020631604],"about_ca_topic_score_codex":0.00074540306,"about_ca_topic_score_gemma":0.0040887822,"teacher_disagreement_score":0.16414359,"about_ca_system_score_codex":0.000056237288,"about_ca_system_score_gemma":0.00041950628,"threshold_uncertainty_score":0.79785234},"labels":[],"label_agreement":null},{"id":"W4281479607","doi":"10.1128/cmr.00179-21","title":"Machine Learning for Antimicrobial Resistance Prediction: Current Practice, Limitations, and Clinical Perspective","year":2022,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":224,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Sunnybrook Health Science Centre; Discovery Centre; Health Sciences Centre; Agriculture and Agri-Food Canada; Dalhousie University","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Computer science; Antibiotic resistance; Set (abstract data type); Data science; Perspective (graphical); Machine learning; Resistance (ecology); Bridge (graph theory); Risk analysis (engineering); Artificial intelligence; Medicine; Biology; Antibiotics; Genetics","score_opus":0.22435704642306034,"score_gpt":0.46640835571233114,"score_spread":0.2420513092892708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281479607","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000016024342,0.99381757,0.00023736258,0.00020140671,0.0025440785,0.0024430973,0.0005096457,0.000033359007,0.0001974647],"genre_scores_gemma":[0.0000028790628,0.98824126,0.0025045285,0.0003488049,0.0013877318,0.0003307053,0.0059233615,0.000059379287,0.0012013376],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9902907,0.004871857,0.0029460855,0.0015462894,0.00002482367,0.00032025506],"domain_scores_gemma":[0.99459684,0.002405013,0.0019021978,0.000684513,0.00026786065,0.00014357528],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0059213997,0.00045970257,0.002090091,0.00007016756,0.0003878321,0.000060098446,0.000412894,0.0006831516,0.000052873234],"category_scores_gemma":[0.032699183,0.00040390305,0.0013324096,0.00017064839,0.00044128133,0.000010779929,0.00040335485,0.001301315,0.000041727315],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013210744,0.0004105513,0.00018871583,0.0036621275,0.00036242142,5.707789e-7,0.000018563594,1.05166215e-7,0.000104288876,0.00013031399,0.03244414,0.9625461],"study_design_scores_gemma":[0.0004770643,0.00048136388,0.000013173791,0.0010388563,0.0010532596,0.000071449416,0.00002039101,0.0000017773616,3.0895023e-7,0.000013143893,0.9964789,0.00035027287],"about_ca_topic_score_codex":0.0000024297713,"about_ca_topic_score_gemma":0.00003513713,"teacher_disagreement_score":0.9640348,"about_ca_system_score_codex":0.00008900285,"about_ca_system_score_gemma":0.0004539182,"threshold_uncertainty_score":0.9998413},"labels":[],"label_agreement":null},{"id":"W4283217290","doi":"10.3138/jammi-2022-0004","title":"Impact of a bloodstream infection stewardship program in hospitalized patients","year":2022,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Horizon Health Network; Moncton Hospital","funders":"","keywords":"Medicine; Antimicrobial stewardship; Empiric therapy; Pharmacist; Internal medicine; Medical prescription; Bacteremia; Intensive care medicine; Intervention (counseling); Retrospective cohort study; Antibiotics; Emergency medicine; Pediatrics; Pharmacy; Antibiotic resistance; Family medicine; Nursing","score_opus":0.003510840079543581,"score_gpt":0.2389875334734632,"score_spread":0.2354766933939196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283217290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99908453,0.0000646234,0.000001365397,0.00026097978,0.00038474947,0.00012438906,0.000065143104,0.0000012590564,0.0000129552],"genre_scores_gemma":[0.9997942,0.000033342814,0.0000028785137,0.000075474345,0.00003363292,0.00000484765,0.00003452263,0.0000033060942,0.000017833116],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989354,0.00036301208,0.00037081217,0.00007672363,0.00016608613,0.00008799322],"domain_scores_gemma":[0.998946,0.000039955437,0.0006704009,0.000079574034,0.00019191917,0.000072149756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005989492,0.000056386583,0.00015274821,0.000039485225,0.00005609717,0.0000039951706,0.00011068448,0.00006972032,0.000041937157],"category_scores_gemma":[0.0019288597,0.00004301193,0.000111402784,0.0001089786,0.00003371289,0.0000041465673,0.0000826679,0.00015587172,2.001472e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008725067,0.0003787864,0.98690206,0.000014636275,0.000092851275,5.133375e-7,0.000017037662,0.00004124208,0.010315346,0.0000044205563,0.0014436588,0.00070221466],"study_design_scores_gemma":[0.0011750448,0.00044758033,0.9968761,0.000015195459,0.00003088694,0.000005973276,0.000008534022,0.00000777832,0.00039507428,0.000026183237,0.00097012403,0.000041522235],"about_ca_topic_score_codex":0.020347988,"about_ca_topic_score_gemma":0.031834975,"teacher_disagreement_score":0.011486986,"about_ca_system_score_codex":0.00022753415,"about_ca_system_score_gemma":0.0010927386,"threshold_uncertainty_score":0.9861756},"labels":[],"label_agreement":null},{"id":"W4283587040","doi":"10.1128/spectrum.00640-22","title":"Subinhibitory Concentrations of Antibiotics Exacerbate Staphylococcal Infection by Inducing Bacterial Virulence","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Health and Medical Research Fund; Food and Health Bureau; University Grants Committee","keywords":"Antibiotics; Virulence; Microbiology; Bacteremia; Tetracycline; Biology; In vivo; Peritonitis; Ampicillin","score_opus":0.007810772119505395,"score_gpt":0.2205224070742702,"score_spread":0.2127116349547648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283587040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99786186,0.00007994145,0.00035781873,0.00014138335,0.0009310305,0.00018374508,0.00032027694,0.000021499287,0.000102434446],"genre_scores_gemma":[0.9980971,0.000026843441,0.000100758894,0.000085025094,0.0001549913,0.0000026332098,0.0012891588,0.000013724352,0.00022976127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883145,0.00023478395,0.00031615712,0.00035713174,0.000039305352,0.00022115998],"domain_scores_gemma":[0.9994553,0.000015123574,0.00018275245,0.00026769153,0.000041275744,0.00003788158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026501666,0.000119793694,0.0001491129,0.00004421249,0.00023253432,0.000016944305,0.00014034219,0.000107723805,0.00036428968],"category_scores_gemma":[0.00005897127,0.00014008385,0.00006938949,0.00011680911,0.0001583479,0.000005610232,0.00016948044,0.00015504057,0.000006339072],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055707053,0.00010603066,0.015237467,0.000008745464,0.000022436414,4.011269e-7,0.000053201253,0.000034802837,0.98168695,0.000056945726,0.0026655816,0.00007174457],"study_design_scores_gemma":[0.00036606804,0.00027588443,0.005273078,0.0000036386966,0.000010929826,0.000021685844,0.000051728817,0.000016485015,0.971163,0.000020123141,0.022649003,0.00014841584],"about_ca_topic_score_codex":0.00012585841,"about_ca_topic_score_gemma":0.000103965365,"teacher_disagreement_score":0.01998342,"about_ca_system_score_codex":0.000047486807,"about_ca_system_score_gemma":0.000093257244,"threshold_uncertainty_score":0.5712454},"labels":[],"label_agreement":null},{"id":"W4283817339","doi":"10.1101/2022.07.01.498527","title":"Serotyping <i>Salmonella</i> Enteritidis and Typhimurium Using Whole Cell Matrix Assisted Laser Desorption Ionization – Time of Flight Mass Spectrometry (MALDI-TOF MS) through Multivariate Analysis and Artificial Intelligence","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ontario Agri-Food Innovation Alliance; University of Guelph","keywords":"Salmonella enteritidis; Salmonella; Serotype; Mass spectrometry; Artificial intelligence; Artificial neural network; Multivariate statistics; Computer science; Analytical Chemistry (journal); Chromatography; Chemistry; Biology; Machine learning; Microbiology; Genetics","score_opus":0.01790159755057569,"score_gpt":0.2514507575273915,"score_spread":0.2335491599768158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283817339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92945254,0.0003965527,0.06917321,0.000037730984,0.0002325152,0.00036523977,0.00029098665,0.000047924015,0.0000033185047],"genre_scores_gemma":[0.97647136,0.00016251292,0.023056528,0.000025942438,0.00016005302,0.000023860073,0.000029120283,0.00005706971,0.000013544292],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99763846,0.0002819588,0.000665073,0.0009481065,0.00019715539,0.00026925452],"domain_scores_gemma":[0.99827087,0.000029954499,0.00059832184,0.0006712078,0.00032747703,0.00010219226],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005697419,0.00033971237,0.00045807628,0.00026192554,0.00020248177,0.00019418083,0.00022116424,0.00034338326,0.00009016787],"category_scores_gemma":[0.00016233846,0.00041373027,0.00013688048,0.00078036985,0.00011238148,0.000028202334,0.00047398236,0.00026198674,0.0000038262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000063423715,0.00011004276,0.008321202,0.0002474497,0.00020756501,0.0000030249453,0.000020602427,0.00054202863,0.9904583,0.000019452162,0.0000041129606,0.0000027927438],"study_design_scores_gemma":[0.00014382302,0.000051811225,0.03601369,0.00006749142,0.00046385702,6.669652e-8,0.00001969089,0.007859327,0.95484805,0.000007222609,0.000085977204,0.00043901545],"about_ca_topic_score_codex":0.0001235877,"about_ca_topic_score_gemma":0.0000065057448,"teacher_disagreement_score":0.04701885,"about_ca_system_score_codex":0.00008662577,"about_ca_system_score_gemma":0.00012325973,"threshold_uncertainty_score":0.99983144},"labels":[],"label_agreement":null},{"id":"W4284894161","doi":"10.5326/1547-3317-58.4.1","title":"2022 AAFP/AAHA Antimicrobial Stewardship Guidelines","year":2022,"lang":"en","type":"article","venue":"Journal of the American Animal Hospital Association","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Medicine; Antimicrobial stewardship; Antimicrobial; Intensive care medicine; Internal medicine; Microbiology; Antibiotics; Antibiotic resistance","score_opus":0.012739241352298298,"score_gpt":0.2673269414888785,"score_spread":0.25458770013658016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4284894161","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917195,0.000050930397,0.000023923956,0.007134737,0.0008782287,0.0000819514,0.000030237332,0.0000053860863,0.000075127515],"genre_scores_gemma":[0.9972936,0.000025587955,0.00035307035,0.0008605765,0.0006167806,0.0000026336095,0.000011501009,0.000012824594,0.00082343805],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986784,0.0002676021,0.0004310494,0.00013518939,0.00034064226,0.00014714296],"domain_scores_gemma":[0.9978298,0.000022154754,0.0015490131,0.00016082906,0.00039914303,0.000039064722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009822521,0.000085379594,0.00016790738,0.000035593544,0.00023015162,0.00004696158,0.00036010233,0.000025034708,0.000035226458],"category_scores_gemma":[0.0012177004,0.00007178537,0.00022738067,0.00022093112,0.000038486003,0.000009944512,0.00022206627,0.0001977322,0.0000028114828],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013453745,0.00012792996,0.10093591,0.000002444865,0.00006581719,0.0000010809363,0.000081357735,0.00005051555,0.83480716,0.000009458648,0.06276985,0.0010139608],"study_design_scores_gemma":[0.0009447459,0.0033232416,0.87436426,0.000015511938,0.00010751552,0.00006779286,0.001501659,0.00010131701,0.055515017,0.000086412416,0.063583724,0.00038883198],"about_ca_topic_score_codex":0.000037061927,"about_ca_topic_score_gemma":0.000009908548,"teacher_disagreement_score":0.7792921,"about_ca_system_score_codex":0.00020905744,"about_ca_system_score_gemma":0.00011744573,"threshold_uncertainty_score":0.29273224},"labels":[],"label_agreement":null},{"id":"W4285588789","doi":"10.1007/s10096-022-04472-x","title":"A side-by-side comparison of the performance and time-and-motion data of VITEK MS","year":2022,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Health Sciences; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Concordance; Prime (order theory); Sample (material); Medicine; Chromatography; Mathematics; Internal medicine; Chemistry","score_opus":0.03429620551124969,"score_gpt":0.3199411437867648,"score_spread":0.2856449382755151,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285588789","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99850863,0.0006732481,0.000045984467,0.00010738072,0.00027207079,0.00008782657,0.00020267679,0.0000032667792,0.000098898185],"genre_scores_gemma":[0.9994418,0.00013005837,0.000038404152,0.00013120097,0.00009466947,4.8387136e-7,0.000110726825,0.000008953468,0.00004370464],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9975677,0.0012619253,0.0008550098,0.00019418546,0.000040582254,0.00008057912],"domain_scores_gemma":[0.9984948,0.00014217789,0.0008816942,0.00031542525,0.00011049426,0.00005541123],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012729298,0.000078531455,0.00027185504,0.00002532472,0.00010918423,0.000009390353,0.00030220862,0.00002881447,0.000026711954],"category_scores_gemma":[0.0010300924,0.000060368126,0.000097676675,0.000053284653,0.00032771908,0.0000085147585,0.00053327525,0.00018399837,0.000001113633],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012503572,0.00026371935,0.32569495,0.000018640887,0.000066091576,4.9541586e-7,0.000022288725,0.000029622146,0.66397125,0.0000015121855,0.0020462286,0.0077601937],"study_design_scores_gemma":[0.0023131652,0.0028272253,0.94114196,0.000063894295,0.00028999394,0.0002790759,0.000085257096,0.00017941606,0.023252865,0.000017975073,0.0293373,0.00021188757],"about_ca_topic_score_codex":0.00000365448,"about_ca_topic_score_gemma":0.0000030013546,"teacher_disagreement_score":0.64071834,"about_ca_system_score_codex":0.0000042098086,"about_ca_system_score_gemma":0.000054873803,"threshold_uncertainty_score":0.24617408},"labels":[],"label_agreement":null},{"id":"W4285676647","doi":"10.1101/2022.07.16.22277700","title":"Integrated host-microbe metagenomics for sepsis diagnosis in critically ill adults","year":2022,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Sepsis; Medicine; Cohort; Metagenomics; Procalcitonin; Internal medicine; Receiver operating characteristic; Area under the curve; Immunology; Gene; Intensive care medicine; Bioinformatics; Biology; Genetics","score_opus":0.02582061121714457,"score_gpt":0.28779645138688703,"score_spread":0.26197584016974246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285676647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99467194,0.0003513854,0.00087236066,0.0013563205,0.00088958646,0.0008605981,0.00082502817,0.000033338925,0.00013945113],"genre_scores_gemma":[0.98446274,0.00042539477,0.007796266,0.0015729446,0.00021067975,0.0011910495,0.003651831,0.00007315136,0.0006159625],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979667,0.0002009334,0.00055694877,0.00088284444,0.00008801514,0.00030457758],"domain_scores_gemma":[0.9984013,0.00008762254,0.00014992042,0.00073270977,0.0005394179,0.00008903986],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00065536005,0.00027511222,0.00035094612,0.00010637261,0.000087537526,0.00009056353,0.0005259568,0.00032306786,0.00029961774],"category_scores_gemma":[0.0034629633,0.00030372094,0.000249629,0.00011426194,0.000065086526,0.0000029471194,0.00074136426,0.00035748124,0.0000068546783],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003532885,0.00051855744,0.12425091,0.00049786555,0.00017490801,0.0000075861158,0.00037455565,0.00010294641,0.8653664,0.00008876322,0.0034700374,0.004794183],"study_design_scores_gemma":[0.0028339294,0.0005839081,0.19744933,0.00036116765,0.00029547213,0.000009498959,0.0013896737,0.0016613462,0.25291643,0.001015172,0.53913516,0.0023489103],"about_ca_topic_score_codex":0.00018236403,"about_ca_topic_score_gemma":0.0005999509,"teacher_disagreement_score":0.61244994,"about_ca_system_score_codex":0.00008160459,"about_ca_system_score_gemma":0.00017914626,"threshold_uncertainty_score":0.99994147},"labels":[],"label_agreement":null},{"id":"W4286516499","doi":"10.1016/j.cmi.2022.07.011","title":"Concurrent external validation of bloodstream infection probability models","year":2022,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Clinical Evaluative Sciences; Ottawa Hospital; University of Ottawa","funders":"","keywords":"Percentile; Statistics; Calibration; Medicine; Statistic; Population; Logistic regression; Coverage probability; Multivariate statistics; Sample size determination; Confidence interval; Mathematics","score_opus":0.053254391775359074,"score_gpt":0.3281455497960555,"score_spread":0.2748911580206964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4286516499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959483,0.00006734079,0.0027885411,0.000034459965,0.0008340998,0.00019734299,0.00002558869,0.000016116433,0.00008821932],"genre_scores_gemma":[0.99928415,0.000106132924,0.00009766256,0.000057205358,0.00011305285,0.000026450525,0.00025926423,0.000005135114,0.000050920113],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986576,0.00047534914,0.0004381143,0.00031559612,0.000021731314,0.00009164701],"domain_scores_gemma":[0.9994577,0.00004084839,0.00021349645,0.00016355232,0.00009156956,0.000032811044],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000875128,0.00007820911,0.00014124966,0.000030311558,0.00014817833,0.000008358543,0.000043562242,0.00012544787,0.00007657721],"category_scores_gemma":[0.00024695563,0.00008097912,0.00008891223,0.000060761944,0.00015804105,0.000008460308,0.00013263972,0.00015881308,0.0000020047664],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047463716,0.00030261255,0.23067702,0.000019124725,0.000021094604,4.770241e-8,0.000015967573,0.00021348876,0.7622432,0.00018322565,0.00011752249,0.0061592194],"study_design_scores_gemma":[0.0030576284,0.004514921,0.48613682,0.00003284946,0.00015319549,0.0001908814,0.00002804873,0.0009802047,0.47727218,0.0050847386,0.021969592,0.0005789348],"about_ca_topic_score_codex":0.00006485291,"about_ca_topic_score_gemma":0.00002289689,"teacher_disagreement_score":0.28497103,"about_ca_system_score_codex":0.000014333135,"about_ca_system_score_gemma":0.000041557127,"threshold_uncertainty_score":0.3302233},"labels":[],"label_agreement":null},{"id":"W4288060716","doi":"10.3791/63849","title":"Enhanced Reproducibility and Precision of High-Throughput Quantification of Bacterial Growth Data Using a Microplate Reader","year":2022,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of British Columbia","funders":"","keywords":"Repeatability; Reproducibility; Throughput; Protocol (science); Sampling (signal processing); Standard deviation; Biology; Bacterial growth; Statistics; Biological system; Computer science; Biomedical engineering; Materials science; Bacteria; Mathematics; Physics; Optics; Medicine; Pathology; Detector","score_opus":0.08897543532797564,"score_gpt":0.427309086918975,"score_spread":0.3383336515909994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4288060716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952121,0.0003278039,0.0037172257,0.000025222153,0.00048815523,0.00015685702,0.0000649121,0.0000022585405,0.0000055170085],"genre_scores_gemma":[0.9923092,0.00006113114,0.0073130676,0.000011373783,0.000100452344,0.0000020291052,0.00017026176,0.000012163841,0.000020316465],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979975,0.0003445834,0.00086489227,0.0004713468,0.00022747772,0.00009418914],"domain_scores_gemma":[0.99767673,0.000025044475,0.0010429629,0.00090970815,0.0003040264,0.00004150472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018559085,0.000095255135,0.00027866891,0.00006431624,0.00007950901,0.000018539738,0.00030573865,0.000051934847,0.000079493664],"category_scores_gemma":[0.0008500133,0.00009367021,0.00005491581,0.00010310439,0.000075409174,0.00002718288,0.00040910314,0.000073310715,1.5483847e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010944839,0.0003189273,0.00048156592,0.00003229417,0.000057873596,4.15355e-7,0.00043968117,0.000010372719,0.9969578,0.00001408363,0.00010930407,0.00048324725],"study_design_scores_gemma":[0.0011184266,0.0003050736,0.002794369,0.000025799995,0.000030719137,0.000021631751,0.0003496615,0.000083029045,0.99492383,0.000051363593,0.00021548566,0.00008063282],"about_ca_topic_score_codex":0.00008871106,"about_ca_topic_score_gemma":0.0000017423089,"teacher_disagreement_score":0.0035958416,"about_ca_system_score_codex":0.0000266023,"about_ca_system_score_gemma":0.000101393445,"threshold_uncertainty_score":0.38197604},"labels":[],"label_agreement":null},{"id":"W4294811898","doi":"10.1021/acs.analchem.2c02287","title":"Electrochemical Quantification of Tobramycin Retention in <i>Pseudomonas aeruginosa</i> as Antimicrobial Susceptibility Indicator","year":2022,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Canada Research Coordinating Committee; Research Manitoba; Cystic Fibrosis Foundation","keywords":"Pseudomonas aeruginosa; Antibiotics; Tobramycin; Chemistry; Antibiotic resistance; Bacteria; Antimicrobial; Microbiology; Bacterial growth; Biology; Biochemistry","score_opus":0.014048960803796064,"score_gpt":0.2594371903133294,"score_spread":0.24538822950953335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4294811898","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99789196,0.000032668035,0.00022873309,0.00029320506,0.000053295928,0.00015420353,0.000029300892,0.00001893296,0.0012976914],"genre_scores_gemma":[0.99811745,0.000010809739,0.0002077157,0.00011446037,0.000083067294,0.000024249613,0.00087841833,0.000016538464,0.0005472931],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99818635,0.00011415217,0.00057037116,0.0006130371,0.0002462193,0.00026986864],"domain_scores_gemma":[0.99905735,0.000032200536,0.00018942395,0.00054290594,0.00008397035,0.00009414251],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006058172,0.00015318496,0.00022585013,0.00004453302,0.00009325971,0.00002172599,0.00032265793,0.00015358206,0.0005935378],"category_scores_gemma":[0.0005005757,0.00018423155,0.00015193789,0.00029879544,0.00014333063,0.0000070966307,0.00020695823,0.0002874983,0.000011224472],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017948313,0.00034234714,0.019054832,0.00006217103,0.000017260294,0.0000016146381,0.000022522736,0.0000087880335,0.9795534,0.00011721941,0.00054629083,0.0000940663],"study_design_scores_gemma":[0.00046810522,0.00007261195,0.006919651,0.000008129953,0.000022934979,0.000022320008,0.00012826681,0.00029203173,0.9907341,0.00014303604,0.0009860845,0.00020271269],"about_ca_topic_score_codex":0.00006240054,"about_ca_topic_score_gemma":0.000013181268,"teacher_disagreement_score":0.012135181,"about_ca_system_score_codex":0.00008580346,"about_ca_system_score_gemma":0.00017016004,"threshold_uncertainty_score":0.75127447},"labels":[],"label_agreement":null},{"id":"W4295926784","doi":"10.1155/2022/3130361","title":"A Live Cell Imaging Microfluidic Model for Studying Extravasation of Bloodborne Bacterial Pathogens","year":2022,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ted Rogers Centre for Heart Research; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Toronto","keywords":"Extravasation; Borrelia burgdorferi; Biology; Live cell imaging; Venule; Lyme disease; In vivo; Microbiology; Cell; Virology; Immunology; Endothelium","score_opus":0.017841382911203952,"score_gpt":0.22349396479264758,"score_spread":0.2056525818814436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4295926784","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98107773,0.0011658041,0.016377034,0.00004202066,0.00041277704,0.00045782916,0.00042786155,0.000015001697,0.000023944547],"genre_scores_gemma":[0.9947926,0.000029129887,0.0017830821,0.000092555965,0.00012481086,0.00007900264,0.0026664857,0.00002883713,0.00040352406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99869406,0.00017808453,0.00038522316,0.00045980973,0.000035067445,0.00024776545],"domain_scores_gemma":[0.99925435,0.000024422716,0.0002185161,0.00033618542,0.0001293465,0.00003716207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047656547,0.00014545264,0.0001966605,0.00006157786,0.00021230102,0.0000146077855,0.00023856487,0.00007789089,0.00010775693],"category_scores_gemma":[0.000053449286,0.00017123124,0.00013794524,0.000061297025,0.00007709611,0.0000036384033,0.00023158063,0.000082513805,0.0000034950453],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001119103,0.00016138957,0.0009193557,0.000037049944,0.000021849019,7.709233e-7,0.00040105064,0.00010015929,0.99705416,0.000013728932,0.00088591897,0.0002926631],"study_design_scores_gemma":[0.0009568689,0.00016937114,0.0001299546,0.0000033376655,0.000046240006,0.000017426753,0.00041630474,0.0016135836,0.9908283,0.00003995567,0.0055775703,0.00020108807],"about_ca_topic_score_codex":0.000011696417,"about_ca_topic_score_gemma":0.000004789662,"teacher_disagreement_score":0.014593952,"about_ca_system_score_codex":0.000028445162,"about_ca_system_score_gemma":0.00011123383,"threshold_uncertainty_score":0.6982607},"labels":[],"label_agreement":null},{"id":"W4296177167","doi":"10.1016/j.anaerobe.2022.102640","title":"Multi-year comparison of VITEK® MS and 16S rRNA gene sequencing performance for the identification of rarely encountered anaerobes causing invasive human infections in a large Canadian region: can our laboratory abandon 16S rRNA gene sequencing?","year":2022,"lang":"en","type":"article","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"16S ribosomal RNA; Biology; Microbiology; Bacilli; Anaerobic bacteria; Clinical microbiology; Anaerobic exercise; Ribosomal RNA; Gram-Positive Cocci; Metagenomics; Bacteria; Gene; Genetics; Staphylococcus aureus; Physiology","score_opus":0.03951692836737112,"score_gpt":0.28831261450468865,"score_spread":0.24879568613731753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4296177167","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982728,0.00038802155,0.00031968657,0.00010582853,0.00018074509,0.00047406,0.00024071978,0.000009407398,0.0000087620465],"genre_scores_gemma":[0.9989222,0.00011207613,0.0003258881,0.000083107705,0.000067942325,0.000077539305,0.0003399846,0.000020911586,0.000050302777],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99856967,0.00014068981,0.00058146706,0.0003450143,0.0001179218,0.00024522515],"domain_scores_gemma":[0.9988254,0.000029927878,0.00040468934,0.0003903968,0.00027737836,0.000072208975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006754526,0.00014165157,0.00022137813,0.00015892016,0.000510275,0.00003785974,0.00016915375,0.00008744844,0.0000059689332],"category_scores_gemma":[0.00022892829,0.00014851602,0.000060025504,0.0002943637,0.000065868124,0.000022740116,0.00008405863,0.00014587912,2.1192693e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019519934,0.00004592866,0.105008736,0.00005641646,0.00003191591,0.0000015614169,0.0012701155,0.00072819274,0.8926511,0.000022709515,0.00009452488,0.0000692855],"study_design_scores_gemma":[0.0014639004,0.00032833248,0.14792338,0.000061277635,0.00006758524,0.000024644236,0.0065079387,0.004147214,0.838668,0.000011170243,0.00047652415,0.0003200373],"about_ca_topic_score_codex":0.033447552,"about_ca_topic_score_gemma":0.24713174,"teacher_disagreement_score":0.21368417,"about_ca_system_score_codex":0.00025383072,"about_ca_system_score_gemma":0.0005092872,"threshold_uncertainty_score":0.9729888},"labels":[],"label_agreement":null},{"id":"W4296688406","doi":"10.1001/jamanetworkopen.2022.32576","title":"Association of Follow-up Blood Cultures With Mortality in Patients With Gram-Negative Bloodstream Infections","year":2022,"lang":"en","type":"review","venue":"JAMA Network Open","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Medicine; Observational study; Hazard ratio; Confounding; Internal medicine; Epidemiology; Randomized controlled trial; Meta-analysis; Blood culture; MEDLINE; Confidence interval; Antibiotics","score_opus":0.025440222477796724,"score_gpt":0.3063537081423905,"score_spread":0.2809134856645938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4296688406","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.690367,0.29157904,0.00002686126,0.000072273055,0.0011084644,0.010251258,0.0010724191,0.00006618273,0.0054565086],"genre_scores_gemma":[0.04986884,0.9314786,0.0010011079,0.000095869014,0.00060611,0.001295392,0.012334364,0.00014410075,0.0031755713],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99785644,0.00061470154,0.0005446047,0.00051934295,0.00022993005,0.00023495436],"domain_scores_gemma":[0.99818814,0.00009781924,0.0009835274,0.0004915828,0.00018557857,0.0000533575],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071983074,0.0002714036,0.00075896626,0.000043035765,0.00013989864,0.00014254412,0.00043230885,0.00027645298,0.000105829466],"category_scores_gemma":[0.00039767506,0.0002104405,0.00014008969,0.0004989084,0.00003882029,0.000017934371,0.00033095665,0.00031265809,0.0000015509061],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017893355,0.0013395335,0.9375023,0.0013163111,0.0024911354,0.00000231328,0.0001424387,0.00009860026,0.000007994407,0.000044231547,0.0023192563,0.05455695],"study_design_scores_gemma":[0.0053437315,0.0015154157,0.20083383,0.0033340135,0.0027189036,0.0000041637836,0.00009623319,0.0000023565792,0.000030680363,0.000047976224,0.78513104,0.00094168773],"about_ca_topic_score_codex":0.0006114482,"about_ca_topic_score_gemma":0.0038271376,"teacher_disagreement_score":0.78281176,"about_ca_system_score_codex":0.00008209127,"about_ca_system_score_gemma":0.00025273513,"threshold_uncertainty_score":0.85815144},"labels":[],"label_agreement":null},{"id":"W4298431846","doi":"10.3791/61799-v","title":"Semi-Quantitative Analysis of Peptidoglycan by Liquid Chromatography Mass Spectrometry and Bioinformatics","year":2020,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Peptidoglycan; Cell wall; Biology; Mass spectrometry; Bacteria; Microbiology; Computational biology; Biochemistry; Chemistry; Genetics; Chromatography","score_opus":0.026255835586170173,"score_gpt":0.37532106576566565,"score_spread":0.3490652301794955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4298431846","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9884464,0.0007695408,0.010452317,0.00007711978,0.000053692223,0.00006480229,0.000031501844,0.0000040853024,0.00010054395],"genre_scores_gemma":[0.9830276,0.00020769883,0.016486842,0.00016792818,0.00003706294,0.0000010620058,0.00005063709,0.000009394272,0.000011780577],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988908,0.00007341373,0.0006125001,0.00012769541,0.00018611898,0.000109467015],"domain_scores_gemma":[0.99895465,0.000018723287,0.00060327107,0.000117462005,0.0001674219,0.00013843928],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021136526,0.00011147249,0.0003448699,0.0001776893,0.00003460767,0.00003306761,0.00013528546,0.000066857705,0.00005502904],"category_scores_gemma":[0.00018546704,0.00010226611,0.0001928576,0.00046269633,0.00007267637,0.000015923059,0.000044759214,0.00006243223,8.1115513e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003422609,0.00007285332,0.0026165622,0.000025156867,0.0008756031,7.7569325e-7,0.0008789169,0.000004032601,0.99451256,0.000019521023,0.0006156686,0.00003611066],"study_design_scores_gemma":[0.0009207952,0.0014113573,0.0014875487,0.000019080255,0.00026642944,0.0000040300115,0.0018514061,0.00094463065,0.99233615,0.0000044693516,0.0006218138,0.0001322819],"about_ca_topic_score_codex":0.0000049349164,"about_ca_topic_score_gemma":5.1080895e-7,"teacher_disagreement_score":0.0060345237,"about_ca_system_score_codex":0.0000093584895,"about_ca_system_score_gemma":0.00003089397,"threshold_uncertainty_score":0.41702908},"labels":[],"label_agreement":null},{"id":"W4306704105","doi":"10.1128/spectrum.03730-22","title":"A Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Direct-from-Urine-Specimen Diagnostic for Gram-Negative Pathogens","year":2022,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Mass spectrometry; Urine; Gram; Time-of-flight mass spectrometry; Chromatography; Matrix (chemical analysis); Chemistry; Analytical Chemistry (journal); Ionization; Microbiology; Biology; Bacteria; Genetics; Ion","score_opus":0.008158950437117273,"score_gpt":0.226209371262907,"score_spread":0.2180504208257897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4306704105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99377066,0.00023386622,0.0024170156,0.00042529393,0.00039744648,0.00061568216,0.0019182992,0.000046227975,0.00017553882],"genre_scores_gemma":[0.98821795,0.000028707787,0.004599452,0.00011226626,0.0002310279,0.00012411145,0.005000735,0.000036534453,0.0016492233],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983118,0.00027396134,0.000442873,0.00059625105,0.00006110648,0.00031396287],"domain_scores_gemma":[0.9988916,0.000227188,0.00028920182,0.0004328049,0.00010373579,0.000055480905],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00030671115,0.00020505047,0.00030260097,0.0001230807,0.0002463383,0.000022999831,0.00027885707,0.00014168202,0.0010748567],"category_scores_gemma":[0.00054394285,0.00022233377,0.00016645188,0.00030330804,0.00011427774,0.0000060883144,0.00017841323,0.00011596997,0.000032268304],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017932637,0.00017558398,0.0029627245,0.000013563611,0.00010895289,0.0000021945139,0.000072494826,0.00005554966,0.9944104,0.000067320805,0.0018887054,0.000063169806],"study_design_scores_gemma":[0.0010926101,0.00053665956,0.013671629,0.0000085470565,0.00008061749,0.000030210187,0.00013949594,0.000074561765,0.9766101,0.0006345769,0.0068000993,0.00032088574],"about_ca_topic_score_codex":0.000038214606,"about_ca_topic_score_gemma":0.000059499387,"teacher_disagreement_score":0.017800307,"about_ca_system_score_codex":0.00009941401,"about_ca_system_score_gemma":0.0000732118,"threshold_uncertainty_score":0.9998383},"labels":[],"label_agreement":null},{"id":"W4306946797","doi":"10.3389/fvets.2022.1031373","title":"Development and validation of main spectral profile for rapid identification of Yersinia ruckeri isolated from Atlantic salmon using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry","year":2022,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"Atlantic Veterinary College","keywords":"Yersinia ruckeri; Salmo; Biology; Mass spectrometry; Matrix-assisted laser desorption/ionization; Chromatography; Microbiology; Veterinary medicine; Chemistry; Fishery; Desorption; Fish <Actinopterygii>; Medicine","score_opus":0.020533836855876734,"score_gpt":0.2645518192705048,"score_spread":0.24401798241462808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4306946797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.954141,0.00005782518,0.045172017,0.000008354038,0.00025370973,0.00029550507,0.00006117898,0.000005124101,0.0000052784017],"genre_scores_gemma":[0.87257534,0.0000056677254,0.12700179,0.0000020483897,0.000011908852,0.00000919711,0.0003433134,0.0000066663106,0.000044053],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988655,0.000088027344,0.00044776668,0.00030541804,0.00016839182,0.00012488579],"domain_scores_gemma":[0.9993319,0.000014905704,0.00034732255,0.00018297698,0.00009621482,0.000026680085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007139656,0.000077701734,0.00014290532,0.0002611312,0.00012527945,0.000019850271,0.0001731295,0.000040999897,0.000018973502],"category_scores_gemma":[0.00012539333,0.00009192035,0.000027691118,0.0006177113,0.00014097271,0.000030531846,0.0000798229,0.00003588498,2.1629417e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001403294,0.000062325,0.00917386,0.000044902146,0.000009797739,3.5226694e-7,0.00025943085,0.00017874347,0.9897683,0.000006049621,0.00001929693,0.00033657564],"study_design_scores_gemma":[0.00037071347,0.00032220103,0.07039926,0.000022539847,0.000014619985,0.000008080835,0.00052145286,0.023298815,0.90482265,0.00005217796,0.000070687514,0.00009678856],"about_ca_topic_score_codex":0.000013533559,"about_ca_topic_score_gemma":5.866737e-7,"teacher_disagreement_score":0.08494567,"about_ca_system_score_codex":0.00008495785,"about_ca_system_score_gemma":0.00015998556,"threshold_uncertainty_score":0.37484032},"labels":[],"label_agreement":null},{"id":"W4308054597","doi":"10.1128/jcm.01032-22","title":"A Practical Workflow for the Identification of Aspergillus, Fusarium, Mucorales by MALDI-TOF MS: Database, Medium, and Incubation Optimization","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Hospital for Sick Children; Public Health Ontario; Trillium Health Centre; University of Toronto","funders":"","keywords":"Mucorales; Aspergillus; Fusarium; Identification (biology); Biology; Aspergillus fumigatus; Microbiology; Agar; Database; Botany; Mucormycosis; Medicine; Bacteria; Genetics; Computer science","score_opus":0.04974612652984722,"score_gpt":0.36889041719152477,"score_spread":0.31914429066167754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308054597","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8265023,0.00086960907,0.1641349,0.0060676998,0.0015149548,0.00045162908,0.00044423598,0.0000054600177,0.000009199621],"genre_scores_gemma":[0.9849492,0.0004853484,0.01301041,0.00033877796,0.00032902867,0.000015060807,0.0007634945,0.00001209178,0.000096590134],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99773324,0.0005068656,0.0013652215,0.00022002983,0.0000646366,0.00011001294],"domain_scores_gemma":[0.99732596,0.00066138845,0.0013697145,0.00023165687,0.000363166,0.00004812951],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003439241,0.00008519683,0.00025057935,0.00004079452,0.00014610647,0.000022273143,0.00021147841,0.00012396253,0.00005653606],"category_scores_gemma":[0.0042088437,0.00006670323,0.0001260063,0.0000814545,0.00020798136,0.000016035368,0.00014846004,0.00021798421,4.177945e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059867004,0.00023288772,0.0034802165,0.000019145553,0.000090812915,3.4481593e-7,0.000027872911,0.00047690925,0.9848268,0.00007979383,0.00799447,0.0021720692],"study_design_scores_gemma":[0.01375204,0.00911926,0.038142044,0.00009004476,0.001329717,0.0015074323,0.0020987547,0.022234725,0.28566542,0.0012091371,0.62360764,0.0012438117],"about_ca_topic_score_codex":0.000004823913,"about_ca_topic_score_gemma":0.000009771287,"teacher_disagreement_score":0.6991614,"about_ca_system_score_codex":0.000012692054,"about_ca_system_score_gemma":0.00013870829,"threshold_uncertainty_score":0.50386834},"labels":[],"label_agreement":null},{"id":"W4309609581","doi":"10.3389/fcimb.2022.1069960","title":"Editorial: The use of image and imaging flow cytometry as a tool to study host-pathogen interactions","year":2022,"lang":"en","type":"editorial","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Flow cytometry; Host (biology); Pathogen; Cytometry; Biology; Computational biology; Microbiology; Immunology; Ecology","score_opus":0.008385491317122738,"score_gpt":0.25447741801728513,"score_spread":0.2460919267001624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309609581","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.28496763,0.00023200474,0.0017484549,0.000036868456,0.7120947,0.0005807975,0.000317998,0.000012091178,0.000009408565],"genre_scores_gemma":[0.06795067,0.00093791384,0.004825728,0.00019087004,0.91994894,0.00031944082,0.004743977,0.00012431038,0.0009581634],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981346,0.0005008873,0.00045628712,0.00061894,0.00008663402,0.0002026305],"domain_scores_gemma":[0.999015,0.00011402327,0.00021244565,0.00040546234,0.00020716785,0.00004590825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006920888,0.00023382067,0.00033776465,0.00025631711,0.00020263193,0.00010281783,0.00015239559,0.00027644605,0.000046474757],"category_scores_gemma":[0.0015316304,0.0002180503,0.00008381228,0.00021011035,0.00013451812,0.000018402056,0.00041272558,0.0004924409,0.0000020198065],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008762292,0.000097722404,0.0049584615,0.00001752681,0.000049647013,0.0000011225179,0.000151708,0.0000035230069,0.4875647,1.9029532e-7,0.50638986,0.00067791366],"study_design_scores_gemma":[0.0005736214,0.0003063977,0.000610998,0.000012406466,0.00006584594,0.000010929837,0.00028432714,0.00002644363,0.0049039135,0.0000071318086,0.9929644,0.00023362187],"about_ca_topic_score_codex":0.00043038555,"about_ca_topic_score_gemma":0.00009137355,"teacher_disagreement_score":0.4865745,"about_ca_system_score_codex":0.000057971905,"about_ca_system_score_gemma":0.000097638025,"threshold_uncertainty_score":0.88918334},"labels":[],"label_agreement":null},{"id":"W4311344391","doi":"10.1099/acmi.0.000539.v1","title":"Misidentification of Cutibacterium acnes as Atopobium vaginae during routine bacterial screening of platelet concentrates using the VITEK 2 system","year":2022,"lang":"en","type":"preprint","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Blood Services; University of Ottawa","funders":"","keywords":"Microbiology; Biology; Bacterial vaginosis; Bacteria; Genetics","score_opus":0.023657022639340105,"score_gpt":0.28104100635500634,"score_spread":0.25738398371566623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311344391","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99642706,0.00018302088,0.0009363994,0.000073847346,0.0013190611,0.0006258812,0.0002197853,0.000040456547,0.0001745117],"genre_scores_gemma":[0.99669075,0.000032300213,0.0010264121,0.000011708063,0.0003499168,0.000032659467,0.0014302562,0.00004302137,0.00038296837],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99734694,0.0003817919,0.0010388055,0.0006826533,0.00028012972,0.00026967103],"domain_scores_gemma":[0.99730754,0.00003828185,0.0011345238,0.0010652494,0.00039089366,0.00006351065],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00069222256,0.000311413,0.00046797676,0.00007912359,0.00022174737,0.0001265695,0.000634192,0.0002709131,0.0003023713],"category_scores_gemma":[0.00018942576,0.0002802042,0.00024345242,0.00013845513,0.00021269046,0.000011001899,0.0010342171,0.0002627677,0.0000016002933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001960699,0.00005152395,0.0061792117,0.0006726963,0.00015259754,0.0000014642466,0.00027255292,0.0005300334,0.9917284,0.00012802145,0.000023096654,0.00006430141],"study_design_scores_gemma":[0.00050076516,0.000049709197,0.01765382,0.000180329,0.0001032947,0.00003260012,0.002108827,0.0007200459,0.9780567,0.000015400274,0.00027285868,0.0003056505],"about_ca_topic_score_codex":0.00088094344,"about_ca_topic_score_gemma":0.000030411298,"teacher_disagreement_score":0.013671731,"about_ca_system_score_codex":0.00006433888,"about_ca_system_score_gemma":0.0002084971,"threshold_uncertainty_score":0.999965},"labels":[],"label_agreement":null},{"id":"W4311497160","doi":"10.14745/ccdr.v48i1112a05","title":"Overview of Canada's Antimicrobial Resistance Network (AMRNet): A data-driven One Health approach to antimicrobial resistance surveillance","year":2022,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Toronto; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Antibiotic resistance; Public health surveillance; Public health; One Health; Disease surveillance; Resistance (ecology); Environmental health; Medicine; Business; Biology; Microbiology; Nursing; Antibiotics","score_opus":0.044226577707749536,"score_gpt":0.2725055782423733,"score_spread":0.22827900053462377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311497160","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9336242,0.01832758,0.00066779647,0.020630283,0.0018931257,0.0031797579,0.013874692,0.00009737365,0.007705195],"genre_scores_gemma":[0.9844456,0.00018063096,0.0026066129,0.0023011179,0.00011345038,0.000039278126,0.007629179,0.000038163467,0.0026459938],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99691814,0.0005760844,0.0008319864,0.0007251549,0.0004431061,0.00050551543],"domain_scores_gemma":[0.995077,0.00003853767,0.0005657927,0.0037026696,0.0002195065,0.00039648643],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001155603,0.00020595275,0.00046581897,0.000023298859,0.0006684268,0.000035162295,0.0014170341,0.000034128523,0.000026916492],"category_scores_gemma":[0.0004301851,0.00026495635,0.000062157145,0.00036882143,0.0000700841,0.000008230418,0.0014157634,0.00020115617,1.3206655e-7],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044883566,0.00026997548,0.009113244,0.00069202186,0.00012201775,0.0000726069,0.000023047942,0.0050198403,0.010198749,0.00013831939,0.9738362,0.00006517539],"study_design_scores_gemma":[0.0005533124,0.000026242375,0.066801906,0.00019830688,0.000034117467,0.00003664278,0.00008619187,0.00024015187,0.000389212,0.000010144804,0.93098927,0.0006345107],"about_ca_topic_score_codex":0.8043236,"about_ca_topic_score_gemma":0.99483633,"teacher_disagreement_score":0.19051272,"about_ca_system_score_codex":0.00043325502,"about_ca_system_score_gemma":0.0130828,"threshold_uncertainty_score":0.9999803},"labels":[],"label_agreement":null},{"id":"W4311744989","doi":"10.1093/ofid/ofac492.236","title":"158. Adherence to use of blood cultures according to current national guidelines and their impact in patients with community acquired pneumonia: A retrospective cohort","year":2022,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Medicine; Community-acquired pneumonia; Retrospective cohort study; Pneumonia; Cohort; Blood culture; Diabetes mellitus; Cohort study; Internal medicine; Disease; Pediatrics; Intensive care medicine; Antibiotics","score_opus":0.03495550171906087,"score_gpt":0.3306563850923902,"score_spread":0.29570088337332934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311744989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99834543,0.000025138403,0.000024691328,0.000032702446,0.00006477032,0.0007402593,0.0006892112,0.000011412403,0.00006636657],"genre_scores_gemma":[0.9992316,0.0000034284267,0.000065306245,0.00013095081,0.000012055632,0.00013119963,0.00040177756,0.000010943714,0.0000127730955],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990999,0.00015757249,0.00022272077,0.0002471288,0.00013707046,0.00013557871],"domain_scores_gemma":[0.99912095,0.000025430254,0.0001079555,0.0002290145,0.00042372674,0.00009291142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020444402,0.00012511223,0.00017534508,0.0000632084,0.00027218575,0.00011580059,0.00021260271,0.000020635925,0.000014752768],"category_scores_gemma":[0.00064222823,0.00010107544,0.00004066225,0.0002163844,0.000030507286,0.000026905203,0.0007224758,0.00006778627,5.378106e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020510425,0.00046023447,0.9791759,0.000009099854,0.00005090583,1.1515061e-7,0.00010289242,0.00026522452,0.018680414,0.000022026932,0.00035962087,0.0006684608],"study_design_scores_gemma":[0.00058428384,0.0009881206,0.9968845,0.00003133087,0.00001901834,0.0000017224571,0.00038017405,0.000019108504,0.00077132444,0.000053702555,0.00013366721,0.00013301671],"about_ca_topic_score_codex":0.0016153791,"about_ca_topic_score_gemma":0.0008095565,"teacher_disagreement_score":0.017909091,"about_ca_system_score_codex":0.00008319558,"about_ca_system_score_gemma":0.00009973044,"threshold_uncertainty_score":0.4121737},"labels":[],"label_agreement":null},{"id":"W4312082567","doi":"10.1016/j.xcrm.2022.100842","title":"A robust host-response-based signature distinguishes bacterial and viral infections across diverse global populations","year":2022,"lang":"en","type":"article","venue":"Cell Reports Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Wellcome Trust","keywords":"Biology; Gene signature; Transcriptome; Host response; Coinfection; Gene; Virology; Microbiology; Immunology; Gene expression; Genetics; Virus; Immune system","score_opus":0.02761594176326114,"score_gpt":0.2864418005974762,"score_spread":0.25882585883421505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312082567","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996785,0.00014444966,0.0004718594,0.0004144495,0.0015579695,0.00021322479,0.00009118322,0.000040099418,0.00028177086],"genre_scores_gemma":[0.99758035,0.0000028093275,0.00021449623,0.0001841354,0.00039894617,0.000030123636,0.00079272385,0.000011906867,0.00078450044],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987541,0.00015934678,0.00032733032,0.000408071,0.00016541655,0.00018573554],"domain_scores_gemma":[0.999199,0.000027890648,0.00021235422,0.00034761213,0.0001040457,0.00010913924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006057108,0.00013225515,0.0001449905,0.000025371017,0.00056523527,0.00003569635,0.00007323918,0.00007583166,0.00027955303],"category_scores_gemma":[0.0012668709,0.00012949048,0.00005069717,0.00013582423,0.00015063903,0.0000050276403,0.00017057188,0.00012164694,7.291276e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026255383,0.00014152596,0.099740416,0.000019533982,0.000011218073,0.000066571934,0.00020819092,0.00028167551,0.8960356,0.000008476252,0.002765202,0.00045904575],"study_design_scores_gemma":[0.003109069,0.0018011933,0.8298362,0.0000452528,0.00014807221,0.00068173045,0.0026113114,0.00043877432,0.01745168,0.00016404958,0.1429178,0.00079490565],"about_ca_topic_score_codex":0.00022973574,"about_ca_topic_score_gemma":0.00012484177,"teacher_disagreement_score":0.8785839,"about_ca_system_score_codex":0.000053038104,"about_ca_system_score_gemma":0.000101913094,"threshold_uncertainty_score":0.52804685},"labels":[],"label_agreement":null},{"id":"W4316662976","doi":"10.1128/spectrum.04673-22","title":"Performance of the Vitek 2 Advanced Expert System (AES) as a Rapid Tool for Reporting Antimicrobial Susceptibility Testing (AST) in <i>Enterobacterales</i> from North and Latin America","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"bioMérieux; Idorsia Pharmaceuticals; Shionogi; Basilea Pharmaceutica; Astellas Pharma; Pfizer; Melinta Therapeutics; Entasis Therapeutics; U.S. Food and Drug Administration; Amplyx; Roivant Sciences; Nabriva Therapeutics; Albany College of Pharmacy and Health Sciences; GenePOC; University of North Texas; TenNor Therapeutics; Boston Pharmaceuticals; Novartis; Harvard University; F. Hoffmann-La Roche; Wockhardt; Allergan; Cidara Therapeutics; University of Southern California; GlaxoSmithKline; Bayer","keywords":"Broth microdilution; Antimicrobial; Medicine; Confidence interval; Microbiology; Biology; Internal medicine; Minimum inhibitory concentration","score_opus":0.01615410913006869,"score_gpt":0.23984340016434716,"score_spread":0.22368929103427848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4316662976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986478,0.000042329306,0.00003985269,0.00021670206,0.00032368695,0.0005346208,0.00012786561,0.000047551475,0.000019556073],"genre_scores_gemma":[0.9977686,0.000025160647,0.0013217755,0.00017765097,0.00010482094,0.000034531364,0.00045529412,0.000021566546,0.000090640686],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99800044,0.00013402932,0.0008994633,0.00059505214,0.000033888224,0.0003371227],"domain_scores_gemma":[0.99863225,0.00009513384,0.0007018933,0.0004648827,0.00007561637,0.000030213063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035755293,0.00018471197,0.00032248537,0.00005185374,0.0001432661,0.000022435768,0.00021251228,0.00012492285,0.0000061487112],"category_scores_gemma":[0.0008023342,0.00015885678,0.000096877535,0.000260776,0.00018548107,0.00001056951,0.00022620871,0.00011465814,0.0000045037746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106361134,0.000022067154,0.29557046,0.00005545038,0.000012415198,6.5775777e-7,0.000114121765,0.000031527507,0.7023818,7.0157313e-7,0.000097575794,0.0016068899],"study_design_scores_gemma":[0.00089143525,0.0002540271,0.46135616,0.00015179791,0.000012617808,0.000036527537,0.00021182306,0.00071654975,0.53488606,0.0000038702556,0.0012243554,0.00025478768],"about_ca_topic_score_codex":0.0002475357,"about_ca_topic_score_gemma":0.00057280343,"teacher_disagreement_score":0.16749573,"about_ca_system_score_codex":0.000037429432,"about_ca_system_score_gemma":0.00006764399,"threshold_uncertainty_score":0.6477992},"labels":[],"label_agreement":null},{"id":"W4318454197","doi":"10.1101/2023.01.29.526108","title":"Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Amplicon; Biology; Computational biology; Classifier (UML); Barcode; Microbiome; Multilocus sequence typing; Bayesian probability; Metagenomics; Identification (biology); Naive Bayes classifier; Genetics; Artificial intelligence; Gene; Computer science; Polymerase chain reaction; Genotype; Support vector machine; Ecology","score_opus":0.0642893172600156,"score_gpt":0.26784354476923,"score_spread":0.2035542275092144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4318454197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967293,0.00028927685,0.0012601025,0.00014743289,0.0006782001,0.00047110257,0.000319681,0.00009809952,0.0000067628725],"genre_scores_gemma":[0.9970379,0.00048194494,0.0020041524,0.00004610987,0.00024371257,0.00009986115,0.000006981619,0.000064766726,0.000014583635],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980057,0.00014272999,0.0005462631,0.0009256433,0.0001225595,0.00025709815],"domain_scores_gemma":[0.99780554,0.000032397023,0.0005475412,0.0011299471,0.0003552664,0.00012933963],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006571073,0.00029124983,0.00032018175,0.00011321585,0.00008883905,0.00013383596,0.00036179437,0.00045478594,0.000015172484],"category_scores_gemma":[0.0005848679,0.0003399639,0.00008319198,0.00016239255,0.0001507355,0.000012188926,0.00039876325,0.00023178439,0.000023533254],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002311601,0.00003586148,0.004569566,0.00020730228,0.00005768119,0.0000013805333,0.0000033882955,0.000008158064,0.99469066,0.00018998743,0.0002020884,0.000010806597],"study_design_scores_gemma":[0.00026078123,0.000045959154,0.5120418,0.00013268657,0.000047737594,2.1087358e-8,0.0000049332143,0.00052533334,0.48505384,0.000004145164,0.0014830105,0.00039975773],"about_ca_topic_score_codex":0.00006264119,"about_ca_topic_score_gemma":0.000007840761,"teacher_disagreement_score":0.5096368,"about_ca_system_score_codex":0.000049668077,"about_ca_system_score_gemma":0.00033007597,"threshold_uncertainty_score":0.9999052},"labels":[],"label_agreement":null},{"id":"W4319931930","doi":"10.1099/acmi.0.000539.v1.4","title":"Reviewer response for version 1","year":2023,"lang":"en","type":"peer-review","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Blood Services; University of Ottawa","funders":"","keywords":"Microbiology; Bacterial vaginosis; Biology; Bacteria; Contamination; Ecology; Genetics","score_opus":0.055542726657154026,"score_gpt":0.3533330351966218,"score_spread":0.29779030853946775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4319931930","genre_codex":"commentary","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009565945,0.2756039,0.0052605025,0.4880937,0.16034251,0.024093902,0.014207839,0.0014412223,0.02139048],"genre_scores_gemma":[0.000031225318,0.011704536,0.0005956676,0.0037159116,0.001199006,0.00016099837,0.012341648,0.000056013043,0.970195],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986656,0.0001549295,0.0003557029,0.0005177738,0.00012726056,0.00017874145],"domain_scores_gemma":[0.9979629,0.000085603955,0.00014836405,0.00067984435,0.0010605456,0.000062744155],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0015945915,0.0001833197,0.00029642825,0.00003876068,0.00007206119,0.000029347024,0.00024418,0.00028199144,0.00044716723],"category_scores_gemma":[0.013926643,0.00016736025,0.0002744579,0.0000919046,0.000024895402,0.0000011284145,0.00013147954,0.00008473612,0.00041390312],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000067052046,0.00001137998,0.0000017058683,0.0016426962,0.000019809038,2.2353981e-7,0.0000011847367,6.584394e-8,0.030115245,0.0000017685286,0.965713,0.002425875],"study_design_scores_gemma":[0.000142748,0.00008841097,0.000056168854,0.00093936664,0.00006041568,9.362037e-7,0.0000031869242,0.0000025747029,0.0014630728,0.00000829006,0.997037,0.00019783006],"about_ca_topic_score_codex":0.000013373055,"about_ca_topic_score_gemma":0.000044695287,"teacher_disagreement_score":0.9488045,"about_ca_system_score_codex":0.000019992325,"about_ca_system_score_gemma":0.00015916648,"threshold_uncertainty_score":0.99437946},"labels":[],"label_agreement":null},{"id":"W4320731536","doi":"10.1016/j.ygeno.2023.110580","title":"Identification of bacterial and fungal pathogens directly from clinical blood cultures using whole genome sequencing","year":2023,"lang":"en","type":"article","venue":"Genomics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Manitoba Health; Public Health Agency of Canada","funders":"","keywords":"Biology; Multilocus sequence typing; Whole genome sequencing; Blood culture; Typing; Antimicrobial; Microbiology; Genome; Pathogen; Genotype; Gene; Genetics; Antibiotics","score_opus":0.04119061093126097,"score_gpt":0.30528474721040705,"score_spread":0.2640941362791461,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4320731536","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986565,0.00013405079,0.00020219418,0.000021984182,0.00040026937,0.00012644714,0.00041851198,0.000024448536,0.000015568497],"genre_scores_gemma":[0.9967883,0.00015588512,0.0013677385,0.000023579929,0.00057298975,0.0000033565807,0.0009600294,0.0000187732,0.00010932591],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988031,0.00010583879,0.0005080946,0.0003726205,0.00006507502,0.00014530007],"domain_scores_gemma":[0.9992985,0.000026067542,0.0002118824,0.00031073505,0.000090212015,0.00006259823],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005308842,0.000101446174,0.00016240723,0.000034556186,0.00009262585,0.000060264796,0.00012335015,0.00014838002,0.00001162413],"category_scores_gemma":[0.0002644511,0.000109897526,0.00007302215,0.00008498805,0.000079293,0.0000067296032,0.00012793057,0.000059961156,0.000010577109],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025484083,0.000018867326,0.004677808,0.000011608576,0.00004269719,0.0000013200352,0.00021538489,0.000043178396,0.99437726,0.00000560208,0.00002479596,0.000555978],"study_design_scores_gemma":[0.0007570497,0.00008832208,0.13586858,0.000014155781,0.00014831353,0.000013554202,0.00058726216,0.0013333805,0.8572962,0.00017767081,0.0033850877,0.00033035918],"about_ca_topic_score_codex":0.000043680004,"about_ca_topic_score_gemma":0.00003771291,"teacher_disagreement_score":0.13708101,"about_ca_system_score_codex":0.000016086291,"about_ca_system_score_gemma":0.00008358411,"threshold_uncertainty_score":0.4481491},"labels":[],"label_agreement":null},{"id":"W4320857187","doi":"10.1128/spectrum.01648-22","title":"Optimizing Treatment of Staphylococcus aureus Bloodstream Infections Following Rapid Molecular Diagnostic Testing and an Antimicrobial Stewardship Program Intervention","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Scotia Health Authority; Dalhousie University","funders":"Research Nova Scotia","keywords":"Antimicrobial stewardship; Staphylococcus aureus; Bloodstream infection; Medicine; Intensive care medicine; Antimicrobial; Antibiotics; Intervention (counseling); Stewardship (theology); Antibiotic resistance; Microbiology; Biology; Nursing; Bacteria","score_opus":0.01784543797623075,"score_gpt":0.2872902020740434,"score_spread":0.26944476409781265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4320857187","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99838054,0.00021049594,0.00017490459,0.00009363697,0.0003136793,0.0005705164,0.00007329899,0.00014289531,0.000040056337],"genre_scores_gemma":[0.99642843,0.000062541774,0.0024336257,0.000020236475,0.00012122454,0.000063982116,0.00079963834,0.000028412216,0.000041907013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985308,0.00019914562,0.0003743541,0.0005226625,0.000030893938,0.00034212557],"domain_scores_gemma":[0.99927264,0.00009382026,0.00015756255,0.00034597365,0.00005545467,0.00007452625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024665357,0.00021362139,0.0002577202,0.00014359882,0.00015382374,0.000052665167,0.00011887375,0.0001805247,0.000010871775],"category_scores_gemma":[0.00042071252,0.00021769555,0.00016598626,0.0002732368,0.00012897694,0.00001093341,0.00009729264,0.00006817658,0.0000054836796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016221602,0.0005201382,0.031424623,0.000028717905,0.00012005823,0.000010096543,0.00010606413,0.000067278714,0.9600608,0.000008515995,0.00002762012,0.007609915],"study_design_scores_gemma":[0.0014989332,0.0038604094,0.019800767,0.0000671283,0.00013557074,0.000038445025,0.00019591338,0.00015820215,0.97299784,0.000057414258,0.0008406498,0.0003487051],"about_ca_topic_score_codex":0.0001831039,"about_ca_topic_score_gemma":0.00025061565,"teacher_disagreement_score":0.012937111,"about_ca_system_score_codex":0.000029226332,"about_ca_system_score_gemma":0.00004384073,"threshold_uncertainty_score":0.8877367},"labels":[],"label_agreement":null},{"id":"W4321202167","doi":"10.1016/j.anaerobe.2023.102701","title":"Anaerobe and anaerobes: New developments (the viewpoints of the new Editors-in-Chief)","year":2023,"lang":"en","type":"editorial","venue":"Anaerobe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Metronidazole; Amplicon; Bacteroides fragilis; Microbiology; Biology; Bacteroides; Gene; Minimum inhibitory concentration; Drug resistance; Antibiotics; Polymerase chain reaction; Genetics; Bacteria","score_opus":0.010995754282433162,"score_gpt":0.25848104756479173,"score_spread":0.24748529328235858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321202167","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.034899082,0.00071415736,0.00005446109,0.0011654889,0.96221334,0.0006249142,0.00006870113,0.00003603178,0.00022380942],"genre_scores_gemma":[0.011070429,0.0022119295,0.0007825109,0.00026384828,0.96340233,0.000034078028,0.00096373126,0.00015860994,0.021112511],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976391,0.00017573968,0.00068546453,0.00069227413,0.0004393642,0.0003680148],"domain_scores_gemma":[0.9981593,0.00019246062,0.00040167428,0.0009312845,0.00016874795,0.00014654928],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006112951,0.00034840705,0.00039717456,0.000075638265,0.00014774784,0.000088499284,0.00082586944,0.000695542,0.000026292611],"category_scores_gemma":[0.0030342236,0.0002513949,0.00015962962,0.00040184907,0.0001532736,0.000009158269,0.0005400902,0.00045839784,0.000028938039],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022771275,0.00002361874,0.0007723237,0.000050737068,0.000058437494,9.614629e-7,0.00014669639,0.0000036185656,0.014180443,0.000012643845,0.98232424,0.0024035212],"study_design_scores_gemma":[0.0005578854,0.00006382052,0.011503293,0.00019473917,0.00004501139,7.7273467e-7,0.00006349234,0.0000027065503,0.0034410385,0.00012917667,0.98370266,0.0002953832],"about_ca_topic_score_codex":0.0020368497,"about_ca_topic_score_gemma":0.0063631744,"teacher_disagreement_score":0.023828652,"about_ca_system_score_codex":0.000045881043,"about_ca_system_score_gemma":0.0010298279,"threshold_uncertainty_score":0.9999938},"labels":[],"label_agreement":null},{"id":"W4321597063","doi":"10.1038/s41598-023-29832-1","title":"Wound swab quality grading is dependent on Gram smear screening approach","year":2023,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; St. Michael's Hospital; Canadian Electricity Association; University of Toronto","funders":"Association of Medical Microbiology and Infectious Disease Canada","keywords":"Grading (engineering); Medicine; Quality assessment; Veterinary medicine; Pathology; External quality assessment; Biology","score_opus":0.0661509673700416,"score_gpt":0.3261378241375305,"score_spread":0.2599868567674889,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321597063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99322647,0.000023370467,0.0009874656,0.00013799728,0.002839033,0.00027065948,0.000007819375,0.00011902263,0.0023881928],"genre_scores_gemma":[0.98640096,0.0000030482956,0.0009639511,0.000097395954,0.00017682539,0.000024966585,0.0006258806,0.0000220348,0.011684938],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99733996,0.000119685596,0.00053662335,0.0011716238,0.00046861867,0.0003634983],"domain_scores_gemma":[0.99822015,0.000019267169,0.00025524813,0.0012081419,0.00016053674,0.00013665012],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00330192,0.00015895272,0.00016014729,0.0001343665,0.0005076169,0.00046653693,0.00019377735,0.00012758332,0.00005716511],"category_scores_gemma":[0.00066494325,0.00015760874,0.0001373805,0.00048481766,0.00014368654,0.000011316153,0.00015941149,0.000117128475,0.00007121459],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019986865,0.00009858759,0.01704072,0.000040531602,0.0000298765,0.00002650381,0.00027444438,0.0001545627,0.9615383,0.00009342439,0.01717483,0.003508201],"study_design_scores_gemma":[0.00075702445,0.00019584813,0.12577385,0.000090532,0.000054360014,0.00025345304,0.0018242053,0.0019504167,0.730847,0.0050902236,0.1317196,0.001443473],"about_ca_topic_score_codex":0.000054757016,"about_ca_topic_score_gemma":0.000020921709,"teacher_disagreement_score":0.23069131,"about_ca_system_score_codex":0.000023250199,"about_ca_system_score_gemma":0.000073708914,"threshold_uncertainty_score":0.64270973},"labels":[],"label_agreement":null},{"id":"W4321748726","doi":"10.1002/phar.2781","title":"Antimicrobial susceptibility testing: An updated primer for clinicians in the era of antimicrobial resistance: Insights from the Society of Infectious Diseases Pharmacists","year":2023,"lang":"en","type":"article","venue":"Pharmacotherapy The Journal of Human Pharmacology and Drug Therapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's College Hospital; University of Waterloo","funders":"","keywords":"Antimicrobial stewardship; Medicine; Antibiotic resistance; Antimicrobial; Intensive care medicine; Clinical microbiology; Antibiotics; Biology; Microbiology","score_opus":0.035832972789346405,"score_gpt":0.35163971009514855,"score_spread":0.31580673730580217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321748726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960857,0.0012195387,0.000043075263,0.0013799804,0.00045005477,0.000675634,0.00012453154,0.00001372551,0.000007765898],"genre_scores_gemma":[0.9930539,0.0031614988,0.00007795087,0.0028790096,0.0006719892,0.000012012926,0.00009027204,0.000025873262,0.000027456617],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99728215,0.001275669,0.00081740704,0.0002537445,0.00014811056,0.00022290947],"domain_scores_gemma":[0.99789256,0.00064239436,0.00077073206,0.0002804345,0.00036210116,0.000051808045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001910164,0.00020936814,0.00034659915,0.000048234957,0.00036667747,0.000030886455,0.00065860915,0.000088179724,0.00004689606],"category_scores_gemma":[0.00004186614,0.0001224563,0.00026045015,0.00030433192,0.00055896846,0.000033653832,0.00004557579,0.00036158971,3.6213365e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019779915,0.00055317645,0.014938732,0.000026868536,0.00029654027,0.0000011102496,0.0038684485,0.000064425716,0.9470656,0.000005017486,0.029847419,0.0013547],"study_design_scores_gemma":[0.011332373,0.00049817795,0.03503105,0.000042322525,0.00031196294,0.000018001881,0.00073066156,0.00021568725,0.94371104,0.0006701197,0.0071512484,0.00028738007],"about_ca_topic_score_codex":0.000046035293,"about_ca_topic_score_gemma":0.00006796304,"teacher_disagreement_score":0.022696171,"about_ca_system_score_codex":0.0000136913995,"about_ca_system_score_gemma":0.00013845085,"threshold_uncertainty_score":0.4993623},"labels":[],"label_agreement":null},{"id":"W4321790146","doi":"10.51731/cjht.2023.581","title":"Dalbavancin (Xydalba)","year":2023,"lang":"en","type":"article","venue":"Canadian Journal of Health Technologies","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus anginosus; Dalbavancin; Streptococcus dysgalactiae; Microbiology; Streptococcus; Medicine; Enterococcus faecalis; Clindamycin; Enterococcus; Streptococcus pyogenes; Staphylococcus aureus; Vancomycin; Linezolid; Streptococcus agalactiae; Antibiotics; Biology; Bacteria","score_opus":0.03387587921961897,"score_gpt":0.291212006580458,"score_spread":0.257336127360839,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321790146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97941625,0.0050022835,0.00022144802,0.014353166,0.00064070104,0.00010258434,0.00001379711,0.00007759476,0.00017215515],"genre_scores_gemma":[0.99900246,0.00020138206,0.00030268636,0.00020605486,0.000023365636,0.000001916793,0.000015030464,0.000008695805,0.00023839022],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99919444,0.000040202947,0.00033187275,0.00011014354,0.000058015892,0.00026532664],"domain_scores_gemma":[0.9993902,0.000010637294,0.00019413707,0.00022539703,0.00012217411,0.000057459936],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068153534,0.00006403813,0.00012878916,0.00024051708,0.00014864985,0.000029438543,0.00026471136,0.00010380362,0.000009962152],"category_scores_gemma":[0.0011462382,0.000060834678,0.000046581157,0.0002579601,0.00008867211,0.0000042973165,0.000023633054,0.00012026948,0.000022132675],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016489743,0.000018342638,0.035246897,0.00011033586,0.000049808343,0.00005520089,0.00026624728,0.000051017974,0.18050033,0.0009402382,0.10804576,0.67469937],"study_design_scores_gemma":[0.00033097985,0.00036890004,0.070743285,0.000070542614,0.0000046951523,0.0001259234,0.0027138987,0.000016410004,0.023073778,0.0019781846,0.9003778,0.00019557124],"about_ca_topic_score_codex":0.00049574696,"about_ca_topic_score_gemma":0.0032807682,"teacher_disagreement_score":0.79233205,"about_ca_system_score_codex":0.000045813907,"about_ca_system_score_gemma":0.0010202682,"threshold_uncertainty_score":0.24807662},"labels":[],"label_agreement":null},{"id":"W4323074825","doi":"10.1016/j.onehlt.2023.100522","title":"Antimicrobial resistance in bacteria isolated from peridomestic Rattus species: A scoping literature review","year":2023,"lang":"en","type":"article","venue":"One Health","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"City University of Hong Kong","keywords":"Biology; Antibiotic resistance; Microbiology; Antimicrobial; One Health; Antibiotics; Medicine; Public health","score_opus":0.028956537531386474,"score_gpt":0.30810695906980945,"score_spread":0.27915042153842295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323074825","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96869135,0.022143463,0.00010000683,0.0074594505,0.00046618783,0.00072248944,0.00017193268,0.00008078752,0.00016434872],"genre_scores_gemma":[0.87382585,0.10879179,0.0030285781,0.0058052214,0.0005688172,0.00004964898,0.0051155896,0.000055855242,0.002758642],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998603,0.00019357514,0.0004242213,0.00042429572,0.000075138676,0.00027980722],"domain_scores_gemma":[0.9993044,0.000022348262,0.00013271539,0.00038945858,0.00006637976,0.000084702304],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042535883,0.00012342578,0.00026860618,0.000056302564,0.000090877824,0.000067437024,0.00013540077,0.000090635884,0.00007647539],"category_scores_gemma":[0.00032664542,0.00013475846,0.000048048805,0.0004796433,0.000029603081,0.000006948937,0.00006218372,0.00012257032,0.00005534126],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007242865,0.00007783783,0.0010219781,0.0033154862,0.000010963101,0.000011224412,0.00033178905,9.967666e-7,0.9813898,0.000024546707,0.013260832,0.00048207637],"study_design_scores_gemma":[0.0046349014,0.00044820708,0.6777327,0.20741285,0.00005198093,0.00003644882,0.00020097269,0.0001727222,0.021099672,0.00024797628,0.085901886,0.002059695],"about_ca_topic_score_codex":0.00006185875,"about_ca_topic_score_gemma":0.00091294234,"teacher_disagreement_score":0.9602902,"about_ca_system_score_codex":0.000041488518,"about_ca_system_score_gemma":0.00021897162,"threshold_uncertainty_score":0.5495291},"labels":[],"label_agreement":null},{"id":"W4323664976","doi":"10.1016/j.jiac.2023.03.001","title":"Adherence to use of blood cultures according to current national guidelines and their impact in patients with community acquired pneumonia: A retrospective cohort","year":2023,"lang":"en","type":"article","venue":"Journal of Infection and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Cohort; Prospective cohort study; Blood culture; Cohort study; Diabetes mellitus; Retrospective cohort study; Internal medicine; Etiology; Disease; Pneumonia severity index; Multivariate analysis; Infectious disease (medical specialty); Intensive care medicine; Antibiotics","score_opus":0.04171152491457185,"score_gpt":0.3403215590271486,"score_spread":0.29861003411257675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323664976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99959975,0.000014010849,0.000100860496,0.00008168322,0.000055983804,0.00012770014,0.0000120974,0.000003901411,0.000003986501],"genre_scores_gemma":[0.9995079,0.00015472848,0.00016750689,0.000101299236,0.00004052606,0.000002731821,0.00001191882,0.000005674785,0.000007682562],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99945617,0.00005638469,0.00024483903,0.00008543669,0.00009375951,0.000063397805],"domain_scores_gemma":[0.9990572,0.000018459234,0.00015176236,0.00006845012,0.00065137434,0.00005276597],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036349584,0.00007687496,0.00014068154,0.00009933376,0.00005093632,0.000037170033,0.000036705598,0.000035676563,0.000002695584],"category_scores_gemma":[0.0003381185,0.000052605483,0.000034044344,0.000189916,0.000020264746,0.000017226213,0.000025105857,0.00006702511,1.5631153e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013735829,0.00008086178,0.7681005,0.0000069461657,0.00003861122,3.956672e-8,0.00023060825,0.000035015782,0.22907837,9.684227e-7,0.00012479267,0.0021659005],"study_design_scores_gemma":[0.000628805,0.0007400127,0.9864587,0.000067083,0.000005465575,0.0000040736795,0.00006840991,0.000015735863,0.011788727,0.000023312468,0.00014231273,0.00005733591],"about_ca_topic_score_codex":0.0001038272,"about_ca_topic_score_gemma":0.000090134105,"teacher_disagreement_score":0.2183582,"about_ca_system_score_codex":0.000020390034,"about_ca_system_score_gemma":0.000031494983,"threshold_uncertainty_score":0.21451893},"labels":[],"label_agreement":null},{"id":"W4361255692","doi":"10.53350/pjmhs2023173182","title":"Antimicrobial Activity of Gram Negative Bacteria in Blood Cultures: A Study with Blood Agar in ICU of LGH, Lahore","year":2023,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Continental (Canada)","funders":"","keywords":"Amikacin; Medicine; Levofloxacin; Cefepime; Imipenem; Meropenem; Ceftazidime; Ciprofloxacin; Microbiology; Blood culture; Piperacillin; Internal medicine; Cefotaxime; Antibiotic resistance; Antibiotics; Biology; Bacteria","score_opus":0.013747120918126302,"score_gpt":0.27231090331314844,"score_spread":0.25856378239502215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4361255692","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993246,0.0000029030257,0.000004449766,0.000035563375,0.000033963373,0.00039869334,0.000026273483,0.000012838888,0.00016069727],"genre_scores_gemma":[0.99938506,0.000013784281,0.00031419905,0.00000977529,0.000020921269,0.000014679372,0.000052808606,0.000010224054,0.00017854405],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905795,0.0001295179,0.00027411152,0.00031118188,0.000079466205,0.0001477814],"domain_scores_gemma":[0.99946594,0.00002168234,0.00012261713,0.0002677293,0.000094946896,0.000027089725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002619368,0.00011432697,0.00022306036,0.00008540519,0.000017841738,0.000013513081,0.00013117702,0.00008831073,0.000018888652],"category_scores_gemma":[0.00017225793,0.000095512194,0.000039295304,0.00038779393,0.00006995181,0.0000065514278,0.00008924137,0.00007389321,0.0000012924676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001683032,0.0010640986,0.13126786,0.000035792706,0.000044754102,0.000004742334,0.0006607176,0.000010362874,0.86659753,0.0000047060967,0.000026520322,0.00011460036],"study_design_scores_gemma":[0.0012995201,0.00035277486,0.360147,0.000025771807,0.000019075194,0.0000019522,0.0005813575,0.0000059650442,0.6374715,0.000005447273,0.000006634932,0.0000830469],"about_ca_topic_score_codex":0.00080607337,"about_ca_topic_score_gemma":0.00703605,"teacher_disagreement_score":0.22912607,"about_ca_system_score_codex":0.000004708814,"about_ca_system_score_gemma":0.000057942667,"threshold_uncertainty_score":0.3926281},"labels":[],"label_agreement":null},{"id":"W4365150401","doi":"10.1099/acmi.0.000539.v2","title":"A multiphasic approach to solve misidentification of Cutibacterium acnes as Atopobium vaginae during routine bacterial screening of platelet concentrates using the VITEK 2 system","year":2023,"lang":"en","type":"preprint","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Canadian Blood Services","funders":"Health Canada; Canadian Blood Services","keywords":"Microbiology; Biology; Bacterial vaginosis; Bacteria; Genetics","score_opus":0.04841929073553315,"score_gpt":0.2937068146998714,"score_spread":0.24528752396433828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4365150401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9823421,0.000059565562,0.015013302,0.00007287987,0.0010269933,0.001114726,0.00019987485,0.00007695841,0.00009356789],"genre_scores_gemma":[0.9901139,0.000013800314,0.007748476,0.000012519037,0.00043617818,0.0000626316,0.0012641146,0.00006528371,0.00028306397],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971748,0.00019389055,0.0011056414,0.00090054283,0.0002733515,0.0003517827],"domain_scores_gemma":[0.99732333,0.00004497303,0.0008513552,0.001120677,0.0005517589,0.000107914726],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007414691,0.00037481298,0.0005597505,0.00012154156,0.00016011493,0.00017590715,0.00064712117,0.0003839329,0.000016286034],"category_scores_gemma":[0.00032853932,0.00032717286,0.00025113174,0.00021556008,0.00018279834,0.0000119704,0.0008774269,0.00021629999,0.0000061820897],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021277979,0.000080863334,0.002081439,0.0009749171,0.00018357985,9.002658e-7,0.00060086645,0.001376247,0.9942911,0.00009418401,0.00003373628,0.000069365684],"study_design_scores_gemma":[0.000618446,0.000045395984,0.017422983,0.00037912244,0.00010628996,0.000023676777,0.0023624918,0.0034255476,0.9751793,0.000012388117,0.000048622496,0.0003757028],"about_ca_topic_score_codex":0.001144293,"about_ca_topic_score_gemma":0.000044601733,"teacher_disagreement_score":0.019111788,"about_ca_system_score_codex":0.000056412882,"about_ca_system_score_gemma":0.00017005921,"threshold_uncertainty_score":0.99991804},"labels":[],"label_agreement":null},{"id":"W4366549700","doi":"10.52609/jmlph.v3i2.71","title":"Prevalence of Positive Blood Cultures in the Emergency Department of a Tertiary Hospital: A Retrospective Single-Centre Study","year":2023,"lang":"en","type":"article","venue":"The Journal of Medicine Law & Public Health","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Piperacillin; Clindamycin; Linezolid; Levofloxacin; Microbiology; Context (archaeology); Emergency department; Staphylococcus epidermidis; Internal medicine; Staphylococcus aureus; Imipenem; Amoxicillin; Tazobactam; Methicillin-resistant Staphylococcus aureus; Vancomycin; Ampicillin; Antibiotic resistance; Antibiotics; Pseudomonas aeruginosa; Biology","score_opus":0.02725813700082758,"score_gpt":0.31780956797522636,"score_spread":0.2905514309743988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366549700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97816765,0.00059193384,0.000012478771,0.020490108,0.00016115603,0.00047404398,0.000013740518,0.000003054032,0.00008581484],"genre_scores_gemma":[0.9990241,0.00042007852,0.000019084058,0.0003182217,0.0001586508,0.0000033133201,0.000010829525,0.0000058930777,0.00003984996],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99785656,0.0008120108,0.0007097236,0.000113851245,0.00033657232,0.00017126503],"domain_scores_gemma":[0.9986102,0.000059744285,0.00064929045,0.00025939627,0.0003562728,0.00006509154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0040092156,0.00008423617,0.00021375676,0.000044033543,0.000065732784,0.000005157415,0.00033461145,0.000032706423,0.00002292304],"category_scores_gemma":[0.0007639811,0.00004431818,0.000050987328,0.00026410757,0.00014044635,0.000009243297,0.00005269417,0.00013656159,3.509436e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026047614,0.0072209476,0.59922373,0.0005583409,0.00052736263,0.000018556595,0.09637676,0.000009373708,0.27950725,0.0011214647,0.013095118,0.0020806005],"study_design_scores_gemma":[0.0011800508,0.0038427538,0.9788467,0.00014442069,0.0000684093,0.000022226006,0.01361436,0.0000034352397,0.0018077369,0.00013544945,0.00027631831,0.000058090067],"about_ca_topic_score_codex":0.00022683242,"about_ca_topic_score_gemma":0.0002876771,"teacher_disagreement_score":0.379623,"about_ca_system_score_codex":0.000025992393,"about_ca_system_score_gemma":0.00012519916,"threshold_uncertainty_score":0.1807243},"labels":[],"label_agreement":null},{"id":"W4367174218","doi":"10.1111/apa.16797","title":"Molecular diagnostics for invasive lung infections in children","year":2023,"lang":"en","type":"letter","venue":"Acta Paediatrica","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Molecular diagnostics; Intensive care medicine; Lung; Pediatrics; Internal medicine; Bioinformatics","score_opus":0.01074932650745979,"score_gpt":0.2524657824682695,"score_spread":0.2417164559608097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367174218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78583527,0.00120107,0.0010313484,0.20201251,0.00299941,0.004415553,0.0018649404,0.00027230734,0.00036760105],"genre_scores_gemma":[0.7005902,0.0041705975,0.0010868192,0.22554013,0.020579554,0.0017252639,0.043937072,0.00049637427,0.001873974],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983788,0.000102772836,0.00038248443,0.00062289304,0.00013238337,0.00038062772],"domain_scores_gemma":[0.99873894,0.00033615952,0.0001876833,0.0005450925,0.00013987161,0.000052247437],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000183227,0.00025839783,0.00024760707,0.00020868712,0.00008377587,0.00007721261,0.0003095498,0.00082464825,0.000012672804],"category_scores_gemma":[0.0037194102,0.00029535271,0.00020739697,0.0002959427,0.000039780578,0.000004353215,0.0001607021,0.0004789461,0.000027293618],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000046416562,0.000041442574,0.043567777,0.000080899146,0.00006978115,0.000009170466,0.0000136594535,0.000009939104,0.011078309,0.0000034631348,0.9450039,0.00011701275],"study_design_scores_gemma":[0.0022938126,0.0005479708,0.0757292,0.000113046,0.0005702319,0.00005208257,0.000026152338,0.000099366334,0.008747483,0.0005432664,0.9090988,0.0021785744],"about_ca_topic_score_codex":0.00007838142,"about_ca_topic_score_gemma":0.00006869568,"teacher_disagreement_score":0.08524504,"about_ca_system_score_codex":0.00004724676,"about_ca_system_score_gemma":0.00021174263,"threshold_uncertainty_score":0.9999499},"labels":[],"label_agreement":null},{"id":"W4367175230","doi":"10.3138/jvme-2022-0125","title":"Veterinary Students’ Knowledge and Awareness of Antimicrobial Stewardship Before and After Clinical Rotations","year":2023,"lang":"en","type":"article","venue":"Journal of Veterinary Medical Education","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Antimicrobial stewardship; Coursework; Antimicrobial; Medicine; Stewardship (theology); Medical education; Antibiotic resistance; Curriculum; Veterinary medicine; Family medicine; Psychology; Political science; Biology; Pedagogy; Microbiology","score_opus":0.07272027726789258,"score_gpt":0.4359494337151906,"score_spread":0.36322915644729803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367175230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982512,0.00020224163,0.00004590236,0.00042303378,0.0009722898,0.00008463548,0.0000050072767,0.000004927174,0.000010737029],"genre_scores_gemma":[0.99852103,0.00038867525,0.00037255307,0.00009351329,0.0004715729,0.000006307382,0.00003188098,0.000009725762,0.000104735715],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99879164,0.00021227152,0.00056966586,0.00016143506,0.00016967855,0.000095340576],"domain_scores_gemma":[0.99919224,0.000053021246,0.00022480755,0.00013376033,0.00022463483,0.00017153125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001154418,0.00008168353,0.00018028347,0.00009139442,0.000048045975,0.000025661853,0.0001430298,0.00013244798,0.000024953419],"category_scores_gemma":[0.0010793558,0.0000742853,0.00006330719,0.00010442901,0.00015451656,0.000016011125,0.00015284149,0.00012131482,0.000002080029],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083045335,0.001158105,0.6063198,0.00050297193,0.000121260564,0.00003108242,0.0014002345,7.6044853e-7,0.2831256,0.000020238098,0.0025444757,0.10394504],"study_design_scores_gemma":[0.00059076067,0.0014052853,0.992033,0.00021221835,0.000029763394,0.000398989,0.00025622477,0.000020916383,0.00042684987,0.000043956963,0.004499927,0.00008208315],"about_ca_topic_score_codex":0.0000049069627,"about_ca_topic_score_gemma":0.000010120069,"teacher_disagreement_score":0.38571328,"about_ca_system_score_codex":0.000009004643,"about_ca_system_score_gemma":0.00048677358,"threshold_uncertainty_score":0.30292666},"labels":[],"label_agreement":null},{"id":"W4377990707","doi":"10.1016/j.clinbiochem.2023.110587","title":"Lack of interference of metronidazole with Roche cobas c502 and c702 chemistry tests","year":2023,"lang":"en","type":"article","venue":"Clinical Biochemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St Joseph's Health Care; London Health Sciences Centre; Western University","funders":"","keywords":"Metronidazole; Analyte; Absorbance; Chromatography; Chemistry; Interference (communication); Antibiotics; Biochemistry","score_opus":0.0787615077882913,"score_gpt":0.3786568023816962,"score_spread":0.2998952945934049,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377990707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998718,0.00014638701,0.00004569218,0.00010553403,0.000047994716,0.00007076412,0.000036591966,0.000023917937,0.00080508797],"genre_scores_gemma":[0.9983258,0.00008417198,0.00038311433,0.00004241995,0.00011743182,0.0000064658225,0.00016805036,0.0000144615515,0.0008580381],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99869746,0.000028918397,0.0005482899,0.00044868048,0.00010947846,0.00016716101],"domain_scores_gemma":[0.9988004,0.00010305661,0.00026840906,0.0005261891,0.00020700098,0.00009493934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046603678,0.0001387786,0.00027217634,0.000015895885,0.0000271877,0.000014310579,0.00023372695,0.00023503698,0.00004686025],"category_scores_gemma":[0.0013621883,0.00012576424,0.00008568358,0.0001845288,0.00044753827,0.0000037338277,0.00020868069,0.0001346331,0.0000068991176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009457978,0.00009086728,0.05468165,0.00024996564,0.00004474532,8.881147e-7,0.000009403907,0.0000012706282,0.9432472,0.0000044443127,0.0005720577,0.0010029175],"study_design_scores_gemma":[0.00049211684,0.00012279864,0.028142076,0.00007855565,0.000029979725,0.0000057439397,0.00011468416,0.000050231978,0.9703792,0.000034340377,0.00040418343,0.00014611037],"about_ca_topic_score_codex":0.000007396302,"about_ca_topic_score_gemma":0.0000036781903,"teacher_disagreement_score":0.027131973,"about_ca_system_score_codex":0.000005819145,"about_ca_system_score_gemma":0.00010861996,"threshold_uncertainty_score":0.5128517},"labels":[],"label_agreement":null},{"id":"W4378348012","doi":"10.3389/fvets.2023.1178522","title":"Assessment of accredited veterinary diagnostic laboratory use of breakpoints for canine and feline Escherichia coli infections in the United States and Canada","year":2023,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Antibiotics; Veterinary medicine; Antibiotic Stewardship; Companion animal; Diagnostic test; Breakpoint; Family medicine; Antibiotic resistance; Microbiology; Biology","score_opus":0.026459866904185676,"score_gpt":0.2954913110581843,"score_spread":0.26903144415399866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378348012","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990051,0.000028211454,0.00026025088,0.00009738971,0.00024139394,0.00021885209,0.0001430827,0.0000034825139,0.0000022730248],"genre_scores_gemma":[0.9974351,0.00016054687,0.0021726247,0.00006129417,0.000012193687,0.0000241544,0.000120240045,0.0000041321337,0.000009737976],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99930376,0.00008705683,0.00019706629,0.00019567639,0.00008950465,0.00012691386],"domain_scores_gemma":[0.99947166,0.00015121873,0.000072841656,0.0001624312,0.00010922092,0.000032609358],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056638545,0.00006397593,0.00010023986,0.00016367767,0.00006414571,0.000022630084,0.00012053488,0.000028022852,6.6987434e-7],"category_scores_gemma":[0.00092546403,0.00005799348,0.000008126417,0.0007375066,0.00026434567,0.000018019622,0.00009401157,0.000043183034,1.13472325e-8],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003250362,0.000047797457,0.2405508,0.00006704989,0.000005040866,0.0000047980493,0.00014414109,0.0003579763,0.7577864,0.0000076862425,0.000811067,0.00018475918],"study_design_scores_gemma":[0.00028432,0.00064349134,0.9844705,0.000030180983,0.0000041051926,0.0000055661208,0.0006591098,0.0105888015,0.0010335164,0.000011386221,0.002195159,0.00007385266],"about_ca_topic_score_codex":0.03557563,"about_ca_topic_score_gemma":0.011875055,"teacher_disagreement_score":0.75675285,"about_ca_system_score_codex":0.000026995747,"about_ca_system_score_gemma":0.00032236686,"threshold_uncertainty_score":0.97084653},"labels":[],"label_agreement":null},{"id":"W4378471835","doi":"10.3390/diagnostics13111849","title":"Evaluation of the Liquid Colony™ Produced by the FAST System for Shortening the Time of Bacterial Identification and Phenotypic Antimicrobial Susceptibility Testing and Detection of Resistance Mechanisms from Positive Blood Cultures","year":2023,"lang":"en","type":"article","venue":"Diagnostics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Broth microdilution; Concordance; Clinical microbiology; Blood culture; Microbiology; Colony-forming unit; Liquid culture; Bacteria; Biology; Antimicrobial; Medicine; Minimum inhibitory concentration; Genetics; Antibiotics","score_opus":0.014979341955895467,"score_gpt":0.2484411843567056,"score_spread":0.23346184240081014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378471835","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976616,0.00010021144,0.00067604356,0.00007430885,0.00017495676,0.0008689392,0.00043208504,0.000008402111,0.0000034466289],"genre_scores_gemma":[0.9995201,0.000013312389,0.00016931625,0.0000060936923,0.00007027792,0.000039027887,0.00015974902,0.000008695465,0.0000133802505],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888396,0.00030933504,0.00032855876,0.00023853523,0.0001592219,0.00008038378],"domain_scores_gemma":[0.9982061,0.0004256379,0.00035765689,0.0002819379,0.00071605964,0.000012613478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014828289,0.00008081052,0.000118605334,0.000012560296,0.0001767473,0.000028043969,0.00012347216,0.00007341503,9.4995085e-7],"category_scores_gemma":[0.0043743276,0.00005322808,0.000034403514,0.00013000926,0.0001444858,0.000006792092,0.00007308698,0.00004078795,1.4364527e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009491014,0.000027237285,0.00045348547,0.000061758175,0.00004062397,1.2955641e-8,0.00036565683,0.000019436826,0.9983237,0.000014811509,0.000054192773,0.0005442141],"study_design_scores_gemma":[0.0002923094,0.00008619732,0.03218899,0.00007104496,0.00027462238,6.993055e-7,0.00040899432,0.0011998512,0.9653497,0.00007248744,0.0000029554221,0.000052188196],"about_ca_topic_score_codex":0.00006212281,"about_ca_topic_score_gemma":0.00014379423,"teacher_disagreement_score":0.032974,"about_ca_system_score_codex":0.000011909854,"about_ca_system_score_gemma":0.000045985802,"threshold_uncertainty_score":0.5236795},"labels":[],"label_agreement":null},{"id":"W4380154035","doi":"10.1016/j.ijpsycho.2023.05.219","title":"ξπ: A Nonparametric Model for EEG/MEG Power Spectra Decomposition and Quantification","year":2023,"lang":"en","type":"article","venue":"International Journal of Psychophysiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Political science; Legislation; Food and drug administration; Public administration; Diagnostic test; Medicine; Law; Environmental health; Pediatrics","score_opus":0.025653223125754805,"score_gpt":0.3561735650099468,"score_spread":0.330520341884192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4380154035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9573732,0.00004470719,0.040435582,0.0009313273,0.0010384761,0.0000918521,0.000025909305,0.00000859332,0.00005033603],"genre_scores_gemma":[0.99525493,0.00014131852,0.0038467648,0.00019060205,0.00027164991,0.0000072543085,0.00013568376,0.000010147022,0.00014165464],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992639,0.000035622226,0.00032200938,0.00017930099,0.0000999289,0.000099265686],"domain_scores_gemma":[0.9991184,0.000048238664,0.00024209224,0.00011272043,0.0004350927,0.000043489996],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026524256,0.0000734152,0.00010713371,0.00019306912,0.00003897844,0.00003588115,0.00019268786,0.000080412094,0.000008856413],"category_scores_gemma":[0.00024978787,0.00007105212,0.00009012031,0.00009666965,0.000041252097,0.000011881722,0.000028972065,0.000059698814,0.000008438666],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031523418,0.000056662106,0.0003344975,0.000004462377,0.000060267663,8.2776603e-7,0.000055172593,0.0005588924,0.99442744,0.0003656011,0.001955107,0.0018658235],"study_design_scores_gemma":[0.00896031,0.0029861163,0.489598,0.00013407985,0.00013965242,0.00048320464,0.0005122592,0.20945792,0.22835018,0.045427583,0.0128411325,0.001109553],"about_ca_topic_score_codex":0.0000019495872,"about_ca_topic_score_gemma":0.0000027211947,"teacher_disagreement_score":0.7660773,"about_ca_system_score_codex":0.000014784694,"about_ca_system_score_gemma":0.000036952275,"threshold_uncertainty_score":0.28974214},"labels":[],"label_agreement":null},{"id":"W4380992985","doi":"10.1099/acmi.0.000539.v3","title":"A multiphasic approach to solve misidentification of Cutibacterium acnes as Atopobium vaginae during routine bacterial screening of platelet concentrates using the VITEK 2 system","year":2023,"lang":"en","type":"article","venue":"Access Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Blood Services; University of Ottawa","funders":"Health Canada; Canadian Blood Services","keywords":"Microbiology; Biology","score_opus":0.0336209227883743,"score_gpt":0.30039849383794504,"score_spread":0.2667775710495707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4380992985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99691963,0.0000527538,0.0017646617,0.000070802584,0.00049946713,0.00049496035,0.00012406951,0.000041406372,0.000032264874],"genre_scores_gemma":[0.9978113,0.000010262172,0.00089069305,0.000025847448,0.00018641877,0.000024816894,0.0009641584,0.000025347153,0.00006112832],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983601,0.00016498209,0.00060730014,0.00049124286,0.000057949335,0.00031843982],"domain_scores_gemma":[0.99871725,0.000043750042,0.00041159516,0.00050613895,0.00026736435,0.000053894153],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042801327,0.00018902482,0.00031637118,0.00010308354,0.00015161948,0.000073782,0.00055817224,0.00017779952,0.000013457702],"category_scores_gemma":[0.00018612102,0.000161652,0.00010316739,0.00034489017,0.00020780298,0.000021012018,0.00036747384,0.00008016115,0.000007756773],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001799522,0.000043137083,0.0057061897,0.00017649653,0.00007693562,7.714162e-7,0.00032994346,0.000215583,0.99306947,0.00005267781,0.00005936497,0.0000894611],"study_design_scores_gemma":[0.00056721875,0.00004463103,0.02076393,0.000056447192,0.000030972606,0.000056838606,0.00078883575,0.00027486053,0.97703445,0.000003459785,0.00021363967,0.00016468743],"about_ca_topic_score_codex":0.00029736108,"about_ca_topic_score_gemma":0.000022265613,"teacher_disagreement_score":0.01603501,"about_ca_system_score_codex":0.00002349836,"about_ca_system_score_gemma":0.000062428684,"threshold_uncertainty_score":0.65919775},"labels":[],"label_agreement":null},{"id":"W4383620317","doi":"10.2147/idr.s421409","title":"Clostridium ramosum Bacteremia in an Immunocompetent Patient with SARS-CoV-2 Infection: A Case Report","year":2023,"lang":"en","type":"article","venue":"Infection and Drug Resistance","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Bacteremia; Medicine; Microbiology; Virology; Biology; Antibiotics","score_opus":0.01827454047194562,"score_gpt":0.2794314352497775,"score_spread":0.2611568947778319,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4383620317","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864286,0.000031567073,0.00008886851,0.0001413198,0.0002605609,0.00023346119,0.0000053329045,0.00008015893,0.0005158688],"genre_scores_gemma":[0.9989744,0.00004976387,0.000117218035,0.000074983225,0.000077295546,0.000050239876,0.00012916459,0.000015909913,0.00051104365],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989032,0.00011076836,0.0003038809,0.0004187363,0.000086758504,0.0001766372],"domain_scores_gemma":[0.9993414,0.00001223681,0.0001281647,0.0003453688,0.00012428832,0.00004852093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029676704,0.00013364482,0.00012157424,0.000091756774,0.0001494681,0.000095131945,0.000032072185,0.00008091158,0.000007020895],"category_scores_gemma":[0.00009459976,0.00012881123,0.000036318732,0.00030623193,0.000057515674,0.000021725258,0.00004276591,0.000103109196,0.000007699431],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030644683,0.00017534879,0.14406715,0.00008552888,0.000026232896,0.0021410286,0.00033870534,0.000029731273,0.8489879,0.000052300657,0.001519666,0.0022699984],"study_design_scores_gemma":[0.0020642013,0.00041705402,0.47274333,0.00017882806,0.00003449036,0.010244497,0.00024510975,0.00017919093,0.40800834,0.00012905296,0.10483983,0.0009160889],"about_ca_topic_score_codex":0.00058151386,"about_ca_topic_score_gemma":0.0144381635,"teacher_disagreement_score":0.4409795,"about_ca_system_score_codex":0.00003575455,"about_ca_system_score_gemma":0.00005098123,"threshold_uncertainty_score":0.8056834},"labels":[],"label_agreement":null},{"id":"W4385239671","doi":"10.22541/au.169029172.22937237/v1","title":"Cultivation-free and sequencing-free protocol for the simultaneous detection and typing of Serratia marcescens: a rapid and cost-effective tool for large environmental/clinical screenings","year":2023,"lang":"en","type":"preprint","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Blood Services; University of Ottawa","funders":"Fondazione Romeo ed Enrica Invernizzi; Università degli Studi di Milano","keywords":"Serratia marcescens; Typing; Biology; Outbreak; Protocol (science); Multilocus sequence typing; Microbiology; Medicine; Virology; Genetics; Genotype; Escherichia coli; Gene; Pathology","score_opus":0.06031849365427447,"score_gpt":0.34697776268211994,"score_spread":0.28665926902784544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385239671","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.541465,0.00009135714,0.13828608,0.0005237142,0.00024111848,0.31831387,0.0009902338,0.00007048446,0.000018175704],"genre_scores_gemma":[0.8214495,0.00006640868,0.007728921,0.00015260531,0.00028247965,0.16954334,0.00026366647,0.00005479792,0.00045822875],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.998612,0.00010683967,0.0004524789,0.0006014746,0.00006847547,0.00015874962],"domain_scores_gemma":[0.99833506,0.0007153599,0.00029873208,0.000501317,0.00010461617,0.000044916043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010387533,0.00019368339,0.00023928253,0.000030915904,0.00019706928,0.00009312701,0.00016921315,0.00030638184,0.000005352719],"category_scores_gemma":[0.0037760716,0.00015658177,0.000086061096,0.000025761221,0.0001461546,0.0000068353793,0.0006862773,0.0001479624,1.6935724e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018305978,0.00012043254,0.009473632,0.001821522,0.00038414347,4.58875e-7,0.00043145247,0.000069489986,0.8943933,0.00006730389,0.0007340652,0.09067356],"study_design_scores_gemma":[0.035582352,0.005886604,0.21361658,0.0013993356,0.0009588367,0.00006954752,0.004297079,0.34702483,0.31496212,0.0065818946,0.0665269,0.003093945],"about_ca_topic_score_codex":0.00004914981,"about_ca_topic_score_gemma":0.00029703265,"teacher_disagreement_score":0.57943124,"about_ca_system_score_codex":0.000022439232,"about_ca_system_score_gemma":0.000039640163,"threshold_uncertainty_score":0.6385219},"labels":[],"label_agreement":null},{"id":"W4385761217","doi":"10.1186/s12941-023-00617-8","title":"Evaluation of the liquid colony for identification and antimicrobial susceptibility testing directly from positive blood cultures","year":2023,"lang":"en","type":"article","venue":"Annals of Clinical Microbiology and Antimicrobials","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Antimicrobial; Sepsis; Medicine; Blood culture; Gram staining; Microbiology; Gram-positive bacteria; Biology; Antibiotics; Internal medicine","score_opus":0.131443821382313,"score_gpt":0.4134936600988925,"score_spread":0.2820498387165795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385761217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99691856,0.00019032635,0.000036121317,0.0009231537,0.0003366802,0.0006507606,0.00090855383,0.000014456049,0.000021402451],"genre_scores_gemma":[0.9983766,0.00023989899,0.0003443508,0.00031694627,0.00015341808,0.0000113691995,0.00048100142,0.000012169069,0.000064265616],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972839,0.0008726235,0.0010339272,0.0005543992,0.00005940118,0.00019575444],"domain_scores_gemma":[0.9970831,0.00061595597,0.00069646223,0.00034191602,0.0012185315,0.00004397966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0053077536,0.0001508675,0.0004155905,0.000038888313,0.00016586007,0.00002267503,0.00019745974,0.00032686387,0.000006594136],"category_scores_gemma":[0.007921369,0.00012232433,0.00017868658,0.00015876375,0.0006316708,0.000011702807,0.0001942054,0.00009639235,0.0000013879096],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022781442,0.00013882316,0.012408291,0.000044928373,0.00014897574,5.7790846e-8,0.000072969895,0.0000099538665,0.9836789,0.000014893352,0.0016906154,0.001563779],"study_design_scores_gemma":[0.0007267333,0.00023938688,0.14925238,0.00007313614,0.0001946804,0.0000040275536,0.000030582592,0.000052463,0.84894365,0.0001550995,0.00021065379,0.00011718393],"about_ca_topic_score_codex":0.00007761442,"about_ca_topic_score_gemma":0.00011754348,"teacher_disagreement_score":0.1368441,"about_ca_system_score_codex":0.000001789025,"about_ca_system_score_gemma":0.0001312048,"threshold_uncertainty_score":0.9483191},"labels":[],"label_agreement":null},{"id":"W4385854620","doi":"10.1139/bcb-2023-0059","title":"Automatic detection of <i>Cryptosporidium</i> in optical microscopy images using YOLOv5<i>x</i>: a comparative study","year":2023,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Ministerio de Ciencia, Tecnología e Innovación","keywords":"Artificial intelligence; Python (programming language); Phase contrast microscopy; Microscopy; Optical microscope; Contrast (vision); Computer science; Pattern recognition (psychology); Confusion matrix; Microscope; Computer vision; Optics; Physics","score_opus":0.022697410639647003,"score_gpt":0.3049991554705646,"score_spread":0.28230174483091763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385854620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99924105,0.00014471186,0.00008905708,0.0000109825205,0.00009250527,0.00018455292,0.000017405428,0.000020807407,0.0001989035],"genre_scores_gemma":[0.99935156,0.000027698135,0.00037237495,0.000011241425,0.000053416188,0.000013167239,0.00007935321,0.000007244407,0.00008391779],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902225,0.00008323117,0.00030846838,0.00036664354,0.000039153907,0.00018025062],"domain_scores_gemma":[0.9995496,0.000031141084,0.000105426596,0.0002137756,0.000053673517,0.00004634118],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027765307,0.00012759316,0.0002067661,0.00004489695,0.00005227329,0.000012900824,0.00009875934,0.0001617075,0.000010000395],"category_scores_gemma":[0.00007487078,0.00012852321,0.000037594204,0.00018854337,0.00015159001,0.0000032547773,0.00010189409,0.000078336634,0.000003485865],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047124977,0.00014722947,0.012755808,0.00005801474,0.000011646822,0.0000012952228,0.00012677898,0.00000448046,0.9863636,0.0000015480772,0.000017979764,0.00046452947],"study_design_scores_gemma":[0.0005009724,0.00019096375,0.009945828,0.000009669962,0.000012797151,0.000004632959,0.001042175,0.0003540644,0.9877146,0.000019410538,0.000080620805,0.0001242769],"about_ca_topic_score_codex":0.000037125435,"about_ca_topic_score_gemma":0.0000110003275,"teacher_disagreement_score":0.0028099807,"about_ca_system_score_codex":0.00001058866,"about_ca_system_score_gemma":0.000042583335,"threshold_uncertainty_score":0.52410245},"labels":[],"label_agreement":null},{"id":"W4386102039","doi":"10.1136/bmjoq-2022-002170","title":"Improving wound swab collection in paediatric patients: a quality improvement project","year":2023,"lang":"en","type":"article","venue":"BMJ Open Quality","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"London Health Sciences Centre","keywords":"Medicine; Psychological intervention; Audit; Emergency medicine; Health care; Wound care; Medical emergency; Quality management; Intensive care medicine; Nursing; Operations management","score_opus":0.08745011723018871,"score_gpt":0.41524873834929815,"score_spread":0.32779862111910946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386102039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99571705,0.000007243488,0.00010410985,0.0001697236,0.00036503578,0.0028669024,0.00004330508,0.000042267835,0.00068436505],"genre_scores_gemma":[0.9964645,0.000009692632,0.00036046343,0.0001891759,0.00013944524,0.0005794271,0.00065016234,0.000017785636,0.001589334],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9974436,0.0006167171,0.0008127287,0.00061297906,0.00021807336,0.00029587097],"domain_scores_gemma":[0.99870557,0.000059260467,0.0004049274,0.0005789761,0.00019419912,0.000057046578],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0045077577,0.00015026444,0.00023526748,0.00010119095,0.0001585652,0.00021347184,0.00034907108,0.00014346042,0.000029830162],"category_scores_gemma":[0.0030254757,0.00015514786,0.00007779474,0.0006843286,0.000033918466,0.00002403853,0.0005822612,0.00010887555,0.000032987853],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070370873,0.0007163927,0.32817933,0.00037109753,0.00004186195,0.0000015770647,0.0006851276,0.00001006648,0.5716031,0.00015750116,0.005784124,0.09174612],"study_design_scores_gemma":[0.0021286902,0.0002674563,0.98159945,0.000015289159,0.000008831306,4.807223e-7,0.0009246608,0.00019820366,0.011753694,0.00017164629,0.0024654025,0.0004661789],"about_ca_topic_score_codex":0.0067283083,"about_ca_topic_score_gemma":0.0037260782,"teacher_disagreement_score":0.65342015,"about_ca_system_score_codex":0.0001072361,"about_ca_system_score_gemma":0.0002858852,"threshold_uncertainty_score":0.999886},"labels":[],"label_agreement":null},{"id":"W4386311025","doi":"10.2139/ssrn.4552752","title":"Rapid Identification of Salmonella Serovars Enteritidis and Typhimurium Using Whole Cell Matrix Assisted Laser Desorption Ionization – Time of Flight Mass Spectrometry (MALDI-TOF MS) Coupled with Multivariate Analysis and Artificial Intelligence","year":2023,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Salmonella enteritidis; Mass spectrometry; Chromatography; Salmonella; Matrix-assisted laser desorption/ionization; Matrix (chemical analysis); Chemistry; Analytical Chemistry (journal); Time-of-flight mass spectrometry; Identification (biology); Multivariate statistics; Ionization; Desorption; Biology; Computer science; Bacteria; Adsorption","score_opus":0.017289667059167065,"score_gpt":0.2668998754181003,"score_spread":0.24961020835893322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386311025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78711915,0.00041551093,0.212064,0.000043955526,0.000084483065,0.00020532709,0.00005374137,0.000011609718,0.0000022096592],"genre_scores_gemma":[0.9952051,0.0014277635,0.002407287,0.0000026185135,0.00010762203,0.00000479287,0.0005680753,0.00003705458,0.00023966638],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976588,0.00023289006,0.00086814084,0.0005310793,0.00023061103,0.00047851013],"domain_scores_gemma":[0.9979897,0.000030977182,0.0011228197,0.00034563927,0.00044400795,0.000066823224],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015750297,0.00023926275,0.0004136666,0.00042977766,0.00011658248,0.000121587545,0.00018328287,0.00026462955,0.000016944095],"category_scores_gemma":[0.0001256527,0.00024119373,0.00013745196,0.0005648122,0.00011489153,0.000019710948,0.00013149662,0.00048172378,0.0000021630117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002255222,0.0000916782,0.0028347194,0.00012023229,0.00055243564,7.319101e-7,0.000078349956,0.0022541268,0.99331087,0.00005165495,7.898127e-7,0.000478917],"study_design_scores_gemma":[0.00061389274,0.00051357783,0.044026114,0.0001811995,0.002077469,0.000080040285,0.0010182132,0.106157094,0.8390692,0.005600569,0.0000038122416,0.0006588091],"about_ca_topic_score_codex":0.00014441191,"about_ca_topic_score_gemma":0.00023290704,"teacher_disagreement_score":0.20965672,"about_ca_system_score_codex":0.00014045225,"about_ca_system_score_gemma":0.00042976986,"threshold_uncertainty_score":0.9835595},"labels":[],"label_agreement":null},{"id":"W4386825271","doi":"10.1007/s11606-023-08407-w","title":"Derivation and External Validation of the Ottawa Bloodstream Infection Model for Acutely Ill Adults","year":2023,"lang":"en","type":"article","venue":"Journal of General Internal Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Carleton University; Ottawa Hospital; University of Ottawa","funders":"","keywords":"Medicine; Bloodstream infection; Odds ratio; Renal function; Creatinine; Internal medicine; Emergency medicine; Emergency department; Statistics","score_opus":0.02514357537247505,"score_gpt":0.3036345160991831,"score_spread":0.2784909407267081,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386825271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97960585,0.0000487724,0.018645933,0.0010202378,0.0005369428,0.000098074,0.0000064676146,0.0000033147128,0.000034391895],"genre_scores_gemma":[0.99705905,0.00012638274,0.0010261218,0.000151476,0.00073585083,0.0000026369116,0.00001717928,0.00000763802,0.0008736472],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992572,0.000041114807,0.00041814943,0.000095598756,0.000116163785,0.00007175796],"domain_scores_gemma":[0.9989611,0.000020977253,0.0004257199,0.0000985738,0.00045435058,0.000039289338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044488633,0.00006730178,0.00011986256,0.00006616052,0.00003915745,0.000010294054,0.00009670237,0.00005267333,0.000005409412],"category_scores_gemma":[0.0007432159,0.000044439344,0.00006782897,0.0000752899,0.000053141794,0.00001127103,0.00003473112,0.000050656767,2.625695e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015148605,0.000019460827,0.010427157,0.000026905793,0.000029551671,2.2674136e-7,0.00012815344,0.00048440177,0.98077625,0.000028952341,0.0026665851,0.0052608848],"study_design_scores_gemma":[0.0024819141,0.0009964695,0.15912887,0.00043105995,0.000104150786,0.00012740731,0.00006424582,0.050036818,0.784056,0.0009927028,0.0014622139,0.000118121214],"about_ca_topic_score_codex":0.000066303015,"about_ca_topic_score_gemma":0.000028999346,"teacher_disagreement_score":0.19672021,"about_ca_system_score_codex":0.000010677843,"about_ca_system_score_gemma":0.00003028261,"threshold_uncertainty_score":0.18121839},"labels":[],"label_agreement":null},{"id":"W4386874780","doi":"10.3138/jammi-2022-0038","title":"Population-based study of <i>Morganella-Proteus-Providencia</i> group bloodstream infections","year":2023,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Royal Inland Hospital","funders":"","keywords":"Providencia; Morganella morganii; Proteus mirabilis; Incidence (geometry); Population; Medicine; Epidemiology; Internal medicine; Demography; Proteus; Pediatrics; Biology; Pseudomonas aeruginosa; Environmental health; Enterobacteriaceae; Genetics","score_opus":0.005125326868442997,"score_gpt":0.22483349486936788,"score_spread":0.21970816800092488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386874780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981825,0.00005152699,0.000012371593,0.0009837761,0.0005674171,0.0001471224,0.00004339511,0.00000432204,0.00000760706],"genre_scores_gemma":[0.99954844,0.000023251072,0.0000031744864,0.00022740076,0.00010257018,0.0000031499353,0.000042013184,0.00000543875,0.000044560857],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988102,0.00031222697,0.00046556914,0.00010836919,0.00020160152,0.0001020331],"domain_scores_gemma":[0.99863815,0.00014760235,0.0007025361,0.00014084933,0.00026875755,0.00010210952],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007908918,0.00007291883,0.0001840408,0.00005459632,0.00010496016,0.000007386355,0.0001547118,0.00011867858,0.000025957374],"category_scores_gemma":[0.003834044,0.000056761193,0.00007739785,0.00019282529,0.000032872158,0.000005266307,0.000059724065,0.00013573529,2.1381459e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024718593,0.00024359433,0.9379986,0.000030375199,0.0001046218,0.000001311394,0.000019128875,0.00012939199,0.05824262,0.000008831213,0.0030487373,0.00014806495],"study_design_scores_gemma":[0.0013128117,0.00033521146,0.99417335,0.000046583897,0.00012126662,0.000009520791,0.00014013759,0.00004251589,0.002416263,0.000050549548,0.0012688807,0.000082919825],"about_ca_topic_score_codex":0.029225737,"about_ca_topic_score_gemma":0.18825145,"teacher_disagreement_score":0.15902571,"about_ca_system_score_codex":0.00007827189,"about_ca_system_score_gemma":0.0007090976,"threshold_uncertainty_score":0.9772387},"labels":[],"label_agreement":null},{"id":"W4386989428","doi":"10.1016/j.mimet.2023.106827","title":"Rapid identification of Salmonella serovars Enteritidis and Typhimurium using whole cell matrix assisted laser desorption ionization – Time of flight mass spectrometry (MALDI-TOF MS) coupled with multivariate analysis and artificial intelligence","year":2023,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Society for Anthropological Sciences; Ontario Ministry of Agriculture, Food and Rural Affairs; Ontario Agri-Food Innovation Alliance; University of Guelph; SAS Institute","keywords":"Salmonella enteritidis; Principal component analysis; Serotype; Salmonella; Matrix-assisted laser desorption/ionization; Mass spectrometry; Multivariate statistics; Artificial intelligence; Chromatography; Chemistry; Biology; Computer science; Microbiology; Machine learning; Desorption; Bacteria; Genetics","score_opus":0.033034534241993825,"score_gpt":0.3295097356143049,"score_spread":0.2964752013723111,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386989428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7559087,0.00012331689,0.24376705,0.000030796244,0.000050140028,0.00008697685,0.000026297193,0.000004943078,0.0000017592779],"genre_scores_gemma":[0.8790865,0.0001541635,0.120576724,0.0000056895797,0.000040073202,8.4973885e-7,0.00008940245,0.000008304426,0.00003830761],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99821866,0.00054233655,0.0007857592,0.00025080485,0.00007986671,0.00012255507],"domain_scores_gemma":[0.99843746,0.00011812416,0.00085964677,0.00015680898,0.0003739059,0.000054051296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001855342,0.00012384764,0.0003619977,0.00026816787,0.00005445303,0.00003790454,0.000107563304,0.00015814912,0.00003224164],"category_scores_gemma":[0.0003792422,0.00009773058,0.000106079795,0.0007373856,0.0001374464,0.000016036947,0.000055773115,0.000091637135,0.0000010576078],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002601427,0.00008403251,0.0024253593,0.00004394801,0.0001483723,0.0000012356619,0.00004748385,0.00045135673,0.99524593,0.0000038686635,0.0000025184286,0.0012857625],"study_design_scores_gemma":[0.00018491616,0.00026802748,0.051265094,0.000025514331,0.00027322382,0.000024346235,0.00012720043,0.008486018,0.9391453,0.0000853834,0.000010324242,0.000104603125],"about_ca_topic_score_codex":0.000008813784,"about_ca_topic_score_gemma":0.000002085713,"teacher_disagreement_score":0.12319033,"about_ca_system_score_codex":0.000016801821,"about_ca_system_score_gemma":0.000026757416,"threshold_uncertainty_score":0.39853373},"labels":[],"label_agreement":null},{"id":"W4388002022","doi":"10.1038/s41467-023-42563-1","title":"Hierarchical AI enables global interpretation of culture plates in the era of digital microbiology","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Surgical Specialties (Canada)","funders":"Ministero dell’Istruzione, dell’Università e della Ricerca","keywords":"Automation; Interpretation (philosophy); Computer science; Hierarchy; Identification (biology); Data science; Task (project management); Clinical microbiology; Artificial intelligence; Scale (ratio); Systems engineering; Biology; Engineering; Geography; Microbiology; Cartography; Ecology","score_opus":0.013232766754592633,"score_gpt":0.3076731498577104,"score_spread":0.29444038310311776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388002022","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944421,0.00086657604,0.00007587081,0.0034030864,0.00006686666,0.00015225599,0.0002209454,0.000012512665,0.0007597955],"genre_scores_gemma":[0.9976106,0.00013655957,0.0004117141,0.00015946536,0.000015761074,0.000009760898,0.0016256615,0.0000032031428,0.000027222317],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99941915,0.00013546889,0.00022027777,0.000110767134,0.000038480466,0.00007586449],"domain_scores_gemma":[0.9990614,0.00008014513,0.000080546226,0.0006483212,0.000118192605,0.0000113813],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020202906,0.00005627314,0.00008570208,0.000023790564,0.00004553209,0.000018152421,0.00060866616,0.00019386566,0.0000022905544],"category_scores_gemma":[0.0005636488,0.00004310645,0.000051778366,0.00029200318,0.00016953134,0.0000066210537,0.00018447064,0.00028329995,0.0000026984649],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054717373,0.00017804373,0.03706147,0.000025625637,0.000033590983,2.3407225e-7,0.0011378801,0.000031000352,0.948004,0.006004699,0.0040342375,0.0034345111],"study_design_scores_gemma":[0.0027275323,0.0008675247,0.6962443,0.00038641578,0.00012396689,0.000115464645,0.008032443,0.005316075,0.12530734,0.01782539,0.14203697,0.0010165708],"about_ca_topic_score_codex":0.000010198126,"about_ca_topic_score_gemma":0.00031192525,"teacher_disagreement_score":0.8226966,"about_ca_system_score_codex":0.000007228107,"about_ca_system_score_gemma":0.00003798249,"threshold_uncertainty_score":0.17578301},"labels":[],"label_agreement":null},{"id":"W4388141019","doi":"10.1099/jmm.0.001768","title":"Genomic analyses of Bacteroides fragilis: subdivisions I and II represent distinct species","year":2023,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Trent University; Nottingham Trent University","keywords":"Bacteroides fragilis; Biology; GenBank; Genome; Microbiology; Phylogenetic tree; Genetics; Gene; Antibiotics","score_opus":0.048458735583499814,"score_gpt":0.3375039322541854,"score_spread":0.28904519667068557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388141019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99745977,0.00049471273,0.00013240754,0.001511052,0.00029652056,0.000039757957,0.000023490498,0.0000049755336,0.000037299058],"genre_scores_gemma":[0.99849516,0.0006549268,0.00018287131,0.00008013242,0.00026125542,6.629176e-7,0.00006150338,0.0000065597883,0.0002569504],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99888957,0.00014982157,0.00055777846,0.00016718903,0.00009414579,0.00014149252],"domain_scores_gemma":[0.99916726,0.000105355444,0.00029038545,0.00017811089,0.00014396104,0.000114906834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090498687,0.000084044856,0.0002599493,0.0000985076,0.00006578722,0.0000112984835,0.00025177505,0.00016798901,0.00019951155],"category_scores_gemma":[0.0021701287,0.000063622116,0.000108614106,0.00010510097,0.00027135256,0.0000035772127,0.00029403414,0.00013972983,0.000003849022],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003517902,0.00004638693,0.01624064,0.000016431837,0.00006593396,0.0000072494813,0.00006115824,0.0000014934003,0.9778856,0.000016015256,0.0045835264,0.0010403832],"study_design_scores_gemma":[0.0013504325,0.0009373172,0.616749,0.00013748024,0.00010134714,0.00068425975,0.0005599369,0.000074203694,0.32080534,0.00021683372,0.058141023,0.00024286618],"about_ca_topic_score_codex":0.000022944698,"about_ca_topic_score_gemma":0.000025627429,"teacher_disagreement_score":0.65708023,"about_ca_system_score_codex":0.000007803992,"about_ca_system_score_gemma":0.000090890244,"threshold_uncertainty_score":0.25980034},"labels":[],"label_agreement":null},{"id":"W4388418561","doi":"10.1186/s44280-023-00024-w","title":"Antimicrobial susceptibility testing in veterinary medicine: performance, interpretation of results, best practices and pitfalls","year":2023,"lang":"en","type":"article","venue":"One Health Advances","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Clinical microbiology; Medicine; Medical physics; Biology; Microbiology","score_opus":0.08264879458315796,"score_gpt":0.377780613659903,"score_spread":0.295131819076745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388418561","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997801,0.00054011244,0.00002428232,0.0008947131,0.00015197562,0.00020281452,0.00001646739,0.000018819868,0.00034982857],"genre_scores_gemma":[0.9954303,0.002325378,0.001832918,0.00009740203,0.00008228068,0.0000080425325,0.00013948814,0.000007669632,0.00007655847],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99877286,0.00014422231,0.00049786817,0.00032565024,0.00008302611,0.00017638519],"domain_scores_gemma":[0.999014,0.00013409276,0.0005047445,0.00019448386,0.00010056758,0.00005209331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011972894,0.00008519532,0.00017447678,0.00008190163,0.00007460766,0.000010019282,0.00008116499,0.000048757254,0.0000027374413],"category_scores_gemma":[0.0025119206,0.00008532897,0.000012442513,0.0002673224,0.00012260853,0.000028543713,0.000064555505,0.0000775162,0.0000030734207],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041667905,0.00009377209,0.042571425,0.0008189796,0.000005669077,7.612746e-7,0.0005162754,0.00008039912,0.8259006,0.0000066673274,0.00010478432,0.12948395],"study_design_scores_gemma":[0.0026654904,0.0045951,0.9513078,0.0014396209,0.000018252074,0.00003143117,0.0019621854,0.004438475,0.021201307,0.00009344617,0.011786387,0.00046052557],"about_ca_topic_score_codex":0.00038785723,"about_ca_topic_score_gemma":0.00044797672,"teacher_disagreement_score":0.90873635,"about_ca_system_score_codex":0.000015239409,"about_ca_system_score_gemma":0.00008596615,"threshold_uncertainty_score":0.34796143},"labels":[],"label_agreement":null},{"id":"W4388461368","doi":"10.1016/j.heliyon.2023.e22106","title":"Evaluation of Immulex S. pneumoniae Omni test for the direct detection of S. pneumoniae from positive blood cultures","year":2023,"lang":"en","type":"article","venue":"Heliyon","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Sidra Medicine","keywords":"Streptococcus pneumoniae; Blood culture; Microbiology; Pneumococcal infections; Bacteremia; Medicine; Antibiotics; Biology","score_opus":0.024676540422826923,"score_gpt":0.29831863560241334,"score_spread":0.27364209517958643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388461368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99788654,0.00087964506,0.00011951713,0.0001065515,0.00019517349,0.00041958262,0.00021866678,0.000018300756,0.00015601618],"genre_scores_gemma":[0.99905276,0.00031005216,0.00004862477,0.000016547461,0.00012567552,0.00006640305,0.00024973846,0.000012069024,0.00011811411],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991256,0.000114208444,0.00024021446,0.00022157043,0.00019709436,0.00010131357],"domain_scores_gemma":[0.9988258,0.00017346717,0.00016356798,0.00027021128,0.000547903,0.000019083018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007950451,0.000083369705,0.00010994552,0.000030685886,0.00008606165,0.00001597442,0.000112513095,0.00009072848,0.000010435081],"category_scores_gemma":[0.001577481,0.00006637228,0.00009284333,0.00013360337,0.00004812451,0.0000043205264,0.000040631505,0.000036313268,0.000004157979],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020118601,0.000054923526,0.0013167063,0.000032135362,0.000062898485,4.76654e-8,0.00014304352,0.000058000925,0.9914104,0.0000026715252,0.000023150396,0.0068759574],"study_design_scores_gemma":[0.0003418078,0.00014487446,0.12395683,0.0000394735,0.00018287632,6.447617e-7,0.00015123867,0.00080349756,0.87402356,0.000050126404,0.00023970623,0.00006539014],"about_ca_topic_score_codex":0.00008544215,"about_ca_topic_score_gemma":0.00019722249,"teacher_disagreement_score":0.12264012,"about_ca_system_score_codex":0.000010834939,"about_ca_system_score_gemma":0.00004509948,"threshold_uncertainty_score":0.2706583},"labels":[],"label_agreement":null},{"id":"W4388661269","doi":"10.1016/s2666-5247(23)00283-5","title":"Genomics for public health and international surveillance of antimicrobial resistance","year":2023,"lang":"en","type":"review","venue":"The Lancet Microbe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"University of Liverpool; Imperial College London; University of Warwick; National Institute for Health and Care Research; National Institute for Health Research Health Protection Research Unit; University of Cambridge; Public Health England; Rosetrees Trust; Department of Health and Social Care; Wellcome Trust","keywords":"Genomics; Public health; Corporate governance; Public health surveillance; Data sharing; Antibiotic resistance; Data science; Genome; Business; Medicine; Biology; Computer science; Genetics","score_opus":0.16848521864290822,"score_gpt":0.3703043004189795,"score_spread":0.20181908177607127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388661269","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010427936,0.9944335,0.0002515844,0.0016915805,0.0005470586,0.00067936897,0.0012777176,0.000021898557,0.00005449115],"genre_scores_gemma":[0.000086367756,0.99516356,0.0008102419,0.00024037012,0.00062312087,0.000026925938,0.0015127333,0.000033524855,0.0015031331],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.998908,0.00013457854,0.00041700035,0.00030344608,0.000035527835,0.00020145225],"domain_scores_gemma":[0.99896634,0.000068570014,0.0004195305,0.00041040615,0.000095989286,0.000039143077],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009068715,0.00014252879,0.0005842958,0.000034768156,0.00007718636,0.000058781934,0.0004307489,0.00010957682,0.000002393865],"category_scores_gemma":[0.00034819538,0.00011235428,0.00013311136,0.000078802266,0.00009049218,0.000002095142,0.0001942415,0.0000830607,0.0000036221863],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018304025,0.00014115045,0.00025204514,0.056596912,0.0010956639,6.915245e-7,0.00048398532,8.604795e-7,0.072192736,0.001242159,0.23367354,0.6341372],"study_design_scores_gemma":[0.000157144,0.000011551047,0.0000202236,0.00047834992,0.000010634747,0.000005467407,0.000009433078,8.0605207e-7,0.00005106633,0.000017522769,0.99913335,0.00010444031],"about_ca_topic_score_codex":0.0000064527694,"about_ca_topic_score_gemma":0.00014197346,"teacher_disagreement_score":0.76545984,"about_ca_system_score_codex":0.000028731793,"about_ca_system_score_gemma":0.0002902586,"threshold_uncertainty_score":0.45816746},"labels":[],"label_agreement":null},{"id":"W4388762247","doi":"10.1128/spectrum.02630-23","title":"The impact of the COVID-19 pandemic on blood culture practices and bloodstream infections","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ottawa Hospital; Public Health Ontario; Health Sciences Centre; University Health Network; University of Toronto; Institute for Clinical Evaluative Sciences; Sinai Health System; University of Waterloo; Sunnybrook Health Science Centre; University of Ottawa","funders":"Canadian Institutes of Health Research; Ontario Ministry of Health and Long-Term Care; Government of Canada; Institute for Clinical Evaluative Sciences","keywords":"Pandemic; Coronavirus disease 2019 (COVID-19); Bloodstream infection; Blood culture; 2019-20 coronavirus outbreak; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Virology; Medicine; Betacoronavirus; Immunology; Biology; Intensive care medicine; Microbiology; Internal medicine; Antibiotics; Outbreak; Infectious disease (medical specialty); Disease","score_opus":0.029561890639398628,"score_gpt":0.33168229595228743,"score_spread":0.3021204053128888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388762247","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975334,0.00013350965,0.00000315753,0.0017652953,0.00016065706,0.00016625151,0.00006781365,0.000029481616,0.00014042722],"genre_scores_gemma":[0.9981482,0.00034621687,0.0000063354696,0.00017291223,0.00009059717,0.0000093823055,0.000088435045,0.0000072822595,0.0011306227],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992078,0.00019596078,0.00015730021,0.0002435554,0.000020827123,0.0001745789],"domain_scores_gemma":[0.999227,0.000110992885,0.00023354945,0.0003565026,0.000027170687,0.000044770004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034359822,0.00010139936,0.00009019639,0.000024322022,0.00034323265,0.000029263303,0.00017797633,0.00013768702,0.000015373802],"category_scores_gemma":[0.0012696722,0.00005482282,0.00009598012,0.00015990502,0.00025615917,0.0000025431184,0.00011918993,0.00013112531,0.000009592087],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017504213,0.000044025834,0.1649498,0.0000043810173,0.000076242,2.535655e-7,0.000063527834,0.000013893066,0.83156335,0.000054286116,0.0031740388,0.000038683713],"study_design_scores_gemma":[0.0025804702,0.0025666843,0.40010363,0.000028096063,0.00025533003,0.0013011476,0.00084555754,0.000034349923,0.43873325,0.0016237127,0.1512902,0.00063755986],"about_ca_topic_score_codex":0.00022281465,"about_ca_topic_score_gemma":0.0012871935,"teacher_disagreement_score":0.3928301,"about_ca_system_score_codex":0.000015603906,"about_ca_system_score_gemma":0.00010571407,"threshold_uncertainty_score":0.26399028},"labels":[],"label_agreement":null},{"id":"W4389029297","doi":"10.1093/ofid/ofad500.919","title":"874. Rapid Prediction of Antibiotic Susceptibility in Blood Stream Infections Using Direct Sequencing from Blood Cultures Coupled with Neighbour-Typing Prediction Algorithms.","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Electricity Association; Ottawa Hospital","funders":"","keywords":"Metagenomics; Antibiotics; Blood culture; Medicine; Typing; Antibiotic resistance; Pathogen; Blood stream; Empiric therapy; Algorithm; Workflow; Microbiology; Computational biology; Biology; Internal medicine; Immunology; Genetics; Computer science; Gene","score_opus":0.02022262230578299,"score_gpt":0.27136735626156866,"score_spread":0.2511447339557857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389029297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99717766,0.00015718717,0.00021737345,0.000026688433,0.00025839123,0.0007973546,0.00081731565,0.000154757,0.00039327075],"genre_scores_gemma":[0.9977049,0.00018703681,0.0001728347,0.000022613753,0.00014152116,0.000038620416,0.0016433999,0.000037625832,0.00005142283],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998054,0.00019715744,0.0005228679,0.0007147308,0.00016768862,0.00034352267],"domain_scores_gemma":[0.9987655,0.00006222801,0.00027553097,0.0005315917,0.00024105229,0.00012409361],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031365178,0.00025129784,0.00032881604,0.0001690895,0.0003163069,0.00018750732,0.00021280577,0.00013047397,0.0000833548],"category_scores_gemma":[0.0004882394,0.00024410918,0.0001162841,0.0006591198,0.00013308862,0.00008102357,0.00022062566,0.00013208888,0.0000044968497],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005502518,0.00052701234,0.6583462,0.000043191776,0.00016546136,0.0000032196167,0.00008549016,0.0021285454,0.3383259,0.000009843874,0.000055366236,0.00025478346],"study_design_scores_gemma":[0.003526649,0.0010465161,0.91181976,0.0003702399,0.0006499904,0.00003665383,0.0014173645,0.012121027,0.06830274,0.00017168446,0.00006362013,0.00047375474],"about_ca_topic_score_codex":0.0048978203,"about_ca_topic_score_gemma":0.0032501766,"teacher_disagreement_score":0.27002314,"about_ca_system_score_codex":0.0000824359,"about_ca_system_score_gemma":0.0002727871,"threshold_uncertainty_score":0.99544835},"labels":[],"label_agreement":null},{"id":"W4389031614","doi":"10.1093/ofid/ofad500.790","title":"729. I Can CPO Clearing Now, the Iso is Gone","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; University of Alberta","funders":"","keywords":"Medicine; Protocol (science); Randomized controlled trial; Cochrane Library; Isolation (microbiology); Infection control; Clearing; Emergency medicine; Internal medicine; Intensive care medicine; Alternative medicine; Pathology; Bioinformatics","score_opus":0.017370026826665944,"score_gpt":0.28587791064807844,"score_spread":0.2685078838214125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389031614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98811454,0.00006753349,0.00002452801,0.00381681,0.00035782583,0.00038657556,0.00009679332,0.000091939946,0.00704343],"genre_scores_gemma":[0.99261814,0.000078082405,0.000007716934,0.0023400076,0.00011964259,0.00006676018,0.00024145629,0.0000236631,0.004504499],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99910295,0.00006618606,0.00016628386,0.00032593118,0.00008599286,0.00025266167],"domain_scores_gemma":[0.99925023,0.000023184099,0.00006793371,0.0004966785,0.000071605784,0.000090387504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001652948,0.00011484703,0.00010365028,0.000029397994,0.00042732508,0.00033457758,0.00037572696,0.00007966965,0.00019460457],"category_scores_gemma":[0.00023342497,0.000094694056,0.00008775551,0.0002097436,0.00006683818,0.000008272695,0.00053355005,0.00008203823,0.00026128453],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007653573,0.00020321808,0.51720726,0.000049996055,0.00015456173,0.000004970586,0.00023433747,0.00006502115,0.1873882,0.0008217719,0.28200698,0.011787156],"study_design_scores_gemma":[0.0013693932,0.00033879897,0.71687067,0.000059197595,0.00011048795,0.000023498334,0.0010955036,0.00038916463,0.028904736,0.0028260285,0.24727239,0.00074012903],"about_ca_topic_score_codex":0.00039112038,"about_ca_topic_score_gemma":0.0011915183,"teacher_disagreement_score":0.19966343,"about_ca_system_score_codex":0.000017586017,"about_ca_system_score_gemma":0.00007383966,"threshold_uncertainty_score":0.38615113},"labels":[],"label_agreement":null},{"id":"W4389032221","doi":"10.1093/ofid/ofad500.653","title":"584. Microbiological Outcomes of Culture-Negative Blood Specimens Using 16s rRNA Broad-Range PCR Sequencing: a Retrospective Study in a Canadian Province from 2018 to 2022","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"","keywords":"Sanger sequencing; 16S ribosomal RNA; Blood culture; Medicine; Fastidious organism; Polymerase chain reaction; DNA sequencing; Clinical microbiology; Gram-positive bacterial infections; Pathology; Internal medicine; Biology; Microbiology; Genetics; Gene; Bacteria","score_opus":0.02729932848547268,"score_gpt":0.29904832078328736,"score_spread":0.2717489922978147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389032221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965096,0.000033993056,0.0000048127076,0.000086083346,0.00016860694,0.0014423955,0.0009861776,0.000027307664,0.0007410153],"genre_scores_gemma":[0.9988256,0.000005894415,0.0000927541,0.00020709599,0.00004801472,0.00007788117,0.0002213757,0.000019741627,0.000501614],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983806,0.00017723192,0.00034510592,0.00060923933,0.000099684046,0.00038816174],"domain_scores_gemma":[0.9990794,0.000026439215,0.00013876017,0.00039676903,0.00013568843,0.00022295008],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022022914,0.00019869805,0.00034340203,0.00013186589,0.00018187941,0.000119553566,0.0003169328,0.00010276927,0.000118557444],"category_scores_gemma":[0.00089630025,0.00018295788,0.000093128554,0.00041060644,0.000070061455,0.00002079901,0.0003812771,0.00009560728,0.000023277926],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039703256,0.0002676154,0.8019759,0.0000050138647,0.00009602713,0.000014516182,0.0003215873,0.000024207122,0.19663624,0.00001911376,0.0005625517,0.000037503105],"study_design_scores_gemma":[0.0009942605,0.00062509393,0.9907544,0.000025744424,0.00006001847,0.00000306257,0.0015059365,0.000021108213,0.005187869,0.00027589404,0.00027947602,0.00026713035],"about_ca_topic_score_codex":0.26169997,"about_ca_topic_score_gemma":0.6401729,"teacher_disagreement_score":0.3784729,"about_ca_system_score_codex":0.00027849112,"about_ca_system_score_gemma":0.00047716772,"threshold_uncertainty_score":0.7460806},"labels":[],"label_agreement":null},{"id":"W4389208914","doi":"10.1016/j.clinmicnews.2023.11.001","title":"A Day in the Life of a Medical Microbiology Fellow: Four Perspectives","year":2023,"lang":"en","type":"article","venue":"Clinical Microbiology Newsletter","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Accreditation; Clinical microbiology; Medical education; Graduate medical education; Medicine; Diversity (politics); Medical laboratory; Medical microbiology; Microbiology; Pathology; Biology; Political science; Immunology","score_opus":0.05753903900302314,"score_gpt":0.3536884806285713,"score_spread":0.2961494416255481,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389208914","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9693588,0.00016813545,0.000074078496,0.029499374,0.00050455,0.00021863615,0.00003187347,0.000021019141,0.00012354464],"genre_scores_gemma":[0.98755485,0.00016030563,0.00009798329,0.010979858,0.0005789797,0.00002084631,0.00027114645,0.00001473751,0.00032128667],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970202,0.0012476167,0.00079255307,0.00056436536,0.00004714323,0.00032811274],"domain_scores_gemma":[0.99860305,0.00053123495,0.00016801199,0.0005458318,0.00007793882,0.00007395163],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033493268,0.0001524919,0.00033287914,0.00007616825,0.000051997464,0.000014652529,0.00073193,0.00061682734,0.00025629436],"category_scores_gemma":[0.0038827127,0.00010973963,0.00022048909,0.00023746619,0.000709019,0.0000029963435,0.00027172687,0.0003862079,0.0001750788],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005595193,0.00015203067,0.017957566,0.000010842132,0.000054723318,0.000010575633,0.00033571126,9.300962e-7,0.9198735,0.0000820552,0.060662657,0.0008034663],"study_design_scores_gemma":[0.005008357,0.0010600943,0.29879144,0.00009579712,0.00009046163,0.0003573278,0.0033947122,0.000083751285,0.014796567,0.00029124742,0.67513496,0.00089530007],"about_ca_topic_score_codex":0.000034857116,"about_ca_topic_score_gemma":0.00017291952,"teacher_disagreement_score":0.9050769,"about_ca_system_score_codex":0.0000062416425,"about_ca_system_score_gemma":0.00013888063,"threshold_uncertainty_score":0.47575372},"labels":[],"label_agreement":null},{"id":"W4389450303","doi":"10.1093/tropej/fmad043","title":"Evaluating blood culture collection practice in children hospitalized with acute illness at a tertiary hospital in Malawi","year":2023,"lang":"en","type":"article","venue":"Journal of Tropical Pediatrics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Wellcome Trust; Bill and Melinda Gates Foundation","keywords":"Medicine; Blood culture; Sepsis; Cohort; Cohort study; Pediatrics; Intensive care medicine; Emergency medicine; Internal medicine","score_opus":0.00891832390649429,"score_gpt":0.2948127487226136,"score_spread":0.2858944248161193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389450303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99880147,0.00013705391,0.000052927207,0.00056021113,0.0002021287,0.00021069396,0.000005260794,0.0000085787615,0.000021684702],"genre_scores_gemma":[0.99654007,0.0005396617,0.0022205785,0.00006508788,0.0004120188,0.000007966194,0.000034795532,0.000014265934,0.00016556516],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987214,0.00016889787,0.00045736303,0.00020853929,0.00025889472,0.0001848585],"domain_scores_gemma":[0.9991792,0.000044271335,0.00034372686,0.00013251507,0.00022992006,0.000070402064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038501873,0.00011130627,0.00017079285,0.00014077296,0.000063859145,0.000044314627,0.0001399468,0.00014505701,0.0000071222757],"category_scores_gemma":[0.0015614432,0.000090643865,0.00007203265,0.00053328695,0.000027104912,0.000026464464,0.00007691754,0.00023219618,0.000003472565],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028998387,0.0002583767,0.9645004,0.000012311313,0.000052550953,0.000060124738,0.0002926683,0.00011434748,0.03349038,0.0000025923505,0.0006510223,0.00027519607],"study_design_scores_gemma":[0.0023958518,0.00092342554,0.99435735,0.000015070321,0.00013433828,0.00022216984,0.0001220441,0.00007775906,0.0014597371,0.000022776054,0.000116005765,0.00015347033],"about_ca_topic_score_codex":0.000016737782,"about_ca_topic_score_gemma":0.000025354266,"teacher_disagreement_score":0.032030642,"about_ca_system_score_codex":0.0000570313,"about_ca_system_score_gemma":0.00011705897,"threshold_uncertainty_score":0.36963496},"labels":[],"label_agreement":null},{"id":"W4389454823","doi":"10.3138/jammi-2023-0009","title":"Finding significant pathogens in blood cultures in children: Should we set the timer to 36 hours?","year":2023,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Canadian Electricity Association; Children's Hospital of Eastern Ontario; Ottawa Hospital","funders":"","keywords":"Medicine; Discontinuation; Blood culture; Bacteremia; Hazard ratio; Internal medicine; Confidence interval; Pediatrics; Gastroenterology; Antibiotics; Biology; Microbiology","score_opus":0.0086890194010549,"score_gpt":0.250958321175068,"score_spread":0.2422693017740131,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389454823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902197,0.0001462142,0.0000022351298,0.009183518,0.00027101795,0.00010486921,0.00006253646,0.0000017145985,0.000008201003],"genre_scores_gemma":[0.99866503,0.00020180039,0.000002123095,0.0009397191,0.00009994088,0.0000027390047,0.00002300017,0.0000038554704,0.00006178024],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990259,0.00028940267,0.00031524108,0.000103760285,0.00013145845,0.00013426828],"domain_scores_gemma":[0.9994025,0.00009274643,0.000246689,0.00009446797,0.00007433287,0.0000892229],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010625637,0.00006655066,0.00013409473,0.000048296555,0.000060876442,0.00001031745,0.00018298764,0.00012018705,0.000017377983],"category_scores_gemma":[0.0025419237,0.000040800613,0.000056788354,0.0001875014,0.00003722847,0.0000033740591,0.000073220974,0.00019503679,4.226877e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025809077,0.00003753516,0.8367842,0.0000060438683,0.000059690225,0.0000031356685,0.000070234724,0.00006722367,0.15101404,0.000008430953,0.01172823,0.00019544648],"study_design_scores_gemma":[0.00054775615,0.000038289538,0.99332696,0.000052651583,0.00003589488,0.000020046273,0.00009051177,0.000008050666,0.0038560715,0.000037990216,0.0019220334,0.00006372403],"about_ca_topic_score_codex":0.004805072,"about_ca_topic_score_gemma":0.06668194,"teacher_disagreement_score":0.15654281,"about_ca_system_score_codex":0.00006639633,"about_ca_system_score_gemma":0.00045647117,"threshold_uncertainty_score":0.9503487},"labels":[],"label_agreement":null},{"id":"W4389924755","doi":"10.1017/ash.2023.506","title":"Patient predictors of pathogenic versus commensal Gram-positive bacilli organisms isolated from blood cultures","year":2023,"lang":"en","type":"article","venue":"Antimicrobial Stewardship & Healthcare Epidemiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Blood culture; Bacilli; Sepsis; Medicine; Immunosuppression; Internal medicine; Isolation (microbiology); Biology; Microbiology; Immunology; Antibiotics; Bacteria","score_opus":0.03626798605266092,"score_gpt":0.31241801134754854,"score_spread":0.27615002529488764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389924755","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99321455,0.00031324133,0.00015993028,0.0026466155,0.0019041463,0.0004579003,0.0011641105,0.000111177185,0.000028323977],"genre_scores_gemma":[0.9918107,0.00042353396,0.0007189591,0.0014041291,0.00038750557,0.00001769197,0.005155217,0.000043792304,0.000038471855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9958774,0.0014765194,0.0010705163,0.0008180968,0.00011289784,0.0006445954],"domain_scores_gemma":[0.99780965,0.00050732837,0.00050252816,0.000602808,0.0003579989,0.00021967334],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008727311,0.000310272,0.000645627,0.00008472621,0.0002211155,0.0000137058,0.00030031017,0.0005964768,0.000047340487],"category_scores_gemma":[0.0021586977,0.00030389114,0.00023787955,0.00032610554,0.00024444997,0.000008657786,0.00026481086,0.00028744483,0.000049526592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006499336,0.00016077916,0.059759196,0.000063885476,0.00026421997,0.000008121821,0.0006200146,0.00002868288,0.9309514,0.00010476798,0.0062585087,0.0011304492],"study_design_scores_gemma":[0.006032132,0.008128776,0.37563136,0.00031803997,0.00045153734,0.000063826934,0.0015855546,0.00023157812,0.5968047,0.000705702,0.008363255,0.0016835774],"about_ca_topic_score_codex":0.0023401398,"about_ca_topic_score_gemma":0.00068919733,"teacher_disagreement_score":0.3341468,"about_ca_system_score_codex":0.000039446055,"about_ca_system_score_gemma":0.0001773677,"threshold_uncertainty_score":0.99994135},"labels":[],"label_agreement":null},{"id":"W4390105566","doi":"10.55633/s3me/06.2023","title":"Models to predict bacteremia in the emergency department: a systematic review","year":2023,"lang":"es","type":"review","venue":"Emergencias","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Emergency department; Bacteremia; Humanities; Gynecology","score_opus":0.08966632775526169,"score_gpt":0.3453543209802052,"score_spread":0.2556879932249435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390105566","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013922369,0.9867766,0.00008975721,0.00035188018,0.001492791,0.008566666,0.00033149234,0.00005312998,0.00094548526],"genre_scores_gemma":[0.0020808033,0.99086404,0.000041819036,0.00046024192,0.0004687796,0.002387347,0.0014946858,0.00010355946,0.0020987254],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99319476,0.0016166985,0.0028617831,0.0011502607,0.00053104875,0.00064545806],"domain_scores_gemma":[0.99661916,0.000078661826,0.00077957765,0.0020616206,0.00025706357,0.00020394077],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0031667328,0.000723451,0.0018827714,0.0001684675,0.00017441626,0.00007734537,0.0015366081,0.00042256174,0.00037054732],"category_scores_gemma":[0.0019385506,0.000527095,0.00085071486,0.0013312496,0.00003032764,0.000014704965,0.0003680555,0.00036620072,0.0011982408],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000069378684,0.00015970276,0.00004840173,0.96691304,0.0003230677,0.0000130462,0.00031752526,0.000007566676,0.00029916488,0.00012158,0.029928051,0.0018619],"study_design_scores_gemma":[0.00026179332,0.0003282552,0.00039630866,0.7213599,0.0042622755,0.0000636188,0.00035045316,0.00009872124,0.000027007738,0.00019894696,0.2706559,0.001996778],"about_ca_topic_score_codex":0.00008331763,"about_ca_topic_score_gemma":0.00058347743,"teacher_disagreement_score":0.24555312,"about_ca_system_score_codex":0.00009474764,"about_ca_system_score_gemma":0.00027241974,"threshold_uncertainty_score":0.99971807},"labels":[],"label_agreement":null},{"id":"W4390990804","doi":"10.1016/b978-0-12-818619-0.00106-4","title":"Proteomic analysis of microbial infections","year":2024,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Proteomics; Proteome; Identification (biology); Computational biology; Computer science; Data science; Biology; Bioinformatics; Ecology","score_opus":0.01247775868921122,"score_gpt":0.2509273140189408,"score_spread":0.23844955532972958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390990804","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.039150942,0.00019914836,0.000011638771,0.000024357165,0.0003963023,0.0003825373,0.00021062992,0.000028216913,0.9595962],"genre_scores_gemma":[0.05096908,0.000028660264,0.00011586476,0.00003542917,0.00024368933,0.000018515413,0.00047307272,0.00003944721,0.94807625],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989852,0.000015831682,0.00039660165,0.00041280955,0.00008041546,0.00010917399],"domain_scores_gemma":[0.99914247,0.0000062983013,0.0001760442,0.0005025565,0.0001268187,0.000045807916],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015139289,0.00019389525,0.00032476836,0.00023416478,0.000042870797,0.00003641541,0.00013769395,0.00029680855,0.0001984884],"category_scores_gemma":[0.000030702187,0.0001988425,0.0004639809,0.000036121342,0.00009760359,9.2652226e-7,0.000114929295,0.00015536055,0.000055882934],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014779562,0.000019239882,0.00007525737,0.0001421927,0.0021092675,0.0000016141635,0.000057027613,0.0000049153605,0.8886447,0.0016552113,0.00019812069,0.10707765],"study_design_scores_gemma":[0.000119749355,0.00009939309,0.00026011487,0.00012845384,0.0025150785,0.000006145274,0.000002894966,0.000015450509,0.023429329,0.0011627835,0.9718827,0.0003779184],"about_ca_topic_score_codex":0.0000019152403,"about_ca_topic_score_gemma":0.00012179334,"teacher_disagreement_score":0.9716846,"about_ca_system_score_codex":0.00002154392,"about_ca_system_score_gemma":0.00009237853,"threshold_uncertainty_score":0.8108562},"labels":[],"label_agreement":null},{"id":"W4391154380","doi":"10.2460/ajvr.23.12.0294","title":"Current state and future directions for veterinary antimicrobial resistance research","year":2024,"lang":"en","type":"article","venue":"American Journal of Veterinary Research","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Antimicrobial stewardship; One Health; Antibiotic resistance; Medicine; Animal health; Veterinary medicine; Stewardship (theology); Resistance (ecology); Alternative medicine; Political science; Pathology; Biology; Antibiotics","score_opus":0.1131861772009358,"score_gpt":0.4481639639999481,"score_spread":0.33497778679901236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391154380","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990933,0.0063559855,0.00016367927,0.0015135454,0.000673163,0.00020975446,0.00004741679,0.0000075921585,0.00009588875],"genre_scores_gemma":[0.9894777,0.006626721,0.0016042308,0.000013704177,0.0014622478,0.00002216539,0.000014905177,0.000028589746,0.000749746],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.997947,0.0006811058,0.0003414516,0.00034125886,0.00030926956,0.00037995976],"domain_scores_gemma":[0.9984744,0.00022619561,0.00007458216,0.00024981803,0.00082324486,0.00015173297],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003275398,0.00010354914,0.00017423493,0.00032573967,0.0003071484,0.00022482895,0.0002535775,0.000035911737,0.00001209093],"category_scores_gemma":[0.00028313816,0.00009485756,0.00009590912,0.00048732825,0.00058407075,0.000021512304,0.00017429696,0.0004947493,0.0000057435004],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00096909306,0.00007079955,0.00008955914,0.000194252,0.00004131768,0.000034591947,0.000281734,3.7748197e-7,0.7686611,0.000029755141,0.007671398,0.22195604],"study_design_scores_gemma":[0.00021705657,0.0046650195,0.0035855402,0.000200808,0.0000066460075,0.00040430308,0.00037944806,0.000020827474,0.00395802,0.00015198711,0.98628604,0.00012429644],"about_ca_topic_score_codex":0.000009858584,"about_ca_topic_score_gemma":0.000008457766,"teacher_disagreement_score":0.9786146,"about_ca_system_score_codex":0.00005386114,"about_ca_system_score_gemma":0.00027948426,"threshold_uncertainty_score":0.38681793},"labels":[],"label_agreement":null},{"id":"W4391328060","doi":"10.2139/ssrn.4706370","title":"Bringing TB Genomics to the Clinic: A Comprehensive Pipeline to Predict Antimicrobial Susceptibility from Genomic Data, Validated and Accredited to ISO Standards","year":2024,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Accreditation; Genomics; Pipeline (software); Medicine; Genomic medicine; Family medicine; Computational biology; Biology; Genetics; Computer science; Medical education; Genome; Gene","score_opus":0.026555159765163778,"score_gpt":0.3118755212032846,"score_spread":0.28532036143812084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391328060","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9686927,0.0012263908,0.017869659,0.0051406045,0.0016954569,0.0010951689,0.0042055333,0.000051727522,0.000022753473],"genre_scores_gemma":[0.98936933,0.0012246864,0.001698985,0.001483215,0.0032716813,0.000016445643,0.002350066,0.00010039746,0.00048520017],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9953878,0.0003417461,0.00097092433,0.0015592993,0.00031487935,0.0014253366],"domain_scores_gemma":[0.9970687,0.00006617181,0.00027353122,0.0017387598,0.0005055948,0.00034725433],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0035892772,0.00046863416,0.0005195792,0.00016275687,0.00031446374,0.0007033781,0.0015213229,0.0003475828,0.00004440776],"category_scores_gemma":[0.00084107934,0.00041737562,0.00017333128,0.00020001693,0.00007080253,0.000009835706,0.005355128,0.002332893,0.00006445088],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008137163,0.00007385551,0.0008051746,0.000066657405,0.0005806065,0.0000045568613,0.00060357363,0.000799193,0.9609681,0.000022461205,0.02735114,0.007910982],"study_design_scores_gemma":[0.0072630006,0.0044854986,0.03572039,0.0020146768,0.0033574547,0.0012385866,0.0074667414,0.011573607,0.09594114,0.02346601,0.79955184,0.007921077],"about_ca_topic_score_codex":0.0005829158,"about_ca_topic_score_gemma":0.006231908,"teacher_disagreement_score":0.86502695,"about_ca_system_score_codex":0.00082503376,"about_ca_system_score_gemma":0.004008619,"threshold_uncertainty_score":0.99996877},"labels":[],"label_agreement":null},{"id":"W4391403292","doi":"10.2460/javma.23.12.0687","title":"A One Health perspective on the use of genotypic methods for antimicrobial resistance prediction","year":2024,"lang":"en","type":"article","venue":"Journal of the American Veterinary Medical Association","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Antimicrobial; Antibiotic resistance; Genotype; Biology; Metagenomics; Biotechnology; Drug resistance; Genetics; Microbiology; Bacteria; Gene","score_opus":0.07419088885710994,"score_gpt":0.3859682421947035,"score_spread":0.31177735333759354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391403292","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94867206,0.00017570116,0.014736517,0.035401918,0.0007479165,0.00020116328,0.000042340886,0.0000063809216,0.000016018172],"genre_scores_gemma":[0.98986983,0.00018652178,0.007828448,0.0012815142,0.0005270663,0.000005255219,0.0000055270707,0.000011088215,0.00028472353],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985036,0.00067319284,0.00036601906,0.00011659796,0.00024161536,0.00009894348],"domain_scores_gemma":[0.9984765,0.00040669343,0.0006691171,0.00014263408,0.00026480437,0.00004021734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00210729,0.00005760897,0.00016113919,0.000030322328,0.00008542478,0.000031150183,0.00016448069,0.000050170165,0.0000074716504],"category_scores_gemma":[0.0044460995,0.000037513862,0.00016286559,0.00014568541,0.00008240475,0.000008599476,0.000037767328,0.00017055623,4.700426e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007165426,0.00016685153,0.0003882045,0.00007603373,0.0002992772,6.8917933e-7,0.0004955554,0.000019817755,0.95331144,0.0004240173,0.021113247,0.022988338],"study_design_scores_gemma":[0.0024229633,0.01462558,0.39460325,0.0028984165,0.00048032939,0.00020039051,0.0019203589,0.0050133145,0.09362431,0.0021591596,0.4813742,0.00067772507],"about_ca_topic_score_codex":0.000026672102,"about_ca_topic_score_gemma":0.000009300369,"teacher_disagreement_score":0.8596871,"about_ca_system_score_codex":0.00022365143,"about_ca_system_score_gemma":0.0002452717,"threshold_uncertainty_score":0.53227174},"labels":[],"label_agreement":null},{"id":"W4391434576","doi":"10.1128/jcm.01518-23","title":"The microbiological outcomes of culture-negative blood specimens using 16S rRNA broad-range PCR sequencing: a retrospective study in a Canadian province from 2018 to 2022","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Cidara Therapeutics; AstraZeneca; Pfizer","keywords":"Fastidious organism; 16S ribosomal RNA; Blood culture; Biology; Ribosomal RNA; Polymerase chain reaction; Sepsis; Microbiology; Clinical microbiology; Bacteria; Genetics; Immunology; Antibiotics; Gene","score_opus":0.05603961764042869,"score_gpt":0.36226138736804586,"score_spread":0.30622176972761717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391434576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99721456,0.0005396403,0.000025046591,0.0004735659,0.0010831316,0.00040657877,0.00020252667,0.0000043835844,0.000050550007],"genre_scores_gemma":[0.9980138,0.00006139209,0.001001963,0.00025154583,0.00038801186,0.000003081169,0.000015477513,0.000013211977,0.0002515044],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9969624,0.00072002294,0.001491968,0.00044261638,0.000056102373,0.00032686302],"domain_scores_gemma":[0.99843216,0.00032919904,0.00046231796,0.0003014071,0.00029700864,0.0001778954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022009246,0.00018286795,0.00062562706,0.00010499023,0.00008724055,0.00005321663,0.0003991766,0.00029387465,0.00004483204],"category_scores_gemma":[0.0035272762,0.00011691409,0.0002802187,0.00019118383,0.0002455193,0.000009607223,0.00013898834,0.00052229664,0.0000071678705],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014674633,0.00016230396,0.26516053,0.0000042864513,0.00025903338,0.000032338125,0.00028710655,0.0000042518864,0.73324275,0.000013819703,0.00052104815,0.00016578387],"study_design_scores_gemma":[0.0025297354,0.005491587,0.9410389,0.00017073787,0.0002583044,0.00022564498,0.0018389293,0.000028280367,0.028282445,0.000433164,0.019222125,0.00048015054],"about_ca_topic_score_codex":0.010128906,"about_ca_topic_score_gemma":0.14611252,"teacher_disagreement_score":0.7049603,"about_ca_system_score_codex":0.00016838923,"about_ca_system_score_gemma":0.0009453837,"threshold_uncertainty_score":0.9964627},"labels":[],"label_agreement":null},{"id":"W4392365153","doi":"10.1016/j.isci.2024.109402","title":"Cultivation and sequencing-free protocol for Serratia marcescens detection and typing","year":2024,"lang":"en","type":"article","venue":"iScience","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Blood Services; University of Ottawa","funders":"Fondazione Romeo ed Enrica Invernizzi; Università degli Studi di Milano","keywords":"Serratia marcescens; Outbreak; Typing; Enterobacteriaceae Infections; Intensive care; Pathogen; Microbiology; Biology; Protocol (science); Serratia; Computational biology; Medicine; Genetics; Intensive care medicine; Virology; Enterobacteriaceae; Bacteria; Gene; Escherichia coli","score_opus":0.038295584662458845,"score_gpt":0.32135516813471326,"score_spread":0.2830595834722544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392365153","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95604396,0.000044340857,0.026178936,0.00034521305,0.00015265516,0.01695932,0.00000748947,0.00004337159,0.00022468866],"genre_scores_gemma":[0.9916976,0.0000014605067,0.0016103974,0.000043174958,0.00008063272,0.006253852,0.000003684606,0.0000045190563,0.00030464088],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995909,0.000012240446,0.00007447506,0.00022371579,0.000030176889,0.000068513706],"domain_scores_gemma":[0.99981207,0.000009698556,0.000017829121,0.00009748808,0.000039447346,0.000023484366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020843378,0.00004141757,0.00002791344,0.000018935556,0.00010310552,0.00012411134,0.00004637095,0.000032963642,0.000002304114],"category_scores_gemma":[0.00024260239,0.000037004862,0.0000093094,0.000058221485,0.000055064098,0.000012069111,0.00004152701,0.000022323344,5.8531674e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007338657,0.0000019113918,0.0002814589,0.00006525773,0.0000010558623,5.8545716e-8,0.00008633031,0.0000010821379,0.985877,0.00007017775,0.000082845676,0.013525512],"study_design_scores_gemma":[0.00055966753,0.00029771327,0.028890612,0.00014442076,0.000009333904,0.000041274776,0.0002747879,0.032147706,0.88946646,0.001599587,0.046283606,0.00028479865],"about_ca_topic_score_codex":0.000010977108,"about_ca_topic_score_gemma":0.000068944464,"teacher_disagreement_score":0.09641048,"about_ca_system_score_codex":0.000009568057,"about_ca_system_score_gemma":0.000031860764,"threshold_uncertainty_score":0.15090144},"labels":[],"label_agreement":null},{"id":"W4392586075","doi":"10.1128/jcm.01296-23","title":"Prospective observational pilot study of the T2Resistance panel in the T2Dx system for detection of resistance genes in bacterial bloodstream infections","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Sick Kids Foundation","keywords":"Interquartile range; Antibiotics; Sepsis; Microbiology; Ceftazidime; Antibiotic resistance; Antimicrobial; Prospective cohort study; Biology; Meropenem; Internal medicine; Medicine; Bacteria; Pseudomonas aeruginosa; Genetics","score_opus":0.10422675282306151,"score_gpt":0.3604791413066216,"score_spread":0.25625238848356013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392586075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99791586,0.00021862902,0.00012103968,0.00014487766,0.0011206523,0.00042847559,0.00003682399,0.0000020823497,0.000011584221],"genre_scores_gemma":[0.9994862,0.00002415964,0.00009857385,0.000015538692,0.0003096727,0.000019312723,0.0000068590543,0.0000059064732,0.00003376713],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978961,0.00057729444,0.0012170257,0.00017796303,0.000044251432,0.00008736447],"domain_scores_gemma":[0.9985279,0.00047211227,0.0005346334,0.00018837479,0.00026416112,0.000012817708],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018388887,0.000075417396,0.00027371233,0.00005073442,0.00003715195,0.000013977642,0.00022072268,0.000093580726,0.000001806119],"category_scores_gemma":[0.0012081292,0.00004728562,0.00012936893,0.0001875385,0.000106889056,0.000007662041,0.000033453423,0.00017629271,1.8470351e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060412806,0.0007075268,0.09714419,0.00007518066,0.000052345487,5.752127e-7,0.000111865644,0.000017941298,0.90097463,0.00006942735,0.000035350364,0.0002068613],"study_design_scores_gemma":[0.0019964082,0.0032265505,0.9253001,0.00019987713,0.00006855116,0.00003681353,0.0010785355,0.000014028041,0.06619337,0.0001429631,0.0016555359,0.00008724493],"about_ca_topic_score_codex":0.000030438487,"about_ca_topic_score_gemma":0.0035715587,"teacher_disagreement_score":0.8347812,"about_ca_system_score_codex":0.000025025149,"about_ca_system_score_gemma":0.00015096701,"threshold_uncertainty_score":0.19930136},"labels":[],"label_agreement":null},{"id":"W4393238293","doi":"10.1016/j.cmi.2024.03.025","title":"Follow-up blood cultures do not reduce mortality in hospitalized patients with Gram-negative bloodstream infection: a retrospective population-wide cohort study","year":2024,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ottawa Hospital; St Joseph's Health Centre; Toronto Public Health; Health Sciences Centre; Public Health Ontario; University of Toronto; Institute for Clinical Evaluative Sciences; Sinai Health System; Sunnybrook Health Science Centre","funders":"Canadian Institutes of Health Research; University of Toronto","keywords":"Medicine; Interquartile range; Retrospective cohort study; Confounding; Internal medicine; Cohort study; Population; Bacteremia; Mortality rate; Bloodstream infection; Cohort; Antibiotics","score_opus":0.01562441338964601,"score_gpt":0.3230921639893488,"score_spread":0.3074677505997028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393238293","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997791,0.00003525669,0.000024953588,0.00003492834,0.0010575538,0.0008867291,0.000041365714,0.000056693556,0.000071517774],"genre_scores_gemma":[0.99891037,0.00008691659,0.000044254626,0.00006747583,0.00017129436,0.000073213574,0.0005318298,0.000015464997,0.00009915648],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979762,0.00043376733,0.00056201685,0.0008073741,0.000045890123,0.00017478991],"domain_scores_gemma":[0.9992503,0.00008962881,0.00015076758,0.00026001487,0.00019017077,0.000059133723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071020273,0.00020054683,0.00032007197,0.00006780048,0.00013972432,0.000082151084,0.000052702162,0.00033082708,0.00001752353],"category_scores_gemma":[0.0011540647,0.00016499475,0.00010493137,0.0002177388,0.00017927392,0.000026725153,0.000066836576,0.00029612062,0.000009127489],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018634797,0.00071370276,0.98903316,0.000017754262,0.0003047154,0.0000013070802,0.00008205878,0.0000018714119,0.009261202,0.00002571835,0.000101605045,0.00027056923],"study_design_scores_gemma":[0.0019497437,0.0013484493,0.99466544,0.000038840477,0.00017555058,0.000006271636,0.000018067592,0.000003465463,0.0013327809,0.00011467377,0.0001435983,0.00020312934],"about_ca_topic_score_codex":0.0011999151,"about_ca_topic_score_gemma":0.002620388,"teacher_disagreement_score":0.007928422,"about_ca_system_score_codex":0.000033651275,"about_ca_system_score_gemma":0.00003966393,"threshold_uncertainty_score":0.67282903},"labels":[],"label_agreement":null},{"id":"W4393377214","doi":"10.1128/jcm.01445-23","title":"Automated detection of methicillin-resistant <i>Staphylococcus aureus</i> with the MRSA CHROM imaging application on BD Kiestra Total Lab Automation System","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Electricity Association","funders":"BD","keywords":"Chromogenic; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Microbiology; Micrococcaceae; Medicine; Laboratory automation; Tertiary care; Surgery; Antibacterial agent; Automation; Biology; Bacteria; Chromatography; Chemistry; Antibiotics","score_opus":0.014973921570832131,"score_gpt":0.30907479152726114,"score_spread":0.29410086995642903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393377214","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.989828,0.00035529598,0.0077057984,0.0011089037,0.00066629285,0.000198312,0.000031079733,0.000058168065,0.000048178514],"genre_scores_gemma":[0.99890435,0.000020963622,0.0004032056,0.00013689145,0.000449396,0.0000055559635,0.000039300427,0.00001577708,0.000024567047],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99799234,0.0004580427,0.0010681469,0.0002676699,0.00007564363,0.00013818714],"domain_scores_gemma":[0.9982221,0.00032961526,0.0007379464,0.00027802156,0.00038179147,0.000050488656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019412427,0.00013373911,0.000315186,0.00007029881,0.00007373423,0.000045253943,0.00019636616,0.00020930538,0.0000040603145],"category_scores_gemma":[0.000391259,0.00008370159,0.00019898168,0.00015402134,0.00019223132,0.000010619999,0.00003526542,0.0003238365,0.000007563076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030105788,0.000062338404,0.0001715304,0.000081455575,0.00011256629,0.0000029164155,0.00003686381,0.00013920854,0.9947898,0.000083859224,0.00046283452,0.0037556067],"study_design_scores_gemma":[0.0012978989,0.002005383,0.018008754,0.00042617766,0.00026799762,0.00016440138,0.0005427365,0.00834027,0.9473724,0.00003401458,0.02123179,0.00030818264],"about_ca_topic_score_codex":0.000013655028,"about_ca_topic_score_gemma":0.000029242987,"teacher_disagreement_score":0.047417365,"about_ca_system_score_codex":0.0000378537,"about_ca_system_score_gemma":0.00017570004,"threshold_uncertainty_score":0.34132516},"labels":[],"label_agreement":null},{"id":"W4394360707","doi":"10.6084/m9.figshare.20326650","title":"Bacterial Isolate Microscopy","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Microscopy; Medicine; Pathology","score_opus":0.02664954684339063,"score_gpt":0.2880543701394769,"score_spread":0.2614048232960863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394360707","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00025751494,0.00009725706,5.537687e-8,0.000016246711,0.00060802524,0.00020916588,0.9987379,0.000018713037,0.000055174325],"genre_scores_gemma":[0.000023836907,0.000015497728,0.000016847584,0.00022686298,0.00073486473,0.00018054686,0.99805903,0.000026676738,0.0007158268],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988101,0.00009290201,0.00024726905,0.00051878236,0.00011553214,0.0002153789],"domain_scores_gemma":[0.99887615,0.000014502285,0.00019074668,0.00077142526,0.00007349292,0.000073682946],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00006008927,0.00021772864,0.00017281176,0.00004147847,0.00015021182,0.00013001863,0.0005100322,0.00029159884,0.8896236],"category_scores_gemma":[0.00091959804,0.00024949262,0.00012641368,0.0000669956,0.0000068418153,0.0000024914193,0.0005588428,0.00022955622,0.0013334951],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026641277,0.00003053846,4.0930087e-7,0.00012637982,0.00001895822,0.0000032711332,0.0000020127036,3.5589048e-7,0.07234267,1.892206e-8,0.92737013,0.00007859856],"study_design_scores_gemma":[0.00011143161,0.00007206239,0.00004579466,0.00008286042,0.000011699951,0.000009212575,0.0000033943122,4.1855483e-7,0.0033149712,7.345481e-7,0.99607915,0.00026825655],"about_ca_topic_score_codex":0.000024317176,"about_ca_topic_score_gemma":0.00006135771,"teacher_disagreement_score":0.8882901,"about_ca_system_score_codex":0.00002486527,"about_ca_system_score_gemma":0.00016202954,"threshold_uncertainty_score":0.9999957},"labels":[],"label_agreement":null},{"id":"W4394783202","doi":"10.1101/2024.04.11.589091","title":"A Lipidomics-Based Method to Eliminate Negative Urine Culture in General Population","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Genome British Columbia; Island Health; University of Victoria","funders":"National Institutes of Health","keywords":"Urinalysis; Urine; Urinary system; Gold standard (test); Medicine; Population; Internal medicine; Intensive care medicine; Environmental health","score_opus":0.012969532409431017,"score_gpt":0.2714531906485317,"score_spread":0.2584836582391007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394783202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99241984,0.00024799042,0.004653278,0.00044813193,0.0010462865,0.00081298914,0.00024322172,0.00011992135,0.000008326285],"genre_scores_gemma":[0.92417294,0.000020498515,0.074250735,0.000402004,0.0008022556,0.00020475715,0.000012113918,0.00009138135,0.0000432904],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974211,0.00027381082,0.0005522827,0.0012143617,0.00018004901,0.00035842598],"domain_scores_gemma":[0.9983743,0.000020395624,0.00020563975,0.00087904994,0.0003321104,0.00018849675],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007967232,0.00042127367,0.00038943108,0.00024405964,0.000068748246,0.00023290415,0.0003543656,0.00057155505,0.000016130667],"category_scores_gemma":[0.00054547604,0.00045745596,0.00015739292,0.00040171857,0.00003055343,0.0000062830686,0.00055812404,0.00050606666,0.000037719637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000075200565,0.00007487528,0.0022902372,0.00023752154,0.000043051685,0.000007391215,0.000016141175,0.0014621816,0.99534506,0.0001396125,0.00029861837,0.000010117655],"study_design_scores_gemma":[0.0005428438,0.00009745854,0.10669293,0.00030515328,0.00007111631,1.9163107e-8,0.0000040094524,0.0042218193,0.88440377,0.000021767451,0.00285076,0.00078833546],"about_ca_topic_score_codex":0.0002674155,"about_ca_topic_score_gemma":0.000053711276,"teacher_disagreement_score":0.11094126,"about_ca_system_score_codex":0.0001918713,"about_ca_system_score_gemma":0.00029637944,"threshold_uncertainty_score":0.9997877},"labels":[],"label_agreement":null},{"id":"W4394785043","doi":"10.1101/2024.04.12.589250","title":"Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Resistome; Metagenomics; Antibiotic resistance; Workflow; Computational biology; Biodefense; Biology; Genome; Gene; Bioinformatics; Computer science; Genetics; Microbiology; Antibiotics; Mobile genetic elements; Database","score_opus":0.009066647312466867,"score_gpt":0.21713875847673136,"score_spread":0.2080721111642645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394785043","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934142,0.0012380203,0.003632891,0.00025828608,0.00040531694,0.00067050906,0.00031520566,0.000059946426,0.000005572587],"genre_scores_gemma":[0.9974756,0.00010866558,0.00168491,0.00013435929,0.00040763026,0.000052526088,0.0000030580275,0.00007916041,0.0000540562],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99831724,0.0001473567,0.00036131297,0.00081493496,0.00013593452,0.00022320473],"domain_scores_gemma":[0.9981944,0.00004449753,0.0003128355,0.00094684126,0.00041869242,0.000082752864],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005350301,0.00030661115,0.00029366647,0.00006131705,0.0001576918,0.00030112345,0.00048018227,0.0003059814,0.0000047424414],"category_scores_gemma":[0.00021129615,0.00025229584,0.00006904523,0.00018997527,0.00020015251,0.0000048291954,0.00074124726,0.00028928946,0.0000037156651],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018003941,0.00004741356,0.00034615526,0.00042956465,0.000058168076,0.0000073865695,0.0000058755786,0.00025249613,0.9984752,0.000011430369,0.00016897873,0.000017302993],"study_design_scores_gemma":[0.00031621745,0.000059562666,0.0014712878,0.00022787313,0.0001215601,6.944709e-8,0.0000052777764,0.0006211728,0.98330545,7.278426e-7,0.013516951,0.0003538404],"about_ca_topic_score_codex":0.00006693875,"about_ca_topic_score_gemma":0.00016843757,"teacher_disagreement_score":0.0151697295,"about_ca_system_score_codex":0.000032399363,"about_ca_system_score_gemma":0.00032456085,"threshold_uncertainty_score":0.9999929},"labels":[],"label_agreement":null},{"id":"W4396572221","doi":"10.21203/rs.3.rs-4271356/v1","title":"Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline","year":2024,"lang":"en","type":"preprint","venue":"Research Square","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Resistome; Metagenomics; Workflow; Antibiotic resistance; Computational biology; Biodefense; Biology; Genome; Gene; Bioinformatics; Computer science; Genetics; Microbiology; Antibiotics; Database; Mobile genetic elements","score_opus":0.02868778569260741,"score_gpt":0.33279254050825097,"score_spread":0.3041047548156436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396572221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942336,0.0016783014,0.0014756083,0.00079082814,0.00014315957,0.0011062099,0.00032944194,0.000021915144,0.0002209112],"genre_scores_gemma":[0.99648976,0.00020431515,0.0003668302,0.000032905857,0.00035074103,0.000062296844,0.00028559694,0.000041723517,0.0021658218],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981038,0.0004329177,0.00025998504,0.000672383,0.00027469682,0.00025624668],"domain_scores_gemma":[0.99826497,0.00014168129,0.00011418144,0.0007651839,0.0006434399,0.00007052896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001312959,0.00017560602,0.00020402564,0.000081205166,0.0002232897,0.0003304928,0.00051150646,0.00024198521,0.000011227364],"category_scores_gemma":[0.00048713313,0.00012805806,0.000063653955,0.00018439529,0.00031508668,0.0000022678146,0.0015737889,0.0005015986,0.000004623184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052330835,0.00005660836,0.00019346438,0.0011902656,0.00003719322,0.000009095611,0.00009726429,0.0006842034,0.9911651,0.000010263209,0.0009885896,0.0050446377],"study_design_scores_gemma":[0.000723171,0.00042611553,0.00072904304,0.0010340987,0.00007592657,0.000018612454,0.000564659,0.0040954677,0.9297456,0.00018482399,0.061912525,0.00048992864],"about_ca_topic_score_codex":0.00027234253,"about_ca_topic_score_gemma":0.0027553022,"teacher_disagreement_score":0.06141948,"about_ca_system_score_codex":0.000030916464,"about_ca_system_score_gemma":0.0003354332,"threshold_uncertainty_score":0.5222056},"labels":[],"label_agreement":null},{"id":"W4396654510","doi":"10.1016/j.diagmicrobio.2024.116336","title":"Evaluation of the utility and cost of secondary confirmatory testing for Neisseria gonorrhoeae identification from culture","year":2024,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Western University; Sunnybrook Health Science Centre; St. Michael's Hospital; Hamilton Regional Laboratory Medicine Program; Public Health Ontario; Kingston Health Sciences Centre; Health Sciences Centre; McMaster University Medical Centre; Trillium Health Centre; Sunnybrook Hospital; Queen's University; Brampton Civic Hospital; London Health Sciences Centre; McMaster University","funders":"","keywords":"Neisseria gonorrhoeae; Microbiology; Neisseria; Medicine; Mass spectrometry; Neisseriaceae; Identification (biology); Clinical microbiology; Biology; Chromatography; Bacteria; Chemistry; Antibiotics","score_opus":0.018522901631804613,"score_gpt":0.2749273677696044,"score_spread":0.2564044661377998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396654510","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937599,0.0042495183,0.0002523814,0.000035375197,0.0003459072,0.0005600188,0.00072015583,0.000010170412,0.00006660504],"genre_scores_gemma":[0.9992594,0.000056053654,0.000021741718,0.000046379533,0.000051235045,0.000060157836,0.00048394813,0.000006133402,0.000014915773],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992409,0.0001760545,0.00023428221,0.00025699375,0.000018870507,0.00007294266],"domain_scores_gemma":[0.99912375,0.00028540843,0.000104433944,0.00018249643,0.00026510315,0.00003882769],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053625985,0.00008143577,0.00009747987,0.000018968778,0.0000822532,0.00002232688,0.000053950764,0.00008965482,0.0000314999],"category_scores_gemma":[0.003980152,0.00006650875,0.000044527627,0.00004800065,0.00019288981,0.00000795888,0.000045137233,0.000050998606,6.6383797e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021902095,0.000044461158,0.07070696,0.00014654265,0.000050079583,3.6978296e-8,0.000100523896,0.0000049046257,0.9191649,0.000083655184,0.00044313347,0.009232911],"study_design_scores_gemma":[0.0007473801,0.00009467196,0.913826,0.00012603748,0.00053430896,0.000009882137,0.000115487324,0.0022010563,0.07686324,0.00210999,0.0032101,0.00016185298],"about_ca_topic_score_codex":0.000039768573,"about_ca_topic_score_gemma":0.000062479914,"teacher_disagreement_score":0.843119,"about_ca_system_score_codex":0.0000087768585,"about_ca_system_score_gemma":0.00016606846,"threshold_uncertainty_score":0.47649014},"labels":[],"label_agreement":null},{"id":"W4399274538","doi":"10.1101/2024.05.31.596829","title":"LC-SRM combined with machine learning enables fast identification and quantification of bacterial pathogens in urinary tract infections","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"","keywords":"Urinary system; Identification (biology); Computer science; Computational biology; Microbiology; Medicine; Machine learning; Biology; Internal medicine","score_opus":0.01161950073471257,"score_gpt":0.2244569950807923,"score_spread":0.21283749434607974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399274538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99738866,0.0005928109,0.0005667443,0.00009597684,0.0004972485,0.00053896074,0.00022895841,0.00008574061,0.0000048993397],"genre_scores_gemma":[0.99874616,0.00029525632,0.00053318724,0.00000855961,0.00016781293,0.000120187775,0.000037548365,0.00007189075,0.000019413093],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978908,0.00022006186,0.0006322935,0.0008743511,0.0001537025,0.0002288133],"domain_scores_gemma":[0.998439,0.000030609073,0.0004326376,0.00068438414,0.00032138778,0.00009193866],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00070464134,0.00031938287,0.00033847173,0.0002572344,0.0001108636,0.00021096284,0.0001891347,0.00037228738,0.000017336994],"category_scores_gemma":[0.00031785897,0.0003378331,0.00007648205,0.000311176,0.00012772605,0.00001672049,0.00028681228,0.00044673585,0.0000069537273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000101414014,0.00046663635,0.02712146,0.0004330019,0.000056389537,0.0000059915574,0.000023126595,0.00010149192,0.9715729,0.00009728784,0.000011655418,0.000008684727],"study_design_scores_gemma":[0.00066308,0.0005331444,0.41549397,0.00040690036,0.0001370858,3.5247788e-7,0.00002028558,0.0011779787,0.58011866,0.0000057013863,0.0008484119,0.0005944397],"about_ca_topic_score_codex":0.00008539223,"about_ca_topic_score_gemma":0.000052125375,"teacher_disagreement_score":0.39145422,"about_ca_system_score_codex":0.00005870011,"about_ca_system_score_gemma":0.0002561835,"threshold_uncertainty_score":0.9999074},"labels":[],"label_agreement":null},{"id":"W4399790294","doi":"10.1016/j.annemergmed.2024.05.005","title":"Validation of the Hospital for Sick Children Algorithm for Discriminating Bacteremia From Contaminants in Children With a Preliminary Positive Blood Culture","year":2024,"lang":"en","type":"article","venue":"Annals of Emergency Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; Université de Montréal; SickKids Foundation; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Medicine; Sick child; Bacteremia; Blood culture; Pediatrics; Emergency medicine; Intensive care medicine; Algorithm; Microbiology; Antibiotics","score_opus":0.02596222886977612,"score_gpt":0.31894888890772083,"score_spread":0.2929866600379447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399790294","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955217,0.00083529,0.0015268653,0.0004445648,0.00030405913,0.0008556769,0.0004845835,0.0000052947253,0.000021961403],"genre_scores_gemma":[0.99715,0.00012338308,0.0007057099,0.000019419078,0.00033939758,0.00004791189,0.0014397216,0.000015131356,0.00015935056],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990989,0.000038708782,0.00037203735,0.0002722844,0.00009597112,0.00012209639],"domain_scores_gemma":[0.9993404,0.000029123006,0.00016959931,0.0001892901,0.00024529218,0.00002626717],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022893611,0.000114898015,0.00016907704,0.000029891278,0.00003836727,0.0000036147242,0.0001437425,0.000075260534,0.00002001102],"category_scores_gemma":[0.000324317,0.00007435789,0.000091054375,0.000107186555,0.000059271766,0.000010748592,0.000034356497,0.000051434803,1.16554446e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014990816,0.00034203826,0.1615584,0.00013843829,0.00053710915,2.1178815e-7,0.0027278445,0.0000044492813,0.8155628,0.00006466564,0.0031674246,0.015746713],"study_design_scores_gemma":[0.0006833178,0.0016116847,0.6013843,0.00040519968,0.0001739353,0.0000018565863,0.00025908626,0.00014310506,0.3949995,0.00018346602,0.00003583782,0.00011873099],"about_ca_topic_score_codex":0.00022721654,"about_ca_topic_score_gemma":0.000027209331,"teacher_disagreement_score":0.43982586,"about_ca_system_score_codex":0.0000028353509,"about_ca_system_score_gemma":0.000031858766,"threshold_uncertainty_score":0.3032227},"labels":[],"label_agreement":null},{"id":"W4400087735","doi":"10.1128/msystems.00516-24","title":"Pangenome comparison of <i>Bacteroides fragilis</i> genomospecies unveils genetic diversity and ecological insights","year":2024,"lang":"en","type":"article","venue":"mSystems","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; University of California, San Diego; National Institutes of Health; National Institute of Diabetes and Digestive and Kidney Diseases; Chiba University; National Academies of Sciences, Engineering, and Medicine; Canadian Institute for Advanced Research; Howard Hughes Medical Institute; Hartwell Foundation; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Ford Foundation","keywords":"Bacteroides fragilis; Biology; Commensalism; Colonization; Microbiome; Microbiology; Gene; Bacteroides; Virulence; Ecological niche; Genetics; Bacteria; Ecology","score_opus":0.02895598072330664,"score_gpt":0.2600940081060709,"score_spread":0.2311380273827643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400087735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99512285,0.0037636224,0.00017433186,0.000029735334,0.00036082996,0.00015584519,0.000016973863,0.000028459548,0.0003473327],"genre_scores_gemma":[0.99918795,0.00008673876,0.00012494052,0.000020363872,0.000169495,0.000005816649,0.000033219047,0.000008079517,0.00036339439],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99914706,0.00008050337,0.000265305,0.00030438503,0.000086343236,0.00011640457],"domain_scores_gemma":[0.9995978,0.000029180354,0.00005911844,0.0002039405,0.000052050837,0.000057912013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012762968,0.00010126236,0.00018244096,0.000031384883,0.00016742761,0.000055908182,0.00012398016,0.00011216127,0.00002726803],"category_scores_gemma":[0.000047328092,0.00008825437,0.000053406722,0.00007091962,0.00009509371,0.0000044168896,0.00033838509,0.000054720484,0.000009331964],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009414508,0.00005047235,0.17885177,0.00017049132,0.00003931226,0.0000026171106,0.00093447923,0.000005310811,0.81874615,0.00012755477,0.000272372,0.0007900483],"study_design_scores_gemma":[0.00035436676,0.00056393986,0.8266602,0.0000937716,0.00007138828,0.000026659518,0.0011508233,0.00080967275,0.09532967,0.00014381566,0.07437863,0.00041702043],"about_ca_topic_score_codex":0.00006147563,"about_ca_topic_score_gemma":0.000068335394,"teacher_disagreement_score":0.7234165,"about_ca_system_score_codex":0.000014875458,"about_ca_system_score_gemma":0.000017694561,"threshold_uncertainty_score":0.35989088},"labels":[],"label_agreement":null},{"id":"W4400290307","doi":"10.1093/jac/dkae211","title":"Epidemiology and clinical relevance of persistent bacteraemia in patients with Gram-negative bloodstream infection: a retrospective cohort study","year":2024,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ottawa Hospital; Health Sciences Centre; Public Health Ontario; University of Toronto; Institute for Clinical Evaluative Sciences; Sinai Health System; Sunnybrook Health Science Centre","funders":"Ministry of Long-Term Care; Canadian Institutes of Health Research; International Council for the Exploration of the Sea; Ministry of Health, Ontario","keywords":"Epidemiology; Bloodstream infection; Medicine; Retrospective cohort study; Cohort; Gram; Bacteremia; Cohort study; Intensive care medicine; Clinical epidemiology; Internal medicine; Microbiology; Antibiotics; Biology; Bacteria","score_opus":0.013316503646336625,"score_gpt":0.29825766785447155,"score_spread":0.2849411642081349,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400290307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99910736,0.000071305534,0.000050971197,0.00018913297,0.000257496,0.0002903083,0.000007720541,0.000004195833,0.000021511374],"genre_scores_gemma":[0.9986609,0.00030600696,0.0007331041,0.00010308477,0.0001406311,0.0000012564459,0.000007632832,0.000014040152,0.00003333866],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986073,0.00022839288,0.00069134834,0.00027328896,0.00008163733,0.00011806976],"domain_scores_gemma":[0.9990643,0.000093060284,0.0003518888,0.00014630413,0.00029540976,0.00004900115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010472455,0.00011997457,0.0004081782,0.00007669514,0.000026901416,0.000016182954,0.000074900294,0.00010730102,0.000011543805],"category_scores_gemma":[0.00045442628,0.00009411107,0.00016914135,0.0001309763,0.0001417267,0.000015134231,0.00002220384,0.00022038307,4.133654e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062104064,0.0005932141,0.98301375,0.000021347749,0.000374408,0.000002089177,0.00015831948,0.0000075529324,0.014129753,0.000002561442,0.00016542849,0.00091056275],"study_design_scores_gemma":[0.0018844194,0.0021752627,0.99238634,0.00010101126,0.000061779174,0.000017199556,0.000031670916,0.000014417915,0.0030894694,0.000012372776,0.0001333743,0.00009270618],"about_ca_topic_score_codex":0.00005464328,"about_ca_topic_score_gemma":0.00007361198,"teacher_disagreement_score":0.011040283,"about_ca_system_score_codex":0.00004081862,"about_ca_system_score_gemma":0.00008199652,"threshold_uncertainty_score":0.38377383},"labels":[],"label_agreement":null},{"id":"W4401107522","doi":"10.1139/cjm-2024-0049","title":"Identification of key drivers of antimicrobial resistance in <i>Enterococcus</i> using machine learning","year":2024,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Dalhousie University","funders":"Beef Cattle Research Council; Agriculture and Agri-Food Canada; Government of Canada","keywords":"Enterococcus; Antimicrobial; Microbiology; Identification (biology); Key (lock); Antibiotic resistance; Biology; Antibiotics; Botany; Ecology","score_opus":0.010595674214108572,"score_gpt":0.23313557628909418,"score_spread":0.2225399020749856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401107522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977218,0.0012254186,0.00037569218,0.0001033574,0.0004181835,0.00005380266,0.0000763931,0.0000013653531,0.000023979494],"genre_scores_gemma":[0.99924237,0.00004812709,0.00045691023,0.000023953871,0.000050927072,2.167771e-7,0.00004848031,0.000009092069,0.00011994081],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990203,0.00012024215,0.0005642052,0.00014017292,0.00002059059,0.00013453813],"domain_scores_gemma":[0.9993742,0.000015485033,0.00027853486,0.00010726491,0.00016340353,0.00006107766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004438413,0.000072422044,0.00017192923,0.00023040638,0.000029136796,0.000015981326,0.00016057875,0.0001044522,0.000020990701],"category_scores_gemma":[0.0001757371,0.000076113414,0.00008283484,0.00013550084,0.00013359443,0.0000082159,0.000014429309,0.00013140027,0.000001110502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025057547,0.000008406223,0.014732105,0.00007315514,0.000025276784,0.000007724261,0.0002918869,0.00008907216,0.98441136,0.000030119973,0.00023296836,0.00007285161],"study_design_scores_gemma":[0.00035498172,0.00007128472,0.0027021829,0.0002524674,0.00002679645,0.00012075748,0.00009883004,0.00007765378,0.98358184,0.000031229287,0.012570176,0.00011178492],"about_ca_topic_score_codex":0.0006617963,"about_ca_topic_score_gemma":0.020897435,"teacher_disagreement_score":0.020235639,"about_ca_system_score_codex":0.000047471134,"about_ca_system_score_gemma":0.00044270523,"threshold_uncertainty_score":0.9969686},"labels":[],"label_agreement":null},{"id":"W4401286265","doi":"10.1021/acs.analchem.4c00741","title":"Machine Learning Assisted MALDI Mass Spectrometry for Rapid Antimicrobial Resistance Prediction in Clinicals","year":2024,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Key Research and Development Program of China; Beijing Institute of Technology; Natural Science Foundation of Beijing Municipality; Sun Yat-sen University; Southeast University; National Natural Science Foundation of China","keywords":"Chemistry; Antimicrobial; Antibiotic resistance; Mass spectrometry; Vancomycin; Chromatography; Bacteria; Antibiotics; Staphylococcus aureus; Biochemistry; Organic chemistry","score_opus":0.023303846541635094,"score_gpt":0.300429600133846,"score_spread":0.2771257535922109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401286265","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98110706,0.00092744885,0.007911451,0.0013073753,0.0003189919,0.00027399143,0.0001948623,0.00013524169,0.007823608],"genre_scores_gemma":[0.9829738,0.00007926086,0.0021435164,0.00007225244,0.00048071996,0.000015390175,0.00078269746,0.00002560593,0.013426734],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860644,0.000046264016,0.000443759,0.0005600592,0.00009609157,0.0002473949],"domain_scores_gemma":[0.9994485,0.00009751661,0.00005264429,0.00025208294,0.0000655856,0.00008367402],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000568211,0.00014085356,0.00018636923,0.000037659003,0.00005847425,0.00010361803,0.00013920492,0.00023369551,0.00022642172],"category_scores_gemma":[0.0011138249,0.00014726295,0.00016357197,0.00022657585,0.00007280391,0.000007114727,0.000041847008,0.0002534548,0.000013358394],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011464501,0.0000572281,0.0038541788,0.0002826538,0.00004316132,0.0000057024467,0.000005136874,0.000008467231,0.9929212,0.000053893433,0.0022028538,0.00045091228],"study_design_scores_gemma":[0.0017981947,0.00019295259,0.0155346515,0.0004049349,0.00017551966,0.000035577516,0.000066732144,0.027935605,0.80838406,0.00051497284,0.14417557,0.00078123796],"about_ca_topic_score_codex":0.0000040463124,"about_ca_topic_score_gemma":0.00000982517,"teacher_disagreement_score":0.18453711,"about_ca_system_score_codex":0.00004511398,"about_ca_system_score_gemma":0.00007173345,"threshold_uncertainty_score":0.6005209},"labels":[],"label_agreement":null},{"id":"W4401397616","doi":"10.1080/17460913.2024.2383503","title":"Emerging pathogens <i>Aerococcus urinae</i> and <i>Aerococcus sanguinicola</i> from a Canadian tertiary care hospital","year":2024,"lang":"en","type":"article","venue":"Future Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saskatchewan Health Authority; Saskatchewan Health; University of Saskatchewan","funders":"","keywords":"Tertiary care; Microbiology; Medicine; Biology; Family medicine","score_opus":0.00256092531785797,"score_gpt":0.20721586877724468,"score_spread":0.2046549434593867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401397616","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97986144,0.014783444,0.000041202537,0.0012808575,0.002435535,0.0002946728,0.0010038284,0.000066882785,0.00023215714],"genre_scores_gemma":[0.9934584,0.00018938286,0.00054371683,0.001022236,0.0017988629,0.000030641582,0.002737983,0.00003852431,0.00018026854],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984622,0.00009611201,0.00026342244,0.000752261,0.000028729102,0.0003972497],"domain_scores_gemma":[0.9992883,0.000019206189,0.00004479306,0.00037546796,0.00008371322,0.00018847348],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009737866,0.0002442772,0.00018627541,0.0000739891,0.00016844939,0.00010915014,0.00020299127,0.00037731454,0.0000959092],"category_scores_gemma":[0.000043216456,0.00023606046,0.00010495145,0.00009495851,0.00009430026,0.000007753758,0.00012542961,0.0001959425,0.00005342605],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000075179137,0.000012847424,0.011009677,0.00003829533,0.00005434709,0.000029417106,0.0009570816,3.6979318e-7,0.9701486,0.000027408121,0.010488459,0.0072259526],"study_design_scores_gemma":[0.00033756866,0.000109284156,0.018833138,0.00004838995,0.00005786495,0.0000768404,0.001422564,0.0000059804224,0.053387895,0.00003154359,0.9251961,0.0004928362],"about_ca_topic_score_codex":0.004021574,"about_ca_topic_score_gemma":0.036455445,"teacher_disagreement_score":0.91676074,"about_ca_system_score_codex":0.00004960084,"about_ca_system_score_gemma":0.00019822054,"threshold_uncertainty_score":0.9811267},"labels":[],"label_agreement":null},{"id":"W4401493945","doi":"10.51966/jvas.2024.55.1.184-190","title":"Retrospective analysis of antibacterial susceptibility of Staphylococcus spp. isolated from clinical samples of dogs in Ontario, Canada","year":2024,"lang":"en","type":"article","venue":"Journal of Veterinary and Animal Sciences","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Staphylococcus; Staphylococcus aureus; Microbiology; Medicine; Veterinary medicine; Biology; Bacteria; Genetics","score_opus":0.0514569327124437,"score_gpt":0.3274534311599003,"score_spread":0.27599649844745655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401493945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999415,0.00017745545,0.000020593905,0.000028055932,0.00021076218,0.000038045815,0.00008605786,8.501642e-7,0.000023212653],"genre_scores_gemma":[0.9994923,0.000053710315,0.000382421,0.0000052700993,0.000050070943,1.5022859e-7,0.000009160272,0.0000019078373,0.000005020016],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986485,0.0001298986,0.0007638575,0.00021396673,0.00015583722,0.0000878939],"domain_scores_gemma":[0.99928766,0.00007088664,0.00036348467,0.000094655465,0.00013819056,0.00004510785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010031164,0.0000719771,0.0003639502,0.000100690675,0.00002546835,0.000021346128,0.00015426763,0.0000594854,0.000101577825],"category_scores_gemma":[0.00018736688,0.000057695474,0.00013116807,0.00031441954,0.0002952836,0.0000207215,0.00006172561,0.00009577407,2.5893952e-8],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023913781,0.000044213804,0.47306737,0.000011368195,0.000081253565,0.000003728942,0.00007171842,0.0000042229603,0.52630854,0.0000062728654,0.000008457011,0.0001537435],"study_design_scores_gemma":[0.00015403339,0.0022637416,0.98806,0.00005478143,0.00007840122,0.0000041214316,0.00017657487,0.000116716335,0.008912305,0.000033666238,0.00009015456,0.000055514076],"about_ca_topic_score_codex":0.3943943,"about_ca_topic_score_gemma":0.7022806,"teacher_disagreement_score":0.5173962,"about_ca_system_score_codex":0.000027510741,"about_ca_system_score_gemma":0.00053216127,"threshold_uncertainty_score":0.60963845},"labels":[],"label_agreement":null},{"id":"W4401714920","doi":"10.1128/spectrum.00974-24","title":"Performance of common primary and chromogenic culture media for MALDI-TOF MS identification of clinically relevant yeasts","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Centre Hospitalier Universitaire de Sherbrooke; Université de Sherbrooke","funders":"Centers for Disease Control and Prevention; Georgetown University","keywords":"Chromogenic; Identification (biology); Antifungal; Microbiology; Medicine; Computational biology; Biology; Chemistry; Chromatography; Ecology","score_opus":0.009427976469138961,"score_gpt":0.2554501125281537,"score_spread":0.24602213605901474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401714920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977564,0.0010348387,0.00017661082,0.00019419703,0.00034766181,0.00021802715,0.00020615451,0.000014309448,0.000051768806],"genre_scores_gemma":[0.99753046,0.0003694803,0.00056756113,0.00004113664,0.000120318175,0.000010299616,0.0010365605,0.0000126689,0.000311528],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989097,0.000050296647,0.0005615218,0.00032197146,0.000025248937,0.00013125861],"domain_scores_gemma":[0.99944156,0.000043712753,0.00017218485,0.00025249537,0.00006304971,0.000026984702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045598976,0.00009942999,0.00019894357,0.000039435097,0.00003387645,0.000012074332,0.00013625043,0.0001867298,0.000013238355],"category_scores_gemma":[0.00011357599,0.00008945947,0.000083771825,0.000063513806,0.00020116093,0.00000530821,0.00006927309,0.00007357493,0.000005186006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099219775,0.00004423652,0.0048324675,0.00025296622,0.00004301,2.2149098e-7,0.000103418344,9.674347e-7,0.99310935,0.00008464577,0.00045243118,0.0009770937],"study_design_scores_gemma":[0.00036463366,0.000490464,0.03851656,0.00006727086,0.000054619242,0.00005807516,0.000028371025,0.00018174828,0.9542645,0.00011431233,0.005707627,0.00015177752],"about_ca_topic_score_codex":0.000004642307,"about_ca_topic_score_gemma":0.000030492562,"teacher_disagreement_score":0.03884478,"about_ca_system_score_codex":0.000011297781,"about_ca_system_score_gemma":0.000056024783,"threshold_uncertainty_score":0.36480513},"labels":[],"label_agreement":null},{"id":"W4401833773","doi":"10.1016/j.mcpro.2024.100832","title":"LC-SRM Combined With Machine Learning Enables Fast Identification and Quantification of Bacterial Pathogens in Urinary Tract Infections","year":2024,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; Université Laval","funders":"Génome Québec","keywords":"Gold standard (test); Urine; Urinary system; Microbiological culture; Medicine; Microbiology; Bacteria; Chromatography; Computational biology; Biology; Chemistry; Internal medicine","score_opus":0.008816396566081288,"score_gpt":0.22414356439205718,"score_spread":0.21532716782597588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401833773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97389543,0.00055091636,0.024635667,0.000101106605,0.0001312929,0.0005714094,0.000030903368,0.000038943217,0.000044348177],"genre_scores_gemma":[0.99734277,0.00009654281,0.0011756193,0.000008414995,0.00004711927,0.000071043745,0.0010464311,0.00004028766,0.00017180534],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860084,0.00019561342,0.0004174172,0.0004945361,0.00011869062,0.00017289828],"domain_scores_gemma":[0.99935925,0.00001663912,0.00014023409,0.00032862657,0.00010148004,0.000053787146],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005019336,0.00017571494,0.00017460666,0.00014824225,0.00008824797,0.00013761922,0.00010752487,0.0001480038,0.000017139175],"category_scores_gemma":[0.00013928776,0.0001787811,0.00006403413,0.0002424015,0.0000934028,0.000020920113,0.00006143754,0.0001774009,0.0000044603776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010190324,0.00031086535,0.003880567,0.0001398875,0.000028922781,0.000015777061,0.00014542419,0.000258497,0.994054,0.00022269813,0.000003449892,0.0008379615],"study_design_scores_gemma":[0.0004172889,0.000588705,0.0057526208,0.00006871821,0.000037922746,0.00004380546,0.00007574607,0.004200918,0.9878513,0.000073665506,0.00067902886,0.00021023395],"about_ca_topic_score_codex":0.00005302159,"about_ca_topic_score_gemma":0.000050418283,"teacher_disagreement_score":0.02346005,"about_ca_system_score_codex":0.000026074815,"about_ca_system_score_gemma":0.000082510574,"threshold_uncertainty_score":0.7290482},"labels":[],"label_agreement":null},{"id":"W4402538205","doi":"10.1016/j.diagmicrobio.2024.116538","title":"Detection of mecA-mediated methicillin resistance and evaluation of disk-diffusion antimicrobial susceptibility characteristics of Staphylococcus saprophyticus isolates from geographically diverse locations","year":2024,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Staphylococcus saprophyticus; Microbiology; Antimicrobial; Antibiotic resistance; Biology; Micrococcaceae; Staphylococcus; Staphylococcus aureus; Antibacterial agent; Bacteria; Antibiotics; Genetics","score_opus":0.009146736140883672,"score_gpt":0.2453773617052755,"score_spread":0.2362306255643918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402538205","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99574083,0.0018200651,0.0006650054,0.000041859144,0.00020677096,0.00040343052,0.001098949,0.00001644166,0.000006647233],"genre_scores_gemma":[0.99812144,0.0008077034,0.00005348914,0.000021774511,0.000046574816,0.00001786085,0.0009170385,0.000009930675,0.000004192032],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99863255,0.00032360991,0.00046618318,0.0004042004,0.000057871413,0.00011558224],"domain_scores_gemma":[0.99854136,0.00045191206,0.00021593706,0.00025138535,0.0004663995,0.00007303991],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00052954373,0.00014173261,0.00023760882,0.000101894424,0.00007875289,0.00001616904,0.0000623898,0.00018174843,0.000027052492],"category_scores_gemma":[0.0029071895,0.0001362433,0.000078318786,0.00014756284,0.0004763305,0.000012283149,0.00007444309,0.00009734423,9.112191e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014797554,0.00017811022,0.0968249,0.00026777366,0.00007657138,4.6881527e-7,0.000111194044,0.000004720488,0.9005218,0.000038862014,0.000017449123,0.0018101842],"study_design_scores_gemma":[0.00088838907,0.0002561443,0.7693439,0.00025284704,0.0005934893,0.0000017735191,0.0000747257,0.0006277385,0.22684523,0.00073412934,0.0001461723,0.00023545597],"about_ca_topic_score_codex":0.00016906451,"about_ca_topic_score_gemma":0.0005075242,"teacher_disagreement_score":0.67367655,"about_ca_system_score_codex":0.000014196347,"about_ca_system_score_gemma":0.00011740532,"threshold_uncertainty_score":0.5555841},"labels":[],"label_agreement":null},{"id":"W4402786674","doi":"10.1101/2024.09.23.614435","title":"Identifying ancient antibiotic resistance genes in archaeological dental calculus","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Calculus (dental); Resistance (ecology); Archaeology; Antibiotic resistance; Antibiotics; Geography; Biology; Genetics; Dentistry; Medicine; Ecology","score_opus":0.020766336491189606,"score_gpt":0.25488688594775016,"score_spread":0.23412054945656055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402786674","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99083,0.006021226,0.0004678336,0.00013027934,0.0017846194,0.00048983836,0.00012250929,0.00013422158,0.000019439298],"genre_scores_gemma":[0.9960529,0.00031513808,0.0028306544,0.000118366435,0.0004924407,0.000056825455,0.0000036627277,0.00008074406,0.00004923847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968604,0.00019906722,0.00064594345,0.0014749228,0.00027550233,0.0005441722],"domain_scores_gemma":[0.9982907,0.000020078847,0.00021570305,0.0010794005,0.00020642499,0.00018764718],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008013181,0.00043628964,0.0004034332,0.0002110552,0.00010697627,0.00026620267,0.0005534496,0.00059572,0.000021093485],"category_scores_gemma":[0.00038187605,0.0004735662,0.00019296892,0.00035707175,0.00021566106,0.000007615717,0.0015025482,0.0006098129,0.00007533765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031990487,0.0000989792,0.018804992,0.00049589144,0.000044930035,0.0000952319,0.000010414711,0.000018507586,0.97993076,0.0003115699,0.00015363327,0.000003106561],"study_design_scores_gemma":[0.00036372108,0.000040037397,0.24868117,0.0006670756,0.00006038932,1.3264001e-7,0.000013910772,0.00023433866,0.7467387,0.000012552861,0.0023452204,0.0008427985],"about_ca_topic_score_codex":0.000058050402,"about_ca_topic_score_gemma":0.00015503845,"teacher_disagreement_score":0.23319212,"about_ca_system_score_codex":0.00018183123,"about_ca_system_score_gemma":0.0003586606,"threshold_uncertainty_score":0.9997716},"labels":[],"label_agreement":null},{"id":"W4402828976","doi":"10.1016/j.jinf.2024.106283","title":"Long-term morbidity and mortality of patients who survived past 30 days from bloodstream infection: A population-based retrospective cohort study","year":2024,"lang":"en","type":"article","venue":"Journal of Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Ontario; Institute for Clinical Evaluative Sciences; Queen's University","funders":"Faculty of Health Sciences, Queen's University; Queen's University","keywords":"Medicine; Retrospective cohort study; Bloodstream infection; Cohort; Term (time); Population; Cohort study; Pediatrics; Intensive care medicine; Surgery; Internal medicine; Environmental health","score_opus":0.015383150373876529,"score_gpt":0.28796214059347597,"score_spread":0.2725789902195994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402828976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99816746,0.000031863656,0.0006762777,0.0000079455795,0.0008024331,0.00024195669,0.00003485236,0.000011478264,0.000025727219],"genre_scores_gemma":[0.99940795,0.000035779998,0.000020985222,0.000006208547,0.0003677254,0.0000045122047,0.00013748206,0.000010225129,0.000009152521],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99888587,0.00017012031,0.0004611223,0.00022095915,0.00018907664,0.000072857154],"domain_scores_gemma":[0.99898654,0.000027695643,0.0003339583,0.0001691531,0.00043077877,0.000051861873],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049020036,0.000108063476,0.00021478387,0.000084048384,0.000066550296,0.00007054052,0.000035433342,0.000091759175,0.00005369895],"category_scores_gemma":[0.00025996508,0.000100326964,0.00010068489,0.00012379054,0.000029796189,0.000025594749,0.00002619926,0.00012789806,9.0699814e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003698263,0.0003864832,0.9871994,0.000032807115,0.00018617387,0.0000013992953,0.000043945573,0.000025564987,0.011595427,0.000001399564,0.00003192536,0.00045844575],"study_design_scores_gemma":[0.00047131092,0.00048009472,0.99467784,0.000050768973,0.00014105883,0.0000022152276,0.0000055927203,0.000075300435,0.003972688,0.000028917657,0.000009042431,0.000085170774],"about_ca_topic_score_codex":0.0020495877,"about_ca_topic_score_gemma":0.0012112549,"teacher_disagreement_score":0.007622739,"about_ca_system_score_codex":0.00006815031,"about_ca_system_score_gemma":0.000049763337,"threshold_uncertainty_score":0.40912148},"labels":[],"label_agreement":null},{"id":"W4403154356","doi":"10.1016/j.cmi.2024.09.029","title":"ESR and CRP: it is time to stop the zombie tests: author's response","year":2024,"lang":"en","type":"letter","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Zombie; Medicine; Computer science; World Wide Web","score_opus":0.03896637583005629,"score_gpt":0.34969210651855037,"score_spread":0.3107257306884941,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403154356","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.447811,0.00026841697,0.000021898182,0.5503391,0.0010269949,0.00028778354,0.00009526558,0.00003234199,0.00011721213],"genre_scores_gemma":[0.03682492,0.00025113736,0.00009119802,0.90995705,0.00387687,0.000047675785,0.0006419689,0.000054452194,0.04825473],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977799,0.00072238763,0.0004973561,0.00076291687,0.000023185454,0.00021424903],"domain_scores_gemma":[0.9989028,0.00039900286,0.00012564982,0.00041707614,0.00009471298,0.000060742546],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0014566655,0.00022190376,0.0002767778,0.00005857158,0.00017009821,0.00010188313,0.000120006705,0.0014123514,0.00020557779],"category_scores_gemma":[0.001454702,0.0001679056,0.00012890463,0.0000817537,0.00036812,0.000004125252,0.0002505265,0.0008880341,0.0005293884],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009628599,0.0000142403605,0.00065751164,0.000028032948,0.000056667282,0.0000022001705,0.000031872005,4.891517e-8,0.20190792,8.9342296e-7,0.79582226,0.0013820835],"study_design_scores_gemma":[0.00015383727,0.0005077444,0.008539366,0.00004386658,0.00007204759,0.00010258209,0.000005884943,0.0000033875103,0.0012767959,0.000061568826,0.9890298,0.00020309926],"about_ca_topic_score_codex":0.000016781496,"about_ca_topic_score_gemma":0.000019685021,"teacher_disagreement_score":0.4109861,"about_ca_system_score_codex":0.000014556331,"about_ca_system_score_gemma":0.000075136646,"threshold_uncertainty_score":0.999884},"labels":[],"label_agreement":null},{"id":"W4403600184","doi":"10.1099/mgen.0.001308","title":"AMRColab – a user-friendly antimicrobial resistance detection and visualization tool","year":2024,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Ministry of Higher Education, Malaysia","keywords":"Visualization; User interface; Public health; Modular design; Interface (matter); Data science; Computer science; World Wide Web; Medicine; Data mining; Pathology","score_opus":0.006941000369148651,"score_gpt":0.23667288015914242,"score_spread":0.22973187978999376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403600184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9854045,0.00023201562,0.013294258,0.00010303298,0.0005650042,0.00020040803,0.000058321897,0.00005327953,0.00008919855],"genre_scores_gemma":[0.9952287,0.00011470122,0.0015642648,0.00017393914,0.00038429536,0.000006398705,0.00015337914,0.00003135127,0.0023429645],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991376,0.000047036734,0.0002211159,0.000404648,0.00003670821,0.0001529008],"domain_scores_gemma":[0.9996591,0.000008181015,0.000042118863,0.0001932153,0.0000622673,0.000035084344],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019086785,0.00011902346,0.000090223046,0.00005013932,0.00012503755,0.00025900104,0.00008106402,0.00012720293,0.000013476618],"category_scores_gemma":[0.00006745548,0.00013644072,0.00004059976,0.00011210209,0.000053754735,0.000011024868,0.00007288445,0.000062829764,0.000022447084],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056294077,0.000015266169,0.000049820803,0.00007879943,0.000015578082,0.0000012643586,0.0000734871,0.0000043340565,0.9942364,0.00013961391,0.003729836,0.0015992937],"study_design_scores_gemma":[0.00019518657,0.000048320315,0.00080963835,0.000028633063,0.000018766388,0.000022391772,0.000016810001,0.00013544314,0.65267855,0.000016552065,0.3458374,0.00019229419],"about_ca_topic_score_codex":0.00002582229,"about_ca_topic_score_gemma":0.00047613666,"teacher_disagreement_score":0.34210756,"about_ca_system_score_codex":0.00004333752,"about_ca_system_score_gemma":0.00006816069,"threshold_uncertainty_score":0.5563891},"labels":[],"label_agreement":null},{"id":"W4403645761","doi":"10.1128/spectrum.02276-24","title":"Multi-year comparison of VITEK MS performance for identification of rarely encountered pathogenic Gram-negative organisms (GNOs) in a large integrated Canadian healthcare region","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Bacilli; Clinical microbiology; 16S ribosomal RNA; Microbiology; Medicine; Biology; Bacteria; Genetics","score_opus":0.02020420071831334,"score_gpt":0.2825930307615503,"score_spread":0.26238883004323693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403645761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963133,0.000424008,0.0016100048,0.00032590155,0.0002996224,0.00047746266,0.00052695157,0.000014980029,0.000007796073],"genre_scores_gemma":[0.99765706,0.000049738206,0.00056036445,0.000043024946,0.00003437258,0.00002604535,0.0014799692,0.000018788844,0.00013060978],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986411,0.000112629445,0.0005647937,0.0003920135,0.000025050558,0.00026444855],"domain_scores_gemma":[0.9993498,0.000027756021,0.00017410192,0.00025396483,0.00014525867,0.00004915152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034661786,0.00013203376,0.00024215356,0.00017267225,0.00005734713,0.000017817585,0.00017429562,0.00022378105,0.00001662076],"category_scores_gemma":[0.00015749858,0.00013283215,0.00007703975,0.00023638274,0.000097122305,0.000008464271,0.000030431494,0.0001246037,0.0000063717257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008006386,0.00007061682,0.03007146,0.00014106849,0.000026708007,7.0284545e-7,0.0006269144,0.0000047904728,0.9683717,0.000119236756,0.00020574825,0.0002809991],"study_design_scores_gemma":[0.0006656135,0.00034087696,0.045955334,0.00011373095,0.000016743128,0.000013790573,0.0007486913,0.0016172571,0.94879836,0.00005292786,0.0015020183,0.00017468608],"about_ca_topic_score_codex":0.004217909,"about_ca_topic_score_gemma":0.11157165,"teacher_disagreement_score":0.10735374,"about_ca_system_score_codex":0.00009349526,"about_ca_system_score_gemma":0.00028234755,"threshold_uncertainty_score":0.90463984},"labels":[],"label_agreement":null},{"id":"W4403749945","doi":"10.1093/jacamr/dlae157","title":"Evaluating the costs of <i>Escherichia coli</i> bloodstream infections: a population-based cohort study in a large metropolitan Canadian region","year":2024,"lang":"en","type":"article","venue":"JAC-Antimicrobial Resistance","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Alberta Health Services","funders":"Ministry of Economic Development and Trade, Government of Alberta; Ministero dello Sviluppo Economico; Government of Alberta","keywords":"Medicine; Sulfamethoxazole; Trimethoprim; Population; Ceftriaxone; Cohort; Escherichia coli; Retrospective cohort study; Internal medicine; Bacteremia; Microbiology; Antibiotics; Biology; Environmental health","score_opus":0.020311433650915443,"score_gpt":0.312479416300163,"score_spread":0.2921679826492476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403749945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977675,0.00016988271,0.00013908275,0.00032936432,0.00026240063,0.00085072144,0.00006374935,0.000022476455,0.0003948377],"genre_scores_gemma":[0.9987114,0.000011317496,0.0003282821,0.00020306223,0.000085111154,0.00006321446,0.00014993973,0.00002296301,0.00042468365],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984031,0.00033720117,0.0004294241,0.00043040753,0.00013962957,0.00026029474],"domain_scores_gemma":[0.9991319,0.000081811864,0.000110765555,0.00046406977,0.00014596398,0.00006549928],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090515765,0.00014166588,0.00018104004,0.00012338058,0.00017410274,0.000099256686,0.00017647695,0.00009602869,0.00001739566],"category_scores_gemma":[0.00079223525,0.00012899136,0.00008704793,0.0005278812,0.000047685735,0.000009465973,0.00002821208,0.00014202436,0.0000045832767],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005305339,0.00020916839,0.72064435,0.00006323147,0.000048914197,0.0000044348594,0.00007412856,0.00006591606,0.27763218,0.0003208291,0.0007867069,0.000097072494],"study_design_scores_gemma":[0.0007424844,0.00022877824,0.98312616,0.00027593333,0.00009936841,0.0000028539662,0.00025798817,0.0009362099,0.0119526675,0.000032726326,0.0020527793,0.0002920468],"about_ca_topic_score_codex":0.062115237,"about_ca_topic_score_gemma":0.54108816,"teacher_disagreement_score":0.4789729,"about_ca_system_score_codex":0.00029299903,"about_ca_system_score_gemma":0.00048104156,"threshold_uncertainty_score":0.94413024},"labels":[],"label_agreement":null},{"id":"W4403868667","doi":"10.1099/jmm.0.001915","title":"Identification methods as a factor affecting the performance of clinical microbiology laboratories participating in an external quality assessment program: a cross-sectional, retrospective analysis","year":2024,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"External quality assessment; Medicine; Clinical microbiology; Confidence interval; Medical physics; Medical laboratory; Biology; Internal medicine; Pathology; Microbiology","score_opus":0.08818380196462175,"score_gpt":0.5292822937185726,"score_spread":0.4410984917539509,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403868667","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951942,0.0003328205,0.002897753,0.00021138146,0.001154076,0.00016185905,0.000031656677,0.000010867869,0.0000053739423],"genre_scores_gemma":[0.99539155,0.000088067885,0.003909189,0.00006932191,0.00044563285,0.000022307258,0.00004696092,0.000009827965,0.000017131724],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9948965,0.002347066,0.001991539,0.00039968948,0.00014011531,0.00022514044],"domain_scores_gemma":[0.997635,0.00049483555,0.0008988156,0.00028027804,0.0005878804,0.00010318173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012434872,0.00013790492,0.0005066655,0.00014559676,0.0000886904,0.00010959168,0.00042924302,0.00040532908,0.00016363677],"category_scores_gemma":[0.0042788987,0.00009583747,0.00029012305,0.0004939519,0.00043634788,0.000027821585,0.00011516884,0.0006502632,0.000001733972],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058988488,0.00013440209,0.46919033,0.00002839284,0.00017690168,0.0000017943261,0.0001139928,0.000011658209,0.52571636,0.00004199879,0.0000068013246,0.004518358],"study_design_scores_gemma":[0.00036727887,0.0007847807,0.95484996,0.000048754606,0.00008023699,0.000102979284,0.00014677721,0.0009816155,0.04200476,0.000041046897,0.0004870755,0.000104757884],"about_ca_topic_score_codex":0.000052807714,"about_ca_topic_score_gemma":0.00018998404,"teacher_disagreement_score":0.4856596,"about_ca_system_score_codex":0.00006170536,"about_ca_system_score_gemma":0.00052169006,"threshold_uncertainty_score":0.512255},"labels":[],"label_agreement":null},{"id":"W4403870935","doi":"10.1128/spectrum.02100-24","title":"Real-time plasmid transmission detection pipeline","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Queensland University of Technology; Public Health Agency; Public Health Agency of Canada","keywords":"Plasmid; Nanopore sequencing; Pipeline (software); Computer science; Software; Pairwise comparison; Biology; Typing; Computational biology; Genome; Genetics; Artificial intelligence; Gene; Operating system","score_opus":0.006143729937134133,"score_gpt":0.23018678559006103,"score_spread":0.2240430556529269,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403870935","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914519,0.00031379875,0.0047968314,0.0009523434,0.00063657144,0.00015335827,0.00003707046,0.00016447635,0.0014936328],"genre_scores_gemma":[0.9923332,0.00014201882,0.0004578699,0.00008468658,0.00038829778,0.0000074500867,0.0005111935,0.00002460278,0.0060506957],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902517,0.00007783841,0.0002139167,0.00044638105,0.000021638454,0.00021504948],"domain_scores_gemma":[0.999662,0.000015535308,0.000028391298,0.00022326043,0.000021567066,0.000049249786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020373077,0.00013192029,0.00011277931,0.000060864622,0.000083814404,0.000044282784,0.0001120507,0.00020911141,0.0004190104],"category_scores_gemma":[0.000027181619,0.00012218385,0.00009104478,0.000100888465,0.000067761066,0.000003953181,0.0000366701,0.000103720784,0.00038652416],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042892185,0.000021341903,0.00003667439,0.000017855471,0.000017189639,0.0000029256855,0.000026164473,0.00000277987,0.9919995,0.000025829631,0.0033630622,0.0044437815],"study_design_scores_gemma":[0.0001283168,0.0001049018,0.0002500471,0.000014182018,0.000012526837,0.000094992436,0.0000065138356,0.00039899923,0.8430956,0.000082508224,0.15567571,0.0001357196],"about_ca_topic_score_codex":0.000031148647,"about_ca_topic_score_gemma":0.00004875091,"teacher_disagreement_score":0.15231265,"about_ca_system_score_codex":0.000024298126,"about_ca_system_score_gemma":0.000045130175,"threshold_uncertainty_score":0.49825123},"labels":[],"label_agreement":null},{"id":"W4404024054","doi":"10.1128/cmr.00087-24","title":"American Society for Microbiology evidence-based laboratory medicine practice guidelines to reduce blood culture contamination rates: a systematic review and meta-analysis","year":2024,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Quest University Canada","funders":"National Cancer Institute; Centers for Disease Control and Prevention","keywords":"Phlebotomy; Medicine; Blood culture; Venipuncture; Systematic review; Guideline; Meta-analysis; MEDLINE; False positive paradox; Best practice; Family medicine; Clinical microbiology; Intensive care medicine; Pathology; Surgery; Antibiotics; Biology; Statistics","score_opus":0.3181538154118351,"score_gpt":0.5269994128076352,"score_spread":0.2088455973958001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404024054","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000034851655,0.9846625,0.00034564472,0.006030069,0.00026880883,0.007851541,0.0008021877,0.00003314674,0.000002620211],"genre_scores_gemma":[9.507862e-7,0.95228,0.0073239086,0.033348687,0.00037664556,0.0023355477,0.0031064525,0.0000576053,0.0011702324],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.9878488,0.0045643207,0.0052245865,0.001951179,0.00003395255,0.00037713497],"domain_scores_gemma":[0.99141526,0.0016657647,0.003236238,0.0014444069,0.0020288697,0.00020946436],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.012561636,0.0008611468,0.011216975,0.00013345468,0.00011966849,0.00006239677,0.0006809664,0.0008178266,0.00004275847],"category_scores_gemma":[0.054793466,0.00050533056,0.0053748195,0.001137533,0.0005879437,0.000013473172,0.00023355985,0.0004933126,0.0000759251],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001820166,0.000115014365,7.487018e-7,0.6996938,0.08559446,9.3405947e-7,0.000023623694,9.187614e-8,0.012721356,0.000009301107,0.19782254,0.0039999443],"study_design_scores_gemma":[0.00007596545,0.00036260817,4.7538784e-8,0.021791711,0.43449458,0.000033502354,0.000012465101,3.5194577e-7,0.00000687719,5.2451344e-7,0.54295063,0.00027070032],"about_ca_topic_score_codex":0.000009405756,"about_ca_topic_score_gemma":0.000030399066,"teacher_disagreement_score":0.67790204,"about_ca_system_score_codex":0.000054742588,"about_ca_system_score_gemma":0.00045878426,"threshold_uncertainty_score":0.9997398},"labels":[],"label_agreement":null},{"id":"W4404199762","doi":"10.1038/s41467-024-53930-x","title":"Next-generation rapid phenotypic antimicrobial susceptibility testing","year":2024,"lang":"en","type":"review","venue":"Nature Communications","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; University of Toronto","funders":"Fonds de Recherche du Québec - Santé; Pfizer Canada; McGill University Health Centre; Pfizer","keywords":"Phenotype; Antimicrobial; Biology; Computational biology; Genetics; Microbiology; Gene","score_opus":0.1415161601141543,"score_gpt":0.3699858154540491,"score_spread":0.22846965533989483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404199762","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017228852,0.99655235,0.00002869429,0.00019638844,0.001020662,0.0007465299,0.00018087286,0.00012047119,0.0009817209],"genre_scores_gemma":[0.009048373,0.97493136,0.0058664065,0.0001405811,0.00107541,0.000108277236,0.008261874,0.000089142144,0.0004785921],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974458,0.000576506,0.00078536465,0.0007976446,0.00013041223,0.0002642544],"domain_scores_gemma":[0.9955667,0.00013079989,0.00032710997,0.0035401033,0.00034408495,0.00009117637],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006872408,0.00042728023,0.0006249922,0.00013993027,0.00039027145,0.00035316587,0.0014988239,0.0012098273,0.000028331271],"category_scores_gemma":[0.0015836396,0.00039349508,0.00042749813,0.0005758291,0.0001783982,0.000013254988,0.0008941135,0.0014450537,0.00017290511],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000036693511,0.00020990995,0.0000239041,0.0034285083,0.00022738011,8.720908e-7,0.000040823084,5.979945e-7,0.05749376,0.0005843065,0.034784257,0.903202],"study_design_scores_gemma":[0.00005947204,0.000028802131,0.0000134080665,0.0009580246,0.00052435725,0.000024346631,0.000007730068,0.000083128056,0.00010728669,0.00001415035,0.9977965,0.00038284028],"about_ca_topic_score_codex":0.000015958776,"about_ca_topic_score_gemma":0.00046507618,"teacher_disagreement_score":0.9630122,"about_ca_system_score_codex":0.00009439819,"about_ca_system_score_gemma":0.0005018154,"threshold_uncertainty_score":0.9998517},"labels":[],"label_agreement":null},{"id":"W4404373191","doi":"10.1039/d4ay01489h","title":"Low-cost, real-time detection of bacterial growth <i>via</i> diffraction-based sensing","year":2024,"lang":"en","type":"article","venue":"Analytical Methods","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Bacterial growth; Bacteria; Computer science; Chemistry; Biology","score_opus":0.020908154859012804,"score_gpt":0.34018876959182137,"score_spread":0.31928061473280855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404373191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5569906,0.000022893735,0.4411372,0.00014458683,0.0006559779,0.00015008611,0.000011878206,0.00006715955,0.00081958633],"genre_scores_gemma":[0.96508384,0.000013274916,0.03397871,0.000051101386,0.0004500325,0.0000036532538,0.00009647103,0.000024567265,0.00029833333],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986473,0.00036982883,0.00034173304,0.00037439453,0.000099845725,0.00016690255],"domain_scores_gemma":[0.99919033,0.0002319362,0.00006479345,0.00027858527,0.0001500147,0.00008432236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084691343,0.00012543025,0.00018568536,0.000076007556,0.00005389078,0.00006712435,0.00007696623,0.00016130944,0.00011396249],"category_scores_gemma":[0.0009693851,0.00012055365,0.00016434879,0.00022678405,0.0000821984,0.000007982045,0.00003454154,0.000101631515,0.00002353908],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006310616,0.000032960023,0.000035174886,0.000056746878,0.000034341847,0.0000013906239,0.000008570942,0.00000764393,0.94483876,0.000035689944,0.000072514114,0.054813102],"study_design_scores_gemma":[0.0001447598,0.000073852956,0.0012232615,0.00003096316,0.000071814145,0.00000666476,0.000007637372,0.059852257,0.9362727,0.00017819679,0.001996949,0.00014098377],"about_ca_topic_score_codex":0.00007805483,"about_ca_topic_score_gemma":0.000011190271,"teacher_disagreement_score":0.4080932,"about_ca_system_score_codex":0.000026340573,"about_ca_system_score_gemma":0.00006851562,"threshold_uncertainty_score":0.4916035},"labels":[],"label_agreement":null},{"id":"W4404484975","doi":"10.1101/2024.11.11.24316818","title":"Transforming diagnostic capacity by syndromic infection testing for remote isolated communities","year":2024,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Island Health","funders":"","keywords":"Diagnostic test; Medicine; Pediatrics","score_opus":0.043299505659741916,"score_gpt":0.27955931239021764,"score_spread":0.23625980673047572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404484975","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886111,0.00035820308,0.008591466,0.00012892102,0.0010908749,0.000691735,0.00023543862,0.00012590321,0.00016635109],"genre_scores_gemma":[0.997035,0.000094692405,0.0010415901,0.00005290817,0.00022904594,0.000076969394,0.0011577348,0.00005714155,0.0002548723],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871314,0.00012624577,0.00041776494,0.00042169786,0.00008146566,0.0002396929],"domain_scores_gemma":[0.9988787,0.00023382134,0.00013866305,0.0004969273,0.0001877207,0.00006417504],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00056727516,0.00026019017,0.000245179,0.00006516981,0.0001867179,0.00016475198,0.00021812742,0.00039813746,0.000010763997],"category_scores_gemma":[0.0013709139,0.00028289206,0.00016111281,0.00008593032,0.000080327176,0.0000036572458,0.00025823765,0.00045249896,0.000010545548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002086149,0.000041922194,0.011277109,0.0010269962,0.00009557363,9.68707e-7,0.00030274957,0.000076487944,0.98233443,0.0000105956115,0.0005431163,0.004269168],"study_design_scores_gemma":[0.0025624223,0.0020268646,0.0432638,0.006329602,0.0015290082,0.00031101247,0.0005811251,0.073457584,0.8104592,0.017725952,0.036671236,0.0050822147],"about_ca_topic_score_codex":0.0014055904,"about_ca_topic_score_gemma":0.0006118554,"teacher_disagreement_score":0.17187527,"about_ca_system_score_codex":0.000044728968,"about_ca_system_score_gemma":0.00009053667,"threshold_uncertainty_score":0.99996233},"labels":[],"label_agreement":null},{"id":"W4404539334","doi":"10.1056/nejmoa2404991","title":"Antibiotic Treatment for 7 versus 14 Days in Patients with Bloodstream Infections","year":2024,"lang":"en","type":"article","venue":"New England Journal of Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Health Research Council of New Zealand; Canadian Institutes of Health Research; Australian Medical Council; Ontario Ministry of Health and Long-Term Care","keywords":"Antibiotics; Medicine; Bloodstream infection; Intensive care medicine; Internal medicine; Microbiology; Biology","score_opus":0.018928684418245013,"score_gpt":0.2850127358257774,"score_spread":0.2660840514075324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404539334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99748814,0.00028845418,0.00057196105,0.0005607459,0.000831207,0.00011428399,0.000005068082,0.0000042114107,0.00013595106],"genre_scores_gemma":[0.9982476,0.000067602836,0.0002574467,0.00001825436,0.0011683906,8.0719815e-7,0.00005036726,0.000007917846,0.00018158778],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9995143,0.000025772879,0.0002035915,0.00010260178,0.00007347198,0.00008026501],"domain_scores_gemma":[0.9996375,0.000056373523,0.00006131999,0.00008423056,0.0000941964,0.00006638689],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019046555,0.000070903836,0.00012219696,0.00007448152,0.000021646976,0.000014145585,0.000040316136,0.000036129517,0.00001591725],"category_scores_gemma":[0.00023201384,0.00004401236,0.00003248256,0.00007552776,0.00002673881,0.0000050638887,0.000005107509,0.000050044036,7.0334335e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0051257457,0.0011756185,0.39735147,0.00016115441,0.00070410565,0.000033282256,0.001217395,0.00023881231,0.12895918,0.00020202746,0.006368022,0.4584632],"study_design_scores_gemma":[0.29750603,0.0669809,0.32932514,0.0014169295,0.0008937979,0.00016739989,0.0003985573,0.00023954791,0.022863898,0.00024700543,0.27939266,0.0005681554],"about_ca_topic_score_codex":0.000041473846,"about_ca_topic_score_gemma":0.0002415907,"teacher_disagreement_score":0.45789504,"about_ca_system_score_codex":0.000025564028,"about_ca_system_score_gemma":0.00009470557,"threshold_uncertainty_score":0.1794772},"labels":[],"label_agreement":null},{"id":"W4404766329","doi":"10.3390/genes15121519","title":"Comparative Evolutionary Genomics Reveals Genetic Diversity and Differentiation in Bacteroides fragilis","year":2024,"lang":"en","type":"article","venue":"Genes","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Biology; Bacteroides fragilis; Genome; Genetics; Gene; Comparative genomics; Genetic diversity; Genomics; Evolutionary biology; Population; Bacteria","score_opus":0.0272802099750164,"score_gpt":0.2578771162880721,"score_spread":0.23059690631305568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404766329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99651664,0.0027023868,0.00035490232,0.00006771879,0.00017291137,0.00010588117,0.000019135152,0.000015052035,0.00004534511],"genre_scores_gemma":[0.998571,0.00032409426,0.0006271811,0.000035844798,0.000106149666,0.0000059394856,0.00009699547,0.0000052835285,0.00022754104],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99942255,0.000055616212,0.00013107894,0.000255073,0.0000443429,0.00009135929],"domain_scores_gemma":[0.9997827,0.0000151214745,0.000022464872,0.00011690662,0.000031880678,0.000030935877],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000712661,0.000074070704,0.00008388889,0.000043164815,0.00013144346,0.000038459228,0.0000620664,0.000060716604,0.000019956688],"category_scores_gemma":[0.000020525604,0.000076516175,0.000026145693,0.00005576877,0.000038048533,0.000006486641,0.0002333949,0.000038125007,0.0000071226304],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012245726,0.000017465525,0.20701535,0.00003278886,0.000016463773,0.0000011592774,0.00051077537,0.00001710382,0.7901407,0.000029394087,0.00025407938,0.0019524954],"study_design_scores_gemma":[0.00009741516,0.00002678418,0.9847319,0.00001442422,0.000010438143,0.000005478425,0.0001065605,0.0009546402,0.011927164,0.00034794203,0.0016750123,0.000102221056],"about_ca_topic_score_codex":0.0000506829,"about_ca_topic_score_gemma":0.000113546645,"teacher_disagreement_score":0.7782135,"about_ca_system_score_codex":0.00002217562,"about_ca_system_score_gemma":0.000018071716,"threshold_uncertainty_score":0.3120239},"labels":[],"label_agreement":null},{"id":"W4404852518","doi":"10.1128/spectrum.01366-24","title":"Rapid inference of antibiotic susceptibility phenotype of uropathogens using metagenomic sequencing with neighbor typing","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System; University Health Network; University of Toronto; Canadian Electricity Association; Canada Research Chairs; Ottawa Hospital","funders":"Canadian Institutes of Health Research; Joint Programming Initiative on Antimicrobial Resistance; Pfizer","keywords":"Multilocus sequence typing; Metagenomics; Typing; Biology; Genetics; Computational biology; Microbiology; Genotype; Gene","score_opus":0.025290192113939444,"score_gpt":0.26107532736525274,"score_spread":0.23578513525131328,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404852518","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99547535,0.0010630196,0.0027696881,0.00003830538,0.00023089755,0.00017385352,0.00008469336,0.000024455187,0.0001397452],"genre_scores_gemma":[0.9969848,0.0000528469,0.002681956,0.000023930705,0.000077488534,7.788957e-7,0.000108157656,0.000022208429,0.000047833044],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987125,0.00014317517,0.00039721114,0.0004800396,0.000029226292,0.00023785516],"domain_scores_gemma":[0.99925196,0.00004021549,0.00015335063,0.00042889724,0.0000888345,0.000036729158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040163586,0.00016669623,0.0002827773,0.000090350826,0.000050022685,0.000019263196,0.0001798159,0.00013908038,0.000091620954],"category_scores_gemma":[0.00011628475,0.0001454031,0.000096194686,0.00019826587,0.00028451433,0.000007627505,0.00009658855,0.000110666966,0.0000071133663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006141685,0.000027958355,0.005938253,0.00013680884,0.00008913037,0.0000022022627,0.000098205644,0.000059649257,0.9928004,0.00019400206,0.0000065522013,0.00058538007],"study_design_scores_gemma":[0.00016507531,0.00027513577,0.004344729,0.00008282046,0.00007487777,0.000048178612,0.000096110765,0.00040184057,0.9939907,0.00005010623,0.00029194952,0.00017846946],"about_ca_topic_score_codex":0.00009908728,"about_ca_topic_score_gemma":0.00017337105,"teacher_disagreement_score":0.001593524,"about_ca_system_score_codex":0.000048661375,"about_ca_system_score_gemma":0.00028384483,"threshold_uncertainty_score":0.59293664},"labels":[],"label_agreement":null},{"id":"W4405102475","doi":"10.1002/9781683674849.mcm0025","title":"General Approaches to the Identification of Aerobic Gram‐Positive Rods","year":2023,"lang":"en","type":"other","venue":"ClinMicroNow","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Gram; Identification (biology); Biology; Ecology; Bacteria; Paleontology","score_opus":0.06190901218158711,"score_gpt":0.2790085023854778,"score_spread":0.2170994902038907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405102475","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7211009,0.0074447123,0.036930397,0.01161131,0.021785079,0.01456621,0.004599666,0.002010273,0.17995141],"genre_scores_gemma":[0.1516712,0.00015700632,0.0013287815,0.00019037222,0.0018516973,0.00012625652,0.0014157578,0.0006520887,0.84260684],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99882466,0.00009895106,0.00038524807,0.00045430745,0.00008054676,0.00015628163],"domain_scores_gemma":[0.9988857,0.000015115809,0.00029844657,0.0007054799,0.000050005227,0.000045271747],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003992278,0.000166013,0.00018055523,0.000070458744,0.000052583422,0.000043323453,0.00034316373,0.00024548842,0.00005293341],"category_scores_gemma":[0.00018220143,0.00014082706,0.00011842664,0.00013463851,0.00008817455,0.0000014582143,0.0001285581,0.000087910805,0.00020751698],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020692869,0.0000683209,0.0003124748,0.000054746964,0.00013389913,3.081399e-7,0.00011770092,0.000030369747,0.72264236,0.00020231171,0.2677411,0.00867569],"study_design_scores_gemma":[0.00032975603,0.00012549682,0.011791263,0.000121235535,0.00012983069,0.000004347492,0.00013013184,0.0000793949,0.26648474,0.000050132505,0.720191,0.00056264905],"about_ca_topic_score_codex":0.00014000892,"about_ca_topic_score_gemma":0.0009749282,"teacher_disagreement_score":0.6626554,"about_ca_system_score_codex":0.00001567751,"about_ca_system_score_gemma":0.00005004544,"threshold_uncertainty_score":0.5742761},"labels":[],"label_agreement":null},{"id":"W4405176815","doi":"10.1002/9781683674849.mcm0075","title":"Antimicrobial Susceptibility Testing Systems","year":2023,"lang":"en","type":"other","venue":"ClinMicroNow","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health","funders":"","keywords":"Antimicrobial; Biology; Microbiology","score_opus":0.035648749147891894,"score_gpt":0.28127873479356635,"score_spread":0.24562998564567445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405176815","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2336739,0.005486685,0.0019422953,0.00045719888,0.03676395,0.0065357396,0.0031367654,0.008425575,0.7035779],"genre_scores_gemma":[0.06718001,0.00015476088,0.0013118412,0.000111833826,0.00423201,0.000042994314,0.00094371155,0.0018165449,0.9242063],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981905,0.000114179384,0.00042498112,0.0008366402,0.00009344528,0.0003402606],"domain_scores_gemma":[0.9985353,0.000039407732,0.00031032017,0.0009095385,0.00010953215,0.00009591052],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00041688138,0.00030727824,0.00032960542,0.00009586021,0.000080957965,0.00011701934,0.0003330202,0.00058238866,0.0001547349],"category_scores_gemma":[0.0007995381,0.000333339,0.00013114087,0.00015764257,0.00012563117,0.0000020593247,0.00019287212,0.00017937632,0.0008111788],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008765295,0.000050225583,0.004976606,0.00016364867,0.000058698526,0.0000029939415,0.0000069906114,0.0000048339743,0.39310867,0.000007532072,0.60001373,0.0015972924],"study_design_scores_gemma":[0.00044406726,0.00007447616,0.00272293,0.00034570688,0.00006157742,0.000018169507,0.000034095578,0.00004487468,0.0049706083,0.0000047368444,0.9905596,0.00071917346],"about_ca_topic_score_codex":0.0006368161,"about_ca_topic_score_gemma":0.0014609771,"teacher_disagreement_score":0.39054585,"about_ca_system_score_codex":0.0000352858,"about_ca_system_score_gemma":0.00013194358,"threshold_uncertainty_score":0.9999668},"labels":[],"label_agreement":null},{"id":"W4405232890","doi":"10.1002/9781683674849.cmph0021","title":"Identification of Gram‐Positive Bacteria","year":2023,"lang":"en","type":"other","venue":"ClinMicroNow","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Identification (biology); Gram; Bacteria; Gram-negative bacteria; Microbiology; Computational biology; Biology; Gram-positive bacteria; Genetics; Escherichia coli; Botany; Gene","score_opus":0.01294066022747802,"score_gpt":0.27878716509157375,"score_spread":0.2658465048640957,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405232890","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.67053413,0.004665807,0.007841733,0.0009939246,0.024754908,0.006566845,0.00872067,0.002902506,0.2730195],"genre_scores_gemma":[0.12653668,0.00042228095,0.0004868304,0.000052455285,0.0010317528,0.000037201044,0.0018983668,0.0009101048,0.8686243],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989452,0.000060191698,0.00038628335,0.00040755887,0.00006598265,0.0001348022],"domain_scores_gemma":[0.9989055,0.000013463052,0.00041297884,0.0005454858,0.00008188662,0.000040706585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021316088,0.00015798186,0.00020289994,0.000085027816,0.000025597945,0.0000282027,0.0002057116,0.00033146562,0.0002480052],"category_scores_gemma":[0.00020449974,0.00017523255,0.00011352671,0.00008468331,0.00009515023,0.0000016265341,0.00008107804,0.00006926825,0.00027653325],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000112829475,0.000037171772,0.00029559963,0.000052059993,0.00006494423,3.492503e-7,0.00001680062,2.005667e-7,0.88058907,0.000026857406,0.11663762,0.0022680762],"study_design_scores_gemma":[0.00046068462,0.0001041556,0.01639628,0.00021489702,0.00010413902,0.000003824739,0.000053249576,0.000009218352,0.51914245,0.00005308439,0.46292755,0.0005304754],"about_ca_topic_score_codex":0.000077643235,"about_ca_topic_score_gemma":0.00033755435,"teacher_disagreement_score":0.59560484,"about_ca_system_score_codex":0.0000129663285,"about_ca_system_score_gemma":0.00005253019,"threshold_uncertainty_score":0.7145776},"labels":[],"label_agreement":null},{"id":"W4405232983","doi":"10.1002/9781683674849.cmph0025","title":"Specimen Selection, Collection, and Transport for Anaerobic Culture","year":2023,"lang":"en","type":"other","venue":"ClinMicroNow","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Selection (genetic algorithm); Anaerobic exercise; Computer science; Biology; Artificial intelligence","score_opus":0.013991715609933031,"score_gpt":0.26919450932287925,"score_spread":0.25520279371294624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405232983","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.29677275,0.02840277,0.05362998,0.0044807433,0.036561478,0.0326733,0.008293534,0.011199986,0.52798545],"genre_scores_gemma":[0.0031132358,0.00069821347,0.0025189456,0.00008109785,0.0012106851,0.00007520507,0.00080206466,0.00044721668,0.99105334],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99915653,0.000019472676,0.00018817563,0.00045237213,0.000035569243,0.00014786793],"domain_scores_gemma":[0.9995751,0.000007009908,0.00011091004,0.00018206122,0.00007325771,0.000051676496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011900347,0.00016335252,0.00016965106,0.000059839313,0.00009032887,0.000025762309,0.00007951513,0.00037108824,0.00015030023],"category_scores_gemma":[0.000051592437,0.00017148227,0.00007712932,0.00009731203,0.000051444953,0.0000014467482,0.000015843749,0.00007019548,0.000023068642],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023944665,0.00002443304,0.00153306,0.000067505454,0.00008799111,1.8063528e-7,0.00004135927,4.3806995e-7,0.14949761,0.000018491663,0.8481123,0.000592693],"study_design_scores_gemma":[0.00037072378,0.00009366855,0.0023054122,0.000032127136,0.00004796581,0.0000043914324,0.000029452063,0.000004389028,0.006417572,0.000022025652,0.99046206,0.00021021263],"about_ca_topic_score_codex":0.000093230476,"about_ca_topic_score_gemma":0.004629861,"teacher_disagreement_score":0.46306786,"about_ca_system_score_codex":0.00001723166,"about_ca_system_score_gemma":0.00006201202,"threshold_uncertainty_score":0.69928443},"labels":[],"label_agreement":null},{"id":"W4405233309","doi":"10.1002/9781683674849.cmph0037","title":"Anaerobic Cocci","year":2023,"lang":"en","type":"other","venue":"ClinMicroNow","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Anaerobic exercise; Gram-Positive Cocci; Microbiology; Biology; Paleontology; Bacteria; Staphylococcus aureus","score_opus":0.018409203837209964,"score_gpt":0.28085992467311616,"score_spread":0.2624507208359062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405233309","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.044124052,0.0052529727,0.0009047229,0.00072563597,0.011124341,0.0019673125,0.00087972375,0.003330611,0.93169063],"genre_scores_gemma":[0.0032950456,0.00035154427,0.0006221024,0.00014267718,0.0012171448,0.000016666603,0.0005994235,0.00079126586,0.99296415],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99915445,0.000035213,0.00017672937,0.00041693947,0.000046678328,0.00016999904],"domain_scores_gemma":[0.99925345,0.000007657395,0.00012232109,0.00053382985,0.000027193626,0.000055566616],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001203562,0.00015929285,0.00015633776,0.00005944259,0.00003133823,0.00003321263,0.00019286918,0.00035229474,0.00078448874],"category_scores_gemma":[0.00013706821,0.00017161373,0.00009349884,0.00006391195,0.00005702419,6.0728456e-7,0.00009153861,0.00008641438,0.0013932987],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000038196463,0.000017710641,0.000338715,0.000022083257,0.00003967441,0.0000011194687,0.0000042255856,1.9118578e-7,0.16977724,0.000014522841,0.8270517,0.0027290222],"study_design_scores_gemma":[0.00014785082,0.000026484116,0.00084942917,0.00004089136,0.000016401691,0.0000016283902,0.000008157889,0.0000013087911,0.005322214,0.000007788801,0.9933796,0.00019824892],"about_ca_topic_score_codex":0.00009252856,"about_ca_topic_score_gemma":0.0014907871,"teacher_disagreement_score":0.16632792,"about_ca_system_score_codex":0.000011397286,"about_ca_system_score_gemma":0.000053019492,"threshold_uncertainty_score":0.9993842},"labels":[],"label_agreement":null},{"id":"W4406256502","doi":"10.1101/2025.01.07.631773","title":"Biased sampling confounds machine learning prediction of antimicrobial resistance","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Sampling (signal processing); Artificial intelligence; Machine learning; Resistance (ecology); Antimicrobial; Computer science; Statistics; Mathematics; Biology; Microbiology; Ecology; Computer vision","score_opus":0.02115353240114829,"score_gpt":0.24122346001339232,"score_spread":0.22006992761224403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406256502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919637,0.00051582395,0.00473886,0.00006801275,0.0011434678,0.00040665874,0.0009949546,0.00013413401,0.00003440015],"genre_scores_gemma":[0.9940802,0.00021395068,0.0050969166,0.00006986492,0.00033566199,0.000032682125,0.000021123256,0.000043363194,0.000106261235],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979084,0.00018352296,0.0006447062,0.0008222315,0.00016505874,0.000276082],"domain_scores_gemma":[0.9978467,0.00003605358,0.0005090082,0.00089673424,0.0006203389,0.00009116863],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006487202,0.00032337077,0.0003839224,0.00015198466,0.00016174078,0.00011348255,0.00037056144,0.000512217,0.00002893807],"category_scores_gemma":[0.000890301,0.00039547408,0.00016080159,0.00023271404,0.00011354095,0.000007872399,0.00037308756,0.00044552053,0.0000037530408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007517588,0.00006949907,0.012263621,0.0005870286,0.000091145295,9.645067e-7,0.0000049080827,0.00018412394,0.9864628,0.000063184176,0.00019622745,0.000001337096],"study_design_scores_gemma":[0.000534998,0.00003680501,0.043019705,0.00060624094,0.000092604,8.338291e-9,0.00000213454,0.00035366163,0.9420033,7.6799813e-7,0.012963087,0.00038667122],"about_ca_topic_score_codex":0.000059781843,"about_ca_topic_score_gemma":0.000018187606,"teacher_disagreement_score":0.04445947,"about_ca_system_score_codex":0.000067593566,"about_ca_system_score_gemma":0.00047448784,"threshold_uncertainty_score":0.99984974},"labels":[],"label_agreement":null},{"id":"W4406352183","doi":"10.1002/9781683670438.cmph0037","title":"Anaerobic Cocci","year":2023,"lang":"en","type":"other","venue":"ClinMicroNow","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Anaerobic exercise; Biology; Microbiology","score_opus":0.018409203837209964,"score_gpt":0.28085992467311616,"score_spread":0.2624507208359062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406352183","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.044124052,0.0052529727,0.0009047229,0.00072563597,0.011124341,0.0019673125,0.00087972375,0.003330611,0.93169063],"genre_scores_gemma":[0.0032950456,0.00035154427,0.0006221024,0.00014267718,0.0012171448,0.000016666603,0.0005994235,0.00079126586,0.99296415],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99915445,0.000035213,0.00017672937,0.00041693947,0.000046678328,0.00016999904],"domain_scores_gemma":[0.99925345,0.000007657395,0.00012232109,0.00053382985,0.000027193626,0.000055566616],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001203562,0.00015929285,0.00015633776,0.00005944259,0.00003133823,0.00003321263,0.00019286918,0.00035229474,0.00078448874],"category_scores_gemma":[0.00013706821,0.00017161373,0.00009349884,0.00006391195,0.00005702419,6.0728456e-7,0.00009153861,0.00008641438,0.0013932987],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000038196463,0.000017710641,0.000338715,0.000022083257,0.00003967441,0.0000011194687,0.0000042255856,1.9118578e-7,0.16977724,0.000014522841,0.8270517,0.0027290222],"study_design_scores_gemma":[0.00014785082,0.000026484116,0.00084942917,0.00004089136,0.000016401691,0.0000016283902,0.000008157889,0.0000013087911,0.005322214,0.000007788801,0.9933796,0.00019824892],"about_ca_topic_score_codex":0.00009252856,"about_ca_topic_score_gemma":0.0014907871,"teacher_disagreement_score":0.16632792,"about_ca_system_score_codex":0.000011397286,"about_ca_system_score_gemma":0.000053019492,"threshold_uncertainty_score":0.9993842},"labels":[],"label_agreement":null},{"id":"W4406352282","doi":"10.1002/9781683670438.mcm0025","title":"General Approaches to the Identification of Aerobic Gram‐Positive Rods","year":2023,"lang":"en","type":"other","venue":"ClinMicroNow","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Rod; Orange (colour); Bacteria; Gram; Clinical microbiology; Agar plate; Agar; Matrix-assisted laser desorption/ionization; Biology; Mass spectrometry; Microbiology; Chemistry; Desorption; Chromatography; Food science; Genetics; Medicine; Pathology","score_opus":0.06190901218158711,"score_gpt":0.2790085023854778,"score_spread":0.2170994902038907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406352282","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7211009,0.0074447123,0.036930397,0.01161131,0.021785079,0.01456621,0.004599666,0.002010273,0.17995141],"genre_scores_gemma":[0.1516712,0.00015700632,0.0013287815,0.00019037222,0.0018516973,0.00012625652,0.0014157578,0.0006520887,0.84260684],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99882466,0.00009895106,0.00038524807,0.00045430745,0.00008054676,0.00015628163],"domain_scores_gemma":[0.9988857,0.000015115809,0.00029844657,0.0007054799,0.000050005227,0.000045271747],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003992278,0.000166013,0.00018055523,0.000070458744,0.000052583422,0.000043323453,0.00034316373,0.00024548842,0.00005293341],"category_scores_gemma":[0.00018220143,0.00014082706,0.00011842664,0.00013463851,0.00008817455,0.0000014582143,0.0001285581,0.000087910805,0.00020751698],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020692869,0.0000683209,0.0003124748,0.000054746964,0.00013389913,3.081399e-7,0.00011770092,0.000030369747,0.72264236,0.00020231171,0.2677411,0.00867569],"study_design_scores_gemma":[0.00032975603,0.00012549682,0.011791263,0.000121235535,0.00012983069,0.000004347492,0.00013013184,0.0000793949,0.26648474,0.000050132505,0.720191,0.00056264905],"about_ca_topic_score_codex":0.00014000892,"about_ca_topic_score_gemma":0.0009749282,"teacher_disagreement_score":0.6626554,"about_ca_system_score_codex":0.00001567751,"about_ca_system_score_gemma":0.00005004544,"threshold_uncertainty_score":0.5742761},"labels":[],"label_agreement":null},{"id":"W4406364731","doi":"10.1002/9781683670438.mcm0075","title":"Antimicrobial Susceptibility Testing Systems","year":2023,"lang":"en","type":"other","venue":"ClinMicroNow","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health","funders":"","keywords":"Broth microdilution; Clinical microbiology; Computer science; Antimicrobial; Minimum inhibitory concentration; Biology; Microbiology","score_opus":0.035648749147891894,"score_gpt":0.28127873479356635,"score_spread":0.24562998564567445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406364731","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2336739,0.005486685,0.0019422953,0.00045719888,0.03676395,0.0065357396,0.0031367654,0.008425575,0.7035779],"genre_scores_gemma":[0.06718001,0.00015476088,0.0013118412,0.000111833826,0.00423201,0.000042994314,0.00094371155,0.0018165449,0.9242063],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981905,0.000114179384,0.00042498112,0.0008366402,0.00009344528,0.0003402606],"domain_scores_gemma":[0.9985353,0.000039407732,0.00031032017,0.0009095385,0.00010953215,0.00009591052],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00041688138,0.00030727824,0.00032960542,0.00009586021,0.000080957965,0.00011701934,0.0003330202,0.00058238866,0.0001547349],"category_scores_gemma":[0.0007995381,0.000333339,0.00013114087,0.00015764257,0.00012563117,0.0000020593247,0.00019287212,0.00017937632,0.0008111788],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008765295,0.000050225583,0.004976606,0.00016364867,0.000058698526,0.0000029939415,0.0000069906114,0.0000048339743,0.39310867,0.000007532072,0.60001373,0.0015972924],"study_design_scores_gemma":[0.00044406726,0.00007447616,0.00272293,0.00034570688,0.00006157742,0.000018169507,0.000034095578,0.00004487468,0.0049706083,0.0000047368444,0.9905596,0.00071917346],"about_ca_topic_score_codex":0.0006368161,"about_ca_topic_score_gemma":0.0014609771,"teacher_disagreement_score":0.39054585,"about_ca_system_score_codex":0.0000352858,"about_ca_system_score_gemma":0.00013194358,"threshold_uncertainty_score":0.9999668},"labels":[],"label_agreement":null},{"id":"W4406364734","doi":"10.1002/9781683670438.cmph0025","title":"Specimen Selection, Collection, and Transport for Anaerobic Culture","year":2023,"lang":"en","type":"other","venue":"ClinMicroNow","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Data collection; Anaerobic exercise; Health care; Clinical microbiology; Medical emergency; Medicine; Computer science; Operations management; Microbiology; Biology; Engineering","score_opus":0.013991715609933031,"score_gpt":0.26919450932287925,"score_spread":0.25520279371294624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406364734","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.29677275,0.02840277,0.05362998,0.0044807433,0.036561478,0.0326733,0.008293534,0.011199986,0.52798545],"genre_scores_gemma":[0.0031132358,0.00069821347,0.0025189456,0.00008109785,0.0012106851,0.00007520507,0.00080206466,0.00044721668,0.99105334],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99915653,0.000019472676,0.00018817563,0.00045237213,0.000035569243,0.00014786793],"domain_scores_gemma":[0.9995751,0.000007009908,0.00011091004,0.00018206122,0.00007325771,0.000051676496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011900347,0.00016335252,0.00016965106,0.000059839313,0.00009032887,0.000025762309,0.00007951513,0.00037108824,0.00015030023],"category_scores_gemma":[0.000051592437,0.00017148227,0.00007712932,0.00009731203,0.000051444953,0.0000014467482,0.000015843749,0.00007019548,0.000023068642],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023944665,0.00002443304,0.00153306,0.000067505454,0.00008799111,1.8063528e-7,0.00004135927,4.3806995e-7,0.14949761,0.000018491663,0.8481123,0.000592693],"study_design_scores_gemma":[0.00037072378,0.00009366855,0.0023054122,0.000032127136,0.00004796581,0.0000043914324,0.000029452063,0.000004389028,0.006417572,0.000022025652,0.99046206,0.00021021263],"about_ca_topic_score_codex":0.000093230476,"about_ca_topic_score_gemma":0.004629861,"teacher_disagreement_score":0.46306786,"about_ca_system_score_codex":0.00001723166,"about_ca_system_score_gemma":0.00006201202,"threshold_uncertainty_score":0.69928443},"labels":[],"label_agreement":null},{"id":"W4406395405","doi":"10.1016/j.ymed.2016.08.003","title":"10.1016/j.ymed.2016.08.003","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Nocardia; Mass spectrometry; Medicine; Identification (biology); Microbiology; Chromatography; Matrix-assisted laser desorption/ionization; Mycobacterium; Desorption; Biology; Bacteria; Pathology; Chemistry; Botany; Genetics; Organic chemistry","score_opus":0.006564960943657447,"score_gpt":0.19175237593906608,"score_spread":0.18518741499540864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406395405","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04349081,0.00004735187,0.000003345334,0.00020096144,0.0000043177615,0.00014784612,0.000017769764,0.000045498484,0.9560421],"genre_scores_gemma":[0.0048460127,5.538456e-7,0.00018331656,0.0000722906,0.00021539457,0.000012025849,0.00012888311,0.000017029493,0.9945245],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992665,0.000044187236,0.00016191698,0.00028001986,0.00007077804,0.00017660747],"domain_scores_gemma":[0.9994371,0.000008033648,0.000025631869,0.00037106048,0.00004895884,0.00010925111],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00014385051,0.0000997382,0.00008972159,0.000021937363,0.00006533733,0.000045131867,0.00016683104,0.00008238542,0.97563237],"category_scores_gemma":[0.00010768033,0.00010267741,0.00005149978,0.000075616554,0.000028445576,0.0000032686223,0.00004133961,0.000043449952,0.94759697],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008276339,0.00006346201,0.0000012496699,0.0000060894986,0.000016090044,8.211805e-7,0.000011138274,0.000010529418,0.3025926,4.72805e-7,0.28730205,0.40991277],"study_design_scores_gemma":[0.00014218272,0.00008896982,0.00015363275,0.0000060610228,0.000005955339,0.0000043070954,0.0000011480072,0.000020019595,0.012426079,0.000002202565,0.9870167,0.00013274777],"about_ca_topic_score_codex":0.000011532309,"about_ca_topic_score_gemma":5.5475897e-7,"teacher_disagreement_score":0.69971466,"about_ca_system_score_codex":0.000008845328,"about_ca_system_score_gemma":0.000032613905,"threshold_uncertainty_score":0.41870633},"labels":[],"label_agreement":null},{"id":"W4406426862","doi":"10.1016/s1166-8598(13)25999-5","title":"10.1016/s1166-8598(13)25999-5","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Identification (biology); Biology; Ecology","score_opus":0.0064418065134692086,"score_gpt":0.18921804709367143,"score_spread":0.18277624058020223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406426862","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.065312274,0.000037033748,0.000003302385,0.00019681701,0.0000038217445,0.00014682344,0.000017811712,0.000048924743,0.9342332],"genre_scores_gemma":[0.008292971,4.229063e-7,0.00016812872,0.000073200084,0.00022923987,0.000012963078,0.00014379437,0.000018225412,0.99106103],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99922377,0.000044768112,0.0001710364,0.00030040255,0.000076570905,0.00018345246],"domain_scores_gemma":[0.9994039,0.00000809091,0.000026592254,0.0003911812,0.000059467988,0.00011077777],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00014493828,0.00010666148,0.000095255375,0.000023680786,0.000070601905,0.000049967257,0.00017802515,0.000086765554,0.9745967],"category_scores_gemma":[0.000104157916,0.000112261616,0.000056902063,0.00008262677,0.000028647248,0.0000033920642,0.000046128516,0.000048181028,0.94131255],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011857421,0.00008240054,0.0000025026068,0.000008144126,0.000020443742,0.0000012315128,0.00001338944,0.000028667018,0.29258922,5.6558457e-7,0.24830657,0.4588283],"study_design_scores_gemma":[0.00014966923,0.00009885406,0.00029362066,0.000005064037,0.000006806687,0.0000052478617,0.0000010494634,0.00003812421,0.00825986,0.0000028893073,0.99099493,0.00014390527],"about_ca_topic_score_codex":0.000019367488,"about_ca_topic_score_gemma":0.000001449417,"teacher_disagreement_score":0.74268836,"about_ca_system_score_codex":0.000009498377,"about_ca_system_score_gemma":0.00002700221,"threshold_uncertainty_score":0.45778957},"labels":[],"label_agreement":null},{"id":"W4406557013","doi":"10.1016/s1877-7848(15)76092-2","title":"10.1016/s1877-7848(15)76092-2","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Philosophy; Microbiology; Biology","score_opus":0.006550952980476011,"score_gpt":0.19026829548739715,"score_spread":0.18371734250692115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406557013","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.05421248,0.000040488932,0.000003757841,0.00021152904,0.000003892536,0.00015335692,0.00001898558,0.000050959537,0.9453046],"genre_scores_gemma":[0.0071499622,3.81679e-7,0.00020960593,0.00007951862,0.0002302252,0.000012916761,0.00015048622,0.000018208591,0.9921487],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99922127,0.000044783457,0.00017154815,0.00030111047,0.0000766526,0.00018463176],"domain_scores_gemma":[0.9994042,0.000008102991,0.000026761822,0.00039063534,0.000059996135,0.00011030435],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00014524026,0.000106799744,0.000095492134,0.00002389134,0.000071902396,0.00005122497,0.00017983442,0.00008628324,0.97839737],"category_scores_gemma":[0.00010518982,0.00011245154,0.000056976718,0.00008480264,0.000028935381,0.0000035424384,0.000046250836,0.00004745214,0.94448394],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000113563874,0.00007692116,0.0000021859273,0.000007540321,0.000019122108,0.0000011274795,0.000011665249,0.000018721583,0.32248816,5.586452e-7,0.25644183,0.4208186],"study_design_scores_gemma":[0.00014594657,0.00010203558,0.00023798793,0.000005059808,0.0000067908777,0.0000050928775,0.0000010497256,0.00002982512,0.010618224,0.0000029279458,0.9887014,0.00014368574],"about_ca_topic_score_codex":0.000015052035,"about_ca_topic_score_gemma":0.0000011597114,"teacher_disagreement_score":0.7322596,"about_ca_system_score_codex":0.000009733696,"about_ca_system_score_gemma":0.000027520731,"threshold_uncertainty_score":0.45856407},"labels":[],"label_agreement":null},{"id":"W4406572547","doi":"10.1016/s2211-9698(11)56956-0","title":"10.1016/s2211-9698(11)56956-0","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Valuation (finance); Business","score_opus":0.006608572191763987,"score_gpt":0.19063928038357164,"score_spread":0.18403070819180767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406572547","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08329503,0.000031843167,0.0000037363177,0.00024120322,0.000004286559,0.00016039528,0.000019686562,0.00005315118,0.9161907],"genre_scores_gemma":[0.0075913197,3.197413e-7,0.00020623353,0.000070608796,0.00023127155,0.00001281119,0.00014893358,0.00001825266,0.99172026],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992229,0.000044664346,0.0001713913,0.00029977778,0.00007640323,0.00018490724],"domain_scores_gemma":[0.9994061,0.000007684445,0.000026609989,0.00038912433,0.000059485817,0.0001109895],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00014724139,0.00010658084,0.000095123265,0.000023882416,0.00007139218,0.00005089177,0.00017931836,0.00008672508,0.97506243],"category_scores_gemma":[0.000102674814,0.00011228809,0.000057627367,0.00008385804,0.0000282267,0.0000034873374,0.00004589971,0.000041564406,0.93262166],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095029856,0.000092944756,0.000004384206,0.000008955374,0.000019420604,0.0000013502532,0.0000136342005,0.00002283691,0.30888212,0.0000010381907,0.30743906,0.38341922],"study_design_scores_gemma":[0.00014664195,0.00008194095,0.0002812677,0.000004925254,0.0000069649823,0.0000050694334,0.0000011102768,0.00003312937,0.008783366,0.0000023861128,0.9905098,0.00014340389],"about_ca_topic_score_codex":0.000020599677,"about_ca_topic_score_gemma":0.0000019857914,"teacher_disagreement_score":0.6830707,"about_ca_system_score_codex":0.000009762839,"about_ca_system_score_gemma":0.000026942444,"threshold_uncertainty_score":0.45789757},"labels":[],"label_agreement":null},{"id":"W4406639192","doi":"10.1016/b978-1-4160-2450-7.50171-7","title":"10.1016/b978-1-4160-2450-7.50171-7","year":2000,"lang":"en","type":"book-chapter","venue":"Time to knit","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Microbiology; Biology","score_opus":0.01064668406201568,"score_gpt":0.19306331806532906,"score_spread":0.18241663400331337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406639192","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000048659018,0.00015279444,0.0000016577065,0.00009294238,0.000009988473,0.00029811234,0.00012704915,0.000062473744,0.9992063],"genre_scores_gemma":[0.000033777764,0.000001841512,0.000113002665,0.00007186705,0.0006545474,0.000014674283,0.0011031386,0.0000889935,0.9979181],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99852693,0.000028313563,0.0003733413,0.00065678946,0.00015995535,0.00025467965],"domain_scores_gemma":[0.9987378,0.000014948941,0.00012684618,0.00080743385,0.00013171603,0.00018123676],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016664929,0.0003369205,0.00028969714,0.00008126082,0.000090279085,0.000083172534,0.0003547012,0.00046755638,0.9805505],"category_scores_gemma":[0.00008681233,0.0003767485,0.0001874293,0.00002586768,0.000067771936,0.0000031097447,0.00014840084,0.00017973594,0.9598501],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017261207,0.000045476718,6.952936e-8,0.000033979646,0.0001111345,0.0000063917887,0.0000076498045,0.00000632525,0.034114286,0.0000350137,0.62896174,0.33650532],"study_design_scores_gemma":[0.00014908554,0.00014918456,0.000004955241,0.000043819124,0.000039571485,0.000010974512,2.5114872e-7,0.000004165788,0.0010269592,0.00006939783,0.99808055,0.00042109247],"about_ca_topic_score_codex":0.000008940519,"about_ca_topic_score_gemma":0.0000016119641,"teacher_disagreement_score":0.3691188,"about_ca_system_score_codex":0.000029662768,"about_ca_system_score_gemma":0.00008637354,"threshold_uncertainty_score":0.99986845},"labels":[],"label_agreement":null},{"id":"W4406656964","doi":"10.1016/b978-0-443-10303-2.50132-6","title":"10.1016/b978-0-443-10303-2.50132-6","year":2000,"lang":"en","type":"book-chapter","venue":"Time to knit","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Identification (biology); Computational biology; Biology; Microbiology; Ecology","score_opus":0.010402378445911931,"score_gpt":0.19246813732680199,"score_spread":0.18206575888089005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406656964","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000052932694,0.00015412667,0.0000017446456,0.00009691688,0.00001042092,0.00030520582,0.00012703995,0.000064035725,0.9991876],"genre_scores_gemma":[0.00003481765,0.0000016348621,0.00011337231,0.00007784236,0.0006749071,0.000015173355,0.0011452939,0.00009002727,0.9978469],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985141,0.000027600354,0.00037831362,0.00066029804,0.0001624305,0.0002572557],"domain_scores_gemma":[0.9987462,0.000014716527,0.00012537949,0.000802426,0.00012930245,0.00018194779],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016101821,0.00033987738,0.00029128965,0.00008294078,0.000088957524,0.000082807244,0.0003514143,0.00046400307,0.9811198],"category_scores_gemma":[0.000079774334,0.0003784591,0.00018738063,0.00002718792,0.00006735265,0.000003264333,0.00014862872,0.00017811274,0.9604684],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019488679,0.00005470578,8.814477e-8,0.000039345603,0.00012830264,0.0000069530565,0.000008823092,0.000007670669,0.03926159,0.000040946583,0.34592104,0.61433566],"study_design_scores_gemma":[0.0001475866,0.00015614498,0.000004813265,0.000043466436,0.0000389409,0.000010871876,2.8763233e-7,0.00000446402,0.0009954992,0.00006657207,0.9981062,0.00042515463],"about_ca_topic_score_codex":0.000010246259,"about_ca_topic_score_gemma":0.0000017418372,"teacher_disagreement_score":0.6521852,"about_ca_system_score_codex":0.00002922026,"about_ca_system_score_gemma":0.000086309556,"threshold_uncertainty_score":0.9998667},"labels":[],"label_agreement":null},{"id":"W4406800610","doi":"10.1128/cmr.00146-22","title":"Companions in antimicrobial resistance: examining transmission of common antimicrobial-resistant organisms between people and their dogs, cats, and horses","year":2025,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Antibiotic resistance; Antimicrobial; Transmission (telecommunications); Context (archaeology); Biology; Veterinary medicine; Companion animal; Microbiology; Medicine; Antibiotics","score_opus":0.0791698705690126,"score_gpt":0.3710924945452956,"score_spread":0.291922623976283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406800610","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.051612373,0.94609994,0.000070232054,0.0000651457,0.00024790206,0.0013329143,0.0005212199,0.000014577451,0.00003567543],"genre_scores_gemma":[0.007876651,0.989003,0.0007494864,0.00010708948,0.00012818843,0.000023897233,0.0019024668,0.00003786265,0.00017133288],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9936302,0.0020758726,0.0028237486,0.0011101406,0.000015922185,0.00034416877],"domain_scores_gemma":[0.99742526,0.0006876858,0.001008002,0.00068032235,0.00008045279,0.00011827944],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0020252755,0.00056074595,0.0037583522,0.00014809376,0.00012919631,0.000039070204,0.00044897955,0.0010517519,0.000012810635],"category_scores_gemma":[0.00076448225,0.00043570256,0.00040925742,0.0003190392,0.0005328777,0.0000068599634,0.00038245769,0.0005483421,0.0000041955063],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008681735,0.00032232422,0.0055825277,0.04570955,0.00025326526,0.000001330062,0.00015515123,5.6110842e-8,0.45020494,0.000021696736,0.0049236626,0.49273866],"study_design_scores_gemma":[0.000502189,0.00015503497,0.0020605563,0.017656604,0.00038063005,0.00002103476,0.000013291396,1.2257215e-7,0.00068635336,0.000008945615,0.9780417,0.0004735545],"about_ca_topic_score_codex":0.000036344863,"about_ca_topic_score_gemma":0.0005504403,"teacher_disagreement_score":0.973118,"about_ca_system_score_codex":0.000027302076,"about_ca_system_score_gemma":0.00031811363,"threshold_uncertainty_score":0.9998095},"labels":[],"label_agreement":null},{"id":"W4406946271","doi":"10.1093/ofid/ofae631.2244","title":"P-2088. Correlation of pediatric blood culture transport time and time-to-positivity since microbiology service centralization","year":2025,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Medicine; Blood culture; Clinical microbiology; Microbiology; Family medicine; Intensive care medicine; Antibiotics; Biology","score_opus":0.003694285335861679,"score_gpt":0.22963817595513902,"score_spread":0.22594389061927733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406946271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99649197,0.00014503354,0.00044942892,0.00022662398,0.000080251164,0.0005035118,0.00024800643,0.000022728276,0.0018324688],"genre_scores_gemma":[0.99663293,0.000029690305,0.00005967479,0.0004343521,0.000030938707,0.000014840467,0.0013592399,0.000008152492,0.0014301906],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992823,0.00007653626,0.0001962523,0.00028807137,0.000030163683,0.0001267023],"domain_scores_gemma":[0.9994927,0.00001471906,0.00009224999,0.0001813204,0.00016092243,0.000058104688],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008046419,0.00010533405,0.00014111755,0.00004343605,0.0001149719,0.000041840733,0.00012404696,0.00010314374,0.00006566239],"category_scores_gemma":[0.000092356946,0.000109199056,0.000038056205,0.00021904906,0.000026491527,0.0000161165,0.0001041709,0.000032882657,0.000021767026],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007928013,0.00026897882,0.31479022,0.00005853137,0.00004865023,3.6987186e-7,0.00003519137,0.00011934913,0.6826244,0.00013338693,0.0015098742,0.0003317813],"study_design_scores_gemma":[0.0028709855,0.00063106784,0.9087154,0.00010640351,0.0008682761,0.000024208766,0.000048988877,0.0005660908,0.07651385,0.0003844634,0.008589787,0.00068043603],"about_ca_topic_score_codex":0.00009613537,"about_ca_topic_score_gemma":0.0001285604,"teacher_disagreement_score":0.6061106,"about_ca_system_score_codex":0.000010079763,"about_ca_system_score_gemma":0.00007550194,"threshold_uncertainty_score":0.44530082},"labels":[],"label_agreement":null},{"id":"W4406956138","doi":"10.1093/ofid/ofae631.1073","title":"P-882. Comparison of Epidemiology, Risk factors, Antimicrobial susceptibility and Outcome of Anaerobic Bacteremia: 2011-2013 and 2020- 2022","year":2025,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Bacteremia; Epidemiology; Antimicrobial; Anaerobic exercise; Outcome (game theory); Internal medicine; Intensive care medicine; Microbiology; Antibiotics; Physical therapy; Biology","score_opus":0.021626806284058324,"score_gpt":0.3296798922605111,"score_spread":0.30805308597645276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406956138","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976066,0.00079214224,0.00013524722,0.00018765633,0.00022350161,0.00045293808,0.00041270675,0.000013073953,0.00017614763],"genre_scores_gemma":[0.9988062,0.0003825992,0.00017161487,0.00009151192,0.000017871345,0.000010287142,0.0003487965,0.0000102302065,0.00016092953],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982066,0.00034671483,0.00068748195,0.0005006651,0.000044995984,0.00021355553],"domain_scores_gemma":[0.99867153,0.00018753854,0.0004284136,0.00047255412,0.0001406026,0.00009935801],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048154002,0.00018330409,0.00054283836,0.0000569304,0.00016365729,0.000040246625,0.00022215836,0.00016901885,0.000101894846],"category_scores_gemma":[0.0012619734,0.00017116083,0.00010411754,0.00009572282,0.00035034533,0.0000204207,0.00058031385,0.00011374655,0.00000146748],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080309954,0.00024490917,0.9188518,0.000109800036,0.00007708321,8.441352e-8,0.000020478077,0.000007835755,0.073929064,0.00012282991,0.005468011,0.001087784],"study_design_scores_gemma":[0.00062204007,0.00020147403,0.98752624,0.000026354004,0.00010672954,0.0000014329187,0.00015336783,0.000043752247,0.009905193,0.0003845425,0.0008696878,0.000159215],"about_ca_topic_score_codex":0.0026116678,"about_ca_topic_score_gemma":0.0020900997,"teacher_disagreement_score":0.0686744,"about_ca_system_score_codex":0.000017076483,"about_ca_system_score_gemma":0.000063941356,"threshold_uncertainty_score":0.69797367},"labels":[],"label_agreement":null},{"id":"W4406969315","doi":"10.1093/ofid/ofaf063","title":"Association of Daily Body Temperature, White Blood Cell Count, and C-reactive Protein With Mortality and Persistent Bacteremia in Patients With <i>Staphylococcus Aureus</i> Bacteremia: A Post Hoc Analysis of the CAMERA2 Randomized Clinical Trial","year":2025,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre","funders":"National Medical Research Council","keywords":"Medicine; Bacteremia; White blood cell; Staphylococcus aureus; Post-hoc analysis; C-reactive protein; Internal medicine; Methicillin-resistant Staphylococcus aureus; Microbiology; Antibiotics; Inflammation; Bacteria","score_opus":0.0056749594660612775,"score_gpt":0.255567089885113,"score_spread":0.24989213041905173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406969315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971924,0.000054184897,0.000003010877,0.00007106523,0.00004918154,0.0020952318,0.0002954883,0.0000043396844,0.00023514449],"genre_scores_gemma":[0.9993822,0.000013553248,0.000014084044,0.00009842168,0.000011075895,0.00009541138,0.0002515295,0.000008254554,0.00012544755],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99828094,0.0005375448,0.0005038588,0.00038915747,0.00015041849,0.00013809589],"domain_scores_gemma":[0.99849844,0.00011314486,0.00058437296,0.0003467081,0.00040185437,0.00005546472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059569377,0.00015911278,0.00058228493,0.00007704538,0.00009297614,0.000107863256,0.00014461529,0.00013643323,0.0000072770877],"category_scores_gemma":[0.00058348756,0.00010600539,0.00018493122,0.0003295592,0.0001652484,0.000025881563,0.00015776553,0.00011750067,4.964239e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.053552005,0.0008684676,0.92929286,0.000044037453,0.0015829713,1.5782292e-7,0.000041479896,0.0000054342213,0.014539223,0.0000070184624,0.000031468753,0.000034876848],"study_design_scores_gemma":[0.108789146,0.000686951,0.88594747,0.0000566435,0.0023371791,7.492461e-8,0.000105869614,0.000008185646,0.0019288368,0.000006834345,0.0000137085735,0.00011907985],"about_ca_topic_score_codex":0.0004915287,"about_ca_topic_score_gemma":0.0026692885,"teacher_disagreement_score":0.05523714,"about_ca_system_score_codex":0.00003382683,"about_ca_system_score_gemma":0.00021183534,"threshold_uncertainty_score":0.43227744},"labels":[],"label_agreement":null},{"id":"W4407293701","doi":"10.1007/s10096-025-05054-3","title":"Evaluation of a four-day incubation protocol for blood cultures: a quality improvement project","year":2025,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Medical microbiology; Incubation; Incubation period; Medicine; Protocol (science); Quality management; Blood culture; Biology; Immunology; Operations management; Microbiology; Pathology; Engineering; Antibiotics; Alternative medicine","score_opus":0.09266698260360452,"score_gpt":0.4534462384430932,"score_spread":0.36077925583948867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407293701","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9781371,0.000050087216,0.0029223023,0.0000855016,0.00045204407,0.017782418,0.00006630136,0.000011793936,0.00049245683],"genre_scores_gemma":[0.99696076,0.0000083522245,0.00028075388,0.00020882497,0.00037838155,0.0020224056,0.00006400705,0.000011646481,0.00006486831],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9947808,0.003134872,0.0016020029,0.0002693079,0.00008685301,0.00012620393],"domain_scores_gemma":[0.99624443,0.00021681126,0.0013122245,0.00024835786,0.0019269567,0.000051198727],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.008698211,0.00012682744,0.0003266049,0.00007825877,0.00007778521,0.000025810505,0.0001918756,0.0000855316,0.000016693248],"category_scores_gemma":[0.012286916,0.000101892976,0.00038439053,0.000094162766,0.0001491482,0.000009150235,0.00007498758,0.0001187717,0.0000011989694],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070405455,0.0014576743,0.044779982,0.0001677702,0.00057959085,6.801603e-7,0.000038830745,0.000032898446,0.9096458,0.000049918825,0.0026393381,0.039903443],"study_design_scores_gemma":[0.064714886,0.02153667,0.64555544,0.0009419339,0.004902144,0.00009214969,0.00037992516,0.00013628816,0.15575524,0.0034399105,0.101408616,0.0011367865],"about_ca_topic_score_codex":0.0000034354625,"about_ca_topic_score_gemma":0.000016417158,"teacher_disagreement_score":0.7538906,"about_ca_system_score_codex":0.000020757441,"about_ca_system_score_gemma":0.00053960294,"threshold_uncertainty_score":0.996033},"labels":[],"label_agreement":null},{"id":"W4407558201","doi":"10.1017/ice.2025.20","title":"Chatting new territory: large language models for infection surveillance from pilot to deployment","year":2025,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"","keywords":"Software deployment; Identification (biology); Medicine; Health care; Medical emergency; Computer science; Computer security; Political science; Biology; Software engineering","score_opus":0.020790525947794642,"score_gpt":0.3071956904737791,"score_spread":0.28640516452598447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407558201","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.67693996,0.0003800192,0.31890726,0.002287382,0.00087026047,0.0004280825,0.00005006339,0.00004737852,0.00008959023],"genre_scores_gemma":[0.9957606,0.00007351042,0.00071852625,0.0022109193,0.0006188686,0.00011251039,0.00015790739,0.000011743976,0.00033537045],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987343,0.00019654846,0.0003448587,0.00044988186,0.000027298605,0.00024712933],"domain_scores_gemma":[0.9992608,0.0002419835,0.00011723237,0.00020291748,0.00008084224,0.00009621363],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007419652,0.0001392914,0.00028411509,0.000058817906,0.00014541154,0.000025871483,0.000051639516,0.0001384141,0.000007646608],"category_scores_gemma":[0.0017150696,0.00013964788,0.000079880585,0.000054864322,0.00002547101,0.000011582941,0.0000534461,0.00007280975,0.0000039056968],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038572395,0.00020203448,0.77004945,0.000046746132,0.000194945,3.013167e-7,0.00014998799,0.001039334,0.18276653,0.0026334082,0.008713695,0.03381785],"study_design_scores_gemma":[0.0034761315,0.0012352809,0.924633,0.000040657163,0.00004811586,0.000001786894,0.000032777178,0.013349938,0.0020261898,0.0049274536,0.049840957,0.00038770938],"about_ca_topic_score_codex":0.004710177,"about_ca_topic_score_gemma":0.003266314,"teacher_disagreement_score":0.3188207,"about_ca_system_score_codex":0.000027724911,"about_ca_system_score_gemma":0.000041901796,"threshold_uncertainty_score":0.71204096},"labels":[],"label_agreement":null},{"id":"W4407599189","doi":"10.1016/j.diagmicrobio.2025.116749","title":"Detection of bacterial pathogens directly from synovial fluids using digital PCR: A proof of concept study","year":2025,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital","funders":"","keywords":"Proof of concept; Synovial fluid; Microbiology; Computational biology; Biology; Medicine; Pathology; Computer science","score_opus":0.007630075512413952,"score_gpt":0.23533432885305677,"score_spread":0.22770425334064281,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407599189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965326,0.0004076995,0.0014946504,0.0000054438547,0.00046329477,0.00042809593,0.0006278187,0.00001255628,0.000027800384],"genre_scores_gemma":[0.9993787,0.000012920676,0.000015727097,0.00002261762,0.00008796934,0.000017373144,0.0004418883,0.00000773063,0.00001511382],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905056,0.000137983,0.0003368845,0.0003313239,0.00002340552,0.0001198386],"domain_scores_gemma":[0.99929696,0.0001589621,0.00013069504,0.00022532974,0.00013385214,0.000054203665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009160486,0.0001304843,0.00021921529,0.00005988317,0.000077131066,0.000021474007,0.00007058287,0.00011495147,0.000023537497],"category_scores_gemma":[0.0017591378,0.00013155022,0.000072378854,0.000090938,0.00020391906,0.000008653755,0.00010106995,0.00005050067,4.2244335e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019302804,0.00048500038,0.12787624,0.00002746901,0.00009315795,0.0000013720017,0.000073645824,0.000009401907,0.8692112,0.0000065328786,0.000020681811,0.0020022658],"study_design_scores_gemma":[0.0019466061,0.00069360476,0.12232968,0.00007343477,0.00028913748,0.0000049776363,0.0001754626,0.0000644941,0.87373704,0.00012036595,0.00032061923,0.00024457887],"about_ca_topic_score_codex":0.000102490114,"about_ca_topic_score_gemma":0.000088291774,"teacher_disagreement_score":0.005546563,"about_ca_system_score_codex":0.000012120714,"about_ca_system_score_gemma":0.00010085792,"threshold_uncertainty_score":0.5364462},"labels":[],"label_agreement":null},{"id":"W4408696119","doi":"10.1038/s41467-025-57678-w","title":"Publisher Correction: Next-generation rapid phenotypic antimicrobial susceptibility testing","year":2025,"lang":"en","type":"erratum","venue":"Nature Communications","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; University of Toronto","funders":"","keywords":"Phenotype; Antimicrobial; Computational biology; Biology; Microbiology; Genetics; Gene","score_opus":0.05467789893361443,"score_gpt":0.2994905695793426,"score_spread":0.24481267064572818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408696119","genre_codex":"editorial","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011488864,0.03944778,0.0012919435,0.01687636,0.4664301,0.0045062574,0.0005412533,0.0010937045,0.45832375],"genre_scores_gemma":[0.45373282,0.0026232968,0.013594253,0.0031854962,0.008284348,0.00022395578,0.0685154,0.00015454083,0.44968587],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972646,0.0005648299,0.0007053009,0.0009179387,0.00021258903,0.0003347131],"domain_scores_gemma":[0.9935926,0.00014460838,0.00043890756,0.0043208716,0.0014012111,0.00010176413],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0007357709,0.00041467007,0.00037527722,0.00018174622,0.0008204875,0.0005975578,0.0018230298,0.002169375,0.00007798853],"category_scores_gemma":[0.0055801584,0.00046938955,0.00022973695,0.00066509185,0.0002358391,0.00003619357,0.0009409589,0.0025699013,0.00002388995],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011446277,0.00016068404,0.0006054195,0.000051004157,0.00006145625,1.6726909e-7,0.00002805302,0.0000035011274,0.09470901,0.00006208668,0.89750004,0.0068071308],"study_design_scores_gemma":[0.00023814688,0.00005337949,0.0034271595,0.00012265488,0.000104699044,0.0000087664,0.000034295834,0.00092278,0.00085606496,0.000036043093,0.9937057,0.00049030205],"about_ca_topic_score_codex":0.00011297027,"about_ca_topic_score_gemma":0.004258033,"teacher_disagreement_score":0.45814574,"about_ca_system_score_codex":0.00013986214,"about_ca_system_score_gemma":0.00097116875,"threshold_uncertainty_score":0.99977577},"labels":[],"label_agreement":null},{"id":"W4408822965","doi":"10.1017/cts.2024.1028","title":"420 Harmonization of quality indicators in Clinical Microbiology Laboratories","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical and Translational Science","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Harmonization; Clinical microbiology; Quality (philosophy); Microbiology; Medical physics; Medicine; Biology; Physics","score_opus":0.047610636312359164,"score_gpt":0.4298107881303378,"score_spread":0.3822001518179786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408822965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99708396,0.00016112467,0.0012470168,0.00095747615,0.00037285054,0.000040581574,0.0000079675465,9.392841e-7,0.00012806764],"genre_scores_gemma":[0.9980222,0.000116775176,0.0015892576,0.00016121646,0.00007970573,2.717027e-7,0.0000050917783,0.0000011541886,0.000024319448],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981906,0.0002015106,0.0012974798,0.0001594099,0.00008260044,0.00006841373],"domain_scores_gemma":[0.9989365,0.000199963,0.0003853815,0.000080039885,0.00034534076,0.00005281143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0047920956,0.000043177184,0.00020322028,0.00011986,0.000041176183,0.000014514281,0.00015147123,0.00009914153,0.00000617807],"category_scores_gemma":[0.0026339209,0.000035359586,0.00006786913,0.00049265387,0.0007576616,0.0000160393,0.000024354926,0.00012250288,1.9612388e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010974893,0.000103634906,0.879147,0.000009137399,0.00000890764,1.5567247e-7,0.000019140793,0.0000054644593,0.10942124,0.0029885117,0.00001734308,0.008169698],"study_design_scores_gemma":[0.000537658,0.00007959346,0.99009806,0.00001834333,0.0000063469747,0.0000015635243,0.00001524257,0.000016810898,0.0061535817,0.0010843631,0.00195382,0.000034603094],"about_ca_topic_score_codex":0.000005329213,"about_ca_topic_score_gemma":0.000039505514,"teacher_disagreement_score":0.11095106,"about_ca_system_score_codex":0.0000019352444,"about_ca_system_score_gemma":0.00053549587,"threshold_uncertainty_score":0.31532395},"labels":[],"label_agreement":null},{"id":"W4408885208","doi":"10.1093/jacamr/dlaf044","title":"Distribution and prevalence of fungemia: a five-year retrospective multicentric survey in Venetian region, Italy","year":2025,"lang":"en","type":"article","venue":"JAC-Antimicrobial Resistance","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Psychiatric Association","keywords":"Corpus albicans; Fluconazole; Candida albicans; Amphotericin B; Medicine; Blood culture; Fungemia; Candida parapsilosis; Antifungal; Veterinary medicine; Microbiology; Internal medicine; Biology; Antibiotics","score_opus":0.010003965361138362,"score_gpt":0.24665115733582013,"score_spread":0.23664719197468176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408885208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99822044,0.00040717865,0.00055663305,0.0001364389,0.00012324004,0.00023432623,0.00019906269,0.000007862559,0.00011478521],"genre_scores_gemma":[0.9966934,0.00040629474,0.00026466703,0.000037036498,0.000023093286,0.0000057409134,0.00016103928,0.0000068375166,0.0024019212],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988867,0.0001680788,0.0003049371,0.00041175974,0.00006363009,0.0001648767],"domain_scores_gemma":[0.9992554,0.000042512493,0.00014052638,0.00031129323,0.00021936795,0.000030867828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033884967,0.00010683364,0.00016702923,0.000047341404,0.00005636626,0.000027197511,0.00014151503,0.00012803395,0.0000042149118],"category_scores_gemma":[0.0014690035,0.000120300676,0.000040177667,0.00030544403,0.00012827656,0.0000075217336,0.00007696982,0.0000913151,0.000001221863],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033512703,0.00006681513,0.5889722,0.00026606084,0.000013858689,0.0000011734736,0.000039278937,0.000004603202,0.40709493,0.00010951642,0.00301204,0.00008438578],"study_design_scores_gemma":[0.00047159047,0.000020152995,0.9477033,0.00015303047,0.000012431514,7.646099e-7,0.000011869058,0.000009969995,0.051098563,0.000027950817,0.00039153427,0.000098811084],"about_ca_topic_score_codex":0.00018829215,"about_ca_topic_score_gemma":0.0012762197,"teacher_disagreement_score":0.3587311,"about_ca_system_score_codex":0.000054586955,"about_ca_system_score_gemma":0.00008182068,"threshold_uncertainty_score":0.49057195},"labels":[],"label_agreement":null},{"id":"W4409114357","doi":"10.1136/bmjoq-2024-003243","title":"Increasing evidence-based care practices for patients with <i>Staphylococcus aureus</i> bacteraemia through required infectious diseases consultation in a tertiary care hospital: a quality improvement initiative","year":2025,"lang":"en","type":"article","venue":"BMJ Open Quality","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kingston Health Sciences Centre; Queen's University","funders":"","keywords":"Medicine; Infectious disease (medical specialty); Blood culture; Psychological intervention; Health care; Bacteremia; Staphylococcus aureus; Emergency medicine; Mortality rate; Disease; Intensive care medicine; Antibiotics; Internal medicine; Family medicine; Nursing","score_opus":0.052741275968805644,"score_gpt":0.4100274770642665,"score_spread":0.3572862010954609,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409114357","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916761,0.00020725628,0.000684378,0.00042276713,0.0001713364,0.006183114,0.0004520545,0.000029962972,0.00017306399],"genre_scores_gemma":[0.9936923,0.000009318594,0.0013186876,0.0011267137,0.00005202338,0.0016038379,0.0021637916,0.000017583696,0.000015740368],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99698347,0.0010659767,0.0007654136,0.0007395114,0.00019923836,0.00024638415],"domain_scores_gemma":[0.99625766,0.0006663798,0.0011564695,0.0006144863,0.0012415118,0.00006351373],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0009421142,0.00023685744,0.00032527006,0.00004887699,0.00022776978,0.00031619915,0.00031864262,0.00014077398,0.0000053927142],"category_scores_gemma":[0.012406271,0.00022167865,0.00008719318,0.00021276984,0.00010612971,0.00014530912,0.00021582247,0.0000986577,8.6734576e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021718268,0.0005916902,0.9388339,0.0010888452,0.00007519339,6.842475e-7,0.002709254,0.000011304562,0.04459435,0.00006314495,0.00009755882,0.009762241],"study_design_scores_gemma":[0.0054401904,0.0004984208,0.96936107,0.00062502734,0.00007313671,7.473261e-8,0.0069437753,0.000009415945,0.015919028,0.00011639371,0.0005647542,0.00044873683],"about_ca_topic_score_codex":0.003973405,"about_ca_topic_score_gemma":0.0026593518,"teacher_disagreement_score":0.030527141,"about_ca_system_score_codex":0.00021867077,"about_ca_system_score_gemma":0.00082832266,"threshold_uncertainty_score":0.9959127},"labels":[],"label_agreement":null},{"id":"W4409183502","doi":"10.1186/s12941-025-00787-7","title":"An analysis of the value-added of antibiogram subgroup stratification","year":2025,"lang":"en","type":"article","venue":"Annals of Clinical Microbiology and Antimicrobials","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sinai Health System","funders":"","keywords":"Antibiogram; Medicine; Intensive care unit; Vancomycin; Stratification (seeds); Antibiotics; Internal medicine; Microbiology; Antibiotic resistance; Biology; Staphylococcus aureus; Bacteria","score_opus":0.0551203748418236,"score_gpt":0.40772742681486845,"score_spread":0.35260705197304487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409183502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985046,0.00015081781,0.000249752,0.00047595854,0.00017898883,0.00016332176,0.00018928692,0.0000043560426,0.00008292774],"genre_scores_gemma":[0.9984945,0.00029796394,0.00036802414,0.00045385587,0.00002415328,9.3289833e-7,0.00027619704,0.0000042157167,0.00008015877],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977528,0.0005526636,0.0011941273,0.00035161956,0.000023621033,0.00012520571],"domain_scores_gemma":[0.9982122,0.00014878552,0.00068369607,0.0005809391,0.00034435283,0.000030031006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015058967,0.000108168584,0.00056482595,0.000107974854,0.000054722157,0.000008896673,0.0003090763,0.00029468478,0.000015904485],"category_scores_gemma":[0.00070483773,0.000084005835,0.00036946757,0.00039261754,0.00068135455,0.0000062884146,0.00008987172,0.00008037302,2.9108645e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000097166274,0.00027978513,0.14735337,0.00003967186,0.00042830914,2.3084949e-8,0.000016745378,0.000018229499,0.8497455,0.0006837303,0.0003251225,0.0010123283],"study_design_scores_gemma":[0.0001745793,0.00010766021,0.34285313,0.00002709687,0.00020395128,4.385026e-7,0.000023758956,0.000027641176,0.6560925,0.0000804169,0.00035242926,0.00005634595],"about_ca_topic_score_codex":0.000055393022,"about_ca_topic_score_gemma":0.00007966557,"teacher_disagreement_score":0.19549978,"about_ca_system_score_codex":6.176018e-7,"about_ca_system_score_gemma":0.000082549705,"threshold_uncertainty_score":0.34256586},"labels":[],"label_agreement":null},{"id":"W4409255906","doi":"10.1007/978-1-0716-4378-5_8","title":"Identifying Wheat Rusts Using MALDI-TOF Mass Spectrometry","year":2025,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Canadian International Grains Institute; University of British Columbia; Agriculture and Agri-Food Canada; University of Manitoba","funders":"","keywords":"Mass spectrometry; MALDI imaging; Chromatography; Matrix-assisted laser desorption/ionization; Chemistry","score_opus":0.04023289418933291,"score_gpt":0.4265420816812362,"score_spread":0.3863091874919033,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409255906","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.32482925,0.00071789854,0.67260796,0.00008554249,0.00054793,0.00015912461,0.0000042930646,0.000019180468,0.0010288345],"genre_scores_gemma":[0.19136001,0.000046442718,0.80757415,0.00042157058,0.000073858086,0.00001788344,0.00005611122,0.00002169547,0.00042828303],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972749,0.0010935052,0.00047692202,0.0006967257,0.000059253205,0.00039873316],"domain_scores_gemma":[0.9990602,0.00006072003,0.00010670033,0.0006321088,0.00008385594,0.000056379216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014566665,0.0002114508,0.00030124057,0.00031506398,0.00008524551,0.000052526957,0.0003545061,0.00035047779,0.00005572343],"category_scores_gemma":[0.0010060853,0.00023128363,0.00013722052,0.0005121193,0.00013029069,0.000004741145,0.0002370709,0.00020815387,0.000005069919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027858317,0.000035551853,0.011894386,0.00003244877,0.00004177224,0.000006097731,0.000014636413,0.000026980966,0.98291034,0.0020761546,0.000020984447,0.0029127973],"study_design_scores_gemma":[0.00044506293,0.000050954677,0.0033103547,0.00003494993,0.000025898242,0.000011714469,0.00007728783,0.00043247838,0.98490834,0.0085227955,0.0019297135,0.00025047504],"about_ca_topic_score_codex":0.00006538081,"about_ca_topic_score_gemma":0.000022019049,"teacher_disagreement_score":0.13496621,"about_ca_system_score_codex":0.00006599288,"about_ca_system_score_gemma":0.00009625815,"threshold_uncertainty_score":0.9431473},"labels":[],"label_agreement":null},{"id":"W4409333302","doi":"10.1128/spectrum.02873-24","title":"Still not sterile: viability-based assessment of the skin microbiome following pre-surgical application of a broad-spectrum antiseptic reveals transient pathogen enrichment and long-term recovery","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Bioburden; Antiseptic; Microbiome; Microbiology; Biology; Propidium monoazide; Medicine; Surgery; Bioinformatics; Pathology; Real-time polymerase chain reaction","score_opus":0.005719507180440573,"score_gpt":0.2628683793901904,"score_spread":0.25714887220974986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409333302","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99258626,0.00019323951,0.005112055,0.0006237025,0.00032637583,0.00090309227,0.00019571447,0.0000135616365,0.000046022367],"genre_scores_gemma":[0.998689,0.000024065721,0.0005645245,0.00015080941,0.000034680994,0.000041779396,0.00031765626,0.000013497315,0.00016397398],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980409,0.00031722584,0.00066564913,0.0006238215,0.000059211055,0.0002931793],"domain_scores_gemma":[0.9988546,0.000063133215,0.00028975523,0.00070109125,0.000051133586,0.000040318155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006063325,0.00021435528,0.0003840418,0.000087683635,0.0000806623,0.000020397641,0.0003014437,0.00022831045,0.000020208923],"category_scores_gemma":[0.00004050349,0.00018180773,0.00025156117,0.00021809363,0.00025237576,0.0000059498834,0.00018087849,0.00012174286,7.687335e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015361377,0.00022201768,0.0684032,0.00017526242,0.00009349481,8.6302117e-7,0.000038489474,0.000020294261,0.93031174,0.000060770773,0.00002099999,0.0004992531],"study_design_scores_gemma":[0.0009366698,0.00024678544,0.40690503,0.000071129776,0.00007842994,0.000012587465,0.00001029602,0.00004509373,0.590802,0.000056476998,0.0006751874,0.00016030636],"about_ca_topic_score_codex":0.0000302023,"about_ca_topic_score_gemma":0.00010457041,"teacher_disagreement_score":0.33950976,"about_ca_system_score_codex":0.000067081426,"about_ca_system_score_gemma":0.00014202119,"threshold_uncertainty_score":0.7413904},"labels":[],"label_agreement":null},{"id":"W4409411588","doi":"10.1128/aac.01082-24","title":"Genomics for antimicrobial resistance—progress and future directions","year":2025,"lang":"en","type":"review","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Health and Medical Research Council","keywords":"Genomics; Data sharing; Interoperability; Data science; Workflow; Standardization; Public health; Computer science; Medicine; Biology; World Wide Web; Genome; Genetics","score_opus":0.017848470047819278,"score_gpt":0.30348306683991855,"score_spread":0.2856345967920993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409411588","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003719118,0.99177796,0.00007531531,0.0011487039,0.0010096788,0.0014304197,0.0006580875,0.00003964468,0.00014107031],"genre_scores_gemma":[0.000036358357,0.9926161,0.0014572354,0.0009894314,0.0010615868,0.000050182036,0.0009716308,0.000053142077,0.002764339],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985457,0.000058818936,0.00040837994,0.0006944314,0.000039816878,0.00025287527],"domain_scores_gemma":[0.9992808,0.000022020864,0.00021289049,0.00033142377,0.00008383887,0.00006902414],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001426574,0.0003635014,0.00066051784,0.00007977516,0.0002903086,0.00018013548,0.00017707064,0.00042974486,0.000012614492],"category_scores_gemma":[0.000017760218,0.00034117638,0.00025689372,0.00011208427,0.00013383891,0.0000058537516,0.00008671158,0.00011314649,0.0000011793855],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007035752,0.000105475076,0.00005095095,0.009747249,0.00027440223,7.0727106e-7,0.00006472518,1.407681e-8,0.0016341102,0.000045302906,0.06292325,0.92508346],"study_design_scores_gemma":[0.00047066435,0.000025344525,0.00007130364,0.0009986177,0.00018226974,0.000011749602,0.000007719884,5.1930294e-7,0.00023589053,0.000007220938,0.9976512,0.00033748234],"about_ca_topic_score_codex":0.0000048045026,"about_ca_topic_score_gemma":0.000031866617,"teacher_disagreement_score":0.93472797,"about_ca_system_score_codex":0.000021194674,"about_ca_system_score_gemma":0.00014274564,"threshold_uncertainty_score":0.99990404},"labels":[],"label_agreement":null},{"id":"W4409449582","doi":"10.1007/s43678-025-00908-3","title":"Management of a positive blood culture in the pediatric emergency department: a multicenter case-based survey","year":2025,"lang":"en","type":"article","venue":"Canadian Journal of Emergency Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; McGill University","funders":"","keywords":"Medicine; Emergency department; Multicenter study; Medical emergency; Blood culture; Emergency medicine; Family medicine; Internal medicine; Nursing; Randomized controlled trial","score_opus":0.037096926542176556,"score_gpt":0.3228344325005791,"score_spread":0.2857375059584025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409449582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941842,0.0024797493,0.0001895671,0.00046729005,0.0016238797,0.0002181484,0.00004555932,8.183966e-7,0.00079082063],"genre_scores_gemma":[0.99875844,0.00049350853,0.000080478596,0.00007018008,0.00016927383,0.000004741815,0.00006565505,0.0000053139497,0.0003524092],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998723,0.00022854374,0.0006435825,0.0001375799,0.000103266946,0.0001640619],"domain_scores_gemma":[0.9990814,0.000015174394,0.00023347346,0.00020830666,0.0003455975,0.0001160975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090714125,0.00010236352,0.00015125383,0.00015901081,0.00006520302,0.0000032025744,0.0002323883,0.000058757283,0.0002627897],"category_scores_gemma":[0.0003326591,0.00007343765,0.00007683213,0.0004270936,0.000034366472,0.0000043847185,0.000010315607,0.00010337206,5.827227e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011072795,0.00022105065,0.9597588,0.00025040258,0.000263078,0.00056365604,0.0010879034,0.000032016353,0.011677879,0.00012524473,0.025539126,0.00037009714],"study_design_scores_gemma":[0.002154361,0.00053918344,0.98817444,0.00017098828,0.00048620356,0.000061502666,0.001939567,0.000029736711,0.0011740872,0.00006636205,0.0050145495,0.00018904525],"about_ca_topic_score_codex":0.00293614,"about_ca_topic_score_gemma":0.03875397,"teacher_disagreement_score":0.03581783,"about_ca_system_score_codex":0.000018465073,"about_ca_system_score_gemma":0.00018701892,"threshold_uncertainty_score":0.9787863},"labels":[],"label_agreement":null},{"id":"W4409571992","doi":"10.1016/j.cmi.2025.04.012","title":"Revisiting bacteriology diagnostics: how to make them globally available and accessible","year":2025,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Bacteriology; Data science; Medicine; Computational biology; Biology; Computer science; Bacteria; Genetics","score_opus":0.032477421687164824,"score_gpt":0.3231043898902272,"score_spread":0.2906269682030624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409571992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955016,0.00029401088,0.000775729,0.0014300925,0.0006225568,0.00016704801,0.000016589707,0.00002318513,0.0011692393],"genre_scores_gemma":[0.99359673,0.0015588528,0.0006185519,0.0022674038,0.00027951697,0.000013427709,0.00012425637,0.00000622755,0.001535023],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99884814,0.00022168791,0.0002970373,0.00045989637,0.000008826843,0.0001644128],"domain_scores_gemma":[0.9993981,0.00016239005,0.000086962995,0.00019483251,0.00009663607,0.0000610921],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000661903,0.00010948093,0.00019744658,0.00003211411,0.00014691944,0.000074393734,0.00007498169,0.00031322826,0.00005425745],"category_scores_gemma":[0.0022525184,0.00010245333,0.000044823555,0.00008091506,0.0001623216,0.0000063581842,0.00023032496,0.00012296143,0.000028851822],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056001965,0.000028656586,0.44537294,0.000029889552,0.00003111145,2.7699832e-7,0.0000048484267,1.8976309e-7,0.52751446,0.0001784306,0.005467629,0.021315582],"study_design_scores_gemma":[0.0006014877,0.00029322083,0.5232083,0.00007516357,0.00004242991,0.00004101554,0.000017133258,0.000010296307,0.012995362,0.00020055642,0.4623041,0.00021091633],"about_ca_topic_score_codex":0.000014076141,"about_ca_topic_score_gemma":0.000079664016,"teacher_disagreement_score":0.5145191,"about_ca_system_score_codex":0.000007689756,"about_ca_system_score_gemma":0.000037410267,"threshold_uncertainty_score":0.41779253},"labels":[],"label_agreement":null},{"id":"W4409716498","doi":"10.1016/j.cmicom.2025.105077","title":"Are bactericidal antibiotics necessary to effectively treat bloodstream infections?","year":2025,"lang":"en","type":"article","venue":"CMI Communications","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Antibiotics; Bloodstream infection; Medicine; Microbiology; Intensive care medicine; Biology","score_opus":0.024202297471647347,"score_gpt":0.31673619476047354,"score_spread":0.2925338972888262,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409716498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98660064,0.00018132458,0.002148884,0.0022703046,0.00018176212,0.00033683912,0.0000410093,0.000069892325,0.008169327],"genre_scores_gemma":[0.9953212,0.00008501674,0.0019369998,0.00064351293,0.000050227947,0.000018294042,0.00021246845,0.000012678972,0.0017196166],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99912006,0.00018716182,0.00022741649,0.00026903913,0.00004658269,0.00014972898],"domain_scores_gemma":[0.9979214,0.00007983371,0.00010122521,0.0016364924,0.00019058702,0.00007046147],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001671849,0.00012489891,0.00013369425,0.000099340126,0.00035752353,0.000086306085,0.00052608876,0.000107425316,0.00001377336],"category_scores_gemma":[0.0006492601,0.00013662249,0.00007411425,0.00036903587,0.000098752054,0.0000068578206,0.00046097804,0.000113400674,0.00005243126],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017228405,0.0005339009,0.19415624,0.000033122535,0.00006500044,2.910236e-7,0.00006312304,0.000020079222,0.7944626,0.00076022354,0.0052066515,0.0046814973],"study_design_scores_gemma":[0.0005285014,0.00013578177,0.80426645,0.00009764416,0.00007888172,0.000006445201,0.00034782683,0.00012418098,0.1135065,0.00016629252,0.08042868,0.0003127863],"about_ca_topic_score_codex":0.00008463017,"about_ca_topic_score_gemma":0.0004943424,"teacher_disagreement_score":0.6809561,"about_ca_system_score_codex":0.000031373573,"about_ca_system_score_gemma":0.00006120228,"threshold_uncertainty_score":0.55713034},"labels":[],"label_agreement":null},{"id":"W4409767863","doi":"10.1128/spectrum.02545-24","title":"Multi-year comparison of VITEK MS performance for identification of rarely encountered pathogenic gram-positive organisms (GPOs) in a large integrated Canadian healthcare region","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"16S ribosomal RNA; Bacilli; Gram; Gram-Positive Cocci; Clinical microbiology; Microbiology; Biology; Bacteria; Database; Staphylococcus aureus; Genetics","score_opus":0.013617316541397188,"score_gpt":0.2754699580400726,"score_spread":0.26185264149867543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409767863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955402,0.00022313013,0.0027027864,0.0003775378,0.00020818664,0.00052164466,0.0004028886,0.0000080240015,0.000015600615],"genre_scores_gemma":[0.9972655,0.00003012144,0.00047842955,0.000096865144,0.000015563357,0.00002221626,0.0019026553,0.000010793819,0.00017785035],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868125,0.00012258554,0.0005712509,0.0003484896,0.000019680496,0.00025677096],"domain_scores_gemma":[0.99921376,0.000019252708,0.00024040093,0.00028377873,0.00020446818,0.000038366874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030523332,0.0001236311,0.00026022672,0.00018003683,0.0000746205,0.000010214887,0.00019291781,0.00023512579,0.000007406587],"category_scores_gemma":[0.00013663471,0.00013136968,0.0000686522,0.0002318567,0.00009262518,0.000005771791,0.000037070346,0.000103221464,0.0000021965338],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013627374,0.00010449695,0.09574212,0.00007422858,0.000024598463,2.4208686e-7,0.00025470005,0.0000041819153,0.90315115,0.00015028383,0.00013580546,0.0002219293],"study_design_scores_gemma":[0.0009029012,0.00022181855,0.14464991,0.00007358652,0.000014702137,0.000004313639,0.0004882606,0.00043799373,0.8524932,0.000027311382,0.0005662551,0.00011970804],"about_ca_topic_score_codex":0.0046110903,"about_ca_topic_score_gemma":0.11812831,"teacher_disagreement_score":0.11351722,"about_ca_system_score_codex":0.00009648431,"about_ca_system_score_gemma":0.00029137358,"threshold_uncertainty_score":0.8979635},"labels":[],"label_agreement":null},{"id":"W4409792855","doi":"10.1139/cjm-2025-0035","title":"Rapid identification of <i>Fusarium</i> species causing head blight in Canada using MALDI-TOF mass spectrometry","year":2025,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Saskatchewan; Simon Fraser University; University of Alberta; University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Wheat Development Commission; Manitoba Crop Alliance; Western Grains Research Foundation","keywords":"Fusarium; Biology; Mass spectrometry; Species identification; Mycotoxin; Matrix-assisted laser desorption/ionization; Botany; Chromatography; Chemistry; Genetics; Desorption","score_opus":0.015548138646681031,"score_gpt":0.23159995091841515,"score_spread":0.21605181227173412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409792855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966143,0.0011062053,0.0007040776,0.000337296,0.00091910333,0.00007982722,0.000072211194,8.3023326e-7,0.00016617452],"genre_scores_gemma":[0.99890584,0.000035227975,0.0005171648,0.00018275742,0.00008295375,4.2823305e-7,0.00006528428,0.0000075864627,0.00020273459],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866796,0.00013478739,0.00071105803,0.00018116081,0.00003307789,0.00027197733],"domain_scores_gemma":[0.9991267,0.000020751619,0.0002762291,0.0002160775,0.00025700429,0.000103270504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004582436,0.0001071069,0.00024990446,0.00035381957,0.00006437489,0.000023389819,0.00020703251,0.00011297299,0.00006921744],"category_scores_gemma":[0.00022126063,0.00010556142,0.00006670485,0.0002311295,0.00010577319,0.0000075773687,0.000020363907,0.00014009845,6.4610333e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018615206,0.0000062276995,0.019666083,0.000023502927,0.0000347253,0.000014261675,0.00003196179,0.00009507585,0.9795164,0.00003876579,0.00044880778,0.0001056161],"study_design_scores_gemma":[0.00032972964,0.000034870398,0.015201795,0.00004302899,0.000021695865,0.0001267867,0.00024826234,0.000021164258,0.9742609,0.000040859344,0.009561612,0.00010927816],"about_ca_topic_score_codex":0.33017123,"about_ca_topic_score_gemma":0.92777884,"teacher_disagreement_score":0.5976076,"about_ca_system_score_codex":0.0005234502,"about_ca_system_score_gemma":0.004894196,"threshold_uncertainty_score":0.86820936},"labels":[],"label_agreement":null},{"id":"W4410281652","doi":"10.1093/cid/ciaf236","title":"Modeling the Impact and Cost of a Culture-Dependent Molecular Test for Antimicrobial Resistance in Resource-Limited Settings","year":2025,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Impact","funders":"Department of Health and Social Care; Global Innovation Fund","keywords":"Medicine; Turnaround time; Empiric therapy; Blood culture; Intensive care medicine; Limited resources; Antibiotic resistance; Emergency medicine; Molecular diagnostics; Health care; Cost effectiveness; Diagnostic test; Antibiotics; Sepsis; Internal medicine; Pathology; Bioinformatics; Risk analysis (engineering)","score_opus":0.017799981247154366,"score_gpt":0.3410607810657282,"score_spread":0.3232607998185738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410281652","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99604523,0.00055520085,0.002195885,0.00031087906,0.00006526672,0.0004999039,0.00011176079,0.000016262204,0.00019962335],"genre_scores_gemma":[0.9990309,0.00008394374,0.00005649432,0.0005045933,0.000055897865,0.00003587758,0.000092723254,0.000009350828,0.0001302507],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99892926,0.00012648026,0.0004446542,0.0003173916,0.000043856096,0.00013837508],"domain_scores_gemma":[0.99920833,0.00022131616,0.000101185135,0.00027729437,0.00013923946,0.000052620868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040892905,0.00010497701,0.00018879985,0.00003430898,0.00008323696,0.000046478937,0.00011455494,0.00011212087,0.0000017901442],"category_scores_gemma":[0.0045571052,0.000081343765,0.0001507553,0.000116785945,0.0001290761,0.0000040241503,0.00008236796,0.00008973734,2.9581503e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005567549,0.001290091,0.5052913,0.00032658194,0.00017250833,0.0000024140127,0.000090909554,0.0026027597,0.47948667,0.00019762124,0.0073925327,0.002589901],"study_design_scores_gemma":[0.020019788,0.0021114482,0.82685906,0.0017638945,0.0009828279,0.000012040291,0.0008453134,0.04383546,0.07126933,0.008186105,0.022103464,0.002011237],"about_ca_topic_score_codex":0.00002521857,"about_ca_topic_score_gemma":0.00015983591,"teacher_disagreement_score":0.40821734,"about_ca_system_score_codex":0.000015011432,"about_ca_system_score_gemma":0.00008331392,"threshold_uncertainty_score":0.545561},"labels":[],"label_agreement":null},{"id":"W4410459214","doi":"10.1016/j.ajem.2025.05.019","title":"Association between time to gram stain positivity and true bacteremia in pediatric emergency department patients","year":2025,"lang":"en","type":"article","venue":"The American Journal of Emergency Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal","funders":"Université de Montréal","keywords":"Bacteremia; Emergency department; Gram staining; Gram; Medicine; Gram-negative bacterial infections; Emergency medicine; Medical emergency; Microbiology; Biology; Bacteria; Antibiotics; Genetics","score_opus":0.010432643463005186,"score_gpt":0.2969283723963948,"score_spread":0.2864957289333896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410459214","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99612683,0.00014153296,0.00015084438,0.0027750349,0.00042416604,0.00015561724,0.000008790776,0.0000027940482,0.00021440125],"genre_scores_gemma":[0.9981497,0.00047497122,0.000054956927,0.000090790665,0.0004304179,0.0000034983004,0.000024944886,0.0000065821428,0.00076414744],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998621,0.00027491065,0.00062390324,0.00015091842,0.0001698376,0.0001594141],"domain_scores_gemma":[0.99892455,0.000049781054,0.00051895354,0.00016131098,0.00026097833,0.000084418694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010991691,0.00010316224,0.00024769866,0.00011698222,0.00005562931,0.000003855778,0.00016307579,0.000031245112,0.00013182005],"category_scores_gemma":[0.0012299063,0.00007532386,0.000050061146,0.0004161141,0.000026252983,0.000006933105,0.00005742128,0.00011186253,0.0000042270967],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008621781,0.00005796148,0.95517635,0.000010263372,0.0000594187,2.546662e-7,0.00011436542,0.0000027420795,0.028986404,0.000001987481,0.008885768,0.006618248],"study_design_scores_gemma":[0.00031788333,0.000631091,0.99671143,0.000014248493,0.00009748333,3.5833492e-7,0.000057415917,0.0000031837478,0.00035228452,0.00009056634,0.0016537262,0.000070310285],"about_ca_topic_score_codex":0.000052294665,"about_ca_topic_score_gemma":0.000037206806,"teacher_disagreement_score":0.04153508,"about_ca_system_score_codex":0.000057645,"about_ca_system_score_gemma":0.00004351918,"threshold_uncertainty_score":0.30716178},"labels":[],"label_agreement":null},{"id":"W4410910222","doi":"10.1016/j.prevetmed.2025.106588","title":"A tale of two labs: Comparing antimicrobial resistance data in pets across commercial and academic diagnostic laboratories","year":2025,"lang":"en","type":"article","venue":"Preventive Veterinary Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Animal and Plant Health Inspection Service; U.S. Department of Agriculture","keywords":"Antibiotic resistance; Veterinary medicine; Biology; Medicine; Microbiology; Antibiotics","score_opus":0.05895805456732086,"score_gpt":0.395294968097873,"score_spread":0.3363369135305522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410910222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99724,0.0013662867,0.00026895138,0.00042758504,0.0002685426,0.00019928167,0.000095307936,0.0000075158673,0.00012652072],"genre_scores_gemma":[0.9986908,0.0003103589,0.00029512792,0.00010413093,0.00010597155,0.00000913242,0.000290842,0.0000067165856,0.00018693492],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99891,0.00017916024,0.00035026757,0.00034878257,0.000063456806,0.00014834995],"domain_scores_gemma":[0.99924433,0.00013223401,0.00011299246,0.00039856357,0.000081210856,0.000030684434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006560312,0.0001062507,0.00023496777,0.00004181486,0.000060330334,0.000009348214,0.00027760048,0.0000641155,0.00000609827],"category_scores_gemma":[0.001555,0.0001069978,0.000012819175,0.00018918364,0.00029788105,0.000014797365,0.0005692548,0.00012084291,4.574483e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020173045,0.000053608168,0.19322672,0.00025007845,0.000021064881,0.000005450253,0.00040897916,6.77883e-7,0.80420136,0.00005332499,0.00085739116,0.00071963744],"study_design_scores_gemma":[0.0029441665,0.00025340662,0.94692016,0.0015720316,0.000041799933,0.00001159535,0.0005470768,0.000048434038,0.039661862,0.00017565949,0.007607387,0.0002164355],"about_ca_topic_score_codex":0.000090523296,"about_ca_topic_score_gemma":0.000490824,"teacher_disagreement_score":0.7645395,"about_ca_system_score_codex":0.000010758764,"about_ca_system_score_gemma":0.00004344225,"threshold_uncertainty_score":0.4363244},"labels":[],"label_agreement":null},{"id":"W4410946129","doi":"10.1101/2025.06.02.25328768","title":"Optimizing and Evaluating Nanopore-Based Targeted and Metagenomic Sequencing Workflows for Rapid Diagnosis of Acute Invasive Infections from Normally Sterile Body Fluids","year":2025,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre","funders":"","keywords":"Metagenomics; Workflow; Nanopore sequencing; Computational biology; Nanopore; Computer science; Biology; DNA sequencing; Nanotechnology; Materials science; Genetics; Gene","score_opus":0.03434822650303153,"score_gpt":0.298174732713377,"score_spread":0.2638265062103455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410946129","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913958,0.0011160037,0.00539852,0.00007408071,0.00041233475,0.00079974975,0.0007481911,0.000024482237,0.000030850984],"genre_scores_gemma":[0.96412075,0.0004743645,0.03332189,0.000093711096,0.00011967082,0.0003778366,0.0014108577,0.000024744913,0.00005615022],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982825,0.00020258964,0.0005464394,0.0006836346,0.00009272784,0.00019210325],"domain_scores_gemma":[0.99858826,0.00024812762,0.00033565762,0.00047160214,0.00028105878,0.00007531033],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006637521,0.0002579827,0.00040457997,0.000111214875,0.00016370817,0.0000993723,0.00017714969,0.00028703676,0.000031205655],"category_scores_gemma":[0.0008665793,0.0002804046,0.00014446504,0.00007688217,0.00009462016,0.000008033768,0.00043026955,0.00015375885,2.8657038e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000066292465,0.000031676067,0.03502107,0.00026484855,0.00034658462,5.7973324e-7,0.00022315653,0.00045129008,0.9624657,0.0000025303798,0.000025103502,0.0011011804],"study_design_scores_gemma":[0.0010286022,0.00028675428,0.020165358,0.0004182377,0.0007654427,0.000001444523,0.00011536414,0.008859747,0.9675913,0.00013142465,0.00020543586,0.0004309209],"about_ca_topic_score_codex":0.00018421421,"about_ca_topic_score_gemma":0.00015416204,"teacher_disagreement_score":0.027923372,"about_ca_system_score_codex":0.00003963154,"about_ca_system_score_gemma":0.000424976,"threshold_uncertainty_score":0.99996483},"labels":[],"label_agreement":null},{"id":"W4410967130","doi":"10.1038/s44328-025-00039-w","title":"Metabolite microextraction on surface-enhanced Raman scattering nanofibres and D2O probing accelerate antibiotic susceptibility testing","year":2025,"lang":"en","type":"article","venue":"npj Biosensing","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre in Green Chemistry and Catalysis; PROTEO; Université de Montréal; Regroupement Québécois sur les Matériaux de Pointe; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation","keywords":"Metabolite; Raman scattering; Raman spectroscopy; Antibiotics; Materials science; Chemistry; Physics; Biochemistry; Optics","score_opus":0.022280707274197342,"score_gpt":0.2758276991039988,"score_spread":0.25354699182980145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410967130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997172,0.0001345991,0.0005794449,0.00028610605,0.00045052776,0.00031120956,0.0000066650755,0.000082465725,0.0009769881],"genre_scores_gemma":[0.9947716,0.000017468796,0.004475588,0.00027876356,0.00012603756,0.0000010930518,0.00004920176,0.000023649864,0.0002566267],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982955,0.00015407725,0.00039175767,0.0007360567,0.00009395135,0.0003286624],"domain_scores_gemma":[0.9990672,0.00007403979,0.00015786842,0.0004352285,0.00019755373,0.00006814035],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00052312296,0.0002355649,0.00023184631,0.00008559193,0.00037068684,0.0002894542,0.0001006813,0.00016065613,0.0000036211693],"category_scores_gemma":[0.0005372499,0.00024634833,0.00006329009,0.00026740038,0.00012380639,0.000022072763,0.00013046851,0.00014527049,0.0000068465633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055741577,0.00004429974,0.0062934286,0.00009326684,0.000026379135,9.559153e-7,0.000061980485,0.000052579733,0.97803473,0.000016799646,0.00003234534,0.015287495],"study_design_scores_gemma":[0.00031297552,0.00005627603,0.06188712,0.00015603726,0.000026404761,0.000008338032,0.00012733265,0.0005456443,0.93639314,0.000035857498,0.00022837501,0.00022249036],"about_ca_topic_score_codex":0.0000728118,"about_ca_topic_score_gemma":0.000058188085,"teacher_disagreement_score":0.05559369,"about_ca_system_score_codex":0.000040338902,"about_ca_system_score_gemma":0.000059179747,"threshold_uncertainty_score":0.99999887},"labels":[],"label_agreement":null},{"id":"W4411328259","doi":"10.1007/s43678-025-00942-1","title":"Working towards consistency and clarity in pediatric blood culture management","year":2025,"lang":"en","type":"editorial","venue":"Canadian Journal of Emergency Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"","keywords":"CLARITY; Medicine; Consistency (knowledge bases); Organizational culture; Public relations; Political science","score_opus":0.03276250311333293,"score_gpt":0.3096827542706255,"score_spread":0.2769202511572926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411328259","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.014895101,0.022822987,0.00002005111,0.00052949245,0.95434475,0.00021206708,0.00003241938,0.0000030801332,0.007140031],"genre_scores_gemma":[0.072491825,0.0460203,0.00037851377,0.00009776671,0.86414945,0.000009872253,0.0004944697,0.000041489082,0.01631629],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982712,0.00010247277,0.0008543718,0.00030060892,0.0002206625,0.00025068023],"domain_scores_gemma":[0.9985847,0.0000171564,0.00038398625,0.0002485553,0.0004353378,0.0003302489],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008412424,0.00020816765,0.00036977863,0.00035419784,0.00008745797,0.000014793353,0.0003024068,0.0005005991,0.00015426302],"category_scores_gemma":[0.0022242258,0.00018928903,0.00008847603,0.0002807401,0.000064633365,0.0000045340535,0.00003952288,0.0005551081,5.209862e-7],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015091149,0.00001709849,0.009239316,0.0002847284,0.000087860084,0.0000544512,0.00016655178,5.549489e-7,0.00041402172,0.00003197739,0.98887134,0.00081699074],"study_design_scores_gemma":[0.000766099,0.00018467146,0.0057797683,0.0004015381,0.00037462998,0.0000044223134,0.000187817,6.32103e-7,0.000013137678,0.00014220893,0.9919508,0.0001942431],"about_ca_topic_score_codex":0.0015893839,"about_ca_topic_score_gemma":0.038403187,"teacher_disagreement_score":0.09019529,"about_ca_system_score_codex":0.000049082057,"about_ca_system_score_gemma":0.0011738505,"threshold_uncertainty_score":0.97914344},"labels":[],"label_agreement":null},{"id":"W4411638769","doi":"10.36584/cjic.2023.001.02.19.22","title":"Evaluation of the accuracy in the application of the Canadian Nosocomial Infection Surveillance Program (CNISP) bloodstream infection surveillance definitions","year":2023,"lang":"en","type":"article","venue":"Canadian Journal of Infection Control","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Bloodstream infection; Medicine; Epidemiological surveillance; Intensive care medicine; Epidemiology; Internal medicine","score_opus":0.03574675008817821,"score_gpt":0.29694612420680916,"score_spread":0.2611993741186309,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411638769","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99663824,0.000036712514,0.00015592748,0.0011133874,0.0007877531,0.00089889334,0.00005310331,0.000006193222,0.00030979668],"genre_scores_gemma":[0.9995226,0.000033850647,0.000006508197,0.00008982244,0.00021445287,0.00008057132,0.00003672412,0.000009601485,0.0000058447545],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978713,0.0009765583,0.0005247736,0.00014462198,0.0002881335,0.00019464518],"domain_scores_gemma":[0.99758637,0.00011491785,0.00061816745,0.00035713706,0.001228159,0.00009522116],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033568558,0.00010636573,0.0001524185,0.00019851254,0.00034371638,0.00006402147,0.00018116244,0.00014454218,0.00001273186],"category_scores_gemma":[0.0036898423,0.000074423384,0.00017903569,0.0008204988,0.0001352734,0.000021884134,0.0000105209065,0.0002191651,0.0000024097083],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001169401,0.00004417045,0.966929,0.000015864398,0.000046157526,1.7609469e-7,0.000105723935,0.0034910284,0.017894987,0.00011940741,0.00035767732,0.010984113],"study_design_scores_gemma":[0.00073308306,0.0000805435,0.9918986,0.000023867808,0.000045126577,0.000023435736,0.000017391705,0.0012736296,0.001606851,0.0002136826,0.0040120143,0.00007174841],"about_ca_topic_score_codex":0.29066116,"about_ca_topic_score_gemma":0.9742086,"teacher_disagreement_score":0.68354744,"about_ca_system_score_codex":0.00022299196,"about_ca_system_score_gemma":0.002229294,"threshold_uncertainty_score":0.7140624},"labels":[],"label_agreement":null},{"id":"W4411660552","doi":"10.51847/fblgd2qawa","title":"10.51847/FBlGD2qaWa","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Enterococcus faecalis; Microbiology; Virulence; Biofilm; Antimicrobial; Enterococcus; Antibiotic resistance; Urinary system; Biology; Bacteria; Staphylococcus aureus; Antibiotics; Gene","score_opus":0.007398600484953852,"score_gpt":0.2010798942982023,"score_spread":0.19368129381324845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411660552","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.16032441,0.000023529316,0.0000024062356,0.00018030305,0.00000508263,0.00012001131,0.000011924973,0.000040346604,0.839292],"genre_scores_gemma":[0.018551564,3.6405476e-7,0.00017275012,0.00010010959,0.00016142997,0.000008783098,0.00009830697,0.000012254828,0.98089445],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994371,0.000029765015,0.000121967634,0.00022197355,0.00005507072,0.00013412957],"domain_scores_gemma":[0.99956125,0.000005062692,0.000016516704,0.0002942429,0.000040526622,0.0000824046],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00010590874,0.000074355434,0.000066044326,0.000016629629,0.000051252,0.000034935958,0.00012986932,0.000058685146,0.93971574],"category_scores_gemma":[0.00007265311,0.00007838303,0.000039597602,0.00006184272,0.000018595541,0.0000020838804,0.00003073988,0.000028511258,0.8293479],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006422071,0.000039942952,0.0000030190224,0.0000033285353,0.000009662821,5.303496e-7,0.000006273397,0.000014706654,0.3324427,6.2592494e-7,0.02403696,0.643378],"study_design_scores_gemma":[0.000106193045,0.000077560515,0.00041539018,0.0000030843407,0.0000039287875,0.0000034577397,6.4699435e-7,0.000023365259,0.0040199645,8.760275e-7,0.9952431,0.00010248249],"about_ca_topic_score_codex":0.000009189736,"about_ca_topic_score_gemma":4.4452156e-7,"teacher_disagreement_score":0.97120607,"about_ca_system_score_codex":0.000006225027,"about_ca_system_score_gemma":0.000018784905,"threshold_uncertainty_score":0.31963673},"labels":[],"label_agreement":null},{"id":"W4411798838","doi":"10.1371/journal.pone.0327489","title":"Differentiating bacteria by their unique surface interactions","year":2025,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Acinetobacter baumannii; Bacteria; Staphylococcus aureus; Enterococcus faecalis; Microbiology; Biofilm; Bacterial cell structure; Antibiotic resistance; Biology; Pseudomonas aeruginosa; Antibiotics; Chemistry; Genetics","score_opus":0.02842128753588921,"score_gpt":0.2491209275804934,"score_spread":0.22069964004460418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411798838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99695224,0.00004634436,0.000732009,0.00045191447,0.0001037791,0.00012479122,0.000043663164,0.000034595796,0.0015106639],"genre_scores_gemma":[0.99126565,0.000028140463,0.0012589787,0.00017668448,0.00005170638,0.000010859829,0.00039303274,0.000009469974,0.006805491],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999372,0.000073227195,0.00017123952,0.00022520048,0.00004266754,0.00011565125],"domain_scores_gemma":[0.9995194,0.000025079755,0.00005438476,0.0002769277,0.00009134237,0.00003284609],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009174696,0.00008678634,0.000102993115,0.000017613178,0.00009445065,0.00006207383,0.00011835831,0.000060142316,0.000121676494],"category_scores_gemma":[0.00019310872,0.00008715925,0.000037065118,0.000070620255,0.000023382596,0.0000044848907,0.00008262633,0.00007711572,0.000009055428],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011845483,0.00033740368,0.0071007735,0.00002827221,0.00008765081,4.086917e-8,0.000028296956,3.4958225e-7,0.9909373,0.000036951446,0.001172873,0.00025827435],"study_design_scores_gemma":[0.00013306014,0.000020400688,0.00820273,0.00006085612,0.0000225293,2.209599e-7,0.000056539255,0.00014551435,0.9890631,0.000051483792,0.0021519698,0.00009159585],"about_ca_topic_score_codex":0.000021532747,"about_ca_topic_score_gemma":0.000047546255,"teacher_disagreement_score":0.005686603,"about_ca_system_score_codex":0.0000147745,"about_ca_system_score_gemma":0.000027460357,"threshold_uncertainty_score":0.3554251},"labels":[],"label_agreement":null},{"id":"W4411866284","doi":"10.1063/5.0248096","title":"Point of care sepsis diagnosis: Exploring microfluidic techniques for sample preparation, biomarker isolation, and detection","year":2025,"lang":"en","type":"review","venue":"Biomicrofluidics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Microfluidics; Sepsis; Medical diagnosis; Software portability; Point of care; Computer science; Turnaround time; Isolation (microbiology); Risk analysis (engineering); Intensive care medicine; Medicine; Nanotechnology; Bioinformatics; Biology; Pathology; Materials science; Immunology","score_opus":0.05470971448342317,"score_gpt":0.33880336729759364,"score_spread":0.2840936528141705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411866284","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013081139,0.9813563,0.014708064,0.00001347048,0.00033267206,0.0015836644,0.0006410275,0.00004526713,0.00001138991],"genre_scores_gemma":[0.0010265118,0.99353224,0.0021765693,0.00001962729,0.00014453009,0.001215858,0.0017913205,0.000043010423,0.00005030786],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981998,0.00013301526,0.00079352275,0.0006216572,0.000067937945,0.00018402297],"domain_scores_gemma":[0.9985177,0.00016704596,0.00037517105,0.00049801037,0.00038940122,0.000052687083],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032249314,0.0003171251,0.0006468054,0.0002277693,0.00015648229,0.000066065084,0.00018252274,0.00043062735,0.0000046043333],"category_scores_gemma":[0.0008015828,0.00032476024,0.00032244888,0.00023326727,0.00008110571,0.000013373475,0.0001458006,0.000063879364,8.6055246e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004201234,0.000037321795,0.00008968556,0.0150834285,0.00012657265,7.070363e-8,0.00008301448,5.48792e-9,0.30661118,0.000014278749,0.00279893,0.6751135],"study_design_scores_gemma":[0.0001151107,0.000117629635,0.000016299995,0.0018496166,0.00028963637,0.0000027400213,0.000059293932,7.617624e-7,0.2677089,0.000015498448,0.72959065,0.00023385874],"about_ca_topic_score_codex":0.000052406827,"about_ca_topic_score_gemma":0.000018130067,"teacher_disagreement_score":0.72679174,"about_ca_system_score_codex":0.00006800789,"about_ca_system_score_gemma":0.00023696419,"threshold_uncertainty_score":0.9999204},"labels":[],"label_agreement":null},{"id":"W4412441833","doi":"10.1099/jmm.0.001992","title":"Scanning electron microscopy and extended viability testing as a tool to evaluate the safety of MALDI-TOF extracts for risk group 3 spore-forming bacteria","year":2025,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Bacillus anthracis; Bacillus cereus; Chromatography; Spore; Filtration (mathematics); Scanning electron microscope; Biomedical engineering; Bacteria; Microbiology; Chemistry; Materials science; Biology; Medicine; Mathematics; Composite material","score_opus":0.012366486019471669,"score_gpt":0.3184526286618159,"score_spread":0.30608614264234424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412441833","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930374,0.00030189552,0.0043946537,0.0014637894,0.00039373394,0.00035288156,0.000025217474,0.000004221978,0.00002622024],"genre_scores_gemma":[0.9913623,0.00007828886,0.0077476585,0.0005330473,0.00019072375,0.000008282009,0.000025444562,0.000009901621,0.000044390952],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99818206,0.00029159663,0.00087898073,0.0002780371,0.00009864488,0.00027070125],"domain_scores_gemma":[0.9984706,0.0003754141,0.00041905628,0.00023793455,0.00039418857,0.000102806865],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.004580106,0.0001435038,0.00034243244,0.00006954209,0.00014675592,0.000028276163,0.0003557239,0.00024270025,0.000034809967],"category_scores_gemma":[0.0103775,0.00010210638,0.000116526324,0.0001302248,0.00023881746,0.000008602523,0.00016337208,0.0002692789,7.236598e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007322097,0.0000730457,0.0035390232,0.00005955201,0.000070138376,9.993828e-7,0.00006570769,0.0000025908332,0.9774148,0.00006769819,0.000259073,0.01771518],"study_design_scores_gemma":[0.0032992754,0.0023307996,0.12912776,0.00048781975,0.00022999692,0.00055354537,0.00028933256,0.00017864011,0.8322433,0.0011882716,0.029746745,0.00032452148],"about_ca_topic_score_codex":0.00004444891,"about_ca_topic_score_gemma":0.000036668724,"teacher_disagreement_score":0.14517148,"about_ca_system_score_codex":0.000039210398,"about_ca_system_score_gemma":0.00036335952,"threshold_uncertainty_score":0.9979585},"labels":[],"label_agreement":null},{"id":"W4412468916","doi":"10.1021/acs.analchem.5c01286","title":"Rapid Screening of Methicillin-Resistant <i>Staphylococcus aureus</i> Using MALDI-TOF MS and Machine Learning: A Randomized, Multicenter Study","year":2025,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"L'Alliance Boviteq","funders":"National Research Foundation of Korea","keywords":"Chemistry; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Microbiology; Matrix-assisted laser desorption/ionization; Bacteria; Organic chemistry","score_opus":0.02800292128451815,"score_gpt":0.29467341461680635,"score_spread":0.2666704933322882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412468916","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946981,0.00080395327,0.0030713216,0.00011311882,0.00003295022,0.00029530952,0.000014533136,0.000017417076,0.0009532736],"genre_scores_gemma":[0.9976843,0.000055850513,0.0010738187,0.00009038792,0.00006111974,0.000009988352,0.000055344797,0.000014488864,0.0009547184],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983677,0.00020793306,0.00057339144,0.00048306576,0.00015636196,0.00021151992],"domain_scores_gemma":[0.9990119,0.00015773991,0.00016879204,0.0003688309,0.00019746748,0.0000953119],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009876739,0.00019846484,0.00047316568,0.000040605297,0.00011146795,0.000051909934,0.00017295034,0.00016691213,0.000075644864],"category_scores_gemma":[0.0017288539,0.00018128478,0.00018048342,0.00016110658,0.00026221335,0.0000051614056,0.00020806382,0.00023856238,5.4764456e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037694806,0.000205775,0.0129706785,0.00014421932,0.00028829378,0.0000026925693,0.00005350588,0.0000483911,0.9821814,0.00002300003,0.000028223592,0.00028437158],"study_design_scores_gemma":[0.044571184,0.00013941237,0.0029163228,0.00017527217,0.00089877757,0.00000160471,0.0010064741,0.050757777,0.8953736,0.00008163631,0.0035126153,0.00056531775],"about_ca_topic_score_codex":0.00015960539,"about_ca_topic_score_gemma":0.000016986498,"teacher_disagreement_score":0.08680776,"about_ca_system_score_codex":0.000013126166,"about_ca_system_score_gemma":0.000055489272,"threshold_uncertainty_score":0.7392579},"labels":[],"label_agreement":null},{"id":"W4412481490","doi":"10.1007/s40291-025-00797-3","title":"Optimization of Metagenomic Next-Generation Sequencing Workflow with a Novel Host Depletion Method for Enhanced Pathogen Detection","year":2025,"lang":"en","type":"article","venue":"Molecular Diagnosis & Therapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Defence Medical Centre","funders":"Taipei Veterans General Hospital","keywords":"Metagenomics; Workflow; Human genetics; Computational biology; Host (biology); Pathogen; Biology; DNA sequencing; Computer science; Bioinformatics; Microbiology; Genetics; Gene","score_opus":0.038348900606788756,"score_gpt":0.28369089207618653,"score_spread":0.24534199146939778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412481490","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4494587,0.00024562,0.5496585,0.00007007413,0.00007574464,0.0004545633,0.000014196659,0.000012451176,0.000010191208],"genre_scores_gemma":[0.8714632,0.0002363674,0.12707528,0.00030197826,0.00006191166,0.0004958615,0.00031456145,0.000025745401,0.00002508907],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989145,0.00012878083,0.00029925507,0.00042005556,0.000089418834,0.0001479997],"domain_scores_gemma":[0.99913406,0.00003718293,0.00018096704,0.00032826475,0.0002891386,0.000030381112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003868394,0.00015692937,0.00017918776,0.00009346058,0.000110508125,0.00006613125,0.00011528155,0.00013466727,0.000009706854],"category_scores_gemma":[0.00016458907,0.00015499744,0.00011234052,0.00022583138,0.000026530235,0.000013360342,0.000019426918,0.000043946213,2.870556e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014460072,0.00007945181,0.00013459432,0.000019217625,0.00010384853,1.2141608e-7,0.00005938012,0.019085905,0.9600318,0.000036303605,0.000008734972,0.020296015],"study_design_scores_gemma":[0.0009114094,0.00022974957,0.00053802854,0.000028154238,0.000053982032,0.0000010262487,0.00003898781,0.014347019,0.98318887,0.000022474635,0.0004893325,0.0001509878],"about_ca_topic_score_codex":0.00004788404,"about_ca_topic_score_gemma":0.00011273446,"teacher_disagreement_score":0.42258316,"about_ca_system_score_codex":0.00005349786,"about_ca_system_score_gemma":0.000091841786,"threshold_uncertainty_score":0.63206124},"labels":[],"label_agreement":null},{"id":"W4412492619","doi":"10.1128/spectrum.00441-25","title":"Performance evaluation of the NG-TEST CARBA 5 and Genobio K.N.I.V.O. detection K-Set lateral flow assays for the detection of carbapenemases","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto Public Health","funders":"","keywords":"Acinetobacter baumannii; Pseudomonas aeruginosa; Klebsiella pneumoniae; Morganella morganii; Biology; Microbiology; Klebsiella oxytoca; Acinetobacter; Bacteria; Escherichia coli; Antibiotics; Gene; Genetics","score_opus":0.013508919232932706,"score_gpt":0.24962969099230387,"score_spread":0.23612077175937116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412492619","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978113,0.00036253236,0.00058931595,0.00020076043,0.00045913254,0.0004774536,0.00005465734,0.0000054852057,0.00003935744],"genre_scores_gemma":[0.999609,0.000041391104,0.000036814377,0.00004207814,0.000057417812,0.000035312576,0.0000489783,0.000005459763,0.00012353303],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992998,0.000119258766,0.00022705599,0.00020759326,0.00003294812,0.00011332181],"domain_scores_gemma":[0.9993542,0.00006906272,0.00013605149,0.0002760699,0.00015587284,0.000008739114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005960898,0.00008731669,0.00010852738,0.000031673357,0.00015973141,0.000009786374,0.00012462249,0.0001203756,0.00000645645],"category_scores_gemma":[0.00030222474,0.00006011704,0.000065674845,0.0000938191,0.00015572034,0.0000038190524,0.00006724268,0.000056852143,3.674988e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004721039,0.000015974241,0.012472023,0.000028181676,0.000033935718,5.305876e-9,0.000038883314,0.00006258503,0.9823097,0.000003262803,0.000019317886,0.0049689263],"study_design_scores_gemma":[0.00036305914,0.00012065121,0.10454951,0.000012041692,0.00008658145,0.0000065319423,0.000039328115,0.003908829,0.8902288,0.000031091255,0.0006006669,0.00005288622],"about_ca_topic_score_codex":0.00007138793,"about_ca_topic_score_gemma":0.0012466985,"teacher_disagreement_score":0.09208087,"about_ca_system_score_codex":0.0000256618,"about_ca_system_score_gemma":0.00006308128,"threshold_uncertainty_score":0.24515018},"labels":[],"label_agreement":null},{"id":"W4413138329","doi":"10.1016/j.annemergmed.2025.06.620","title":"Derivation and Validation of a Clinical Rule to Detect Bacteremia Versus Contaminants in Positive Pediatric Blood Cultures: A Retrospective Cohort Study","year":2025,"lang":"en","type":"article","venue":"Annals of Emergency Medicine","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; Université de Montréal; SickKids Foundation; Centre Hospitalier Universitaire Sainte-Justine","funders":"Université de Montréal","keywords":"Bacteremia; Medicine; Confidence interval; Retrospective cohort study; Clinical prediction rule; Cohort; Blood culture; Cohort study; Internal medicine; Derivation; Intensive care medicine; Emergency medicine; Antibiotics","score_opus":0.07209482887552669,"score_gpt":0.4294064226959216,"score_spread":0.3573115938203949,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413138329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99830633,0.00016668896,0.0000686945,0.0001828349,0.00048484802,0.00049513986,0.000009706781,0.0000032713729,0.00028246973],"genre_scores_gemma":[0.99904954,0.00056693074,0.000060038612,0.000028195685,0.0001283865,0.000016184886,0.000049356546,0.0000041913354,0.00009717325],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99861383,0.00015488494,0.00073296553,0.00029320014,0.000114408795,0.00009070669],"domain_scores_gemma":[0.99901253,0.000046597554,0.0002234791,0.00019356354,0.00048260172,0.00004123322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001035182,0.00008603528,0.00027908184,0.000099230485,0.000024447561,0.0000016715494,0.000079575366,0.00007929565,0.00003282934],"category_scores_gemma":[0.004317759,0.00007769974,0.000040596435,0.00030661965,0.00003132391,0.000006100557,0.000048577083,0.000058775913,3.4377135e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032607827,0.00017196166,0.8461322,0.000027238282,0.00006962503,2.6495417e-7,0.00026463,6.4403434e-7,0.1522907,0.00001046634,0.00033100383,0.00037513883],"study_design_scores_gemma":[0.0011428316,0.0012489631,0.95173806,0.000036557154,0.00008375843,1.027551e-7,0.00029500714,0.0000021721014,0.04532936,0.000046536763,0.000019039922,0.000057603058],"about_ca_topic_score_codex":0.00026917414,"about_ca_topic_score_gemma":0.00023665899,"teacher_disagreement_score":0.10696134,"about_ca_system_score_codex":0.000004107194,"about_ca_system_score_gemma":0.00003725115,"threshold_uncertainty_score":0.51690733},"labels":[],"label_agreement":null},{"id":"W4413441795","doi":"10.1016/j.yamp.2025.05.005","title":"Current State of Metagenomics for Infectious Diseases Diagnosis","year":2025,"lang":"en","type":"article","venue":"Advances in Molecular Pathology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Centre for Disease Control","funders":"","keywords":"Metagenomics; Current (fluid); State (computer science); Computational biology; Intensive care medicine; Biology; Computer science; Data science; Risk analysis (engineering); Medicine; Engineering; Genetics; Electrical engineering","score_opus":0.006720398455603355,"score_gpt":0.30374205037540186,"score_spread":0.2970216519197985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413441795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91478914,0.014102491,0.07013878,0.000040865816,0.00044014375,0.00031506643,0.00006333292,0.000009607183,0.00010056361],"genre_scores_gemma":[0.9953787,0.0025016617,0.0016323685,0.00011346599,0.000017771712,0.00021204317,0.00010889573,0.000009356666,0.000025781228],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999155,0.00009506861,0.0002753413,0.0002962208,0.000032423737,0.00014595041],"domain_scores_gemma":[0.99948126,0.00004510142,0.00009686029,0.00026512743,0.000089101966,0.00002257619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001466335,0.0000937494,0.00017134196,0.0000837658,0.000026287873,0.000007270003,0.00012699369,0.000039494957,0.0000020676607],"category_scores_gemma":[0.00059401913,0.000102348145,0.000083497645,0.00011633413,0.00008786252,0.000005237448,0.00007187311,0.000044137185,6.5764107e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007070187,0.00023587732,0.08985549,0.0001744595,0.000023895986,0.0000042413235,0.000028312583,0.0009552141,0.7015434,0.0013104657,0.00004120534,0.20575672],"study_design_scores_gemma":[0.0023719629,0.00047650968,0.087795034,0.00009565744,0.000114147,0.000008077019,0.000032625958,0.00020484402,0.7870366,0.037857927,0.08351729,0.0004893117],"about_ca_topic_score_codex":0.0000017773173,"about_ca_topic_score_gemma":0.00006479873,"teacher_disagreement_score":0.20526741,"about_ca_system_score_codex":0.000013388926,"about_ca_system_score_gemma":0.000049293474,"threshold_uncertainty_score":0.41736364},"labels":[],"label_agreement":null},{"id":"W4413770254","doi":"10.1093/jac/dkaf223","title":"Distribution and antimicrobial susceptibility profile of pathogens recovered from the bloodstream of Canadian patients: results from the CANWARD study (2007–23)","year":2025,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Surrey Place Centre; Surrey Memorial Hospital; University of Manitoba; Shared Health; Health Sciences Centre; Manitoba Health","funders":"University of Manitoba","keywords":"Microbiology; Antimicrobial; Bloodstream infection; Biology; Distribution (mathematics); Mathematics","score_opus":0.009568486222682766,"score_gpt":0.2321087688316622,"score_spread":0.22254028260897943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413770254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920737,0.000058321435,0.000042777647,0.0014562365,0.0004301604,0.00041602447,0.0054888274,0.0000025199604,0.000031415602],"genre_scores_gemma":[0.99786854,0.00020262194,0.000299274,0.0004014556,0.000193145,9.0350784e-7,0.0009878448,0.000010545457,0.000035672565],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998362,0.0002551952,0.00082863163,0.00027029947,0.000118226635,0.0001656527],"domain_scores_gemma":[0.9981052,0.00012409086,0.00066117325,0.0004645016,0.00058490405,0.000060114126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006931837,0.0001551259,0.00030313843,0.00004990273,0.00013275018,0.000049510745,0.00035041306,0.00013204323,0.000023580269],"category_scores_gemma":[0.00063381926,0.000105891944,0.00014256664,0.00023096881,0.00017436524,0.0000123233685,0.000055687415,0.0001573943,4.758734e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008422275,0.00039086258,0.14355496,0.000008383691,0.00022620849,5.25661e-7,0.00047391606,0.000003769417,0.8283403,0.0000011237844,0.024931602,0.0012261295],"study_design_scores_gemma":[0.004016245,0.00033677815,0.50421906,0.00012155701,0.00012539946,0.000002151947,0.00048681698,0.0000060836423,0.48492432,0.00001914644,0.005597606,0.00014485238],"about_ca_topic_score_codex":0.034361027,"about_ca_topic_score_gemma":0.035753634,"teacher_disagreement_score":0.3606641,"about_ca_system_score_codex":0.000042454176,"about_ca_system_score_gemma":0.00038871565,"threshold_uncertainty_score":0.9818413},"labels":[],"label_agreement":null},{"id":"W4413775499","doi":"10.1128/msphere.00441-25","title":"Establishing an <i>ex vivo</i> porcine skin model to investigate the effects of broad-spectrum antiseptic on viable skin microbial communities","year":2025,"lang":"en","type":"article","venue":"mSphere","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Discovery Centre","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Antiseptic; Ex vivo; Microbiology; Biology; Antimicrobial; Microbiome; Pseudomonas aeruginosa; Bioburden; In vivo; Microbial population biology; Bacteria; Medicine; Biotechnology; Pathology; Bioinformatics","score_opus":0.010059267402544899,"score_gpt":0.24722265063293394,"score_spread":0.23716338323038905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413775499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962706,0.000087399516,0.0008228572,0.0004887523,0.00024436365,0.00031423493,0.000020783375,0.000023110137,0.0017279047],"genre_scores_gemma":[0.9941054,0.000017661578,0.00077995076,0.0017134178,0.00008010541,0.000014632756,0.000080616235,0.000018878789,0.0031893437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990432,0.0001695072,0.00024983526,0.00024201091,0.00008395488,0.00021144286],"domain_scores_gemma":[0.9990009,0.00006710996,0.00008059712,0.00071211543,0.00007445592,0.00006478543],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002550491,0.0001533248,0.00017544947,0.000034176584,0.00017253966,0.00011494714,0.0004202252,0.00010244404,0.000029904551],"category_scores_gemma":[0.00021884097,0.00013168305,0.000063584914,0.00017876975,0.00010281068,0.000012310525,0.00017603108,0.00012966906,0.000006077926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051074072,0.000094863746,0.0007414184,0.000117286014,0.000023198096,4.7193856e-7,0.00046968434,0.0013415455,0.9904898,0.00033027196,0.0054543684,0.0008860527],"study_design_scores_gemma":[0.00047274138,0.00024026293,0.0021618567,0.00018454903,0.000028233113,0.0000017405548,0.00041749788,0.0022797573,0.98958856,0.00045683436,0.003986018,0.00018194999],"about_ca_topic_score_codex":0.0008118576,"about_ca_topic_score_gemma":0.0019598713,"teacher_disagreement_score":0.0021652014,"about_ca_system_score_codex":0.000018406514,"about_ca_system_score_gemma":0.000086355176,"threshold_uncertainty_score":0.5369879},"labels":[],"label_agreement":null},{"id":"W4413971421","doi":"10.1016/j.jgar.2025.08.011","title":"Towards an interpretable machine learning model for predicting antimicrobial resistance","year":2025,"lang":"en","type":"article","venue":"Journal of Global Antimicrobial Resistance","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Génome Québec","keywords":"Machine learning; Artificial intelligence; Computer science; Antimicrobial; Resistance (ecology); Biology; Microbiology; Ecology","score_opus":0.01128433755005302,"score_gpt":0.2790724936878123,"score_spread":0.26778815613775925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413971421","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.877809,0.0005091685,0.11777814,0.0010107134,0.0007723554,0.000258805,0.00022557695,0.000027551956,0.0016087075],"genre_scores_gemma":[0.9696131,0.000106272964,0.024978625,0.00045089217,0.00025153224,0.0000029061641,0.000058530826,0.000018024522,0.004520142],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982534,0.00011846829,0.0007714977,0.0003865545,0.00013964147,0.0003304257],"domain_scores_gemma":[0.99836075,0.000021960064,0.00053891615,0.00028969013,0.00068675843,0.00010194967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075303053,0.00021273596,0.0003489774,0.000052272317,0.00027250644,0.00016710747,0.00048316707,0.00017122805,0.0000047437447],"category_scores_gemma":[0.0009972521,0.00021476383,0.00024117957,0.00021195626,0.000095042014,0.000043655164,0.00010805277,0.00020470125,8.047239e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021847691,0.00014435698,0.0041798917,0.00023396546,0.00008726688,0.0000026873226,0.00005125691,0.0013790042,0.9791658,0.00047805806,0.011671231,0.00042173063],"study_design_scores_gemma":[0.013423018,0.0011618604,0.022575492,0.005149156,0.0008196169,0.00017154285,0.0003323988,0.059422042,0.74567807,0.00485847,0.14376935,0.0026389693],"about_ca_topic_score_codex":0.000019488507,"about_ca_topic_score_gemma":0.0011198716,"teacher_disagreement_score":0.23348771,"about_ca_system_score_codex":0.00012627701,"about_ca_system_score_gemma":0.0004524197,"threshold_uncertainty_score":0.8757815},"labels":[],"label_agreement":null},{"id":"W4414017252","doi":"10.1128/jcm.00208-25","title":"Enhancing blood culture volume with ultrathin-wall cannula devices","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Becton Dickinson (Canada); Lakeridge Health","funders":"","keywords":"Vacutainer; Blood volume; Blood culture; Medicine; Volume (thermodynamics); Cannula; Odds ratio; Surgery; Animal science; Internal medicine; Biology; Microbiology","score_opus":0.01498966830345308,"score_gpt":0.3241047670577599,"score_spread":0.30911509875430687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414017252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996703,0.0006419872,0.0007208801,0.0008606972,0.00064161123,0.000076470795,0.000007794818,0.0000061313626,0.0003413918],"genre_scores_gemma":[0.9915619,0.00014794228,0.003372813,0.0017643425,0.0004307849,0.0000011435695,0.000032637403,0.000008345229,0.002680116],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982364,0.00026980898,0.0010334947,0.00025408383,0.000031850872,0.00017432564],"domain_scores_gemma":[0.9985331,0.000085461965,0.00058889005,0.0002264302,0.00048700252,0.00007908565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010457342,0.00012570496,0.00038398238,0.000036040376,0.00006384267,0.000034047844,0.00028675055,0.0003158189,0.000032758107],"category_scores_gemma":[0.0011608298,0.00008966189,0.00018753283,0.0000930137,0.00014995343,0.000006680471,0.00005172503,0.00032829557,0.0000066913453],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020890421,0.00019045032,0.055359054,0.000021994465,0.00019671225,0.0000056946574,0.0000313949,0.000003268576,0.94007766,0.00002519302,0.0033206453,0.00055901776],"study_design_scores_gemma":[0.0046054907,0.0028672141,0.08053078,0.0003008763,0.000418513,0.0007661358,0.0002976388,0.000006063176,0.33892506,0.00012370998,0.57073295,0.00042559832],"about_ca_topic_score_codex":0.000010949105,"about_ca_topic_score_gemma":0.00030441803,"teacher_disagreement_score":0.6011526,"about_ca_system_score_codex":0.000007476537,"about_ca_system_score_gemma":0.0003208785,"threshold_uncertainty_score":0.36563057},"labels":[],"label_agreement":null},{"id":"W4414051416","doi":"10.2196/72842","title":"Evaluating the Effect of a Molecular Point-of-Care Test on Acute Respiratory Infections in General Practice: Protocol for a Cluster Randomized Trial","year":2025,"lang":"en","type":"article","venue":"JMIR Research Protocols","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Syddansk Universitet","keywords":"Randomized controlled trial; Protocol (science); Cluster (spacecraft); Test (biology); Respiratory system; Cluster randomised controlled trial; Randomization","score_opus":0.1318292085778778,"score_gpt":0.5968597532326879,"score_spread":0.4650305446548101,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414051416","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08243913,0.0000015748069,0.00016597017,0.00026372276,0.000012209498,0.9164698,0.00001331541,0.000008272219,0.00062601303],"genre_scores_gemma":[0.0129831415,6.992145e-8,0.0004674956,0.00007312853,0.000088470995,0.98616284,0.000014762037,0.000016657354,0.00019341409],"study_design_codex":"bench_or_experimental","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99405783,0.0042406395,0.0006855191,0.0003949202,0.00035305627,0.00026805393],"domain_scores_gemma":[0.99540097,0.0028168336,0.00026949783,0.0006532636,0.0008227288,0.000036736074],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.009946939,0.0001433016,0.00036248632,0.00019273417,0.00014631217,0.00007217667,0.00031121218,0.00016651668,0.000010697341],"category_scores_gemma":[0.028421948,0.00009834965,0.00022872427,0.00039865327,0.0002430395,0.00001212121,0.00018770309,0.0002952535,0.0000014194542],"study_design_candidate":"randomized_trial","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.46684143,0.00035835957,0.00022414234,0.000659671,0.00004682274,3.8398665e-7,0.00006236197,0.0000354696,0.52921593,0.00012029191,0.00046939956,0.0019657407],"study_design_scores_gemma":[0.5393627,0.018167814,0.00006836168,0.0008857346,0.000016794123,7.293584e-7,0.00004352691,0.0003256724,0.43087184,0.00013741819,0.010012384,0.00010703366],"about_ca_topic_score_codex":0.000014667588,"about_ca_topic_score_gemma":0.0000133955,"teacher_disagreement_score":0.09834408,"about_ca_system_score_codex":0.000052275787,"about_ca_system_score_gemma":0.00046966158,"threshold_uncertainty_score":0.9797621},"labels":[],"label_agreement":null},{"id":"W4414370428","doi":"10.1093/jac/dkaf332","title":"Modification of antimicrobial susceptibility testing methods","year":2025,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nexen (Canada)","funders":"","keywords":"Antimicrobial; Broth microdilution; Minimum inhibitory concentration; Clinical microbiology; Antibiotics; Antibiotic resistance","score_opus":0.02894253055983262,"score_gpt":0.34478053926613345,"score_spread":0.31583800870630085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414370428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96793604,0.0000663376,0.030190414,0.0007549023,0.0005167683,0.00015465954,0.000008969011,0.000009497001,0.00036243576],"genre_scores_gemma":[0.9151873,0.000078667494,0.0837615,0.00052136066,0.00020133505,6.341827e-7,0.000014693748,0.000016418911,0.00021811653],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983657,0.00021565026,0.00089456246,0.0002555982,0.00009371475,0.00017480266],"domain_scores_gemma":[0.9979554,0.000073014424,0.0007092307,0.00037790983,0.000835889,0.000048577258],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013357822,0.00015896976,0.0003487579,0.00014232952,0.00007789376,0.000045961602,0.00034443478,0.00017200965,0.000022948543],"category_scores_gemma":[0.0007747447,0.0001535295,0.0002257598,0.00032079255,0.00014050634,0.000015625465,0.000050685947,0.00015599812,0.0000011194528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026905068,0.0002262096,0.006387853,0.00007618643,0.00007641057,3.7720432e-7,0.00006471645,0.000048785107,0.9768679,0.000026036663,0.0032554076,0.012701079],"study_design_scores_gemma":[0.0009572736,0.000101678954,0.01089021,0.000092417264,0.00003014187,0.000023515931,0.000031337684,0.00006161722,0.9844258,0.000067875655,0.0031934965,0.00012467442],"about_ca_topic_score_codex":0.000023961347,"about_ca_topic_score_gemma":0.000007508489,"teacher_disagreement_score":0.053571083,"about_ca_system_score_codex":0.000033119304,"about_ca_system_score_gemma":0.00026863822,"threshold_uncertainty_score":0.62607515},"labels":[],"label_agreement":null},{"id":"W4414572746","doi":"10.1016/j.chom.2025.09.010","title":"A Bacteroides fragilis protease activates host PAR2 to induce intestinal pain and inflammation","year":2025,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research; Deutsche Forschungsgemeinschaft; Takeda Pharmaceuticals U.S.A.; Fonds der Chemischen Industrie; National Institutes of Health","keywords":"Proteases; Bacteroides fragilis; Inflammation; Protease; Downregulation and upregulation; Irritable bowel syndrome; Proteolysis; Secretion; Serine protease; Microbiome","score_opus":0.007557320570115789,"score_gpt":0.23731936955283414,"score_spread":0.22976204898271835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414572746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99687797,0.00010648345,0.0013850869,0.00068262627,0.00009300184,0.00044611993,0.000010881541,0.000027484952,0.0003703201],"genre_scores_gemma":[0.9959596,0.000011092962,0.0017468164,0.0005101869,0.00009737066,0.000049249044,0.00010901328,0.000013089266,0.0015036025],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990136,0.00013148229,0.00023662104,0.00039262226,0.00004418669,0.0001814759],"domain_scores_gemma":[0.9993613,0.00004439993,0.00007649533,0.00029558645,0.00013581343,0.000086399596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040481403,0.00014922503,0.000118342396,0.00006885768,0.00011733431,0.00012606666,0.00013967267,0.00011192394,0.00002717356],"category_scores_gemma":[0.0008789514,0.00015528347,0.00003591389,0.00014122036,0.000053141415,0.000010005053,0.00016749176,0.000100513804,0.00001666618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049414244,0.000041314812,0.011692769,0.000081238366,0.000008371168,7.0960334e-7,0.00014837166,6.062416e-7,0.9813594,0.000009053228,0.0009772031,0.0056315004],"study_design_scores_gemma":[0.00022976301,0.00011814909,0.032973688,0.00007761624,0.000009805941,0.0000024527683,0.0001648576,0.000018069251,0.9476748,0.000020393521,0.01855239,0.00015799646],"about_ca_topic_score_codex":0.000075407195,"about_ca_topic_score_gemma":0.00004812394,"teacher_disagreement_score":0.03368463,"about_ca_system_score_codex":0.000021901704,"about_ca_system_score_gemma":0.00007257351,"threshold_uncertainty_score":0.6332276},"labels":[],"label_agreement":null},{"id":"W4414630387","doi":"10.3138/jammi-2025-0509","title":"Canada-wide bloodstream infectious diseases surveillance: Quantum leap or a baby step toward a comprehensive electronic national infections surveillance system?","year":2025,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Manitoba; Queen's University","funders":"","keywords":"Electronic surveillance; Infectious disease (medical specialty); MEDLINE; Disease surveillance","score_opus":0.004375952812337952,"score_gpt":0.2273802211369049,"score_spread":0.22300426832456693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414630387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925956,0.0008507966,0.00012328812,0.004206274,0.001554248,0.00017684624,0.00039204312,0.000008794677,0.000092088754],"genre_scores_gemma":[0.99801326,0.00023022683,0.0000014267181,0.0013120739,0.00015284817,0.0000068293903,0.00006942305,0.0000069998314,0.00020691672],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981492,0.0005518592,0.0005738242,0.00019112024,0.00030450925,0.00022946172],"domain_scores_gemma":[0.99758935,0.00048778087,0.0007016694,0.00013872549,0.00091743807,0.00016502269],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005746606,0.00014429603,0.00032576808,0.000059200684,0.00020622982,0.000022358103,0.00021599654,0.00016302419,0.000023057146],"category_scores_gemma":[0.005901613,0.00010926467,0.00011641185,0.00021482244,0.0000919822,0.000008552115,0.00009131179,0.0002641698,1.518204e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016041068,0.00016042539,0.9121236,0.00019519721,0.0006262023,0.0000050878025,0.0000069255257,0.0001070705,0.007909115,0.00073332986,0.07782193,0.00015066046],"study_design_scores_gemma":[0.0025984498,0.0002190354,0.89660454,0.00018267312,0.00015210643,0.00013655209,0.000116647694,0.0001463496,0.00052641664,0.00012211836,0.098935276,0.0002598235],"about_ca_topic_score_codex":0.3269249,"about_ca_topic_score_gemma":0.94904083,"teacher_disagreement_score":0.62211597,"about_ca_system_score_codex":0.0009051232,"about_ca_system_score_gemma":0.014466539,"threshold_uncertainty_score":0.9911205},"labels":[],"label_agreement":null},{"id":"W4414664142","doi":"10.1099/acmi.0.001122.v1","title":"Antimicrobial susceptibility and distribution trends among AmpC-producing Enterobacterales at a regional health authority in British Columbia: a 5-year retrospective review","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; Providence Health Care; Royal Jubilee Hospital; University of British Columbia","funders":"","keywords":"Cefepime; Meropenem; Ceftriaxone; Minimum inhibitory concentration; Distribution (mathematics); Carbapenem","score_opus":0.01121692135004997,"score_gpt":0.2683253272854445,"score_spread":0.2571084059353945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414664142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99693596,0.00080687355,0.000090423106,0.001463984,0.0001279436,0.0003211841,0.00012514513,0.000027677563,0.0001007928],"genre_scores_gemma":[0.9933215,0.0017131623,0.00019148216,0.0005232262,0.000056645982,0.000017030581,0.0013335572,0.000007190294,0.002836249],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99826044,0.00022664396,0.00044344613,0.00074904197,0.000079726924,0.00024072979],"domain_scores_gemma":[0.99931204,0.000010909427,0.00012769939,0.00035119973,0.00012503075,0.0000731001],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008196756,0.0001071012,0.00028259633,0.000025995954,0.00022241831,0.0001519425,0.00010041997,0.00010880874,0.000087854256],"category_scores_gemma":[0.00037123062,0.00016286365,0.00007988113,0.0002538513,0.00015509577,0.000013474563,0.0001758181,0.00012787132,0.0000010895714],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018887698,0.000100069934,0.9402429,0.00033154563,0.000013037462,8.667009e-7,0.00002248229,1.15594545e-7,0.024497358,0.000013657311,0.031662066,0.0030970143],"study_design_scores_gemma":[0.00039507772,0.0000450955,0.9966319,0.0006368999,0.0000088375255,0.00001038621,0.00002346876,0.000007672872,0.00034053603,0.00003319379,0.0017370947,0.00012983731],"about_ca_topic_score_codex":0.014540901,"about_ca_topic_score_gemma":0.4342298,"teacher_disagreement_score":0.4196889,"about_ca_system_score_codex":0.00022423922,"about_ca_system_score_gemma":0.000086573134,"threshold_uncertainty_score":0.9920214},"labels":[],"label_agreement":null},{"id":"W4414854424","doi":"10.1001/jamanetworkopen.2025.35580","title":"Rapid Diagnostic Stewardship and Blood Culture Use in a Pediatric Medical Center","year":2025,"lang":"en","type":"article","venue":"JAMA Network Open","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"Jazz Pharmaceuticals","keywords":"Blood culture; Stewardship (theology); Antimicrobial stewardship; Bacteremia; Pooling; Intensivist","score_opus":0.01712345038949144,"score_gpt":0.2759245556816482,"score_spread":0.2588011052921568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414854424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956404,0.0012051949,0.00003730535,0.0007920542,0.00023683456,0.00035477814,0.000007972623,0.0000090122585,0.0017164353],"genre_scores_gemma":[0.9946042,0.0018488559,0.00040475733,0.0013425805,0.00047177993,0.000037484595,0.00013739632,0.000008403076,0.0011445668],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99892235,0.00020531355,0.00024442337,0.00034632022,0.0000847261,0.00019687314],"domain_scores_gemma":[0.99941546,0.00013731829,0.000051420902,0.00026144707,0.00004907923,0.00008527982],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006535936,0.00010158203,0.00013760668,0.000026295216,0.00006480796,0.0002846297,0.00032094005,0.00021433299,0.000057703077],"category_scores_gemma":[0.0024892518,0.000093174596,0.000028940225,0.00018634347,0.000033379936,0.0000140024495,0.0005095636,0.00014810011,0.000004030422],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007278306,0.00013544518,0.9755186,0.00003434724,0.000024194682,0.000010308544,0.000050341874,0.0000055001124,0.0008178557,0.00014066618,0.017759403,0.0054305736],"study_design_scores_gemma":[0.0019233556,0.00007171561,0.95663404,0.00012628098,0.00003028931,0.000009771103,0.000031888456,0.000059214635,0.0002575996,0.00015622545,0.04052985,0.00016978633],"about_ca_topic_score_codex":0.00006708924,"about_ca_topic_score_gemma":0.0006735337,"teacher_disagreement_score":0.022770448,"about_ca_system_score_codex":0.0000063062853,"about_ca_system_score_gemma":0.00008484258,"threshold_uncertainty_score":0.379955},"labels":[],"label_agreement":null},{"id":"W4415019746","doi":"10.1111/trf.18441","title":"How do I interpret transfusion transmissible infectious disease testing in a low‐risk donor population?","year":2025,"lang":"en","type":"article","venue":"Transfusion","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Canadian Blood Services; Women and Children’s Health Research Institute; University of Alberta","funders":"","keywords":"Infectious disease (medical specialty); Serology; Disease; Transfusion medicine; Blood transfusion; Transfusion reaction","score_opus":0.008586274290454821,"score_gpt":0.2490447934812999,"score_spread":0.24045851919084507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415019746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98187256,0.00023908743,0.01614007,0.00044066622,0.0002686251,0.00050830684,0.000024498764,0.0000644321,0.0004417842],"genre_scores_gemma":[0.9986432,0.00028819733,0.00033124303,0.00007245768,0.000065820306,0.000043338925,0.00013649408,0.000018855566,0.00040035514],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99864197,0.00016651386,0.00032673526,0.00053323427,0.00010856681,0.00022298617],"domain_scores_gemma":[0.9993841,0.00004337518,0.000041561016,0.0003485691,0.00008173903,0.000100660785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003009741,0.00018570469,0.00017233705,0.00015536496,0.00017775701,0.000128578,0.00014671305,0.00014829922,0.000029765346],"category_scores_gemma":[0.0003362786,0.00018842041,0.00011452867,0.00041333615,0.000035897145,0.000019541043,0.000021650007,0.00017248269,0.0000021862497],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025352,0.00018618979,0.35335633,0.00015118804,0.000011493897,0.0000022346499,0.0001855103,0.00017636806,0.61363477,0.00007417642,0.000024251738,0.03194401],"study_design_scores_gemma":[0.002757923,0.0002086963,0.952495,0.0006855278,0.0000901581,0.000004354123,0.00017926475,0.00345367,0.03719877,0.0013078009,0.0010907205,0.00052815303],"about_ca_topic_score_codex":0.0007044082,"about_ca_topic_score_gemma":0.0016723273,"teacher_disagreement_score":0.5991386,"about_ca_system_score_codex":0.00003699356,"about_ca_system_score_gemma":0.00007537249,"threshold_uncertainty_score":0.76835614},"labels":[],"label_agreement":null},{"id":"W4415129430","doi":"10.1128/aac.01391-25","title":"Reply to Datta, “Is static or cidal antibiotic falsifiable?”","year":2025,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre; Université de Sherbrooke; University of Alberta","funders":"","keywords":"Antibiotics; Anti-Infective Agents; Antibacterial agent; Aminoglycoside; Antibiotic resistance","score_opus":0.016109353617910993,"score_gpt":0.2938092965751362,"score_spread":0.2776999429572252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415129430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98550606,0.000014202755,0.0008309232,0.012601267,0.00024438408,0.00028107894,0.000036222562,0.000022520122,0.00046332894],"genre_scores_gemma":[0.8742485,0.0002845393,0.0014850163,0.11319969,0.00009400041,0.0000033545516,0.00007963515,0.000019950323,0.010585293],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99898607,0.000032141954,0.000245908,0.00046211173,0.000056669738,0.00021709326],"domain_scores_gemma":[0.99943525,0.000009675223,0.00005403317,0.00035997832,0.00006761822,0.000073475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013657258,0.00015411724,0.00016581881,0.000054496828,0.00013251604,0.00012256108,0.00016327483,0.00008115506,0.00020208291],"category_scores_gemma":[0.00005417028,0.00013583149,0.000048759623,0.00015628655,0.00005128516,0.000006370265,0.000079972364,0.000049702478,0.000020070658],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015676868,0.00009404591,0.008900382,0.000052974076,0.000057424622,0.0000013163469,0.00011958587,0.0000013743368,0.60147,0.000011938122,0.3818776,0.0072565903],"study_design_scores_gemma":[0.0009291131,0.00012588115,0.0330567,0.00007025292,0.00001903724,0.000006507985,0.00006955515,0.000038865775,0.38732103,0.000027169883,0.57808983,0.00024605865],"about_ca_topic_score_codex":0.0000964697,"about_ca_topic_score_gemma":0.000024372428,"teacher_disagreement_score":0.21414898,"about_ca_system_score_codex":0.000010197135,"about_ca_system_score_gemma":0.00006172448,"threshold_uncertainty_score":0.5539047},"labels":[],"label_agreement":null},{"id":"W4415268940","doi":"10.1101/2025.10.15.682631","title":"IDBac: an open-access web platform to identify bacteria and analyze relationships in culture collections using MALDI-TOF mass spectrometry","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Science Foundation Graduate Research Fellowship Program; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Identification (biology); Subspecies; Metadata; Bacteria; Web application; Metabolite","score_opus":0.05488303216128337,"score_gpt":0.3331743381509265,"score_spread":0.27829130598964313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415268940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99553466,0.00018990274,0.0017353857,0.0000967947,0.00077530945,0.0010422596,0.0005013563,0.000072743394,0.00005158189],"genre_scores_gemma":[0.97877485,0.00013742676,0.020369811,0.00013062998,0.00027555568,0.00012666229,0.000013637512,0.00005537388,0.00011604195],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9971187,0.0002625189,0.00068535,0.0013548548,0.00017067547,0.0004078878],"domain_scores_gemma":[0.9976854,0.000026618749,0.0003208337,0.0012536307,0.00042345555,0.00029011565],"candidate_categories":["metaepi_narrow","scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.00096711377,0.0004344321,0.00047768344,0.0006009009,0.0004384537,0.002231362,0.00113951,0.0006853333,0.0000563526],"category_scores_gemma":[0.0007178448,0.0005187102,0.00007582214,0.0014926733,0.000072587674,0.00010788284,0.0017559225,0.000623371,0.000004917054],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058890466,0.00010516168,0.038423486,0.00013520636,0.00007077945,0.0000047410563,0.000014173029,0.000096525284,0.96071905,0.0001082606,0.00026303064,6.918135e-7],"study_design_scores_gemma":[0.0009942946,0.0001264174,0.6693177,0.000539711,0.00016647234,1.7321379e-7,0.00005010543,0.0011875975,0.32217658,0.00002865333,0.0041056927,0.0013065673],"about_ca_topic_score_codex":0.0002656831,"about_ca_topic_score_gemma":0.00040047982,"teacher_disagreement_score":0.6385425,"about_ca_system_score_codex":0.0002552547,"about_ca_system_score_gemma":0.00080198934,"threshold_uncertainty_score":0.9997265},"labels":[],"label_agreement":null},{"id":"W4415396204","doi":"10.1101/2025.10.17.25338235","title":"Novel blood protein biomarkers for distinguishing bacterial from non-bacterial infection in children: a case–control study","year":2025,"lang":"","type":"preprint","venue":"medRxiv","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Queen's University; Public Health Agency; Hospital for Sick Children; Queen's University Belfast","keywords":"Biomarker; C-reactive protein; Diagnostic biomarker; Prospective cohort study; Antibiotics; Inflammation; Biomarker discovery; Diagnostic accuracy","score_opus":0.014298426097062895,"score_gpt":0.2677493265013139,"score_spread":0.253450900404251,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415396204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9747845,0.00004563948,0.005296663,0.000076331526,0.004613284,0.010308128,0.004774089,0.000058298236,0.000043053034],"genre_scores_gemma":[0.99002117,0.000014866538,0.001761358,0.000031043095,0.0035527232,0.0017099809,0.0026958184,0.000086757806,0.00012631044],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99324065,0.0008053579,0.0021091488,0.0027755152,0.00026837538,0.0008009306],"domain_scores_gemma":[0.9963579,0.0002049776,0.001108135,0.001607338,0.00049357483,0.00022803181],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0023416106,0.001005798,0.0011856218,0.00031421,0.00046108587,0.0007893089,0.0006932142,0.0011834173,0.00014295691],"category_scores_gemma":[0.004634604,0.00117241,0.0005603731,0.00033512723,0.00015094185,0.000026329844,0.00082766736,0.0006651842,0.000004378114],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011660303,0.0018257543,0.3587145,0.00016500134,0.0011599293,0.000020885624,0.00029046775,0.000028271432,0.63492674,0.0000012891593,0.000007127259,0.0016940025],"study_design_scores_gemma":[0.01886551,0.0010365441,0.9025176,0.0006793846,0.00142618,0.00007705785,0.0001644111,0.0011416449,0.07222619,0.000039148068,0.00022383881,0.0016024772],"about_ca_topic_score_codex":0.0118687805,"about_ca_topic_score_gemma":0.010220701,"teacher_disagreement_score":0.56270057,"about_ca_system_score_codex":0.00014821294,"about_ca_system_score_gemma":0.00068001356,"threshold_uncertainty_score":0.9990726},"labels":[],"label_agreement":null},{"id":"W4415436813","doi":"10.1099/acmi.0.001015.v3","title":"Notification of bacterial strains made available by the UK National Collection of Type Cultures in 2023","year":2025,"lang":"en","type":"article","venue":"Access Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bell (Canada)","funders":"University of Central Florida","keywords":"Metadata; Public health; Function (biology); Accession number (library science); Resource (disambiguation); Public access","score_opus":0.022481082684662732,"score_gpt":0.30776905344779937,"score_spread":0.2852879707631366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415436813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980003,0.00013897434,0.00006095047,0.00021788574,0.00036027454,0.00016057758,0.00008004707,0.000004062473,0.0009769147],"genre_scores_gemma":[0.9965261,0.00004562745,0.000060497543,0.000077601246,0.000033871587,0.000009717772,0.0007460916,0.000003783761,0.0024966637],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993405,0.0000982843,0.000273301,0.00018325845,0.00002347847,0.00008119203],"domain_scores_gemma":[0.99946105,0.000025668369,0.0001320073,0.00014793359,0.00022608368,0.0000072752364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024305764,0.00006044126,0.000100447476,0.000049681483,0.000039700866,0.000014412783,0.00022361499,0.000127841,0.00020916954],"category_scores_gemma":[0.00029587524,0.0000501731,0.000027872267,0.00022862692,0.000104506595,0.0000048158686,0.000067608824,0.000047972513,0.000004683729],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006214439,0.000045511664,0.007326954,0.000014727735,0.000017797687,1.3964668e-8,0.000022315611,0.000009197515,0.95393103,0.00010424259,0.038373545,0.00009254407],"study_design_scores_gemma":[0.00034384252,0.000040153536,0.035817705,0.000011434802,0.0000076155316,0.000001721986,0.000041070765,0.0000148493,0.95175046,0.000092581184,0.011817002,0.00006154816],"about_ca_topic_score_codex":0.00022530084,"about_ca_topic_score_gemma":0.00050732633,"teacher_disagreement_score":0.02849075,"about_ca_system_score_codex":0.000017616909,"about_ca_system_score_gemma":0.00012582532,"threshold_uncertainty_score":0.22902597},"labels":[],"label_agreement":null},{"id":"W4415666730","doi":"10.1038/s41598-025-21406-7","title":"Real-time PCR assay design and validation for Prevotella bivia, Peptostreptococcus anaerobius, and Dialister micraerophilus, bacteria associated with increased HIV susceptibility","year":2025,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Fogarty International Center; National Institutes of Health; George Washington University","keywords":"Peptostreptococcus; Prevotella; Bacteria; Gardnerella vaginalis; Anaerobic bacteria; Immune system; In vitro","score_opus":0.013109225067319971,"score_gpt":0.24634694452513015,"score_spread":0.2332377194578102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415666730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99550873,0.00003351319,0.0022699153,0.00012449973,0.00051266694,0.0013501695,0.000032117547,0.000047587986,0.0001207967],"genre_scores_gemma":[0.9897768,0.0000090837875,0.003959166,0.000021542146,0.000048572794,0.000083901294,0.0017035683,0.000020749303,0.004376648],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99755526,0.0003557338,0.0005175274,0.0011502681,0.00014630308,0.0002749077],"domain_scores_gemma":[0.9982579,0.0001218564,0.00033629045,0.0007547045,0.0004102217,0.000119041964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031156004,0.00021340357,0.00025008942,0.00009842177,0.0003712741,0.0005006147,0.000098636585,0.00017618436,0.00003241803],"category_scores_gemma":[0.0014649684,0.00019596927,0.000058098096,0.00022490557,0.00033173148,0.000025218389,0.00010753142,0.000056773,0.0000014394647],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000954812,0.00008624138,0.03478356,0.000048066704,0.000044539247,0.000002987242,0.000052319843,0.0000056375484,0.9608792,0.0000066364664,0.0036201763,0.00037516915],"study_design_scores_gemma":[0.0012646808,0.00027826222,0.16181053,0.00017593731,0.0001840631,0.000034082732,0.0000614951,0.0005784355,0.82884324,0.0009061906,0.0052688085,0.0005942889],"about_ca_topic_score_codex":0.000057146215,"about_ca_topic_score_gemma":0.00008147071,"teacher_disagreement_score":0.13203596,"about_ca_system_score_codex":0.000043809265,"about_ca_system_score_gemma":0.00022425629,"threshold_uncertainty_score":0.7991395},"labels":[],"label_agreement":null},{"id":"W4416287387","doi":"10.1371/journal.pone.0336988","title":"Evaluation of a commercial pressure cooker for the preparation of agar media for a diagnostic microbiology laboratory","year":2025,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Cooker; Agar; Autoclave; Sterilization (economics); Agar plate; Hemolysis; Geobacillus stearothermophilus; Clinical microbiology","score_opus":0.055825964156008656,"score_gpt":0.31613924516447106,"score_spread":0.2603132810084624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416287387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99575055,0.0008450641,0.0014904734,0.0002302973,0.0000969489,0.0012326124,0.00031427684,0.0000037688994,0.000035995923],"genre_scores_gemma":[0.99844825,0.000022072005,0.0007194353,0.00005963522,0.000077561424,0.00028189542,0.0003177691,0.0000043293385,0.000069029746],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994454,0.000109781606,0.00019815135,0.0001258387,0.00006268193,0.000058191938],"domain_scores_gemma":[0.99818325,0.00039395233,0.00011361886,0.00019640395,0.0011045815,0.0000081804055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008496275,0.00004578987,0.00010564335,0.000017578479,0.00003934806,0.0000049502996,0.00008602873,0.000086209606,0.00000999625],"category_scores_gemma":[0.0061234194,0.000039256418,0.00003618143,0.000045980756,0.000057003057,0.0000020352766,0.000021264277,0.000020188714,2.6618724e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012875964,0.00026186928,0.0010337017,0.00013110493,0.00020445783,1.8615615e-9,0.00009527177,0.000019281302,0.99639916,0.00009816224,0.0010037175,0.0006245089],"study_design_scores_gemma":[0.0007939322,0.00013448687,0.00902579,0.00005057298,0.0008163677,4.069886e-8,0.00003491301,0.0015742354,0.98596454,0.00016596346,0.0013916922,0.000047450678],"about_ca_topic_score_codex":0.000006536385,"about_ca_topic_score_gemma":0.00014098379,"teacher_disagreement_score":0.010434608,"about_ca_system_score_codex":0.0000059666845,"about_ca_system_score_gemma":0.00014036312,"threshold_uncertainty_score":0.7330747},"labels":[],"label_agreement":null},{"id":"W4416823359","doi":"10.1093/jacamr/dlaf226","title":"Performance of direct-from-blood culture bottle rapid phenotypic antimicrobial susceptibility testing for Gram-negative bacteremia at a children’s hospital","year":2025,"lang":"en","type":"article","venue":"JAC-Antimicrobial Resistance","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Hospital for Sick Children","keywords":"Antimicrobial stewardship; Bacteremia; Antimicrobial; Phenotype; Antibiotics; Blood culture","score_opus":0.008046038277741554,"score_gpt":0.23001678343928408,"score_spread":0.22197074516154253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416823359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960816,0.00015371044,0.00010878041,0.00015233895,0.00052536646,0.00093011395,0.00089707866,0.000057857396,0.0010931593],"genre_scores_gemma":[0.98071766,0.00006322991,0.014908595,0.00017652276,0.00026658233,0.000037362966,0.0007794423,0.00003762476,0.0030129894],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975354,0.00012730305,0.0007209045,0.0010231711,0.00013039612,0.00046280338],"domain_scores_gemma":[0.9979425,0.00013834186,0.00045008006,0.00082448206,0.000562082,0.000082521314],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032619192,0.000368,0.0004928865,0.000065144435,0.00037276855,0.0000818642,0.0004935166,0.0003068519,0.000039085175],"category_scores_gemma":[0.0017008306,0.00038040552,0.0002609707,0.0003301948,0.00029967102,0.000026299203,0.00024359816,0.00017319799,0.000006940415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000641054,0.00026665427,0.1159104,0.0002405368,0.00013839277,3.1402297e-7,0.00013484797,0.0000060639904,0.8716216,0.000010661571,0.010508675,0.0005208171],"study_design_scores_gemma":[0.0013129477,0.00019112338,0.24051325,0.0002555831,0.00011843162,0.0000014013868,0.00001777185,0.000020054424,0.7561499,0.000019721108,0.0010428724,0.00035697076],"about_ca_topic_score_codex":0.000120729506,"about_ca_topic_score_gemma":0.0005504069,"teacher_disagreement_score":0.124602854,"about_ca_system_score_codex":0.00008636353,"about_ca_system_score_gemma":0.00020218195,"threshold_uncertainty_score":0.99986476},"labels":[],"label_agreement":null},{"id":"W4417030949","doi":"10.1136/bmjopen-2025-101588","title":"Assessing the feasibility of a platform trial for Gram negative bloodstream infections: results from the vanguard phase of BALANCE+","year":2025,"lang":"en","type":"article","venue":"BMJ Open","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Niagara Health System; University of Calgary; Memorial University of Newfoundland; University Health Network; Health Sciences Centre; Ottawa Hospital; McGill University Health Centre; University of Ottawa; North York General Hospital; Sunnybrook Health Science Centre; Sinai Health System; Toronto East General Hospital; University of Toronto","funders":"Canadian Institutes of Health Research; Clinical Trials Fund, Canadian Institutes of Health Research","keywords":"Vanguard; Phase (matter); Gram; Bloodstream infection; MEDLINE","score_opus":0.17755770532497991,"score_gpt":0.4914309642801779,"score_spread":0.313873258955198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417030949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920036,0.00001672188,0.0007073594,0.00049384194,0.00026894565,0.005118353,0.0003332035,0.000004626151,0.0010533474],"genre_scores_gemma":[0.9982437,0.0000029059172,0.00080554374,0.000088421955,0.00012482454,0.0003209012,0.00024929043,0.000004274973,0.0001601439],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990013,0.00014691551,0.00046425223,0.00023677513,0.00006716954,0.00008358458],"domain_scores_gemma":[0.9983004,0.00050777924,0.00033108832,0.000644257,0.000201768,0.000014747422],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014159345,0.00007549116,0.00016772017,0.000011106226,0.00013946257,0.00011071367,0.0003802959,0.000069227855,0.00000923696],"category_scores_gemma":[0.005765468,0.000047336205,0.000099117104,0.00011706983,0.00011581105,0.0000145757285,0.0001983381,0.000053743766,3.2045222e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.039471537,0.0022892733,0.015289685,0.00011801977,0.0004934491,2.6482138e-7,0.0014007022,0.000029107017,0.9085182,0.0007193406,0.007852951,0.023817472],"study_design_scores_gemma":[0.17150198,0.0025878625,0.07231809,0.0005114735,0.0003832573,0.0000021951962,0.008811292,0.0011404593,0.726093,0.011097842,0.0050992914,0.00045327694],"about_ca_topic_score_codex":0.00094298826,"about_ca_topic_score_gemma":0.00061323453,"teacher_disagreement_score":0.18242522,"about_ca_system_score_codex":0.00001118328,"about_ca_system_score_gemma":0.0002540284,"threshold_uncertainty_score":0.69022197},"labels":[],"label_agreement":null},{"id":"W4417088222","doi":"10.1093/clinchem/hvaf164","title":"A Culture-Free Lipidomics-Based Screening Test for Uropathogens","year":2025,"lang":"en","type":"article","venue":"Clinical Chemistry","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Island Health; University of Victoria","funders":"National Institutes of Health; Victoria General Hospital Foundation","keywords":"Screening test; Turnaround time; Medical screening; Workflow; Test (biology)","score_opus":0.03379634121833586,"score_gpt":0.35604698127197665,"score_spread":0.3222506400536408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417088222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96291965,0.00026523118,0.029833907,0.001477601,0.0006068016,0.0004504782,0.00028169923,0.00010047438,0.004064168],"genre_scores_gemma":[0.96712875,0.000022077393,0.018763391,0.0015061434,0.0011097011,0.00006976635,0.0007510356,0.00002588514,0.01062323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986786,0.000034407578,0.00050781923,0.0005192741,0.00005944943,0.0002004154],"domain_scores_gemma":[0.9985709,0.00023785196,0.00012328116,0.00076430524,0.00020473076,0.000098914854],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0005707463,0.00014136398,0.00019459006,0.00001016757,0.00011439734,0.000053851025,0.0003951223,0.00030753206,0.00002091558],"category_scores_gemma":[0.011748955,0.0001443453,0.00026380955,0.00008413769,0.0001254561,0.0000020859156,0.00014236814,0.00014252386,0.0000037385148],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012695139,0.00018946522,0.033591703,0.00010797708,0.000026784468,4.7640034e-7,0.000002534691,0.0000044687204,0.94721055,0.000016968084,0.016121263,0.0026008692],"study_design_scores_gemma":[0.0030238687,0.00012632103,0.005436247,0.00006962243,0.000077363366,0.0000021693677,0.000042141397,0.0011740561,0.8041446,0.00031723856,0.18524891,0.00033745213],"about_ca_topic_score_codex":0.0000010742207,"about_ca_topic_score_gemma":0.000002939323,"teacher_disagreement_score":0.16912766,"about_ca_system_score_codex":0.00001059145,"about_ca_system_score_gemma":0.00014714376,"threshold_uncertainty_score":0.9965755},"labels":[],"label_agreement":null},{"id":"W4417169743","doi":"10.1109/icecs66544.2025.11270653","title":"Portable Impedance Microfluidic Platform for 60-Minute Antibiotic Susceptibility Testing","year":2025,"lang":"","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Polytechnique Montréal","funders":"","keywords":"Microfluidics; Electrical impedance; Antibiotics; Metric (unit); Voltage; Focused Impedance Measurement","score_opus":0.032996696416816594,"score_gpt":0.2949973765028447,"score_spread":0.2620006800860281,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417169743","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9630839,0.0045705433,0.015239316,0.00065931835,0.0023316087,0.0021440408,0.00021206353,0.000113038666,0.011646137],"genre_scores_gemma":[0.96746016,0.00034346865,0.007809832,0.00065745966,0.0004180778,0.00003622218,0.00042533557,0.000053160024,0.022796286],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9954749,0.000102323254,0.0014433514,0.0017746335,0.00017811412,0.0010267165],"domain_scores_gemma":[0.9964799,0.00029729237,0.0004176324,0.0015495808,0.0010323789,0.00022316002],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015903983,0.00059284864,0.00063761056,0.0001463287,0.0006970008,0.0003981026,0.0006633241,0.0006325514,0.00014572898],"category_scores_gemma":[0.0038836072,0.00064641645,0.0003972523,0.00066125114,0.0003258117,0.00003267691,0.00040387435,0.00025586324,0.00003369761],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019350511,0.00033048296,0.02797872,0.0008561114,0.00014622208,0.0000018045331,0.00004030557,0.000004753615,0.92987347,0.0004566861,0.011632896,0.028485034],"study_design_scores_gemma":[0.0022926806,0.0005501877,0.024436545,0.00038174223,0.00029230493,0.000015712278,0.00055216305,0.0026039232,0.9061242,0.0008787866,0.060787193,0.0010845606],"about_ca_topic_score_codex":0.00023365466,"about_ca_topic_score_gemma":0.00031696665,"teacher_disagreement_score":0.049154297,"about_ca_system_score_codex":0.00015575728,"about_ca_system_score_gemma":0.0011018253,"threshold_uncertainty_score":0.9995987},"labels":[],"label_agreement":null},{"id":"W4417296754","doi":"10.1093/pch/pxaf116.118","title":"118 Association Between Time to Gram Stain Positivity and True Bacteremia in Pediatric Emergency Department Patients: A Retrospective Cohort Study","year":2025,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal","funders":"","keywords":"Bacteremia; Gram staining; Retrospective cohort study; Blood culture; Emergency department; Cohort; Cohort study","score_opus":0.0048834471735789324,"score_gpt":0.2631972550997886,"score_spread":0.25831380792620967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417296754","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99649316,0.00014394186,0.00008024049,0.00087149604,0.00021245299,0.0017193651,0.00014496966,0.000023698665,0.00031066008],"genre_scores_gemma":[0.99833196,0.00028359893,0.0000951823,0.00022788794,0.00030719757,0.0000646281,0.00047385963,0.000013702821,0.00020198959],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978796,0.00039208023,0.00056485867,0.0005986358,0.00022237666,0.00034240008],"domain_scores_gemma":[0.99906147,0.000045889134,0.0002529361,0.0002797607,0.00020911223,0.00015083322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015612708,0.00016934761,0.00030621787,0.00019251266,0.00019138772,0.00004067168,0.00011612967,0.00012820459,0.00001640995],"category_scores_gemma":[0.0010271661,0.00018950459,0.000049112037,0.00060386484,0.0000062454847,0.000010197335,0.0001458806,0.00018434071,0.000014362462],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001994996,0.00045174354,0.9964949,0.000033554174,0.00003025768,1.7703996e-7,0.00013830115,0.0000011162966,0.00005113589,0.000005753895,0.0016866215,0.0010865245],"study_design_scores_gemma":[0.0006054933,0.00036855126,0.9984242,0.0000044128574,0.00004736125,6.7447566e-8,0.000021309985,0.0000040070704,0.000020432135,0.000049335737,0.00030741567,0.00014745317],"about_ca_topic_score_codex":0.00021867626,"about_ca_topic_score_gemma":0.0005523355,"teacher_disagreement_score":0.0019292957,"about_ca_system_score_codex":0.00052095467,"about_ca_system_score_gemma":0.0001580875,"threshold_uncertainty_score":0.77277726},"labels":[],"label_agreement":null},{"id":"W4417296760","doi":"10.1093/pch/pxaf116.036","title":"36 Management of a positive blood culture in paediatric emergency department: A multicenter case-based survey","year":2025,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; McGill University","funders":"","keywords":"Blood culture; Bacteremia; Dilemma; MEDLINE; Clinical Practice; Emergency department","score_opus":0.011192975793657663,"score_gpt":0.2845361632633141,"score_spread":0.2733431874696564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417296760","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920231,0.0044139735,0.0008036667,0.00046149894,0.0004424399,0.0009162637,0.0003522716,0.00001802478,0.00056875974],"genre_scores_gemma":[0.99526346,0.0020763017,0.001194939,0.0003592368,0.00008926037,0.00003450712,0.00084676215,0.000013207539,0.00012230921],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981308,0.00035206202,0.0006308296,0.0004512565,0.00012566311,0.00030939758],"domain_scores_gemma":[0.99911994,0.000030780404,0.0002410876,0.00035880317,0.00015384828,0.000095521646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008774872,0.00016848627,0.0002229805,0.00017008187,0.000121662,0.00001437129,0.00015947645,0.00012022515,0.000015248523],"category_scores_gemma":[0.00014788029,0.00017275535,0.00010239524,0.0007091151,0.000021546219,0.0000045316324,0.00010392952,0.00014063671,0.0000030625808],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031825597,0.0023386173,0.9862171,0.001278202,0.00018459886,0.00006438813,0.00041441745,0.00009825396,0.0012708615,0.00021675776,0.0037270747,0.0038715033],"study_design_scores_gemma":[0.0025010929,0.00021731757,0.99418837,0.00007374556,0.00009124869,0.000009859801,0.00016286403,0.00014842048,0.0012951585,0.000031164385,0.0010307721,0.00024997993],"about_ca_topic_score_codex":0.00045050366,"about_ca_topic_score_gemma":0.0014965938,"teacher_disagreement_score":0.007971307,"about_ca_system_score_codex":0.000047324218,"about_ca_system_score_gemma":0.0001353211,"threshold_uncertainty_score":0.7044759},"labels":[],"label_agreement":null},{"id":"W4417358446","doi":"10.3390/labmed2040026","title":"Current Antibiotic Susceptibility Test Underestimates Minority Resistance: Implications for High-Risk Infections","year":2025,"lang":"en","type":"article","venue":"LabMed","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"","keywords":"Warrant; Guideline; Antibiotics; Antimicrobial stewardship; Clinical microbiology; Bloodstream infection; Antibiotic resistance","score_opus":0.01745365947105456,"score_gpt":0.30491049237294277,"score_spread":0.2874568329018882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417358446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.986623,0.00037598482,0.009378964,0.0012010343,0.0005750146,0.00072941935,0.00044278515,0.00008438326,0.0005894026],"genre_scores_gemma":[0.9964088,0.00010098392,0.0015588962,0.00005739042,0.00013518728,0.000084582935,0.0005287563,0.000009613215,0.0011157879],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988846,0.00006708855,0.00030152843,0.00047973052,0.000043268916,0.00022377077],"domain_scores_gemma":[0.9987168,0.00018810475,0.000113562885,0.0006381249,0.00028091052,0.00006254743],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030365528,0.0001346965,0.00014329478,0.000051153576,0.00035325397,0.000073330055,0.00017348077,0.00011098581,0.000011002919],"category_scores_gemma":[0.0027157897,0.00014110122,0.00008563444,0.00022768414,0.00010840821,0.00000629946,0.00007247984,0.000093076764,0.000006393768],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031364143,0.00046668647,0.65430677,0.00018497268,0.000035616664,3.1012867e-8,0.000011908073,0.0000062735285,0.3264328,0.0056184907,0.008868949,0.0040361495],"study_design_scores_gemma":[0.0005121681,0.000056533536,0.95436096,0.000024342253,0.000068210386,3.760823e-7,0.000015592252,0.000026141792,0.02712573,0.0068700346,0.01077593,0.0001639885],"about_ca_topic_score_codex":0.00009138297,"about_ca_topic_score_gemma":0.0032352686,"teacher_disagreement_score":0.30005416,"about_ca_system_score_codex":0.000047335627,"about_ca_system_score_gemma":0.00013133588,"threshold_uncertainty_score":0.5753941},"labels":[],"label_agreement":null},{"id":"W4417458415","doi":"10.1371/journal.pbio.3003539","title":"Biased sampling driven by bacterial population structure confounds machine learning prediction of antimicrobial resistance","year":2025,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Bayerisches Staatsministerium für Wissenschaft, Forschung und Kunst","keywords":"Sampling (signal processing); Population; Sample size determination; Confounding; Antibiotic resistance; Sample (material); Sampling bias","score_opus":0.016336248756307795,"score_gpt":0.2588358774812706,"score_spread":0.24249962872496283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417458415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99781585,0.000064600055,0.0009398701,0.000079654485,0.00039089323,0.00014057278,0.00044684665,0.000025867717,0.00009585953],"genre_scores_gemma":[0.9910851,0.000022579055,0.00079023396,0.000053982854,0.00012987257,0.0000036898125,0.007590136,0.000008625394,0.00031578421],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908227,0.00013979185,0.00031100202,0.00030311107,0.000034076733,0.00012974933],"domain_scores_gemma":[0.99950266,0.000026071466,0.00015878923,0.000186028,0.00010428251,0.000022162862],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000100186,0.00010351536,0.00016575331,0.000051488067,0.000097958895,0.000019291658,0.0001105157,0.00021316523,0.000076027885],"category_scores_gemma":[0.00039950377,0.000106384716,0.00004413409,0.000088363464,0.00006577275,0.0000045114834,0.000052913907,0.00009622183,7.557237e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013077367,0.000028131271,0.09509381,0.000040346677,0.0000365289,3.343144e-8,0.000014084858,0.000017535296,0.90415514,0.000068017405,0.00022626384,0.00018932408],"study_design_scores_gemma":[0.0011164097,0.00013258896,0.07450575,0.000074244286,0.000053600477,0.0000013817904,0.000017266253,0.00047245927,0.911186,0.00014498564,0.01210325,0.00019211265],"about_ca_topic_score_codex":0.00007651402,"about_ca_topic_score_gemma":0.00020088321,"teacher_disagreement_score":0.020588065,"about_ca_system_score_codex":0.00001766592,"about_ca_system_score_gemma":0.000032792726,"threshold_uncertainty_score":0.43382427},"labels":[],"label_agreement":null},{"id":"W6901962456","doi":"10.6084/m9.figshare.16821743","title":"Additional file 16 of Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation","year":2021,"lang":"en","type":"other","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Genome; Genetic algorithm; Mitochondrial DNA; Phylogenetics; Genomics; Identification (biology); DNA","score_opus":0.03005390020296877,"score_gpt":0.2559745711580745,"score_spread":0.2259206709551057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901962456","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013822383,0.0004057312,0.0000033938331,0.0000067679894,0.00003452344,0.00021791164,0.98940444,0.0000060188,0.008538949],"genre_scores_gemma":[0.0016353002,0.00009594866,0.0006899997,0.00000916551,0.00022752784,0.000029673349,0.96298385,0.000030286368,0.034298256],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989855,0.000096555385,0.00040211133,0.00029677452,0.00014373922,0.00007526449],"domain_scores_gemma":[0.99795693,0.00013076956,0.00085570733,0.00025966056,0.0007641265,0.00003281919],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000025302714,0.00013820124,0.00044606076,0.00015339452,0.0000211875,0.000013249728,0.00010563449,0.00021714788,0.9535771],"category_scores_gemma":[0.001675363,0.00015120629,0.000102437436,0.0003959966,0.000033399898,0.000002681458,0.00008470193,0.00004693084,0.000011731069],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012440511,0.000043488366,0.000022034224,0.0001949667,0.0004958483,1.9797605e-7,0.000056014178,0.0000049860323,0.13685486,0.0000031095854,0.8622803,0.0000317654],"study_design_scores_gemma":[0.0002561057,0.00007211674,0.02226553,0.00070766686,0.00020536044,0.0000015776448,0.00018464784,0.000014832314,0.008594024,0.000003461452,0.9674661,0.00022858391],"about_ca_topic_score_codex":0.0000106740235,"about_ca_topic_score_gemma":0.00040150285,"teacher_disagreement_score":0.95356536,"about_ca_system_score_codex":0.00002053522,"about_ca_system_score_gemma":0.00013294787,"threshold_uncertainty_score":0.61660135},"labels":[],"label_agreement":null},{"id":"W6902087579","doi":"10.6084/m9.figshare.19746262.v1","title":"The who, what, and how of teamwork research in medical operating rooms: A scoping review","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Teamwork; Interpersonal communication; Action (physics); Patient safety; Diversity (politics); Interpersonal relationship","score_opus":0.11483406965561287,"score_gpt":0.41354243656715534,"score_spread":0.29870836691154246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902087579","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006285599,0.0698124,1.92167e-8,0.0007583511,0.0000824479,0.00054784905,0.92872363,0.0000025641625,0.000009866306],"genre_scores_gemma":[0.000045880497,0.023606474,0.0000035186747,0.00021817589,0.0001319984,0.0003168557,0.97559583,0.0000104277515,0.00007085656],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99816185,0.0005937964,0.00028767032,0.00037228278,0.00037940528,0.00020498557],"domain_scores_gemma":[0.99885076,0.0002382229,0.00014064788,0.00056284183,0.00014330204,0.00006424482],"candidate_categories":["metaresearch","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014504327,0.000114699404,0.00022397812,0.00004095223,0.00021702553,0.00020948959,0.00051410636,0.00018828998,0.041953184],"category_scores_gemma":[0.012056396,0.0000939171,0.000045140772,0.0001790067,0.00003686307,0.000007453289,0.00088435726,0.0004907032,0.00000839826],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000027317349,0.0000108296435,0.0000024244216,0.004848082,0.000006279715,0.000003961769,0.0000057014972,1.4627877e-7,0.000121440535,1.170877e-7,0.99228364,0.002714631],"study_design_scores_gemma":[0.00007573892,0.00004024263,0.000020000203,0.14819394,0.0000032182243,0.000008067491,0.000093031085,0.000004428061,0.00006965835,9.4578735e-7,0.8513957,0.000094981],"about_ca_topic_score_codex":0.000023016346,"about_ca_topic_score_gemma":0.0007034741,"teacher_disagreement_score":0.14334585,"about_ca_system_score_codex":0.000016967579,"about_ca_system_score_gemma":0.0004007107,"threshold_uncertainty_score":0.9962655},"labels":[],"label_agreement":null},{"id":"W6902157951","doi":"10.6084/m9.figshare.16575686.v1","title":"Additional file 3 of Increasing incidence and antimicrobial resistance in Escherichia coli bloodstream infections: a multinational population-based cohort study","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Health Services; Royal Inland Hospital; Université de Sherbrooke; University of Calgary; University of Guelph","funders":"","keywords":"Escherichia coli; Incidence (geometry); Bloodstream infection; Bacteremia; Antibiotic resistance; Cohort; Cohort study","score_opus":0.011928175867025081,"score_gpt":0.25110901986448514,"score_spread":0.23918084399746006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902157951","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.48053637,0.000008209786,3.8760263e-7,0.000007202461,0.000007262215,0.00012383013,0.51923203,0.0000051813477,0.00007955226],"genre_scores_gemma":[0.52835774,1.9207286e-7,0.0010430857,0.000027095697,0.000024836536,0.00014222179,0.47033563,0.0000042186457,0.00006494094],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99925226,0.00012115329,0.00021015962,0.0002536637,0.000088450644,0.000074323594],"domain_scores_gemma":[0.99910384,0.0003451829,0.00011753524,0.000141855,0.0002646663,0.00002689897],"candidate_categories":["metaresearch","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006340522,0.00007123122,0.00009496105,0.000035682482,0.000067306224,0.00003122752,0.00004867599,0.00006024214,0.44310203],"category_scores_gemma":[0.010855481,0.00008794191,0.000026339361,0.00016327795,0.0000089758305,0.000008713544,0.000054041444,0.00005416191,0.000011282583],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004233149,0.0008382734,0.3830219,0.00015369186,0.00003195591,0.0000072294256,0.000039598122,0.000050690407,0.060422607,0.000001980637,0.5552438,0.00014598363],"study_design_scores_gemma":[0.0002365802,0.000019884845,0.991813,0.00044849605,0.0000036005902,0.0000022746563,0.00002484,0.00010673905,0.0022009239,0.0000035976657,0.005051538,0.00008853059],"about_ca_topic_score_codex":0.00007104067,"about_ca_topic_score_gemma":0.0023878952,"teacher_disagreement_score":0.6087911,"about_ca_system_score_codex":0.000018453833,"about_ca_system_score_gemma":0.00020802548,"threshold_uncertainty_score":0.9974765},"labels":[],"label_agreement":null},{"id":"W6902191128","doi":"10.6084/m9.figshare.28737123","title":"Additional file 1 of An analysis of the value-added of antibiogram subgroup stratification","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Antibiogram; Intensive care unit; Stratification (seeds); Intensive care; Bloodstream infection","score_opus":0.014900427138843528,"score_gpt":0.2633666044207589,"score_spread":0.24846617728191533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902191128","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04329749,0.000008051761,0.000002271725,0.000009347359,0.000011482022,0.000083376355,0.9559281,0.0000034113457,0.0006564961],"genre_scores_gemma":[0.44523218,1.5797636e-7,0.0001704225,0.000010322756,0.000007989172,0.000019319335,0.5543752,0.0000016185162,0.00018281843],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99944496,0.000056950674,0.00023091485,0.00014377179,0.00007570605,0.000047681333],"domain_scores_gemma":[0.99905455,0.00009291678,0.00021811311,0.00037204762,0.00024904052,0.000013301421],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000035451314,0.000047813428,0.00010444565,0.000059534967,0.000026960159,0.0000074125624,0.0001804657,0.00006587457,0.6237883],"category_scores_gemma":[0.0018131481,0.000041296087,0.0001316254,0.00043115523,0.000020900468,0.000003599073,0.000044434695,0.000025138466,0.0000039492425],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009255291,0.000102582795,0.00017864812,0.000066307824,0.00013205427,2.0173736e-8,0.000013012016,0.000038615395,0.2811376,0.000032025848,0.7174196,0.00087028765],"study_design_scores_gemma":[0.0001151833,0.00006162961,0.62588584,0.00040582925,0.00013027313,2.2526203e-7,0.00009820964,0.0019130354,0.31801027,0.000045549317,0.053235084,0.000098871635],"about_ca_topic_score_codex":0.000014069439,"about_ca_topic_score_gemma":0.00008351695,"teacher_disagreement_score":0.6641845,"about_ca_system_score_codex":0.0000035731377,"about_ca_system_score_gemma":0.000081493985,"threshold_uncertainty_score":0.37655562},"labels":[],"label_agreement":null},{"id":"W6902230891","doi":"10.6084/m9.figshare.28737129.v1","title":"Additional file 3 of An analysis of the value-added of antibiogram subgroup stratification","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Antibiogram; Statistical analysis; Stratification (seeds); Mean difference; Linear discriminant analysis","score_opus":0.014625713272452207,"score_gpt":0.262959399940932,"score_spread":0.24833368666847977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902230891","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.043611005,0.000008095738,0.0000022852137,0.00000930862,0.000011593491,0.00008341041,0.95561033,0.0000034085701,0.00066054595],"genre_scores_gemma":[0.4463989,1.6006634e-7,0.00016836972,0.000010308142,0.000008073129,0.000018957104,0.55320746,0.0000016173335,0.00018616817],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99944496,0.00005689745,0.00023101462,0.00014371093,0.00007572101,0.00004767777],"domain_scores_gemma":[0.9990538,0.00009211831,0.00021814604,0.00037150542,0.00025117127,0.000013300295],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000035435725,0.000047806894,0.000104456005,0.000059515678,0.000026957909,0.0000074273416,0.00018035554,0.00006586913,0.6180963],"category_scores_gemma":[0.0018126764,0.00004128587,0.00013161726,0.00043100005,0.00002090191,0.0000036017607,0.000044403525,0.00002513348,0.00000399115],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000094524885,0.000104113176,0.00018163647,0.00006844292,0.00013397845,2.072392e-8,0.0000132129135,0.000039221723,0.2860689,0.000032321284,0.7124524,0.0008962983],"study_design_scores_gemma":[0.00011625433,0.000061294275,0.62048745,0.0004033379,0.00012860834,2.2230815e-7,0.000097357624,0.0019081613,0.32264838,0.00004549179,0.054004986,0.000098477874],"about_ca_topic_score_codex":0.00001422441,"about_ca_topic_score_gemma":0.000084067666,"teacher_disagreement_score":0.65844744,"about_ca_system_score_codex":0.000003586896,"about_ca_system_score_gemma":0.00008153772,"threshold_uncertainty_score":0.38225284},"labels":[],"label_agreement":null},{"id":"W6902293604","doi":"10.6084/m9.figshare.26557955","title":"Additional file 1 of Prevalence of pks + bacteria and enterotoxigenic Bacteroides fragilis in patients with colorectal cancer","year":2024,"lang":"en","type":"article","venue":"Open MIND","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Bacteroides fragilis; Colorectal cancer; Bacteria; Bacteroidaceae; Anaerobic bacteria","score_opus":0.010929439716640002,"score_gpt":0.2555585178865807,"score_spread":0.24462907816994067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902293604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8858374,0.00002193181,6.4612686e-7,0.0000043271625,0.00002443396,0.00019889438,0.113746785,3.6371512e-7,0.0001652449],"genre_scores_gemma":[0.9856758,0.0000068713184,0.001238654,0.000003833846,0.00001662871,0.00009112539,0.012345932,0.000006168152,0.0006149918],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99947834,0.000028651173,0.00016281763,0.00021307699,0.000052608066,0.000064498556],"domain_scores_gemma":[0.99971336,0.00005069817,0.000060411538,0.000092362505,0.000060831208,0.00002236315],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000051704723,0.000059862094,0.00008565218,0.000024088506,0.000011752156,0.000033537537,0.00010485307,0.000042557644,0.27158186],"category_scores_gemma":[0.0001067163,0.000052728225,0.00001624146,0.000052891402,0.00006447666,0.000012631842,0.00008673206,0.000031375544,0.0000053959097],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053485704,0.0002679131,0.11919277,0.00029796857,0.000089068,0.000001047642,0.00032218936,0.0000013835745,0.79551,0.000001103812,0.044266827,0.039514888],"study_design_scores_gemma":[0.0002599917,0.00021046383,0.917764,0.00040504464,0.000009050822,8.285042e-7,0.000020508249,0.000017681212,0.058400407,0.0000025027084,0.022824546,0.00008494435],"about_ca_topic_score_codex":0.00002509734,"about_ca_topic_score_gemma":0.00019957444,"teacher_disagreement_score":0.7985713,"about_ca_system_score_codex":0.000007575789,"about_ca_system_score_gemma":0.000075121796,"threshold_uncertainty_score":0.729084},"labels":[],"label_agreement":null},{"id":"W6902350813","doi":"10.6084/m9.figshare.28737126.v1","title":"Additional file 2 of An analysis of the value-added of antibiogram subgroup stratification","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Antibiogram; Statistical analysis; Stratification (seeds); Mean difference; Missing data","score_opus":0.01437223929244964,"score_gpt":0.2628071311325019,"score_spread":0.2484348918400523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902350813","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0430745,0.00000818415,0.000002227132,0.000009310736,0.000011558638,0.00008332181,0.9561359,0.0000034141663,0.0006715739],"genre_scores_gemma":[0.44401592,1.6225145e-7,0.00016709499,0.00001034031,0.000008116322,0.000018994124,0.555594,0.0000016190019,0.00018370076],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.999445,0.000056932095,0.00023101439,0.0001436681,0.00007568782,0.000047664424],"domain_scores_gemma":[0.99905676,0.00009165305,0.00021840628,0.00037135996,0.00024850745,0.000013299524],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003526512,0.000047798803,0.000104470244,0.000059497474,0.00002696206,0.000007428038,0.00018036908,0.000065874934,0.6194844],"category_scores_gemma":[0.0017921289,0.0000412831,0.00013160091,0.00043083294,0.00002090019,0.0000036014453,0.00004442868,0.000025132898,0.0000039087035],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009335808,0.00010398743,0.00017562248,0.000067822926,0.00013390566,2.0994657e-8,0.000013205035,0.00003933744,0.27725717,0.000033024084,0.72126037,0.00090618286],"study_design_scores_gemma":[0.000116841155,0.00006211758,0.62282544,0.00040412185,0.00013082604,2.274934e-7,0.00009799931,0.001915479,0.31871107,0.000046254037,0.05559015,0.0000994372],"about_ca_topic_score_codex":0.000014205799,"about_ca_topic_score_gemma":0.000083992345,"teacher_disagreement_score":0.6656702,"about_ca_system_score_codex":0.0000035741223,"about_ca_system_score_gemma":0.00008114511,"threshold_uncertainty_score":0.38086343},"labels":[],"label_agreement":null},{"id":"W6902459476","doi":"10.6084/m9.figshare.28737132.v1","title":"Additional file 4 of An analysis of the value-added of antibiogram subgroup stratification","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Antibiogram; Statistical analysis; Stratification (seeds); Mean difference; Missing data","score_opus":0.014743805749473564,"score_gpt":0.2633712101170305,"score_spread":0.24862740436755695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902459476","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.043447327,0.00000812917,0.0000023005834,0.000009297387,0.000011499302,0.000083527644,0.95577526,0.0000034149866,0.0006592518],"genre_scores_gemma":[0.4480729,1.596076e-7,0.00016806339,0.0000102894755,0.000007971544,0.000018904171,0.5515407,0.0000016123105,0.00017939198],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9994449,0.00005689023,0.00023109511,0.00014372497,0.0000757164,0.00004768305],"domain_scores_gemma":[0.9990579,0.00009229112,0.00021818237,0.00037169713,0.00024663433,0.000013300998],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000035463403,0.000047810132,0.000104479994,0.000059542606,0.000026970958,0.000007431186,0.00018048458,0.00006587455,0.61421347],"category_scores_gemma":[0.0017880679,0.0000412935,0.00013162717,0.0004309465,0.000020905563,0.000003602273,0.00004441999,0.000025132722,0.000003911877],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009622597,0.00010497691,0.00018345134,0.0000684512,0.00013502606,2.0956254e-8,0.000013329075,0.000038991435,0.28472582,0.000033727018,0.713784,0.00090260827],"study_design_scores_gemma":[0.00011645554,0.000062659456,0.6262647,0.00040654035,0.00013027569,2.2581115e-7,0.0000981927,0.001925327,0.31868118,0.000046198413,0.05216918,0.00009905078],"about_ca_topic_score_codex":0.000014101566,"about_ca_topic_score_gemma":0.00008440306,"teacher_disagreement_score":0.6616148,"about_ca_system_score_codex":0.0000035734713,"about_ca_system_score_gemma":0.000081240505,"threshold_uncertainty_score":0.38613918},"labels":[],"label_agreement":null},{"id":"W6920462391","doi":"10.6084/m9.figshare.13331949.v1","title":"Additional file 1 of Detection of Fusobaterium nucleatum in feces and colorectal mucosa as a risk factor for colorectal cancer: a systematic review and meta-analysis","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Western University; Université de Montréal","funders":"","keywords":"Risk factor; Feces; Colorectal cancer; Fusobacterium nucleatum; Rectum; Intestinal mucosa; Colonic disease","score_opus":0.034653466425631475,"score_gpt":0.26752446260543666,"score_spread":0.2328709961798052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920462391","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.030600118,0.0013576616,6.5073675e-7,0.000034490637,0.000003178354,0.00050701486,0.9674855,0.0000041361573,0.0000072648636],"genre_scores_gemma":[0.7518547,0.00004991503,0.00009280412,0.0000954639,0.000014921307,0.0013964517,0.24644883,0.000007921087,0.000038950264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99934876,0.000077522986,0.00026310905,0.00019976277,0.000051194587,0.000059632934],"domain_scores_gemma":[0.99931234,0.00016970778,0.0002811338,0.000065567205,0.00013355074,0.000037692378],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000036928388,0.00007982669,0.00048020194,0.00002616826,0.0000235004,0.0000124386415,0.000050481736,0.000056765988,0.3993342],"category_scores_gemma":[0.0045255395,0.00006885099,0.00016584937,0.000126558,0.000011224668,0.000005450345,0.000040121387,0.000030351523,0.000003785548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002597831,0.00012805962,0.00008088289,0.23875262,0.02266193,0.0000012723531,0.00057194737,0.0000058618057,0.41594526,7.5180117e-7,0.32131997,0.0002716601],"study_design_scores_gemma":[0.002937539,0.0052891686,0.09572719,0.025291782,0.23511887,0.000053694694,0.0011399066,0.0066017206,0.5648355,0.000044831235,0.06008996,0.0028698335],"about_ca_topic_score_codex":0.000018802177,"about_ca_topic_score_gemma":0.00028620323,"teacher_disagreement_score":0.72125465,"about_ca_system_score_codex":0.000006176247,"about_ca_system_score_gemma":0.000033253873,"threshold_uncertainty_score":0.6012149},"labels":[],"label_agreement":null},{"id":"W6920753447","doi":"10.60692/k8ww0-szw53","title":"The Effect of Antibiotic Exposure and Specimen Volume on the Detection of Bacterial Pathogens in Children With Pneumonia","year":2017,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Sputum; Pneumonia; Antibiotics; Streptococcus pneumoniae; Blood culture; Pathogen; Microbiological culture; Sputum culture","score_opus":0.009192177541806654,"score_gpt":0.19109363846798336,"score_spread":0.1819014609261767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920753447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99936676,0.0000020972607,0.00006287468,0.000015964559,0.00008726131,0.0003287099,0.000028572149,0.0000044067506,0.00010336855],"genre_scores_gemma":[0.99991304,3.7298875e-7,0.000005236131,0.0000026969099,0.000038857917,0.00000700361,0.000011139874,0.0000036535025,0.00001800286],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994218,0.0000969964,0.00024769513,0.00008274851,0.000077460805,0.000073314],"domain_scores_gemma":[0.9991682,0.0000064897276,0.0003430289,0.00041504492,0.00005219145,0.000015017076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047315497,0.000074549636,0.00010095462,0.00002493807,0.00016712448,0.0001022267,0.00012886155,0.000055080374,0.0000010530549],"category_scores_gemma":[0.000085332926,0.00003942862,0.000024580013,0.00002365808,0.00007271458,0.0000151410795,0.000039582774,0.000034779554,0.000003864541],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019523784,9.858436e-7,0.9301948,0.00004564253,0.000023847693,4.688074e-8,0.00087386835,0.0000036259394,0.06752904,0.000005273262,0.0000010695305,0.0011265506],"study_design_scores_gemma":[0.00043080354,0.0002763713,0.8659607,0.000038403665,0.000009146263,0.000007139613,0.00027319483,0.000051149193,0.13290167,6.72698e-8,0.000011092823,0.00004024777],"about_ca_topic_score_codex":0.000013659922,"about_ca_topic_score_gemma":0.0000052718747,"teacher_disagreement_score":0.06537263,"about_ca_system_score_codex":0.000007822115,"about_ca_system_score_gemma":0.000008381858,"threshold_uncertainty_score":0.16078524},"labels":[],"label_agreement":null},{"id":"W6920881999","doi":"10.6084/m9.figshare.28737135","title":"Additional file 5 of An analysis of the value-added of antibiogram subgroup stratification","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Antibiogram; Statistical analysis; Stratification (seeds); Mean difference; Missing data","score_opus":0.014629352192756974,"score_gpt":0.26310660833848243,"score_spread":0.24847725614572547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920881999","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.043647874,0.000008120629,0.0000022939378,0.000009347152,0.000011501448,0.000083521016,0.9555757,0.0000034156787,0.00065822667],"genre_scores_gemma":[0.4474971,1.5980991e-7,0.00016827785,0.000010309413,0.000007983036,0.000018928102,0.55211467,0.0000016146723,0.00018093458],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99944484,0.00005693685,0.00023108789,0.00014374284,0.00007572077,0.000047681893],"domain_scores_gemma":[0.99905616,0.00009217728,0.0002181726,0.000371632,0.00024858132,0.000013302313],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000035480774,0.000047814734,0.00010449745,0.000059540278,0.000026972168,0.0000074279938,0.00018041854,0.000065877655,0.6141511],"category_scores_gemma":[0.0017950521,0.000041294246,0.00013164445,0.0004310817,0.000020905662,0.0000036022675,0.00004442218,0.000025135598,0.0000038862863],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009434175,0.000104509,0.00018200732,0.00006815971,0.00013441512,2.086034e-8,0.000013261778,0.00003928319,0.28512886,0.00003359164,0.7133866,0.0008998795],"study_design_scores_gemma":[0.00011528507,0.000061261104,0.62814176,0.0004029732,0.00012908647,2.2369288e-7,0.00009730992,0.0018939853,0.3177814,0.000045524223,0.05123308,0.00009812508],"about_ca_topic_score_codex":0.00001422616,"about_ca_topic_score_gemma":0.00008469805,"teacher_disagreement_score":0.6621535,"about_ca_system_score_codex":0.0000035742316,"about_ca_system_score_gemma":0.00008132934,"threshold_uncertainty_score":0.3862016},"labels":[],"label_agreement":null},{"id":"W6921000823","doi":"10.6084/m9.figshare.28942877.v1","title":"Additional file 1 of Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform","year":2025,"lang":"en","type":"article","venue":"Open MIND","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Gene; Workflow; Sample (material); Antibiotic resistance; Whole genome sequencing","score_opus":0.01276163491661796,"score_gpt":0.24613498582497678,"score_spread":0.2333733509083588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6921000823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92366195,0.000032783584,0.00043853643,0.00008519286,0.00004090075,0.00054604723,0.072154336,0.0000010653471,0.0030392052],"genre_scores_gemma":[0.9792069,0.0000030422023,0.005796145,0.000059333255,0.000036816244,0.000038538747,0.009061538,0.0000073592564,0.0057902937],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995193,0.000030033783,0.00014672101,0.00019596115,0.000042596734,0.000065369786],"domain_scores_gemma":[0.99937576,0.00015826657,0.00012933937,0.00020785313,0.00011306272,0.000015741165],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010379389,0.00006314284,0.00009647409,0.0000153821,0.00009880579,0.00006688294,0.00025414737,0.000052347365,0.012698766],"category_scores_gemma":[0.00019230547,0.00004885951,0.000018843682,0.000076137665,0.00011091502,0.0000060757943,0.00016710654,0.00003164306,0.0000025019751],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039101226,0.00004642214,0.000027547194,0.000020507836,0.000025233534,5.667606e-7,0.000026813339,0.00005399162,0.9350976,0.000001593033,0.043866135,0.020442614],"study_design_scores_gemma":[0.00031233003,0.0000692783,0.0004278244,0.000082037375,0.000015289324,0.000002793267,0.00011934105,0.00014239993,0.5153218,0.0000039567103,0.4834314,0.00007157552],"about_ca_topic_score_codex":0.000028354332,"about_ca_topic_score_gemma":0.0013092973,"teacher_disagreement_score":0.43956524,"about_ca_system_score_codex":0.000005142197,"about_ca_system_score_gemma":0.00011960272,"threshold_uncertainty_score":0.98820376},"labels":[],"label_agreement":null},{"id":"W6921098634","doi":"10.6084/m9.figshare.28737126","title":"Additional file 2 of An analysis of the value-added of antibiogram subgroup stratification","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Antibiogram; Statistical analysis; Stratification (seeds); Mean difference; Missing data","score_opus":0.01437223929244964,"score_gpt":0.2628071311325019,"score_spread":0.2484348918400523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6921098634","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0430745,0.00000818415,0.000002227132,0.000009310736,0.000011558638,0.00008332181,0.9561359,0.0000034141663,0.0006715739],"genre_scores_gemma":[0.44401592,1.6225145e-7,0.00016709499,0.00001034031,0.000008116322,0.000018994124,0.555594,0.0000016190019,0.00018370076],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.999445,0.000056932095,0.00023101439,0.0001436681,0.00007568782,0.000047664424],"domain_scores_gemma":[0.99905676,0.00009165305,0.00021840628,0.00037135996,0.00024850745,0.000013299524],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003526512,0.000047798803,0.000104470244,0.000059497474,0.00002696206,0.000007428038,0.00018036908,0.000065874934,0.6194844],"category_scores_gemma":[0.0017921289,0.0000412831,0.00013160091,0.00043083294,0.00002090019,0.0000036014453,0.00004442868,0.000025132898,0.0000039087035],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009335808,0.00010398743,0.00017562248,0.000067822926,0.00013390566,2.0994657e-8,0.000013205035,0.00003933744,0.27725717,0.000033024084,0.72126037,0.00090618286],"study_design_scores_gemma":[0.000116841155,0.00006211758,0.62282544,0.00040412185,0.00013082604,2.274934e-7,0.00009799931,0.001915479,0.31871107,0.000046254037,0.05559015,0.0000994372],"about_ca_topic_score_codex":0.000014205799,"about_ca_topic_score_gemma":0.000083992345,"teacher_disagreement_score":0.6656702,"about_ca_system_score_codex":0.0000035741223,"about_ca_system_score_gemma":0.00008114511,"threshold_uncertainty_score":0.38086343},"labels":[],"label_agreement":null},{"id":"W6921188462","doi":"10.6084/m9.figshare.28621621.v1","title":"Additional file 1 of Enable, empower, succeed: a bioinformatics workshop Harnessing open web-based tools for surveillance of bacterial antimicrobial resistance","year":2025,"lang":"en","type":"article","venue":"Open MIND","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Antibiotic resistance; Antimicrobial; Genomics","score_opus":0.032178198082539515,"score_gpt":0.3060016482935439,"score_spread":0.2738234502110044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6921188462","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.21779697,0.000023761972,0.0012340418,0.0003584608,0.0005361614,0.0022740383,0.755072,0.0000039252736,0.022700667],"genre_scores_gemma":[0.25845513,0.000006345191,0.32223308,0.00022334223,0.00020626286,0.00039119754,0.3952112,0.000034909368,0.023238564],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989968,0.000053833686,0.00049064716,0.00025453675,0.00006145125,0.00014274685],"domain_scores_gemma":[0.9985303,0.0004333243,0.00035114834,0.0003515423,0.0003044187,0.000029251212],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00032658744,0.00010800461,0.00024520574,0.000040693038,0.000093756724,0.0003274546,0.0006206279,0.00011247101,0.08447782],"category_scores_gemma":[0.0024646288,0.000114603165,0.00007144059,0.00013689944,0.000096859425,0.00003918217,0.0002821015,0.00003886885,0.000006566232],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048207384,0.00008487558,0.00002622037,0.00008282879,0.000025111009,1.1276278e-7,0.000018760797,0.0000057545517,0.32123476,0.0000052272776,0.67181575,0.006218539],"study_design_scores_gemma":[0.001130758,0.000036785135,0.0005725819,0.0004290461,0.000009088346,4.130189e-7,0.00007945152,0.00019026567,0.1684482,0.000012073382,0.8289434,0.00014795565],"about_ca_topic_score_codex":0.000008226138,"about_ca_topic_score_gemma":0.0003291755,"teacher_disagreement_score":0.3598608,"about_ca_system_score_codex":0.000013492083,"about_ca_system_score_gemma":0.0006696577,"threshold_uncertainty_score":0.91635907},"labels":[],"label_agreement":null},{"id":"W6921250454","doi":"10.71910/supsi.3293","title":"\"Siamo sempre lo straniero di qualcun altro\" Le competenze che gli studenti di ergoterapia hanno sviluppato a seguito di un’esperienza pratica con persone rifugiate: una ricerca qualitativa","year":2020,"lang":"it","type":"other","venue":"SUPSI ARIS","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Qualitative analysis; State of art; State law","score_opus":0.0201332151529532,"score_gpt":0.2887745311579872,"score_spread":0.268641316005034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6921250454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95319355,0.0036640551,0.0063704457,0.00436167,0.0031705669,0.004108313,0.00317449,0.0004437269,0.021513203],"genre_scores_gemma":[0.9503153,0.0003428246,0.0023154828,0.00056822505,0.0015589902,0.00016440333,0.0035967156,0.00056318427,0.040574852],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9915907,0.0017037889,0.0018497315,0.0027164826,0.0008778295,0.0012615179],"domain_scores_gemma":[0.99545354,0.00021489474,0.001130371,0.0019345017,0.0005106933,0.0007560294],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.00086726923,0.0014935383,0.001659741,0.00020625805,0.0006513321,0.0010013974,0.0014004522,0.0015685748,0.003358324],"category_scores_gemma":[0.0008807446,0.0015953977,0.00079228304,0.00061282335,0.0006388799,0.00005143859,0.0006700326,0.0010821134,0.00046836177],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069677486,0.0016875957,0.005803987,0.0016544694,0.0023587605,0.00008419419,0.018471953,0.000012807056,0.95485425,0.0012959427,0.010708008,0.0023712504],"study_design_scores_gemma":[0.010895882,0.0034582505,0.020833481,0.0015572604,0.0015435496,0.00009383947,0.042886447,0.000909423,0.11536335,0.00025793182,0.7953329,0.0068676583],"about_ca_topic_score_codex":0.0014902214,"about_ca_topic_score_gemma":0.0006917144,"teacher_disagreement_score":0.8394909,"about_ca_system_score_codex":0.00016655562,"about_ca_system_score_gemma":0.00081737357,"threshold_uncertainty_score":0.99978137},"labels":[],"label_agreement":null},{"id":"W6925765264","doi":"10.18166/tuc.2017.2.1.01","title":"Portrait des pratiques de transfert de connaissances des chercheurs de l’Université de Montréal","year":2017,"lang":"fr","type":"article","venue":"Revue TUC","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Portrait; Natural (archaeology); Context (archaeology)","score_opus":0.03992360070263597,"score_gpt":0.2797317541522862,"score_spread":0.23980815344965023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6925765264","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98138666,0.009514183,0.0024244115,0.0027647007,0.00011266776,0.00013941574,0.00004252069,0.00002665423,0.0035887656],"genre_scores_gemma":[0.9788428,0.00604993,0.006754688,0.00012886284,0.00033058773,0.000009117147,0.000032607917,0.000025959454,0.007825433],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986656,0.0002511204,0.00021341973,0.00032174675,0.000048338294,0.0004998255],"domain_scores_gemma":[0.99899817,0.000036254663,0.00012547286,0.0004369665,0.00015500073,0.00024816245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076612487,0.00017545247,0.00018481682,0.000019414587,0.0006669411,0.00015844213,0.00037082934,0.00034234967,0.0001631131],"category_scores_gemma":[0.00096356036,0.00021569288,0.0001401039,0.000029826933,0.00063636975,0.00002598994,0.000074307914,0.00015557908,0.0000095614005],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000091156304,0.00010468274,0.13245589,0.00034111692,0.00007084714,0.000051035975,0.004442132,0.000018781631,0.83854145,0.0006524282,0.0010116277,0.02221883],"study_design_scores_gemma":[0.0005213677,0.00017651217,0.6171465,0.00029167705,0.00012308672,0.00037774869,0.0008751295,0.00040405436,0.35792658,0.0018664146,0.019945426,0.00034550397],"about_ca_topic_score_codex":0.0050863693,"about_ca_topic_score_gemma":0.021055022,"teacher_disagreement_score":0.4846906,"about_ca_system_score_codex":0.0003825286,"about_ca_system_score_gemma":0.0004244819,"threshold_uncertainty_score":0.9968082},"labels":[],"label_agreement":null},{"id":"W6926389159","doi":"10.25318/3710012001-eng","title":"Undergraduate tuition fees, Canadian students, by selected standard geographic areas and by field of study","year":2019,"lang":"en","type":"dataset","venue":"Statistics Canada Dissemination","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Table (database); Field (mathematics); Geographic information system; Census","score_opus":0.003964093754448458,"score_gpt":0.26398676193947807,"score_spread":0.2600226681850296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926389159","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.061718196,0.00014069049,0.00017192302,0.0000759614,0.00021791873,0.0004771193,0.937191,0.000003020612,0.000004140789],"genre_scores_gemma":[0.24108775,0.00013985898,0.000025669075,0.000047195434,0.00001767766,0.000015328307,0.75841606,0.000013047791,0.00023743625],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985147,0.0001130936,0.0003633176,0.00040992175,0.00039296268,0.00020597204],"domain_scores_gemma":[0.99873954,0.00007449968,0.00025978233,0.0003444755,0.00042677863,0.00015489433],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019867318,0.00020936171,0.00023409745,0.00008810341,0.000108377666,0.00008157733,0.00021338323,0.00017284982,0.0000468975],"category_scores_gemma":[0.0006222346,0.0002441023,0.000014660556,0.00015049861,0.000032791297,0.000004650784,0.000047930247,0.00013742791,5.262079e-7],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024140369,0.0000668383,0.006232438,0.00009794057,0.00007599824,0.0000021305557,0.000009308413,3.063739e-7,0.0048319795,0.0000028525126,0.98821956,0.0004364988],"study_design_scores_gemma":[0.0012494243,0.0015169155,0.121243365,0.00018741282,0.00045376216,0.000006806864,0.0006096257,0.000017809509,0.00553639,0.000060113507,0.86794,0.0011783751],"about_ca_topic_score_codex":0.76383203,"about_ca_topic_score_gemma":0.9856905,"teacher_disagreement_score":0.22185841,"about_ca_system_score_codex":0.000117196825,"about_ca_system_score_gemma":0.000647561,"threshold_uncertainty_score":0.9954203},"labels":[],"label_agreement":null},{"id":"W6926487037","doi":"10.25345/c59882z1z","title":"MassIVE MSV000093078 - Fremont et al 2023 - Arsenic stress triggers active exudation of arsenic-phytochelatin complexes from Lupinus albus roots","year":2023,"lang":"en","type":"dataset","venue":"UC San Diego","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Lupinus; Arsenic; Stress (linguistics); Fight-or-flight response; Stress relief","score_opus":0.02538785628075191,"score_gpt":0.29795627823659304,"score_spread":0.27256842195584113,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926487037","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.117688976,0.00023537278,0.00004529854,0.00016654568,0.0010143733,0.0005833794,0.88010764,0.000040770996,0.000117644784],"genre_scores_gemma":[0.027503517,0.00018397365,0.0002508396,0.0003629939,0.00032056964,0.00006277689,0.9709058,0.000058685044,0.0003508812],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970671,0.0003609832,0.0008015756,0.0010299283,0.00036364773,0.00037678514],"domain_scores_gemma":[0.9973729,0.00020588304,0.0008521617,0.001186939,0.000241688,0.00014039982],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027972847,0.0004779001,0.0006129318,0.00015994324,0.00011413104,0.00009198596,0.0005601575,0.0005297626,0.0003970016],"category_scores_gemma":[0.0008477068,0.00051533093,0.0002892202,0.000225044,0.00014958733,0.000016258251,0.00032598004,0.00040475003,0.0002841122],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015453674,0.0001271969,0.00007249131,0.00004861773,0.00021234916,0.000009411529,0.00003878699,0.000035980494,0.22907616,0.000002926178,0.76978534,0.00043617928],"study_design_scores_gemma":[0.0022682857,0.00046337937,0.03338148,0.00040710822,0.00041352227,0.0000069735142,0.0009762421,0.00015825145,0.12553933,0.00029032514,0.8345331,0.0015619743],"about_ca_topic_score_codex":0.0030063698,"about_ca_topic_score_gemma":0.013356142,"teacher_disagreement_score":0.10353682,"about_ca_system_score_codex":0.00006925927,"about_ca_system_score_gemma":0.00022951695,"threshold_uncertainty_score":0.9997298},"labels":[],"label_agreement":null},{"id":"W6926584865","doi":"10.25316/ir-12797","title":"Nanaimo Free Press [Thursday, September 21, 1893]","year":2019,"lang":"en","type":"other","venue":"VIURRSpace (Vancouver Island University)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"","score_opus":0.010308942082403471,"score_gpt":0.21033967410905532,"score_spread":0.20003073202665186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926584865","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008756515,0.00025281674,0.00044705588,0.00005719028,0.0016880542,0.00039269982,0.00036110773,0.00010556848,0.99660796],"genre_scores_gemma":[0.001566301,0.00021764773,0.00028765324,0.00006517046,0.0004808593,0.0000013439025,0.000021737442,0.00020907118,0.99715024],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99850166,0.000109897344,0.000134721,0.00075142167,0.0001823006,0.00031998544],"domain_scores_gemma":[0.9982847,0.000015360087,0.00024050234,0.0012525935,0.000087691944,0.00011917184],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000080238926,0.0003456894,0.00031725358,0.00018683329,0.00007922329,0.000051394276,0.0006234943,0.000580938,0.0006548181],"category_scores_gemma":[0.000062530264,0.000377887,0.0001844677,0.00015528269,0.000093164315,0.000008952483,0.00038192788,0.00019088476,0.0002144281],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045772933,0.000052909614,0.000016152544,0.00008671121,0.00012696206,0.0000130966955,0.000027838458,0.000007389423,0.0053413473,0.00008342589,0.99403924,0.00015912781],"study_design_scores_gemma":[0.00096848805,0.000064482585,0.000017464636,0.00008052406,0.000079593396,0.0000021402243,0.00012420521,0.000010618462,0.00078942213,0.0000063861507,0.99739856,0.00045811915],"about_ca_topic_score_codex":0.00044605572,"about_ca_topic_score_gemma":0.004643019,"teacher_disagreement_score":0.004551925,"about_ca_system_score_codex":0.00004847327,"about_ca_system_score_gemma":0.00012865546,"threshold_uncertainty_score":0.9998673},"labels":[],"label_agreement":null},{"id":"W6926687007","doi":"10.25549/webster-c100-13774","title":"The Widening Divide, 1989-06","year":2021,"lang":"en","type":"dataset","venue":"University of Southern California Digital Library","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Commission; Newspaper; Poverty; Inequality; Economic Justice; Variety (cybernetics)","score_opus":0.007068487042854785,"score_gpt":0.17420572369185203,"score_spread":0.16713723664899724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926687007","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0073444583,0.00025649456,0.00002841384,0.00017984021,0.000058647216,0.00008038967,0.99177235,0.000018563194,0.0002608437],"genre_scores_gemma":[0.0017869913,0.00015169628,0.000042491734,0.00005861812,0.00016087617,1.8710398e-7,0.99449885,0.00001772373,0.003282556],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991222,0.000059723414,0.00018968208,0.00032201866,0.00013929248,0.00016710977],"domain_scores_gemma":[0.9990564,0.000050556988,0.00020408334,0.000550818,0.00005645046,0.000081697464],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007255784,0.00016339202,0.00016646134,0.0000309393,0.0002204351,0.00022198017,0.0005433189,0.00021157516,0.00033241004],"category_scores_gemma":[0.00015184129,0.00015105582,0.00018767022,0.00008664409,0.00020103234,0.000011607571,0.00060822826,0.00014506176,0.0012755166],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038242408,0.00003385486,0.00090808887,0.00003984552,0.0000576138,0.000009364938,0.000006731176,0.0000012643425,0.00056286756,6.384412e-7,0.997696,0.00064548315],"study_design_scores_gemma":[0.00012656237,0.000015614916,0.000025370706,0.000045450437,0.000026839569,0.0000042869265,0.0004929416,0.0000018068988,0.00018165754,0.000036921905,0.998879,0.0001635156],"about_ca_topic_score_codex":0.000027479799,"about_ca_topic_score_gemma":0.000030365936,"teacher_disagreement_score":0.0055574668,"about_ca_system_score_codex":0.000007593527,"about_ca_system_score_gemma":0.00016806595,"threshold_uncertainty_score":0.9995021},"labels":[],"label_agreement":null},{"id":"W6926839215","doi":"10.25446/oxford.25805800","title":"55077: Tyne Cot British Military Cemetery","year":2024,"lang":"en","type":"other","venue":"University of Oxford","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Harbour; Period (music); Settlement (finance); Newcastle upon tyne","score_opus":0.015623329491947816,"score_gpt":0.2051546158846905,"score_spread":0.1895312863927427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926839215","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.053389218,0.005983891,0.0006790889,0.00023396766,0.0013610377,0.00041817498,0.0009899413,0.00018605319,0.93675864],"genre_scores_gemma":[0.013183938,0.001052783,0.0012144193,0.000046709803,0.00017625981,1.2612253e-7,0.00051989127,0.000093748546,0.98371214],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99942017,0.000025495985,0.00008605993,0.00030190722,0.000065711494,0.00010067139],"domain_scores_gemma":[0.9995848,0.0000028549707,0.000055467557,0.0002771218,0.000035351375,0.000044411903],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006034653,0.00009661294,0.0001438053,0.000061097984,0.000023755762,0.000009323383,0.00019015401,0.00022481807,0.0014023951],"category_scores_gemma":[0.00002622136,0.00014154139,0.000114805305,0.000050223363,0.00010020735,0.0000015442283,0.0001350522,0.000071672635,0.00006404799],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001569981,0.000033914628,0.00011473344,0.00020180654,0.00009378639,0.000016712194,0.000031034175,2.4475816e-7,0.02142703,0.000014996845,0.97519827,0.0028517796],"study_design_scores_gemma":[0.00014423706,0.000044020937,0.00026802282,0.00012330104,0.00004181723,0.0000061277524,0.000112796864,0.0000046129967,0.00026734272,0.000020003246,0.9988282,0.00013957328],"about_ca_topic_score_codex":0.0015671597,"about_ca_topic_score_gemma":0.0030969505,"teacher_disagreement_score":0.046953496,"about_ca_system_score_codex":0.000011326341,"about_ca_system_score_gemma":0.00004196977,"threshold_uncertainty_score":0.99951047},"labels":[],"label_agreement":null},{"id":"W6926905698","doi":"10.25446/oxford.25791132.v1","title":"55666: Canadian Memorial","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"","score_opus":0.02653379661958825,"score_gpt":0.26724166848550984,"score_spread":0.2407078718659216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926905698","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19701879,0.0038746083,0.000015461626,0.0027244675,0.0073783575,0.0011700933,0.6567215,0.00057485176,0.13052191],"genre_scores_gemma":[0.88012946,0.0000013220631,0.00003687066,0.00017774705,0.0011064343,0.000028216331,0.11616456,0.000013409339,0.0023419808],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9995596,0.000013834951,0.00007268806,0.00019186191,0.000039371705,0.00012266474],"domain_scores_gemma":[0.9996852,0.000006981186,0.000008101001,0.00016142924,0.00004190784,0.00009637963],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00003341703,0.000054690012,0.000034860313,0.000029048791,0.000046849986,0.00011868673,0.00009583425,0.000075562864,0.06456114],"category_scores_gemma":[0.00050557853,0.000055781748,0.000039717874,0.00006010431,0.0000026276641,0.0000025904267,0.00002837313,0.000044643028,0.0023983838],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000019883894,0.0000030072217,0.00002329176,0.000042666845,0.000009235192,0.0000066902307,0.000022064187,0.0000011653011,0.06916718,0.000026216325,0.92756355,0.0031329454],"study_design_scores_gemma":[0.000034528577,0.000012912093,0.00089732476,0.00008532114,0.0000019838922,0.000006088909,0.0000072358043,0.000071222385,0.01051429,0.000015931115,0.9882722,0.00008098243],"about_ca_topic_score_codex":0.0009090429,"about_ca_topic_score_gemma":0.013330696,"teacher_disagreement_score":0.68311065,"about_ca_system_score_codex":0.00001658994,"about_ca_system_score_gemma":0.00021980198,"threshold_uncertainty_score":0.99837834},"labels":[],"label_agreement":null},{"id":"W6927032212","doi":"10.25549/webster-c100-10151","title":"Voter Information Pamphlet, 1992-06-02","year":2021,"lang":"en","type":"dataset","venue":"University of Southern California Digital Library","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Commission; Newspaper; Economic Justice; Variety (cybernetics); Royal Commission; Criminal justice","score_opus":0.005401811793948555,"score_gpt":0.16223085613367833,"score_spread":0.15682904433972977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6927032212","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00786316,0.000034436478,0.00005857779,0.00010690925,0.000034961144,0.000093055794,0.9912679,0.00002258169,0.00051839685],"genre_scores_gemma":[0.0021325075,0.000036035843,0.000101513484,0.0001409897,0.00009667879,1.7020463e-7,0.996857,0.000011288187,0.00062382844],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992445,0.000035525496,0.00022161234,0.00023128295,0.00013049501,0.00013658992],"domain_scores_gemma":[0.9991852,0.000011337988,0.00022548091,0.00043486455,0.000056448294,0.00008668673],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000040167157,0.00016724775,0.0001848438,0.00006775935,0.000067663255,0.00015146159,0.0003279362,0.0002917431,0.0009250431],"category_scores_gemma":[0.0000650637,0.00019027024,0.00016527843,0.00008341005,0.00008478284,0.000039477327,0.00037859034,0.00011908975,0.0032645778],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004291329,0.000048195154,0.00038017155,0.00010771988,0.000040764062,0.0000046478813,0.000011331888,0.0000025887737,0.00030556833,4.6055024e-7,0.99858254,0.0004731191],"study_design_scores_gemma":[0.00019863794,0.000021413343,0.000017011691,0.000050251154,0.000021367789,0.000004092924,0.00041800912,0.000004687159,0.00019025493,0.000015946307,0.99886215,0.00019617133],"about_ca_topic_score_codex":0.000039020757,"about_ca_topic_score_gemma":0.000015671776,"teacher_disagreement_score":0.0057306527,"about_ca_system_score_codex":0.000009365252,"about_ca_system_score_gemma":0.00015918535,"threshold_uncertainty_score":0.99998826},"labels":[],"label_agreement":null},{"id":"W6927091325","doi":"10.25549/cswa-c34-119","title":"Maurice Hamovitch interview, 1990","year":2015,"lang":"en","type":"dataset","venue":"University of Southern California Digital Library","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Unrest; Social work; Work (physics); Anger; Social research; Oral history; Social change","score_opus":0.013157116983942719,"score_gpt":0.19024928004604189,"score_spread":0.17709216306209916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6927091325","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0063045747,0.000104197534,0.000032946333,0.000088359375,0.00006301133,0.0001085686,0.99252564,0.000027934128,0.00074474467],"genre_scores_gemma":[0.0015627308,0.00004912616,0.00009000689,0.000088171604,0.0001370292,1.6710065e-7,0.9961971,0.000021066915,0.001854575],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990723,0.0000628386,0.00020164625,0.0003629476,0.00014683949,0.00015343461],"domain_scores_gemma":[0.9990432,0.000011927962,0.00021748529,0.0005141433,0.000073411145,0.00013977742],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00009471579,0.00019501775,0.00022774581,0.000068440604,0.000050754166,0.000087393586,0.0005642668,0.0002875483,0.0009998854],"category_scores_gemma":[0.00006956397,0.00021551794,0.00016453715,0.000089751324,0.00013734153,0.000014859258,0.0005642973,0.00013299534,0.0041095954],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006824848,0.00008355884,0.0003122476,0.000099893565,0.000043657175,0.0000078026505,0.000012749864,8.890702e-7,0.00030399166,1.9242424e-7,0.9984467,0.0006200584],"study_design_scores_gemma":[0.0002177971,0.000046002726,0.000008576584,0.00004784148,0.000030903295,0.0000047197677,0.00037493094,0.000003035685,0.00009381883,0.000037793416,0.99891746,0.00021711597],"about_ca_topic_score_codex":0.000052431325,"about_ca_topic_score_gemma":0.000016588207,"teacher_disagreement_score":0.004741844,"about_ca_system_score_codex":0.000012687552,"about_ca_system_score_gemma":0.00015029016,"threshold_uncertainty_score":0.99991333},"labels":[],"label_agreement":null},{"id":"W6927228468","doi":"10.25549/wpacards-m46426","title":"WPA block face card for household census of Kensington, Marion, Bellevue, Edgeware, Douglas Streets, in Los Angeles","year":2012,"lang":"en","type":"dataset","venue":"University of Southern California Digital Library","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Census; Block (permutation group theory); Face (sociological concept); Quarter (Canadian coin)","score_opus":0.013447303206408374,"score_gpt":0.18603548352419766,"score_spread":0.17258818031778927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6927228468","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07130773,0.00021541062,0.000010955339,0.000023081799,0.00007569518,0.00025126914,0.92801356,0.000016749298,0.00008553542],"genre_scores_gemma":[0.027430374,0.000050247534,0.00016567916,0.000019007211,0.0001529543,3.5211448e-7,0.9718322,0.00003127846,0.00031790978],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99893624,0.00004261098,0.00031510319,0.00035543978,0.00012190331,0.00022872884],"domain_scores_gemma":[0.9989948,0.000040317464,0.00032845687,0.0004603679,0.00007308105,0.00010293277],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0000784244,0.00022782659,0.00033682043,0.000120631965,0.00005876708,0.000036778372,0.00038999252,0.00037320796,0.000021935088],"category_scores_gemma":[0.000076193624,0.00026051968,0.00019792432,0.000110985406,0.00018012425,0.00001772446,0.0003456008,0.00012612705,0.000023188595],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002583841,0.00021114564,0.0067027775,0.00035273717,0.00006279969,0.0000032030746,0.00001558234,0.000009940158,0.0011684994,6.5119474e-7,0.9907728,0.00044150557],"study_design_scores_gemma":[0.00046950812,0.00004685138,0.00019423684,0.000102053804,0.00005529895,0.0000025024974,0.0004980874,0.000004279389,0.0011924739,0.000014694959,0.9971636,0.0002564446],"about_ca_topic_score_codex":0.00012382193,"about_ca_topic_score_gemma":0.00013516743,"teacher_disagreement_score":0.04387736,"about_ca_system_score_codex":0.00001649789,"about_ca_system_score_gemma":0.00011731475,"threshold_uncertainty_score":0.9999847},"labels":[],"label_agreement":null},{"id":"W6927307192","doi":"10.3389/fspor.2020.579264.s001","title":"Image_1_A League-Wide Evaluation of Factors Influencing Match Activity Profile in Elite Australian Football.JPEG","year":2020,"lang":"en","type":"other","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Football; League; Confidence interval; Quarter (Canadian coin); Duration (music); Range (aeronautics); Multivariate statistics; Match play","score_opus":0.0702981040178548,"score_gpt":0.31593616731287005,"score_spread":0.24563806329501525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6927307192","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5703102,0.0007965672,0.000006322135,0.00025500415,0.00051905,0.004551185,0.28082207,0.00026058842,0.14247908],"genre_scores_gemma":[0.7483313,0.000011472743,0.00021413078,0.00006655676,0.00034528988,0.00021554784,0.20986493,0.0002709003,0.040679835],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99866086,0.00016407155,0.0002733626,0.00046765796,0.00025488806,0.00017916359],"domain_scores_gemma":[0.99902475,0.00002028054,0.00034919742,0.00039367398,0.00014540127,0.00006668867],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001475271,0.00021798871,0.00025058552,0.000083995015,0.000019851375,0.000037931524,0.00022306028,0.00036778764,0.06498807],"category_scores_gemma":[0.0023196938,0.00023341316,0.00009816613,0.00013900381,0.000011536656,0.000006755717,0.00011693964,0.00016508902,0.00016452697],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018573566,0.00005368669,0.0021566572,0.00070492714,0.00004647055,0.0000013530887,0.00013417707,0.0000073653505,0.4457098,2.726505e-7,0.5479793,0.0031874338],"study_design_scores_gemma":[0.0012468753,0.00012027299,0.24928418,0.0046176338,0.00010495993,0.000001922389,0.0002700932,0.00021461023,0.30961716,0.000014278374,0.43338463,0.0011233848],"about_ca_topic_score_codex":0.00024493385,"about_ca_topic_score_gemma":0.0006055458,"teacher_disagreement_score":0.24712752,"about_ca_system_score_codex":0.0000474953,"about_ca_system_score_gemma":0.00020923953,"threshold_uncertainty_score":0.9518312},"labels":[],"label_agreement":null},{"id":"W6927402595","doi":"10.3389/fpls.2018.01589.s007","title":"Table_1_Haplotype Loci Under Selection in Canadian Durum Wheat Germplasm Over 60 Years of Breeding: Association With Grain Yield, Quality Traits, Protein Loss, and Plant Height.DOCX","year":2018,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Haplotype; Germplasm; Selection (genetic algorithm); Locus (genetics); Association mapping; Allele; Quantitative trait locus; Genetic variation; Genome; Genetic diversity","score_opus":0.026830203540932237,"score_gpt":0.25762546342740966,"score_spread":0.23079525988647742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6927402595","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1439886,0.000039863146,1.5948814e-7,0.00004191752,0.000031158736,0.00031460784,0.85556084,0.000006839312,0.000016033675],"genre_scores_gemma":[0.069120035,0.000009768595,0.00001690029,0.00006952707,0.00015957936,0.00005130147,0.93036485,0.000017817796,0.00019021438],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99869204,0.000113609785,0.00030663266,0.00042280307,0.0001725845,0.0002923443],"domain_scores_gemma":[0.9992072,0.000032656382,0.00029947658,0.00017892753,0.00015993955,0.00012181829],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00028049538,0.00018033867,0.0002319794,0.00010491683,0.00006989185,0.00006500289,0.00014271172,0.0005409659,0.0048000477],"category_scores_gemma":[0.0011442691,0.0001942898,0.000036412024,0.00014730277,0.00001696524,0.00001159796,0.000050164763,0.0002353325,0.000024056671],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046082132,0.00003079758,0.0006353223,0.00025159828,0.00003827633,0.000003545792,0.000019098861,0.0000016382345,0.022096215,0.0000011831356,0.976839,0.000037223283],"study_design_scores_gemma":[0.0003854356,0.00021401818,0.12588614,0.0007163176,0.000020480114,0.000010146494,0.00001870893,0.0000079304145,0.0026162576,0.000011991383,0.86974597,0.0003665957],"about_ca_topic_score_codex":0.04651707,"about_ca_topic_score_gemma":0.619775,"teacher_disagreement_score":0.5732579,"about_ca_system_score_codex":0.00016725923,"about_ca_system_score_gemma":0.00044659319,"threshold_uncertainty_score":0.9961097},"labels":[],"label_agreement":null},{"id":"W6928086469","doi":"10.34943/d9a97dfa-d5c7-4a7e-b480-fe09a6b948b7","title":"Fraser River Delta Lower Slope Hydrophone Deployed 2014-03-08","year":2014,"lang":"en","type":"dataset","venue":"Ocean Networks Canada Society","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Hydrophone; Underwater; River delta; Delta; Sound (geography); Waveform; Data logger","score_opus":0.005564082308485174,"score_gpt":0.20351690209523207,"score_spread":0.1979528197867469,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6928086469","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.019183947,0.00091591605,0.0006681808,0.00022678993,0.00427131,0.0004993079,0.9741567,0.00005077186,0.000027089727],"genre_scores_gemma":[0.02296685,0.00093021826,0.00023097031,0.0035577412,0.0021755742,0.000009326493,0.9692637,0.000074412565,0.00079123274],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99749446,0.00014919577,0.00050733745,0.0009182692,0.00033876084,0.00059195765],"domain_scores_gemma":[0.9978055,0.00004627212,0.00032778503,0.0013239939,0.00019500223,0.00030146167],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003605616,0.0004901253,0.0004269549,0.000015688218,0.00029009357,0.00010286662,0.00065959163,0.0008234981,0.00022196573],"category_scores_gemma":[0.00010698888,0.0005124861,0.0003314519,0.00013354563,0.00018274787,0.0000054184316,0.0002814062,0.0005398321,0.000011334041],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024947532,0.000042215608,0.00018370907,0.000054180357,0.00016207664,0.000006735689,0.000004706409,0.000551543,0.00039458976,2.5512176e-7,0.9984191,0.00015596281],"study_design_scores_gemma":[0.00039381825,0.00004583985,0.00034008687,0.000034305427,0.00009246421,0.00000406925,0.00001689712,0.000662109,0.00010016606,0.0000030916558,0.99772906,0.0005781085],"about_ca_topic_score_codex":0.12473057,"about_ca_topic_score_gemma":0.45691252,"teacher_disagreement_score":0.33218193,"about_ca_system_score_codex":0.00014835701,"about_ca_system_score_gemma":0.00076313573,"threshold_uncertainty_score":0.9997327},"labels":[],"label_agreement":null},{"id":"W6930192033","doi":"10.5281/zenodo.12002864","title":"comment faire la politique pdf","year":2024,"lang":"fr","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Context (archaeology); Subject (documents); Work (physics); Field (mathematics); Filter (signal processing)","score_opus":0.02323786991765966,"score_gpt":0.2566752957621313,"score_spread":0.2334374258444716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930192033","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010709293,0.00064367004,0.0011782427,0.0094879,0.00048975943,0.000515587,0.00050815626,0.00029034854,0.9858154],"genre_scores_gemma":[0.14966309,0.0007979813,0.00048517797,0.0010617572,0.0014124976,1.9303695e-7,0.011391524,0.0065779663,0.8286098],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975103,0.0007836392,0.00035340016,0.00075307436,0.00020320292,0.00039638998],"domain_scores_gemma":[0.99855095,0.000014893446,0.00013991591,0.000701251,0.00036580826,0.00022718291],"candidate_categories":["metaepi_narrow","scholarly_communication","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0007287091,0.00027409557,0.0002069417,0.00015612716,0.0007115856,0.0012593188,0.0008329718,0.0003647299,0.1460871],"category_scores_gemma":[0.0007799027,0.00031378018,0.00013132728,0.00022321146,0.00028851745,0.000010617622,0.0013909148,0.00039597228,0.09612384],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002689694,0.00018118517,0.0000022560064,0.00045930574,0.00013901928,0.000015219193,0.00040851015,0.000002124642,0.048264924,0.027527954,0.8876882,0.03528438],"study_design_scores_gemma":[0.00023619141,0.00016898813,0.00010580369,0.000186616,0.000041188036,0.000118055454,0.00023209608,0.00004513169,0.0013371855,0.00034922743,0.9968771,0.00030247087],"about_ca_topic_score_codex":0.000042730353,"about_ca_topic_score_gemma":0.0000034347484,"teacher_disagreement_score":0.1572056,"about_ca_system_score_codex":0.00015180283,"about_ca_system_score_gemma":0.0000120726545,"threshold_uncertainty_score":0.99993145},"labels":[],"label_agreement":null},{"id":"W6930286497","doi":"10.5281/zenodo.11097269","title":"British Canadian University, Obufu Cross River State. Admission Form 2024/2025 is out call now (07044935866).","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Nucleofection; Gestational period; TSG101; Dysgeusia; Diafiltration; Proteogenomics; Hyporeflexia; Liquation; Emperipolesis","score_opus":0.022428017568270363,"score_gpt":0.2522242664047025,"score_spread":0.22979624883643215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930286497","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0043556252,0.00045995778,0.00033784925,0.0006452532,0.00083929795,0.0006688027,0.0047095115,0.0004859588,0.98749775],"genre_scores_gemma":[0.010000685,0.00047986637,0.000102688224,0.00017628103,0.0002975891,2.2612834e-8,0.006657974,0.0026751314,0.9796098],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984188,0.00012920711,0.00018801262,0.00069340813,0.00019730923,0.00037327086],"domain_scores_gemma":[0.9986847,0.00000281093,0.000094571216,0.00051749067,0.00032388058,0.00037653223],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002512729,0.00019110527,0.00015227444,0.00023433068,0.0005408095,0.0009009739,0.00076674466,0.0002620893,0.059740316],"category_scores_gemma":[0.00020945998,0.00025050156,0.00008899432,0.00021695944,0.00017060795,0.000013742391,0.0008674593,0.0002583968,0.012095524],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015949607,0.000026715043,0.000013298873,0.00012239345,0.000059427566,0.000035259254,0.00020466192,6.8046404e-7,0.0035092905,0.000021076461,0.9861637,0.009827556],"study_design_scores_gemma":[0.00023771604,0.00006631937,0.00029435873,0.000120347184,0.000020030775,0.000034611567,0.000057718473,0.000019210047,0.0002462533,0.000032689528,0.99860597,0.0002648006],"about_ca_topic_score_codex":0.008540442,"about_ca_topic_score_gemma":0.0067166626,"teacher_disagreement_score":0.047644794,"about_ca_system_score_codex":0.0001759753,"about_ca_system_score_gemma":0.000045216493,"threshold_uncertainty_score":0.9999947},"labels":[],"label_agreement":null},{"id":"W6930341383","doi":"10.5281/zenodo.10487249","title":"Fig. 4 in Very-long-chain 3-hydroxy fatty acids, 3-hydroxy fatty acid methyl esters and 2-alkanols from cuticular waxes of Aloe arborescens leaves","year":2015,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Wax; Fatty acid; Relative standard deviation; Chemical composition; Composition (language)","score_opus":0.02496658752691657,"score_gpt":0.2493956228715347,"score_spread":0.2244290353446181,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930341383","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.80312735,0.005659906,0.0026554503,0.00088480016,0.00084780215,0.0033387158,0.008454833,0.0010283185,0.17400284],"genre_scores_gemma":[0.9535983,0.0011176636,0.0014258823,0.00016581635,0.0005474607,4.4451338e-7,0.021598037,0.0045047966,0.01704157],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99777085,0.00046684014,0.0004145739,0.0007295968,0.00029311696,0.0003250077],"domain_scores_gemma":[0.9985266,0.0000129102045,0.0002739689,0.00075003,0.00025398447,0.0001825514],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005929041,0.00028383656,0.00035494036,0.00023352062,0.00020704775,0.00025152665,0.00065677124,0.00032573318,0.001742408],"category_scores_gemma":[0.0010420751,0.00030581243,0.000071993476,0.00024705095,0.00028327428,0.000017341412,0.0008803399,0.00025438028,0.00024349075],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013620978,0.00022877974,0.00044517106,0.0002454755,0.00021298515,0.000016873602,0.0007758167,0.000014476984,0.8234136,0.000077700286,0.1646705,0.009762437],"study_design_scores_gemma":[0.0012549029,0.00021239913,0.005946038,0.00025877953,0.00005729425,0.000020855714,0.0002669586,0.00012080843,0.04056067,0.00008038006,0.950673,0.0005479266],"about_ca_topic_score_codex":0.00022094464,"about_ca_topic_score_gemma":0.000042625317,"teacher_disagreement_score":0.7860025,"about_ca_system_score_codex":0.000058315334,"about_ca_system_score_gemma":0.000015528327,"threshold_uncertainty_score":0.9999394},"labels":[],"label_agreement":null},{"id":"W6930583260","doi":"10.5281/zenodo.11078749","title":"MONITORING POST-COVID-19 SEQUELAE IN PRIMARY HEALTH CARE: A SCOPING REVIEW","year":2024,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Psychosocial; Anxiety; Depression (economics); Multidisciplinary approach; Distress; Qualitative research; MEDLINE; Pandemic","score_opus":0.04767789351679283,"score_gpt":0.33385336444218544,"score_spread":0.28617547092539264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930583260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.48251405,0.3643444,0.011405462,0.049064346,0.0028379986,0.010775757,0.0010136265,0.0046226457,0.07342172],"genre_scores_gemma":[0.96411353,0.019193288,0.0009264244,0.0053891665,0.00070148474,6.742275e-7,0.0075603304,0.0014549878,0.00066013075],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99860793,0.0003160742,0.0002828038,0.00042698364,0.00014186827,0.00022436627],"domain_scores_gemma":[0.99925977,0.000011195109,0.000052407155,0.0003294604,0.00019063585,0.00015652236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085318426,0.00009433148,0.00012022835,0.00010228956,0.0005449276,0.00037763847,0.00034194512,0.000047536323,0.00066644565],"category_scores_gemma":[0.0011334737,0.000104952145,0.000044452856,0.00031266836,0.000047035785,0.000018276924,0.00043820107,0.00014158602,0.0004596712],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008657817,0.00012852732,0.0000717422,0.028598594,0.000051576706,0.000035600635,0.0034903616,0.000031941046,0.5599432,0.00032138635,0.0772675,0.32997298],"study_design_scores_gemma":[0.00033771273,0.00025676025,0.0010202038,0.0059196367,0.000009610851,0.00011131504,0.00036087626,0.0000150307815,0.0024586348,0.0000152341645,0.9892247,0.00027033847],"about_ca_topic_score_codex":0.00003673108,"about_ca_topic_score_gemma":0.0000029252435,"teacher_disagreement_score":0.91195714,"about_ca_system_score_codex":0.00027582215,"about_ca_system_score_gemma":0.00006505931,"threshold_uncertainty_score":0.72971123},"labels":[],"label_agreement":null},{"id":"W6930619892","doi":"10.5281/zenodo.14521034","title":"FIGURE 2 in Two new species of Pluteus (Pluteaceae) from India based on morphology and ITSbased phylogeny","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"","keywords":"Morphology (biology); Phylogenetics; Phylogenetic tree; Tree (set theory); Taxonomy (biology)","score_opus":0.02549260489089182,"score_gpt":0.2573067685891961,"score_spread":0.23181416369830427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930619892","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09307883,0.0012111716,0.00070761796,0.0007532848,0.0005346073,0.0011056075,0.0028529672,0.00044483878,0.89931107],"genre_scores_gemma":[0.65447646,0.0002165807,0.0008729315,0.0003549733,0.00086101063,1.347217e-7,0.015683765,0.0046534953,0.32288063],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987722,0.00020921032,0.00021439328,0.0005063107,0.00013097905,0.00016690082],"domain_scores_gemma":[0.99927735,0.000011324117,0.00011892224,0.00043920288,0.000066916386,0.00008628245],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00022127847,0.00015700597,0.00018180268,0.00024010011,0.00008804813,0.00014243918,0.00037004077,0.00015293359,0.015264252],"category_scores_gemma":[0.00040625653,0.00016871333,0.000042724965,0.0001793948,0.000117289994,0.000002789268,0.00033255643,0.00019027146,0.0012058042],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000069233014,0.00007076412,0.000031857966,0.00008497581,0.000035922734,0.000008822357,0.00012441054,0.000008240346,0.30690104,0.00017648269,0.6886476,0.0038406411],"study_design_scores_gemma":[0.0006036239,0.00013440056,0.0019818426,0.00011631249,0.000015101614,0.0000033160866,0.000046889,0.00005406641,0.003927735,0.00004638278,0.9929069,0.00016341131],"about_ca_topic_score_codex":0.00019562861,"about_ca_topic_score_gemma":0.000012147134,"teacher_disagreement_score":0.57643044,"about_ca_system_score_codex":0.000028341376,"about_ca_system_score_gemma":0.000011671587,"threshold_uncertainty_score":0.99957186},"labels":[],"label_agreement":null},{"id":"W6930627371","doi":"10.5281/zenodo.15718200","title":"Generalised ultractegories and conceptual completeness of geometric logic","year":2025,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Completeness (order theory); Algebra over a field; Calculus (dental); Mathematical logic; Simple (philosophy)","score_opus":0.041114763835933175,"score_gpt":0.2657575881963234,"score_spread":0.2246428243603902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930627371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9787716,0.00019654611,0.006081831,0.0002716355,0.000089832785,0.00020739903,0.00011203495,0.000083000035,0.014186105],"genre_scores_gemma":[0.9978301,0.00005980551,0.00026071514,0.00009842767,0.000040339968,2.3780265e-8,0.0011007598,0.0001019995,0.0005078643],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992473,0.0001460404,0.0001784606,0.0002315138,0.00007936605,0.00011728392],"domain_scores_gemma":[0.9992399,0.000013175982,0.000066892695,0.00022827779,0.00040849455,0.000043264674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030176458,0.00006543689,0.00009260247,0.00011406105,0.00046110144,0.00014389104,0.00026937443,0.00005054521,0.0006008996],"category_scores_gemma":[0.0009359957,0.00006874456,0.000024039457,0.00031945866,0.00023109003,0.000008105685,0.00034579533,0.00005628916,0.000042995467],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048905327,0.000065219894,0.00014875307,0.000051655687,0.000029095561,4.628429e-7,0.00013819708,0.000010704833,0.9635957,0.007819897,0.010056665,0.018034734],"study_design_scores_gemma":[0.00084904145,0.00025191082,0.032304678,0.000020937374,0.00002091723,0.000021427011,0.0006310984,0.000086220636,0.08384969,0.00030990303,0.8814623,0.00019191427],"about_ca_topic_score_codex":0.000010710108,"about_ca_topic_score_gemma":3.8354355e-7,"teacher_disagreement_score":0.879746,"about_ca_system_score_codex":0.000012361191,"about_ca_system_score_gemma":0.000003866799,"threshold_uncertainty_score":0.65794295},"labels":[],"label_agreement":null},{"id":"W6930639621","doi":"10.5281/zenodo.14976030","title":"Amauromyza (Cephalomyza) karli","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Altitude (triangle); Czech; Low altitude; Karst","score_opus":0.023010278351708845,"score_gpt":0.2528771953569376,"score_spread":0.22986691700522874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930639621","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00041350932,0.00023384248,0.0023028487,0.00023674457,0.000282886,0.0004075474,0.00048301934,0.0006024214,0.9950372],"genre_scores_gemma":[0.025668988,0.00034190484,0.00066224276,0.00030836047,0.00090525724,1.07762496e-7,0.017499836,0.0063537066,0.9482596],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985482,0.00023393231,0.00021260638,0.00058263453,0.00016673726,0.0002558848],"domain_scores_gemma":[0.9987435,0.0000050468193,0.00013075961,0.00073289295,0.00027735674,0.00011046003],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003019281,0.00018518692,0.00015859454,0.00019059653,0.0006008364,0.0004347374,0.0008245699,0.0002310336,0.025712216],"category_scores_gemma":[0.00073975796,0.00021272476,0.000077606244,0.00020746452,0.00011531821,0.0000047990907,0.0009201149,0.00017836978,0.0040688417],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016513852,0.000056849938,0.000001715155,0.00007824858,0.000054520144,0.0000018873843,0.000027923907,0.0000010147239,0.03953484,0.0006053618,0.93456006,0.025061041],"study_design_scores_gemma":[0.00024742185,0.00007233338,0.000111386005,0.00005516327,0.00001708051,0.000013326856,0.000036042846,0.000008517001,0.00097792,0.000027256507,0.9982333,0.00020021087],"about_ca_topic_score_codex":0.000041234718,"about_ca_topic_score_gemma":0.0000028937309,"teacher_disagreement_score":0.06367326,"about_ca_system_score_codex":0.000034983655,"about_ca_system_score_gemma":0.000010267377,"threshold_uncertainty_score":0.9967066},"labels":[],"label_agreement":null},{"id":"W6930672044","doi":"10.5281/zenodo.12359176","title":"uber annual report 2020 pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Annual report; Earnings before interest, taxes, depreciation, and amortization; Quarter (Canadian coin); Net income; Equity (law); Profitability index","score_opus":0.01794063626026821,"score_gpt":0.25582468936852437,"score_spread":0.23788405310825617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930672044","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004621673,0.00031787535,0.00039483968,0.00035490838,0.00045834255,0.0003249527,0.00054897147,0.0005115966,0.9966263],"genre_scores_gemma":[0.0047246963,0.00012670184,0.00020710567,0.000095524,0.0011302172,6.096951e-8,0.011517318,0.005013323,0.9771851],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985289,0.00015314891,0.0002463472,0.0006561457,0.00019133305,0.00022411304],"domain_scores_gemma":[0.9988235,0.0000023595846,0.0001308537,0.00067320146,0.00025024137,0.000119811935],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00041471957,0.00016974226,0.0001378679,0.00011466609,0.00029613462,0.00045467762,0.00053554244,0.00021068889,0.06401631],"category_scores_gemma":[0.0006544575,0.00018490413,0.00007747292,0.00019354688,0.00010569799,0.0000053337503,0.00085509534,0.00019978745,0.0534665],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011077516,0.000037394577,8.102833e-7,0.000091320566,0.000058662466,0.000037074613,0.00005851066,3.765802e-7,0.02263662,0.0000854263,0.9720919,0.004890787],"study_design_scores_gemma":[0.00011450885,0.00006919643,0.00003959874,0.000049366583,0.000020037343,0.00029336815,0.00006774513,0.000004381391,0.000421464,0.000027630425,0.9986979,0.0001948041],"about_ca_topic_score_codex":0.000020427928,"about_ca_topic_score_gemma":0.0000022057795,"teacher_disagreement_score":0.02660596,"about_ca_system_score_codex":0.00003191707,"about_ca_system_score_gemma":0.0000065631993,"threshold_uncertainty_score":0.9472705},"labels":[],"label_agreement":null},{"id":"W6931025610","doi":"10.5281/zenodo.208259","title":"ddClone: Joint statistical inference of clonal populations from single cell and bulk tumour sequencing data","year":2016,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Jaccard index; Cluster analysis; Inference; Statistical model; Data set; Population; Mutation; Statistical inference; DNA sequencing; Set (abstract data type); Bayesian probability","score_opus":0.1054491283989501,"score_gpt":0.29635802406106904,"score_spread":0.19090889566211894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931025610","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07837178,0.0010451678,0.11787427,0.00066771504,0.00081931695,0.0017968507,0.060843006,0.00092600216,0.7376559],"genre_scores_gemma":[0.8523528,0.0002702031,0.012164908,0.000070500995,0.0007730178,8.3262066e-8,0.09244164,0.0036084629,0.0383184],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987816,0.00018367067,0.00024837189,0.0004806578,0.00015351652,0.00015216289],"domain_scores_gemma":[0.99889666,0.000014545139,0.00018892199,0.0006273893,0.00017633157,0.00009616995],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00024718788,0.00012272185,0.00014471133,0.00008231482,0.00024660173,0.00017526365,0.0005121553,0.00011509473,0.009694493],"category_scores_gemma":[0.0009364044,0.00012224536,0.000018633827,0.00006174272,0.00015620924,0.0000098473365,0.0012070109,0.00009938805,0.00037067916],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015608197,0.000049145994,0.0000134971015,0.00006836314,0.000022310825,0.0000015551316,0.000048689144,8.3688576e-7,0.7686473,0.00036172,0.22355154,0.0072194343],"study_design_scores_gemma":[0.0003528423,0.00011416615,0.0008135879,0.000103661194,0.000029216182,0.000011738683,0.000053658063,0.0001218359,0.007738489,0.0001620156,0.99026126,0.00023753612],"about_ca_topic_score_codex":0.00015699303,"about_ca_topic_score_gemma":0.000010284963,"teacher_disagreement_score":0.77398103,"about_ca_system_score_codex":0.000029619752,"about_ca_system_score_gemma":0.000011884429,"threshold_uncertainty_score":0.99121076},"labels":[],"label_agreement":null},{"id":"W6931142112","doi":"10.5281/zenodo.3873219","title":"ali4006/spot: Release 0.2","year":2020,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"","keywords":"Documentation; Process (computing); Work (physics); Event (particle physics)","score_opus":0.02866576748685554,"score_gpt":0.24515579285879757,"score_spread":0.21649002537194204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931142112","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008426856,0.00025187928,0.0014518785,0.00062580325,0.00024112986,0.00048064662,0.0006578456,0.0008888674,0.9945593],"genre_scores_gemma":[0.10297673,0.00076442613,0.0015152205,0.0011702986,0.0034831911,1.7874653e-7,0.053664144,0.022661693,0.8137641],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986233,0.00022573383,0.00019682263,0.0005591019,0.00017344867,0.00022159636],"domain_scores_gemma":[0.9989525,0.0000033990902,0.00014188178,0.00057495694,0.00014938667,0.00017787257],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00021341586,0.00017056383,0.00014581675,0.00010000365,0.00048313383,0.0003622195,0.00071774697,0.00018668163,0.02739408],"category_scores_gemma":[0.0008073311,0.00019480313,0.000071032315,0.00017896316,0.000100599376,0.0000042476386,0.0007568499,0.00017709783,0.008005525],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024210189,0.00004186794,8.8874975e-7,0.000065370325,0.00003732463,0.0000038068667,0.000049933737,8.038991e-7,0.08311106,0.00019516193,0.9009043,0.015565251],"study_design_scores_gemma":[0.0002304287,0.00009311524,0.000049908147,0.000029254135,0.000015632719,0.00002252883,0.000041259515,0.000017372326,0.0014807889,0.000012180473,0.99780494,0.00020260988],"about_ca_topic_score_codex":0.00002383248,"about_ca_topic_score_gemma":0.0000013636494,"teacher_disagreement_score":0.18079515,"about_ca_system_score_codex":0.000026234708,"about_ca_system_score_gemma":0.0000054899792,"threshold_uncertainty_score":0.99276686},"labels":[],"label_agreement":null},{"id":"W6931353772","doi":"10.5281/zenodo.7875164","title":"FIGURES 148–151 in Morphological and molecular characterization of twenty-five new Diploneis species (Bacillariophyta) from Lake Tanganyika and its surrounding areas","year":2023,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Museum of Nature","funders":"","keywords":"Characterization (materials science); Single specimen; Scale (ratio); Morphology (biology)","score_opus":0.030510027590430883,"score_gpt":0.24154453218617802,"score_spread":0.21103450459574713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931353772","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9749615,0.0005364814,0.0006585206,0.0002554765,0.00019467433,0.0006685119,0.0017982051,0.00035980943,0.020566773],"genre_scores_gemma":[0.8872575,0.002477288,0.00024521328,0.00010554434,0.0005085122,2.690871e-7,0.018647378,0.0041635707,0.08659473],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987502,0.00019713325,0.0002380576,0.00048560902,0.0001525187,0.00017648347],"domain_scores_gemma":[0.9993324,0.0000128474485,0.00017599095,0.000259177,0.000121497884,0.000098080796],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002279478,0.0001608712,0.00020824518,0.00016674506,0.00016670115,0.00021543041,0.00025820584,0.00019873018,0.0019907905],"category_scores_gemma":[0.00085167884,0.00017588046,0.00003232639,0.00019902117,0.00009567851,0.000012391295,0.0005419709,0.00013220315,0.00011635658],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041041418,0.00004407067,0.00016068004,0.000080149606,0.000047852096,0.000013394242,0.00021718506,8.3558683e-7,0.972428,0.00019189825,0.021971283,0.0048035616],"study_design_scores_gemma":[0.0007086534,0.00016727233,0.035733275,0.00023915173,0.00003132636,0.00002986937,0.0001529966,0.000052129006,0.01478945,0.00005540071,0.94766545,0.0003750419],"about_ca_topic_score_codex":0.000083220504,"about_ca_topic_score_gemma":0.000045221284,"teacher_disagreement_score":0.9576386,"about_ca_system_score_codex":0.000020936493,"about_ca_system_score_gemma":0.0000055204923,"threshold_uncertainty_score":0.9989215},"labels":[],"label_agreement":null},{"id":"W6931425161","doi":"10.5281/zenodo.8158515","title":"CMIP forcing datasets update timeline","year":2024,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada","funders":"","keywords":"Forcing (mathematics); Timeline; Aerosol; Greenhouse gas; Climate model; Climate change; Biomass burning; Radiative forcing; Sulfate aerosol","score_opus":0.02787370485522887,"score_gpt":0.26985023962677723,"score_spread":0.24197653477154837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931425161","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.75233907,0.0026832381,0.08569287,0.008565634,0.0022535487,0.002203054,0.0076641534,0.004539016,0.13405943],"genre_scores_gemma":[0.97005045,0.00008393052,0.0005212258,0.00019413226,0.00037172408,3.5009702e-8,0.026797097,0.00061869825,0.0013627114],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99900645,0.00012299433,0.00017584332,0.0003858385,0.00011834143,0.00019055937],"domain_scores_gemma":[0.99931574,0.0000060832967,0.000030809697,0.0004020891,0.00015639741,0.00008885429],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005132504,0.00008733055,0.00006464366,0.00007499008,0.000653707,0.0007474148,0.00042177664,0.000052644325,0.004029379],"category_scores_gemma":[0.00046297887,0.000092027505,0.000038222464,0.00019534415,0.00005901163,0.00001907225,0.0005952587,0.00010750758,0.0044795917],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025426556,0.000036004883,0.0000020464036,0.00006051172,0.000029131334,0.0000056249323,0.00008859566,0.000013737391,0.5565425,0.0010441398,0.3717081,0.07044415],"study_design_scores_gemma":[0.000118581695,0.00006442194,0.0001269694,0.000019945544,0.000008359552,0.000054018506,0.00004021429,0.00068892265,0.009884587,0.00006541557,0.9888211,0.00010749639],"about_ca_topic_score_codex":0.0000058900578,"about_ca_topic_score_gemma":5.304006e-7,"teacher_disagreement_score":0.617113,"about_ca_system_score_codex":0.000025780853,"about_ca_system_score_gemma":0.0000040142286,"threshold_uncertainty_score":0.99688107},"labels":[],"label_agreement":null},{"id":"W6931713416","doi":"10.5281/zenodo.7491266","title":"Ekspresowa Analiza Zagrożenia Agrofagiem: Cocksfoot mottle virus","year":2018,"lang":"en","type":"report","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Virus; Mottle; Host (biology); Plant virus; Transmission (telecommunications); Vector (molecular biology)","score_opus":0.06304953830141785,"score_gpt":0.2959733784121401,"score_spread":0.23292384011072226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931713416","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11610481,0.0012689315,0.004429761,0.00060679635,0.002655338,0.0019229032,0.003477729,0.0014375694,0.8680962],"genre_scores_gemma":[0.77034533,0.0036075832,0.0010980965,0.0006759089,0.00825531,5.775263e-7,0.1159996,0.008748015,0.09126958],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99712807,0.00037937725,0.00051760563,0.00093165727,0.00059884484,0.00044444553],"domain_scores_gemma":[0.9960287,0.000010330263,0.0003350003,0.0011512213,0.0022434648,0.00023124392],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0013067167,0.00029884937,0.0002840575,0.00018753995,0.0014427307,0.0008417223,0.0012326599,0.0003697843,0.01335126],"category_scores_gemma":[0.002797009,0.00033103672,0.00015387736,0.0003086719,0.00025796046,0.000015568012,0.0015980474,0.00031583934,0.0046468354],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005485533,0.00010394761,0.0000075191256,0.00011983728,0.0000939949,0.000005367151,0.00010117053,0.0000023459816,0.19742392,0.000040455434,0.7820537,0.019992843],"study_design_scores_gemma":[0.00026673838,0.00026042789,0.0008896932,0.000050955638,0.00004015639,0.00012789383,0.000054067194,0.00002260042,0.0073467037,0.000030277624,0.990567,0.00034343606],"about_ca_topic_score_codex":0.00012077917,"about_ca_topic_score_gemma":0.000008859042,"teacher_disagreement_score":0.77682656,"about_ca_system_score_codex":0.00017743022,"about_ca_system_score_gemma":0.00004694594,"threshold_uncertainty_score":0.99991417},"labels":[],"label_agreement":null},{"id":"W6939330138","doi":"10.6084/m9.figshare.13237437","title":"Additional file 1 of Development and utility assessment of a machine learning bloodstream infection classifier in pediatric patients receiving cancer treatments","year":2020,"lang":"en","type":"article","venue":"Open MIND","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Cancer; Classifier (UML); Bloodstream infection; MEDLINE; Risk assessment","score_opus":0.03729971556642966,"score_gpt":0.30278097791000164,"score_spread":0.265481262343572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6939330138","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896056,0.000007257499,0.0000049255545,0.000010157257,0.000013302559,0.00014736234,0.009379323,4.4299074e-7,0.0008316454],"genre_scores_gemma":[0.9766483,0.000012672615,0.005095324,0.000005783506,0.000018384404,0.000053513977,0.017952817,0.0000040485766,0.00020916587],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994018,0.000056163197,0.00022066574,0.00020107052,0.00006128847,0.000058990492],"domain_scores_gemma":[0.99965394,0.000041406798,0.00015443997,0.000056268123,0.000060039947,0.00003392014],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007039294,0.00005926735,0.000098589204,0.000020199572,0.000029486067,0.000013669011,0.0000497821,0.000042696163,0.054315705],"category_scores_gemma":[0.00033513186,0.000059724956,0.00001558145,0.00007806084,0.000015126561,0.0000075312014,0.000099502824,0.000045233024,0.000001963689],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029653353,0.00024067218,0.8932863,0.000028287059,0.000023489489,1.5404852e-7,0.00014543797,0.0000090533895,0.0072650127,7.0932344e-8,0.0030878084,0.095884055],"study_design_scores_gemma":[0.0003872541,0.00008983932,0.97031564,0.0000256623,0.000009772307,1.04126634e-7,0.000014189226,0.00033807688,0.0047661816,3.9566316e-7,0.0239966,0.000056308374],"about_ca_topic_score_codex":0.00006393395,"about_ca_topic_score_gemma":0.000366616,"teacher_disagreement_score":0.09582775,"about_ca_system_score_codex":0.000014393198,"about_ca_system_score_gemma":0.00015032418,"threshold_uncertainty_score":0.94654876},"labels":[],"label_agreement":null},{"id":"W6939549421","doi":"10.6084/m9.figshare.17030799","title":"Additional file 1 of Evaluating the potential for respiratory metagenomics to improve treatment of secondary infection and detection of nosocomial transmission on expanded COVID-19 intensive care units","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Metagenomics; Table (database); Intensive care; Transmission (telecommunications); Identification (biology); Intensive care unit","score_opus":0.07052564205078896,"score_gpt":0.32774072676701205,"score_spread":0.2572150847162231,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6939549421","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23656148,0.000052613774,0.000035253415,0.000015138365,0.000029476947,0.00031727942,0.76297194,0.000002829662,0.000013968066],"genre_scores_gemma":[0.568768,0.0000019118827,0.00020397654,0.0001312377,0.000089844114,0.0003462715,0.43039718,0.000008442567,0.000053093456],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994668,0.00007593504,0.0001813852,0.00016859751,0.00005652764,0.00005075381],"domain_scores_gemma":[0.99852276,0.00020598498,0.00014519735,0.00012593568,0.00096181163,0.00003831471],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003392584,0.0000640019,0.000099646895,0.000024356701,0.000069610986,0.0000071999184,0.00002910287,0.00006918039,0.06387747],"category_scores_gemma":[0.004744267,0.000054785593,0.0000647804,0.000057810896,0.000010711042,0.0000031711706,0.000021425256,0.000025092439,0.0000011088118],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019551883,0.000017549744,0.0000012432921,0.00015074461,0.000026788202,1.4426064e-7,0.0003034481,0.00005941747,0.94042647,2.1569923e-7,0.027859049,0.030959414],"study_design_scores_gemma":[0.00057593256,0.001410732,0.0015040169,0.00012945608,0.000023981427,0.0000022781282,0.0007350216,0.00013316268,0.91615427,0.0000055923992,0.07926158,0.000063963394],"about_ca_topic_score_codex":0.000009708832,"about_ca_topic_score_gemma":0.000051927294,"teacher_disagreement_score":0.33257478,"about_ca_system_score_codex":0.00002835501,"about_ca_system_score_gemma":0.00033378255,"threshold_uncertainty_score":0.9369783},"labels":[],"label_agreement":null},{"id":"W6949371972","doi":"10.5281/zenodo.12749476","title":"Smart Hemp Gummies + CBD Gummies Canada Cautioning Be Careful Stunning Uncovered Smart Hemp Chewy Candies?","year":2024,"lang":"sl","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Product (mathematics); Work (physics); Product category; Brand loyalty","score_opus":0.02744041771989214,"score_gpt":0.24547651175061963,"score_spread":0.2180360940307275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6949371972","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13007665,0.0045762793,0.0006516631,0.004239311,0.004197059,0.002292551,0.0063073873,0.00093271665,0.84672636],"genre_scores_gemma":[0.5398018,0.0004435778,0.0002461973,0.00048892974,0.0011110286,5.870082e-7,0.016277723,0.003917111,0.4377131],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9957951,0.0005605528,0.0007515502,0.0014288987,0.0006429366,0.0008209807],"domain_scores_gemma":[0.99710727,0.000029769033,0.00039785882,0.0011497916,0.00095308054,0.00036223343],"candidate_categories":["metaepi_narrow","sts","scholarly_communication","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008604364,0.0005954331,0.0005041612,0.00026822148,0.0021482143,0.0019269048,0.0012328704,0.0004134168,0.036435667],"category_scores_gemma":[0.0017912915,0.0006796525,0.00018100785,0.0005254117,0.00036220145,0.000034657438,0.0019514319,0.0006565605,0.005528419],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008370134,0.00007189108,0.000057641795,0.0006827636,0.00044384773,0.00004275086,0.0011323107,0.000024912164,0.048650697,0.00025443675,0.9422046,0.0063504525],"study_design_scores_gemma":[0.0004754966,0.00018328501,0.00041741153,0.00034179754,0.00011246187,0.00007531017,0.0029837168,0.000056557947,0.003104966,0.00003098965,0.9915291,0.00068892975],"about_ca_topic_score_codex":0.024633113,"about_ca_topic_score_gemma":0.017715989,"teacher_disagreement_score":0.40972513,"about_ca_system_score_codex":0.0007581752,"about_ca_system_score_gemma":0.00011341902,"threshold_uncertainty_score":0.9995655},"labels":[],"label_agreement":null},{"id":"W6957868866","doi":"10.60692/r97w7-mfr13","title":"Utilization of Blood Culture in South Asia for the Diagnosis and Treatment of Febrile Illness","year":2020,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Blood culture; Logistic regression; Antibiotics; Bacteremia; Cross-sectional study; Antimicrobial","score_opus":0.062398646406571626,"score_gpt":0.24906676461017982,"score_spread":0.18666811820360818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6957868866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963728,0.00003449682,0.002819817,0.000042830397,0.000048820526,0.00047554538,0.00015436125,0.000007601664,0.000043703312],"genre_scores_gemma":[0.99966335,0.0000034335308,0.0000982663,0.000020914547,0.000035894915,0.000087819426,0.00007528218,0.000003365756,0.000011647048],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994666,0.00002580844,0.00031584105,0.00008477292,0.00005032582,0.00005664987],"domain_scores_gemma":[0.9995512,0.000004861064,0.00018974593,0.00012447154,0.000106789164,0.000022948674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008469586,0.00006641129,0.00011268091,0.000022839442,0.000036346966,0.000022221773,0.00005130584,0.000059117185,0.0000022687402],"category_scores_gemma":[0.00005987506,0.000045368757,0.000038232665,0.00007293523,0.000021208081,0.0000108758,0.000015984553,0.000010151756,0.000001126184],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023806634,0.000019726103,0.7622291,0.0008588109,0.00011865419,1.2867447e-7,0.22508319,0.00015630294,0.006679508,0.0001333731,0.000046582114,0.004436592],"study_design_scores_gemma":[0.005278543,0.0009805921,0.31479445,0.00016025447,0.00023741099,0.000007040031,0.09385169,0.005738862,0.5756094,0.0000013281746,0.002989902,0.0003505053],"about_ca_topic_score_codex":0.0000060456982,"about_ca_topic_score_gemma":0.0000011752044,"teacher_disagreement_score":0.5689299,"about_ca_system_score_codex":0.000005530318,"about_ca_system_score_gemma":0.000013587942,"threshold_uncertainty_score":0.18500842},"labels":[],"label_agreement":null},{"id":"W6957942139","doi":"10.60692/wrk65-n0n16","title":"Community health worker knowledge and management of pre-eclampsia in rural Karnataka State, India","year":2016,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Island Health; University of British Columbia","funders":"","keywords":"Focus group; Thematic analysis; Community health workers; Competence (human resources); Community health; Health care; Accreditation; Qualitative research; Rural health","score_opus":0.0238830853370737,"score_gpt":0.2530332549913929,"score_spread":0.2291501696543192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6957942139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99731964,0.0000135994605,0.0015170706,0.00002543079,0.00009244013,0.00028250265,0.000048765425,0.000017127006,0.00068344007],"genre_scores_gemma":[0.99952906,0.000004060828,0.00016163956,0.000022871893,0.000010380994,0.000022688806,0.000037181984,0.0000044820817,0.00020760298],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99912155,0.00016193888,0.00045502774,0.000074947515,0.000062128966,0.00012440982],"domain_scores_gemma":[0.9993736,0.0000034727238,0.00021019301,0.00030008602,0.00006542783,0.00004722734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005876791,0.00008345474,0.00012215089,0.00007600148,0.00006143006,0.000030227186,0.00010631791,0.000051457228,0.000003112344],"category_scores_gemma":[0.000012207393,0.00006267831,0.000021990483,0.00008005941,0.000034262408,0.000025258807,0.00010838893,0.00004190335,0.000017208487],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018302009,0.000015954432,0.9455751,0.0014033369,0.000055704157,2.774726e-7,0.034078643,0.0000036497408,0.0009743928,0.00016164737,0.00014875762,0.017399484],"study_design_scores_gemma":[0.00079626596,0.000044368295,0.9926077,0.00037031932,0.000002730112,0.0000037849213,0.004466106,0.000017616263,0.0013549922,0.0000016845513,0.00025658225,0.0000778279],"about_ca_topic_score_codex":0.00003418003,"about_ca_topic_score_gemma":0.000011513932,"teacher_disagreement_score":0.04703259,"about_ca_system_score_codex":0.00004081745,"about_ca_system_score_gemma":0.000022706135,"threshold_uncertainty_score":0.2555947},"labels":[],"label_agreement":null},{"id":"W6958512110","doi":"10.6084/m9.figshare.26557955.v1","title":"Additional file 1 of Prevalence of pks + bacteria and enterotoxigenic Bacteroides fragilis in patients with colorectal cancer","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Bacteroides fragilis; Colorectal cancer; Bacteria; Bacteroidaceae; Anaerobic bacteria","score_opus":0.008847995386735408,"score_gpt":0.22309037387693334,"score_spread":0.21424237849019792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958512110","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.44098884,0.000033117383,3.333064e-8,0.0000013623146,0.000008611766,0.00008286598,0.5588543,0.0000027776694,0.000028127488],"genre_scores_gemma":[0.55492353,0.0000019818945,0.0000688496,0.0000053665217,0.00001856501,0.00020356789,0.4446531,0.00000567425,0.00011935318],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9995299,0.000020918,0.00013915845,0.00018224728,0.00005954915,0.000068201734],"domain_scores_gemma":[0.9996736,0.000072853836,0.00005760354,0.00008309721,0.00009043879,0.000022422735],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000013617626,0.0000636057,0.00007303897,0.000027654607,0.000010295732,0.00001465209,0.00006196164,0.000050794573,0.83303404],"category_scores_gemma":[0.00044594952,0.000057291276,0.000022554932,0.000056839417,0.00001629668,0.000008302678,0.000048149854,0.00003642497,0.000012424668],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010784628,0.00008207139,0.013562783,0.0011610138,0.00003528103,5.8280216e-7,0.00006739615,8.3604016e-7,0.08305732,3.731587e-7,0.8997383,0.0021861822],"study_design_scores_gemma":[0.00014010405,0.00013130053,0.94993633,0.0021531547,0.0000037438626,6.416958e-7,0.000005443951,0.000020383493,0.015802013,0.0000015126784,0.031727854,0.000077534096],"about_ca_topic_score_codex":0.0000054569978,"about_ca_topic_score_gemma":0.00005207959,"teacher_disagreement_score":0.93637353,"about_ca_system_score_codex":0.00000776671,"about_ca_system_score_gemma":0.00005889784,"threshold_uncertainty_score":0.23362704},"labels":[],"label_agreement":null},{"id":"W6958682816","doi":"10.6084/m9.figshare.28942877","title":"Additional file 1 of Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Gene; Workflow; Sample (material); Antibiotic resistance; Whole genome sequencing","score_opus":0.012817699099961742,"score_gpt":0.22611994108966804,"score_spread":0.2133022419897063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958682816","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.018239511,0.000034901692,0.000018622968,0.00002081539,0.000010577603,0.0001718868,0.9810846,0.000005229952,0.00041384454],"genre_scores_gemma":[0.47597784,9.4633646e-7,0.0004153481,0.000095820105,0.00004524648,0.00009545226,0.52197057,0.0000072937046,0.001391474],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9996087,0.000019859273,0.000113793925,0.00015316061,0.00004279071,0.00006172313],"domain_scores_gemma":[0.99933875,0.00020624851,0.00011363377,0.00017281687,0.00015463357,0.000013934721],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000025286656,0.00005998614,0.00007448954,0.000015421769,0.00008003579,0.00002736567,0.00014271971,0.00005579335,0.13643917],"category_scores_gemma":[0.00072662433,0.000047116584,0.000022997718,0.00007380039,0.000026390424,0.0000035383048,0.00008936591,0.00003257145,0.0000048089178],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001108536,0.000019442547,0.000004210363,0.00010239465,0.000013471551,3.8846434e-7,0.000007790164,0.00004288534,0.28816375,6.9172745e-7,0.70971537,0.0018187597],"study_design_scores_gemma":[0.00020212257,0.000051777522,0.00069234293,0.0005010817,0.000007386974,0.0000024030699,0.000039330524,0.00019455266,0.26169696,0.0000027822111,0.7365336,0.00007563978],"about_ca_topic_score_codex":0.0000056696676,"about_ca_topic_score_gemma":0.00034326987,"teacher_disagreement_score":0.45911402,"about_ca_system_score_codex":0.0000046222845,"about_ca_system_score_gemma":0.00008641348,"threshold_uncertainty_score":0.86435026},"labels":[],"label_agreement":null},{"id":"W6967290361","doi":"10.5167/uzh-138687","title":"Macrococcus canis and M. caseolyticus in dogs: occurrence, genetic diversity and antibiotic resistance","year":2017,"lang":"en","type":"article","venue":"Zurich Open Repository and Archive (University of Zurich)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Canis; Antibiotic resistance; Antibiotics; 16S ribosomal RNA; Genetic diversity; Multilocus sequence typing; Tetracycline; Drug resistance","score_opus":0.015306797018966629,"score_gpt":0.2307787214593067,"score_spread":0.21547192444034008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6967290361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99701667,0.0002514183,0.0001368572,0.00008464656,0.000054403612,0.00021429501,0.00005404842,0.000004234613,0.002183431],"genre_scores_gemma":[0.99676096,0.0002439075,0.0020220757,0.000014744233,0.000016935579,1.9156421e-7,0.000012746696,0.0000037320806,0.00092471106],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99910533,0.00016908611,0.00010923545,0.000415881,0.000063879415,0.0001365734],"domain_scores_gemma":[0.9992848,0.00005236648,0.00017028446,0.00034485038,0.000044957327,0.00010275032],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00027620315,0.00010552547,0.00017324627,0.000046331243,0.0014118926,0.00010647619,0.0003690587,0.00006259726,0.000004059788],"category_scores_gemma":[0.000079224184,0.00012560216,0.000023541801,0.000034469696,0.0004241006,0.000038058024,0.0020060781,0.0000758325,5.194422e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023284901,0.00007657829,0.84898096,0.00012878311,0.000036745907,0.000110276225,0.0014872407,0.0000011090774,0.14613713,0.00013561708,0.00071803667,0.0019546591],"study_design_scores_gemma":[0.000727322,0.00010085059,0.99550354,0.000061447674,0.000031950643,0.00003133368,0.0005152042,0.00004462721,0.0013103493,0.00017163972,0.0013313505,0.00017038286],"about_ca_topic_score_codex":0.0020279558,"about_ca_topic_score_gemma":0.0030460965,"teacher_disagreement_score":0.14652257,"about_ca_system_score_codex":0.000008213255,"about_ca_system_score_gemma":0.00003417778,"threshold_uncertainty_score":0.9998881},"labels":[],"label_agreement":null},{"id":"W6968756132","doi":"10.5281/zenodo.5592971","title":"Atrichopogon Kieffer","year":2014,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Seta; Apex (geometry); Dorsum; Sensillum; Appendage; Air sacs; Apposition","score_opus":0.022205209506868395,"score_gpt":0.239734664272565,"score_spread":0.21752945476569663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6968756132","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8252441,0.00005669303,0.019142538,0.0008248076,0.00028047588,0.00039281778,0.00006197009,0.0005069106,0.15348963],"genre_scores_gemma":[0.99593306,0.000015619398,0.00029247213,0.00017361525,0.00027754167,1.8471853e-8,0.0015155576,0.00039675029,0.0013953602],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.999023,0.00023576299,0.00014462875,0.00030445226,0.000114960305,0.0001771507],"domain_scores_gemma":[0.99917424,0.000006797802,0.000051546536,0.00039289024,0.00028093043,0.000093622184],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00054771494,0.00007659395,0.00006545813,0.000055123743,0.00079599244,0.00031481337,0.0004187142,0.00005897755,0.002265595],"category_scores_gemma":[0.0010864293,0.00008237048,0.00003848888,0.00014539355,0.000061758925,0.000008330381,0.00041426712,0.000079950805,0.002348072],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043316384,0.00007680041,0.000037106474,0.000026806509,0.00001754052,5.0799275e-7,0.00011759669,0.000014465543,0.80977714,0.0016980775,0.09564833,0.09254233],"study_design_scores_gemma":[0.00024153244,0.00013589296,0.0025977632,0.000004434623,0.0000047345457,0.000019780386,0.00003176849,0.00013079678,0.008711574,0.00007416242,0.98794335,0.00010421012],"about_ca_topic_score_codex":0.000004257179,"about_ca_topic_score_gemma":2.45765e-7,"teacher_disagreement_score":0.892295,"about_ca_system_score_codex":0.00001960656,"about_ca_system_score_gemma":0.0000014949686,"threshold_uncertainty_score":0.9986465},"labels":[],"label_agreement":null},{"id":"W6976767981","doi":"10.6084/m9.figshare.13237437.v1","title":"Additional file 1 of Development and utility assessment of a machine learning bloodstream infection classifier in pediatric patients receiving cancer treatments","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Cancer; Classifier (UML); Bloodstream infection; MEDLINE; Risk assessment","score_opus":0.03409762423737711,"score_gpt":0.27191866178804575,"score_spread":0.23782103755066863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976767981","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.41580564,0.000014988675,4.1379988e-7,0.000004847655,0.0000069636076,0.000090907284,0.5838515,0.000004288996,0.00022045636],"genre_scores_gemma":[0.550925,0.000003732235,0.00031336126,0.000007836057,0.000019612537,0.00010939315,0.4485756,0.000003569866,0.000041907948],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99946094,0.00004213538,0.0001913628,0.00017394533,0.00006917176,0.00006247199],"domain_scores_gemma":[0.9996183,0.000058149802,0.00014961832,0.000051144154,0.0000883549,0.000034447807],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000019912577,0.00006301813,0.00008535704,0.000022771303,0.000026117983,0.000006216869,0.000030600677,0.000050824947,0.4011308],"category_scores_gemma":[0.0013243881,0.00006501026,0.000021431706,0.00008324822,0.000004125337,0.0000050605668,0.000057702422,0.000052408865,0.000004373751],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024611978,0.00029646288,0.7055113,0.0003878989,0.00003670566,3.3389284e-7,0.00012770006,0.00002123628,0.0029616866,9.516922e-8,0.26686275,0.023769267],"study_design_scores_gemma":[0.00023050678,0.00006134846,0.9621318,0.0001315349,0.0000044859453,8.633643e-8,0.0000043074892,0.0004211397,0.0014864437,2.579173e-7,0.035472818,0.000055260807],"about_ca_topic_score_codex":0.000015030611,"about_ca_topic_score_gemma":0.00010434478,"teacher_disagreement_score":0.4011264,"about_ca_system_score_codex":0.000014556122,"about_ca_system_score_gemma":0.00011943485,"threshold_uncertainty_score":0.5994167},"labels":[],"label_agreement":null},{"id":"W6977021264","doi":"10.6084/m9.figshare.21332722","title":"Additional file 1 of Feasibility, acceptability, and preliminary effectiveness of the adapted Namaste Care program delivered by caregivers of community-dwelling older persons with moderate to advanced dementia: a mixed methods feasibility study","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; McMaster University","funders":"","keywords":"Primary care; Data collection; MEDLINE; Qualitative research","score_opus":0.029751263200772957,"score_gpt":0.31451285929037104,"score_spread":0.28476159608959806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6977021264","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4974062,0.00004364235,0.000006684324,0.0000028624247,0.000010056524,0.0013649099,0.5011334,0.0000073183724,0.00002493983],"genre_scores_gemma":[0.7850387,1.0478397e-7,0.0018913846,0.0000049888567,0.0000032496255,0.0011349894,0.21190278,0.000012504837,0.000011292924],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9968828,0.0021335941,0.00028599147,0.00034917754,0.00021154979,0.00013687248],"domain_scores_gemma":[0.9978321,0.0006555952,0.00026332715,0.0006400635,0.00055226125,0.000056647237],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000334841,0.0001551174,0.0002693167,0.000030053654,0.0003023835,0.000014108239,0.0003481385,0.000055094006,0.099217854],"category_scores_gemma":[0.0016514317,0.00013823784,0.00010045327,0.0002293554,0.00006332409,0.000011288497,0.0007949125,0.0001838231,3.3469678e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.015902655,0.016491553,0.027466545,0.011856222,0.0019999992,0.0000032842925,0.034330733,0.007841901,0.45171764,0.0000019395325,0.36811486,0.06427266],"study_design_scores_gemma":[0.0030070771,0.0067782192,0.843513,0.00093240564,0.00017212682,0.000007350027,0.06511561,0.0004266151,0.07638918,0.000010072023,0.0031515053,0.0004968612],"about_ca_topic_score_codex":0.00006085155,"about_ca_topic_score_gemma":0.00017248638,"teacher_disagreement_score":0.8160464,"about_ca_system_score_codex":0.0000520005,"about_ca_system_score_gemma":0.00015659061,"threshold_uncertainty_score":0.9016056},"labels":[],"label_agreement":null},{"id":"W6977029767","doi":"10.6084/m9.figshare.17030799.v1","title":"Additional file 1 of Evaluating the potential for respiratory metagenomics to improve treatment of secondary infection and detection of nosocomial transmission on expanded COVID-19 intensive care units","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"","keywords":"Metagenomics; Table (database); Intensive care; Transmission (telecommunications); Identification (biology); Intensive care unit","score_opus":0.07052564205078896,"score_gpt":0.32774072676701205,"score_spread":0.2572150847162231,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6977029767","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23656148,0.000052613774,0.000035253415,0.000015138365,0.000029476947,0.00031727942,0.76297194,0.000002829662,0.000013968066],"genre_scores_gemma":[0.568768,0.0000019118827,0.00020397654,0.0001312377,0.000089844114,0.0003462715,0.43039718,0.000008442567,0.000053093456],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994668,0.00007593504,0.0001813852,0.00016859751,0.00005652764,0.00005075381],"domain_scores_gemma":[0.99852276,0.00020598498,0.00014519735,0.00012593568,0.00096181163,0.00003831471],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003392584,0.0000640019,0.000099646895,0.000024356701,0.000069610986,0.0000071999184,0.00002910287,0.00006918039,0.06387747],"category_scores_gemma":[0.004744267,0.000054785593,0.0000647804,0.000057810896,0.000010711042,0.0000031711706,0.000021425256,0.000025092439,0.0000011088118],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019551883,0.000017549744,0.0000012432921,0.00015074461,0.000026788202,1.4426064e-7,0.0003034481,0.00005941747,0.94042647,2.1569923e-7,0.027859049,0.030959414],"study_design_scores_gemma":[0.00057593256,0.001410732,0.0015040169,0.00012945608,0.000023981427,0.0000022781282,0.0007350216,0.00013316268,0.91615427,0.0000055923992,0.07926158,0.000063963394],"about_ca_topic_score_codex":0.000009708832,"about_ca_topic_score_gemma":0.000051927294,"teacher_disagreement_score":0.33257478,"about_ca_system_score_codex":0.00002835501,"about_ca_system_score_gemma":0.00033378255,"threshold_uncertainty_score":0.9369783},"labels":[],"label_agreement":null},{"id":"W6980107155","doi":"","title":"Australian Group on Antimicrobial Research surveillance outcome programs - bloodstream infections and antimicrobial resistance patterns from patients less than 18 years of age, January 2020 - December 2021","year":2024,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"","keywords":"Antibiotic resistance; Antimicrobial; Outcome (game theory); Antimicrobial stewardship; Antibiotics; Drug resistance","score_opus":0.046089954436787886,"score_gpt":0.32638861918655254,"score_spread":0.28029866474976467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6980107155","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982745,0.000028526774,0.000032015163,0.0001643945,0.00042048286,0.0003248428,0.00034990732,0.000023666556,0.00038164743],"genre_scores_gemma":[0.9958226,0.00008318812,0.00034258733,0.000029509558,0.00020593153,0.000012522413,0.0014462421,0.000023414585,0.0020340078],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99837047,0.00020830272,0.000371228,0.0006156075,0.00016333065,0.00027103352],"domain_scores_gemma":[0.99926776,0.000062340245,0.00006169399,0.00039005675,0.00013340931,0.00008471478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034950927,0.0001527623,0.00018988902,0.00007021932,0.00009500092,0.0002002957,0.00015714766,0.00016839431,0.00006268643],"category_scores_gemma":[0.00012883425,0.00015718894,0.0000877386,0.00019762057,0.00016996652,0.000012629982,0.00014387863,0.0002014866,0.000016915232],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005874645,0.0003931467,0.619099,0.00009815431,0.000060706272,0.000009889377,0.000066784676,9.711536e-7,0.36720726,0.000021132711,0.010534712,0.0024494424],"study_design_scores_gemma":[0.0006908777,0.00026097495,0.95149755,0.00020083446,0.000019822919,0.000002712057,0.00008191883,0.000008356172,0.040737584,0.00002906638,0.0061596935,0.00031061663],"about_ca_topic_score_codex":0.0013731305,"about_ca_topic_score_gemma":0.009544055,"teacher_disagreement_score":0.3323985,"about_ca_system_score_codex":0.000019891711,"about_ca_system_score_gemma":0.00003643592,"threshold_uncertainty_score":0.6409979},"labels":[],"label_agreement":null},{"id":"W6992755573","doi":"","title":"Magnetic fabrics from sheeted dikes reveal regional magma flow patterns, and the spacing and dimensions of ophiolite magma-chambers, Troodos ophiolite, Cyprus / by David Gauthier.","year":2002,"lang":"en","type":"dissertation","venue":"Knowledge Commons (Lakehead University)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Dike; Ophiolite; Magma; Flow (mathematics); Igneous rock","score_opus":0.01519930500227685,"score_gpt":0.2227934505804017,"score_spread":0.20759414557812486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6992755573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873855,0.0071304934,0.000055769135,0.00022191464,0.00031365277,0.00045184096,0.0007830786,0.00003006575,0.003627685],"genre_scores_gemma":[0.9768843,0.00042457733,0.000106973544,0.000012866149,0.00011195747,0.000004526601,0.004970639,0.000045706245,0.017438447],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99798375,0.00042930577,0.00042314464,0.0007133135,0.00015699505,0.0002934895],"domain_scores_gemma":[0.9983661,0.00018437035,0.0003080385,0.0006638036,0.0002967242,0.00018095943],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00019481155,0.00039798854,0.0005227121,0.0001652562,0.00041838715,0.00009729589,0.0003488973,0.0004684964,0.00004317028],"category_scores_gemma":[0.00018050341,0.00035989197,0.0001689098,0.00027006448,0.00041621347,0.000019771334,0.00022300078,0.00035608347,0.000004305361],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004132981,0.0014117166,0.09614086,0.0019457242,0.0012388681,0.000089458066,0.015773628,0.000016373282,0.7601929,0.0023899013,0.09048088,0.026186734],"study_design_scores_gemma":[0.019902332,0.0012579467,0.61255443,0.0032120324,0.0030754074,0.00012279712,0.0077133235,0.0030852093,0.013786271,0.0009115436,0.32991934,0.004459341],"about_ca_topic_score_codex":0.0004943679,"about_ca_topic_score_gemma":0.017234342,"teacher_disagreement_score":0.7464066,"about_ca_system_score_codex":0.000042092302,"about_ca_system_score_gemma":0.00009034444,"threshold_uncertainty_score":0.9998853},"labels":[],"label_agreement":null},{"id":"W7009793193","doi":"","title":"Evaluation of MALDI-TOF mass spectrometry and Sepsityper Kit⢠for the direct identification of organisms from sterile body fluids in a Canadian pediatric hospital","year":2013,"lang":"en","type":"article","venue":"PubMed Central","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Blood culture; Identification (biology); Body fluid; Cerebrospinal fluid; Mass spectrometry; Species identification","score_opus":0.011687689510575812,"score_gpt":0.22704292650322902,"score_spread":0.21535523699265322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7009793193","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981002,0.00026068476,0.00021313617,0.00015231626,0.00032126412,0.000802942,0.00010388334,0.0000029383868,0.000042622574],"genre_scores_gemma":[0.9992468,0.00003893885,0.00021280738,0.000012959716,0.0001667303,0.00011514335,0.00015740386,0.0000086434775,0.000040597355],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99902225,0.00007958813,0.0002584838,0.00020223914,0.00013824069,0.0002991825],"domain_scores_gemma":[0.99936795,0.000028684397,0.00010675887,0.00020761244,0.00018742164,0.00010154385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00096398755,0.00006888574,0.000095561736,0.000056326433,0.000034327408,0.000035559635,0.00010933944,0.0000712151,0.000066988534],"category_scores_gemma":[0.00069155876,0.00006155137,0.000033900567,0.00010970754,0.000035745623,0.00001218953,0.000019093162,0.000032054242,0.000001147883],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008385122,0.00003237877,0.29900974,0.00001477957,0.000022893535,2.9312776e-8,0.000132755,0.0000068553018,0.6990682,0.00001064907,0.00010914735,0.001584195],"study_design_scores_gemma":[0.00029222405,0.000025880598,0.9051956,0.000001589831,0.00006399649,1.6899266e-7,0.00010545472,0.0008673488,0.09323741,0.00010605572,0.00004328278,0.00006102147],"about_ca_topic_score_codex":0.014718908,"about_ca_topic_score_gemma":0.0097998055,"teacher_disagreement_score":0.6061858,"about_ca_system_score_codex":0.00007504302,"about_ca_system_score_gemma":0.00018335665,"threshold_uncertainty_score":0.99184215},"labels":[],"label_agreement":null},{"id":"W7027324369","doi":"","title":"Clostridium ramosum Bacteremia in an Immunocompetent Patient with SARS-CoV-2 Infection: A Case Report","year":2023,"lang":"en","type":"other","venue":"Dove Medical Press (Taylor and Francis Group)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Bacteremia; Resistome; Antimicrobial; Antibiotic resistance; Phylogenetic tree; Antibiotics; Whole genome sequencing","score_opus":0.021534567825982783,"score_gpt":0.281184981420792,"score_spread":0.2596504135948092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7027324369","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9381282,0.0023612508,0.024482112,0.0002721036,0.004913397,0.0029981919,0.0003856456,0.000788258,0.025670879],"genre_scores_gemma":[0.9972746,0.000024163599,0.00016151016,0.00020256874,0.0007181779,0.00015098878,0.0007017856,0.00033776942,0.00042844808],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978492,0.00015174692,0.0005411365,0.00083103986,0.00031152004,0.00031535354],"domain_scores_gemma":[0.9987838,0.000025530895,0.00025656924,0.0006864771,0.00006859215,0.0001790328],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00039413004,0.00033416122,0.00039712194,0.00009671768,0.000064827036,0.00008578956,0.00015361821,0.00061781396,0.00018024619],"category_scores_gemma":[0.00031498392,0.000282503,0.00008369425,0.00012407312,0.00018997339,0.00001006907,0.00016730875,0.0003748341,0.000009460039],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001106053,0.0020348805,0.02910484,0.0011955831,0.00075183104,0.056156993,0.00078528124,0.000004584804,0.13720563,0.00011793863,0.008522664,0.7630137],"study_design_scores_gemma":[0.017216496,0.0064343256,0.0210664,0.00055007805,0.00073915144,0.078300364,0.0005675689,0.015741365,0.04389215,0.00014885173,0.80773985,0.0076033995],"about_ca_topic_score_codex":0.004501473,"about_ca_topic_score_gemma":0.015479798,"teacher_disagreement_score":0.79921716,"about_ca_system_score_codex":0.000025130083,"about_ca_system_score_gemma":0.000008207543,"threshold_uncertainty_score":0.9999627},"labels":[],"label_agreement":null},{"id":"W7037940301","doi":"","title":"Fire resistance cellulosic fibers for green polymer composites","year":2012,"lang":"en","type":"other","venue":"NPARC","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Fire resistance; Polymer; Cellulose fiber; Cellulose; Cellulosic ethanol","score_opus":0.013969122630723266,"score_gpt":0.2439820495083293,"score_spread":0.23001292687760605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7037940301","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008005787,0.005820028,0.00058158324,0.00085926295,0.0012343595,0.0009919063,0.00074209896,0.00015612246,0.98160887],"genre_scores_gemma":[0.02510391,0.000035421686,0.0029629814,0.00014094076,0.0010990341,0.000043721273,0.0010154173,0.00019524,0.9694033],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99921817,0.000033437394,0.00015115322,0.0003214971,0.00006810762,0.00020763779],"domain_scores_gemma":[0.99932724,0.000013030145,0.0001328816,0.0004226969,0.000033628585,0.0000704918],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008238173,0.0001661072,0.00015694842,0.000027708702,0.000053115982,0.000021977663,0.00018335879,0.00026661632,0.0012782079],"category_scores_gemma":[0.000027699543,0.00017180039,0.00010151664,0.000034020846,0.00005805629,0.0000013203022,0.000046251516,0.00005399011,0.00004917926],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017805722,0.00002078577,0.00007923671,0.00008950831,0.000028081982,1.12427905e-7,0.000010060657,1.081113e-8,0.5922228,0.00010419397,0.40640143,0.0010259687],"study_design_scores_gemma":[0.00018979837,0.000021688738,0.00007230284,0.000048373746,0.000031853542,7.1058747e-7,0.000006540014,0.0000029483683,0.090909384,0.00007323379,0.9084261,0.0002170709],"about_ca_topic_score_codex":0.00003487863,"about_ca_topic_score_gemma":0.00018237914,"teacher_disagreement_score":0.50202465,"about_ca_system_score_codex":0.0000092041255,"about_ca_system_score_gemma":0.000028709237,"threshold_uncertainty_score":0.99963474},"labels":[],"label_agreement":null},{"id":"W7038528691","doi":"","title":"Intimate Images and Authors’ Rights: Non- Consensual Disclosure and the Copyright Disconnect","year":2022,"lang":"en","type":"article","venue":"eYLS (Yale Law School)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Harm; Property (philosophy); Intellectual property; Subject (documents); Criminal law; Remedial education; Common law","score_opus":0.008439505273707277,"score_gpt":0.2451836984888544,"score_spread":0.23674419321514714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7038528691","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954024,0.00048463792,0.000069033835,0.0015165592,0.000271145,0.00029290494,0.00009743853,0.000020929212,0.0018449337],"genre_scores_gemma":[0.9965878,0.000027473188,0.0002503622,0.000413233,0.00013849244,0.00005222392,0.000112540576,0.000014068413,0.002403802],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988136,0.00028410842,0.00022136388,0.00038735403,0.000111180554,0.00018239289],"domain_scores_gemma":[0.9993578,0.00006161374,0.00008790187,0.00034656393,0.000041226813,0.00010485222],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006354454,0.00013941868,0.00016413351,0.000017079587,0.0007469284,0.00017919275,0.00016167638,0.00005651605,0.00020059283],"category_scores_gemma":[0.0001469391,0.00009875395,0.00005269388,0.000061279956,0.00046677023,0.000010107606,0.0003445599,0.00019445432,0.000007746316],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00087706454,0.00018133331,0.021268198,0.000101225196,0.00022089183,0.000021882144,0.0008700903,0.00001732103,0.90382105,0.044864964,0.02686798,0.0008879883],"study_design_scores_gemma":[0.01559667,0.0010355009,0.09561551,0.000092508024,0.00038555087,0.00084010843,0.0033015304,0.001536737,0.19093709,0.024452467,0.6638427,0.0023636303],"about_ca_topic_score_codex":0.0004125052,"about_ca_topic_score_gemma":0.00032008218,"teacher_disagreement_score":0.71288395,"about_ca_system_score_codex":0.000010226155,"about_ca_system_score_gemma":0.000029034594,"threshold_uncertainty_score":0.57448447},"labels":[],"label_agreement":null},{"id":"W7039103034","doi":"","title":"Le bas-Canada entre le moyen-age et l'age moderne.","year":2014,"lang":"fr","type":"article","venue":"QSpace (Queen's University Library)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Context (archaeology); Set (abstract data type); Identification (biology); Relation (database)","score_opus":0.006272228457570124,"score_gpt":0.1744439931025995,"score_spread":0.1681717646450294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7039103034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.55283034,0.00021154092,0.006027199,0.32837677,0.0013402213,0.00049137516,0.00030975023,0.00018092789,0.11023186],"genre_scores_gemma":[0.71354926,0.00016838715,0.0016530466,0.00086020137,0.0001644554,4.462798e-7,0.00050149637,0.00003539408,0.28306735],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99795854,0.0005085512,0.00020364947,0.00070067175,0.00017396902,0.00045461408],"domain_scores_gemma":[0.99869394,0.000061962666,0.00015787598,0.00069977593,0.00006604027,0.0003204205],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00010848639,0.00029582152,0.00028317125,0.0000695793,0.00030579363,0.0001749254,0.00053750305,0.0003192319,0.0003105533],"category_scores_gemma":[0.000108850065,0.00040654273,0.00015999524,0.00020390101,0.00021345326,0.0001248881,0.0004849272,0.0002660795,0.000029144125],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002201599,0.00054383307,0.007597087,0.00030904947,0.00021874139,0.00038906312,0.0005106841,0.0004828899,0.02704768,0.09404471,0.8664738,0.002162317],"study_design_scores_gemma":[0.0007603195,0.000079625446,0.0042138463,0.000050787305,0.00003677907,0.000001355002,0.00084599707,0.00013382707,0.022226652,0.00027627114,0.970902,0.0004724898],"about_ca_topic_score_codex":0.40187165,"about_ca_topic_score_gemma":0.13415131,"teacher_disagreement_score":0.3275166,"about_ca_system_score_codex":0.0000683155,"about_ca_system_score_gemma":0.0017165756,"threshold_uncertainty_score":0.99983865},"labels":[],"label_agreement":null},{"id":"W7083851191","doi":"","title":"Facebook's Zuckerberg urged to testify before 'grand committee' - NO CAPTION","year":2018,"lang":"en","type":"other","venue":"Internet Archive (Internet Archive)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Session (web analytics); Joint (building); International relations; Head (geology); Administration (probate law)","score_opus":0.014262340177886086,"score_gpt":0.2564697309439758,"score_spread":0.24220739076608971,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083851191","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.020940723,0.00007360142,0.011392167,0.00020600292,0.0024458277,0.0022435915,0.0011198339,0.00032986992,0.9612484],"genre_scores_gemma":[0.036677536,0.000026511583,0.0045118514,0.00053602754,0.0021477933,0.00020184266,0.0039213775,0.0005127661,0.9514643],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9965418,0.00036956574,0.0007094507,0.0014210155,0.00030420753,0.00065398635],"domain_scores_gemma":[0.99778855,0.00006640965,0.00041160136,0.0011661967,0.00013301543,0.00043422365],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002916347,0.00074890465,0.0006084957,0.0003799342,0.0000594356,0.00020557723,0.0011086822,0.00036436727,0.010449782],"category_scores_gemma":[0.0004747462,0.00074591086,0.0003714688,0.0000889845,0.00043524668,0.000007777623,0.00093040586,0.00039808123,0.010510025],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028240887,0.000114186136,0.0013565961,0.00010507769,0.00024764557,0.000011043609,0.0006226093,9.077806e-7,0.08439647,0.00011099349,0.9121614,0.0005906268],"study_design_scores_gemma":[0.0006386052,0.000796276,0.0017736593,0.00061116193,0.00006236558,0.000033739903,0.00002459588,0.00018039139,0.00494669,0.00021505177,0.9899927,0.0007247909],"about_ca_topic_score_codex":0.0045843,"about_ca_topic_score_gemma":0.0414405,"teacher_disagreement_score":0.07944978,"about_ca_system_score_codex":0.000037902984,"about_ca_system_score_gemma":0.00009752925,"threshold_uncertainty_score":0.9994992},"labels":[],"label_agreement":null},{"id":"W7083854209","doi":"","title":"Vice President Mike Pence heads to Dallas and Midland to raise cash and pitch Trump energy policy","year":2019,"lang":"en","type":"other","venue":"Internet Archive (Internet Archive)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Penny; Vice president; Cash; White (mutation); Energy (signal processing); Successor cardinal","score_opus":0.01048071219199216,"score_gpt":0.25753181387932256,"score_spread":0.2470511016873304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083854209","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.45760655,0.00183916,0.015542635,0.0024296662,0.0016441628,0.0029576875,0.0017958432,0.0002524306,0.51593184],"genre_scores_gemma":[0.19670565,0.00029320107,0.0016401024,0.0017023435,0.00075495115,0.00007766895,0.00045582012,0.00026278867,0.79810745],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971063,0.0002527077,0.0004886669,0.0014092942,0.0002148775,0.0005281201],"domain_scores_gemma":[0.99832004,0.00009728561,0.00020973528,0.0007947916,0.000048121485,0.0005300468],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001667326,0.0005683335,0.0005240995,0.00043871492,0.00003339922,0.00023815155,0.0006574137,0.0002015081,0.00041111486],"category_scores_gemma":[0.00026598934,0.0005712725,0.00012923384,0.00008687709,0.00018648797,0.0000080996915,0.001453824,0.00021812555,0.00023729412],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037092538,0.00006827993,0.002206113,0.00017092554,0.00016317659,0.000013931593,0.0014080525,0.000003154507,0.16402285,0.00049854076,0.82973224,0.0013418146],"study_design_scores_gemma":[0.0006306306,0.0005966701,0.0088502,0.0005274359,0.000037219215,0.00008616402,0.000047738074,0.00012599383,0.0060832403,0.00013457499,0.9821869,0.0006932463],"about_ca_topic_score_codex":0.032947384,"about_ca_topic_score_gemma":0.064265035,"teacher_disagreement_score":0.28217563,"about_ca_system_score_codex":0.000026429601,"about_ca_system_score_gemma":0.00012163174,"threshold_uncertainty_score":0.99967384},"labels":[],"label_agreement":null},{"id":"W7084030721","doi":"10.2966/scrip.060209.449","title":"Educational Use and the Internet – Does Australian Copyright Law Work in the Web Environment?","year":2009,"lang":"en","type":"article","venue":"SCRIPTed A Journal of Law Technology & Society","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Council of Ministers of Education","funders":"","keywords":"Statutory law; The Internet; Legislation; Scope (computer science); Copying; Government (linguistics); Work (physics); Fair use","score_opus":0.013373098057303329,"score_gpt":0.24286353113011486,"score_spread":0.22949043307281153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084030721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96203816,0.00037760948,0.000022707987,0.037157346,0.00013689553,0.00011821466,0.000003902147,0.0000055764103,0.00013958431],"genre_scores_gemma":[0.9958463,0.00020553514,0.001115503,0.0024432736,0.00009798511,0.0000038517824,0.000009019368,0.0000043469936,0.00027421492],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992151,0.00010690358,0.0003014049,0.0001462454,0.000095501025,0.00013480708],"domain_scores_gemma":[0.9994623,0.000038623508,0.0001798508,0.00023702861,0.000057085934,0.000025103986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059140223,0.00009404949,0.00012631304,0.000018235396,0.00010892231,0.00008559441,0.0003300414,0.00017761432,0.00003060144],"category_scores_gemma":[0.00008381236,0.000049694812,0.00010465928,0.00009669274,0.0007812289,0.000016775206,0.00004230991,0.00031362544,0.0000016605875],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041833534,0.0005144057,0.022501802,0.000013574767,0.00024392444,0.0000071321415,0.0031483874,0.0000051879247,0.73158723,0.19885643,0.04137867,0.0013249379],"study_design_scores_gemma":[0.007455009,0.0007170949,0.1036828,0.00020903454,0.00024013677,0.0006422312,0.0065996395,0.000065303255,0.06408702,0.06308766,0.7525163,0.000697746],"about_ca_topic_score_codex":0.000025389723,"about_ca_topic_score_gemma":0.00006257072,"teacher_disagreement_score":0.71113765,"about_ca_system_score_codex":0.000019529405,"about_ca_system_score_gemma":0.000028091179,"threshold_uncertainty_score":0.28784704},"labels":[],"label_agreement":null},{"id":"W7084030964","doi":"10.1007/978-981-95-0673-6_61","title":"Daily Interruption of Sedation in Mechanically Ventilated Patients: Kress et al.","year":2025,"lang":"en","type":"book-chapter","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"ASTER","funders":"","keywords":"Sedation; Mechanical ventilation; Sedative; Critically ill; Randomized controlled trial; Ventilation (architecture)","score_opus":0.02082665734135821,"score_gpt":0.2889316112853228,"score_spread":0.2681049539439646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084030964","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22593701,0.00019242638,0.0072166054,0.0014218915,0.001952395,0.0018260787,0.00034355192,0.00009844103,0.7610116],"genre_scores_gemma":[0.67186004,0.00028814786,0.00087364134,0.001607982,0.00003595003,0.0000145492595,0.0070519852,0.000038165137,0.31822953],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99897265,0.00003615949,0.00047163555,0.00034310992,0.000098380966,0.000078055324],"domain_scores_gemma":[0.99919397,0.000011287795,0.00021598299,0.00031314758,0.00024308077,0.000022560487],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022657478,0.0001391891,0.00017587013,0.000096549156,0.0000126488685,0.00001796415,0.00013344701,0.00025267247,0.00019924415],"category_scores_gemma":[0.0001538847,0.0001484982,0.000084164596,0.000025129564,0.00002267741,0.000004246557,0.000116516756,0.0001153009,0.000008211661],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042608866,0.000397015,0.0015001448,0.00026445722,0.00017450163,0.0000012307117,0.000080746395,0.000007446617,0.9009895,0.033769064,0.032416534,0.029973315],"study_design_scores_gemma":[0.004870875,0.0015292289,0.021826902,0.0030295346,0.0002334447,0.0000030630583,0.00008315998,0.0007533205,0.20593801,0.009452513,0.75001866,0.0022613066],"about_ca_topic_score_codex":0.000029104633,"about_ca_topic_score_gemma":0.00030485194,"teacher_disagreement_score":0.7176021,"about_ca_system_score_codex":0.000024086541,"about_ca_system_score_gemma":0.000061402396,"threshold_uncertainty_score":0.6055581},"labels":[],"label_agreement":null},{"id":"W7084058538","doi":"10.6084/m9.figshare.c.7994615.v1","title":"Identity development and adaptation in adolescents with genetic conditions: a qualitatively oriented mixed-methods study to develop strategies for optimizing clinical genetics services","year":2025,"lang":"en","type":"other","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; Women's Health Research Institute; University of British Columbia","funders":"","keywords":"Adaptation (eye); Qualitative research; Variety (cybernetics); Perception; Identity (music); Scale (ratio); Context (archaeology); Structural equation modeling; Descriptive statistics","score_opus":0.07707253802637212,"score_gpt":0.42243602742536956,"score_spread":0.3453634893989974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084058538","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.72773355,0.004811588,0.12071832,0.000092806105,0.0014856396,0.023270965,0.11747501,0.00044587062,0.003966231],"genre_scores_gemma":[0.1916454,0.000034684355,0.7064237,0.00036813156,0.00029059156,0.002354856,0.09055099,0.00032515367,0.008006476],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9982081,0.00034753967,0.00053579453,0.0006202112,0.00011144664,0.00017687891],"domain_scores_gemma":[0.9989889,0.000044370536,0.00026457402,0.00023660525,0.00039002753,0.00007548193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034468595,0.00022963811,0.00027038733,0.00014619227,0.0000729556,0.00013178984,0.00018773916,0.00018411271,0.0003072747],"category_scores_gemma":[0.0007513034,0.00023603735,0.00002633712,0.00023830164,0.00001293418,0.000009204301,0.0001844064,0.00008976267,0.000013140239],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032598118,0.012353313,0.12484949,0.05375699,0.00447137,0.0000871293,0.06102146,0.0021409579,0.018212548,0.00026575182,0.36188605,0.35769513],"study_design_scores_gemma":[0.0059470856,0.0015990206,0.71505046,0.025534652,0.00020464219,0.0000056909657,0.06402448,0.0008839076,0.001479904,0.0000882502,0.18273683,0.0024450836],"about_ca_topic_score_codex":0.000047945363,"about_ca_topic_score_gemma":0.008222976,"teacher_disagreement_score":0.59020096,"about_ca_system_score_codex":0.000024255281,"about_ca_system_score_gemma":0.00056969235,"threshold_uncertainty_score":0.9625324},"labels":[],"label_agreement":null},{"id":"W7084063372","doi":"10.36926/editorainovar-978-65-5388-337-6","title":"ENSINO E CUIDADO EM SAÚDE: INTEGRAÇÃO ENTRE SABER E CUIDAR POR MEIO DE EXPERIÊNCIAS TRANSFORMADORAS NO PRONTO ATENDIMENTO","year":2024,"lang":"pt","type":"book","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Subject (documents); Nursing care; Process (computing)","score_opus":0.014979309971460663,"score_gpt":0.26587337309012476,"score_spread":0.2508940631186641,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084063372","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1574191,0.012982804,0.0061465036,0.002184297,0.01149637,0.0072363904,0.0015972721,0.001023262,0.799914],"genre_scores_gemma":[0.2352943,0.00077419315,0.00138419,0.001033733,0.0015638843,0.0001519732,0.003996314,0.00028123887,0.75552016],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9940064,0.00032123164,0.0016658049,0.0021768676,0.00056487136,0.0012648226],"domain_scores_gemma":[0.99666196,0.000046488127,0.00037376594,0.0014883969,0.00078824046,0.00064114464],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","insufficient_payload"],"category_scores_codex":[0.00091981713,0.0013500868,0.0010194931,0.00021744655,0.00031326455,0.0008054452,0.00083451165,0.0018279223,0.006402936],"category_scores_gemma":[0.0002944439,0.0012824154,0.0009794428,0.00019025669,0.00034474398,0.000039377243,0.00037486918,0.0009052283,0.0024954164],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038702943,0.00048627297,0.00018363944,0.0013017972,0.00097644975,0.00008253682,0.0041643446,0.0000015698769,0.7619858,0.0008149374,0.21213453,0.017481107],"study_design_scores_gemma":[0.0010985932,0.00058660127,0.0002022737,0.0007742016,0.0006433847,0.00015026584,0.002682396,0.00031641612,0.13357498,0.00021584114,0.8577152,0.0020398896],"about_ca_topic_score_codex":0.00019952367,"about_ca_topic_score_gemma":0.0009919285,"teacher_disagreement_score":0.64558065,"about_ca_system_score_codex":0.00073185284,"about_ca_system_score_gemma":0.0018516136,"threshold_uncertainty_score":0.999925},"labels":[],"label_agreement":null},{"id":"W7084067905","doi":"10.64628/aam.wsjhngme3","title":"Here’s what the carbon tax means for you","year":2019,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"","score_opus":0.014806828799163486,"score_gpt":0.2513143889656013,"score_spread":0.23650756016643784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084067905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942036,0.00010944505,0.00027922736,0.0011224222,0.00050820713,0.00032248307,0.0000037638126,0.000012430537,0.003438369],"genre_scores_gemma":[0.98301965,0.000026484107,0.0002837958,0.00046758904,0.00015518746,0.000020978054,0.000052373474,0.000009126985,0.01596481],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995346,0.000024640496,0.000101894024,0.00019049963,0.000041465733,0.00010687598],"domain_scores_gemma":[0.99952495,0.000015340598,0.000031912914,0.00034170644,0.00006337243,0.00002271735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019470084,0.000058378497,0.00005300048,0.000006179783,0.00003949426,0.000085419786,0.00012984159,0.00005654581,0.00005441666],"category_scores_gemma":[0.00007693313,0.000040110797,0.000052565443,0.000025011117,0.000019640245,0.000003262672,0.000036412697,0.000025508298,0.000019463347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018441915,0.000014854903,0.003032789,0.00001018233,0.000012346947,2.4767472e-8,0.00004335312,0.0000056078543,0.9931124,0.00031323486,0.00060057413,0.0028361944],"study_design_scores_gemma":[0.0011520425,0.00033859533,0.006532105,0.000025660387,0.000033512504,0.0000071674694,0.0052085896,0.0025810269,0.6446766,0.0005559485,0.33844286,0.00044584143],"about_ca_topic_score_codex":0.000043855143,"about_ca_topic_score_gemma":0.0001375743,"teacher_disagreement_score":0.34843576,"about_ca_system_score_codex":0.0000048396564,"about_ca_system_score_gemma":0.000021084123,"threshold_uncertainty_score":0.16356708},"labels":[],"label_agreement":null},{"id":"W7084072067","doi":"10.6084/m9.figshare.30010165.v1","title":"Supplementary Material from Genomic and morphological analysis reveals long-term mammoth hybridization in British Columbia, Canada","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Morphological analysis; Morphology (biology); Morphometrics; Genetic analysis; Mammoth; Phylogenetic tree","score_opus":0.012134639088869274,"score_gpt":0.23464013991254906,"score_spread":0.22250550082367979,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084072067","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.36521044,0.000047251026,1.4928584e-7,0.000008584043,0.00008107329,0.00017310234,0.6344757,0.000002654028,0.000001038842],"genre_scores_gemma":[0.03202854,0.00004839257,0.000021922864,0.0002600442,0.00018170867,0.00007307885,0.967236,0.000006925034,0.00014338436],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9985932,0.00011566816,0.0003820228,0.00062161934,0.00010106613,0.00018643554],"domain_scores_gemma":[0.99927115,0.000024834995,0.00016283654,0.00041299567,0.00006222297,0.00006594854],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000056468685,0.00013935761,0.00030415817,0.000043161835,0.000066967026,0.00035797528,0.00025956496,0.0002381905,0.11984569],"category_scores_gemma":[0.0003687237,0.00023376475,0.00005887758,0.00013509061,0.000009510611,0.000003036385,0.00032096016,0.00010872631,0.0000018608785],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000069316798,0.000021900581,0.02074519,0.00011422904,0.00010416043,0.00007133863,6.5403054e-7,0.0000011974389,0.0032118459,1.378416e-9,0.9755959,0.00012663509],"study_design_scores_gemma":[0.000286723,0.000021713568,0.6767695,0.0002936406,0.00017300618,0.000009513131,0.000005854021,0.0000032375992,0.00024424164,0.0000012955967,0.32186738,0.00032390456],"about_ca_topic_score_codex":0.80471003,"about_ca_topic_score_gemma":0.99537367,"teacher_disagreement_score":0.6560243,"about_ca_system_score_codex":0.00008307142,"about_ca_system_score_gemma":0.0002761659,"threshold_uncertainty_score":0.953265},"labels":[],"label_agreement":null},{"id":"W7084077299","doi":"10.64628/aam.kuqujsaq3","title":"Far-right yellow vest extremists threaten Saskatchewan’s economy","year":2019,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Regina","funders":"","keywords":"VEST; Government (linguistics); Agency (philosophy); Work (physics)","score_opus":0.008075038263734909,"score_gpt":0.2216036357764316,"score_spread":0.2135285975126967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084077299","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90869915,0.00004564829,0.00028443217,0.00019428007,0.00022680481,0.00016883673,0.0000049166597,0.000035967332,0.09033998],"genre_scores_gemma":[0.92482173,0.0000073894485,0.0005956394,0.00042465254,0.00014383285,0.000008548054,0.00015701173,0.000015592565,0.0738256],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916065,0.000028854422,0.00019419193,0.00039115944,0.000044960037,0.00018017345],"domain_scores_gemma":[0.99929154,0.000008835995,0.000056010114,0.0004984475,0.00006822369,0.0000769282],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00013714122,0.00012183334,0.00011550687,0.000019416484,0.000044723845,0.000065916516,0.00017673444,0.00011565752,0.0015745872],"category_scores_gemma":[0.000025039484,0.00011136444,0.00007365547,0.00003984383,0.000035273268,0.0000060362613,0.00007098321,0.00005163205,0.00055130024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016275093,0.000039050024,0.022361798,0.000016582593,0.000020652236,6.761217e-7,0.000052493273,0.000003529735,0.97360975,0.0001795564,0.0023340997,0.0013655503],"study_design_scores_gemma":[0.00094012084,0.00014716171,0.03512169,0.000014405764,0.000019021616,0.000021442702,0.00057217217,0.0002183051,0.51823354,0.00046180436,0.44366494,0.00058541016],"about_ca_topic_score_codex":0.00006582965,"about_ca_topic_score_gemma":0.00036149714,"teacher_disagreement_score":0.4553762,"about_ca_system_score_codex":0.000014866376,"about_ca_system_score_gemma":0.00006859539,"threshold_uncertainty_score":0.9993381},"labels":[],"label_agreement":null},{"id":"W7084090011","doi":"10.64628/aap.qc7eg3t4f","title":"A-t-on les bons outils pour prévenir les violences sexuelles sur les campus ?","year":2019,"lang":"fr","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Perspective (graphical); Context (archaeology); Ethnography; Identification (biology); Government (linguistics)","score_opus":0.02125691702661975,"score_gpt":0.25819458033945586,"score_spread":0.2369376633128361,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084090011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9798408,0.005006953,0.00043371072,0.0033636834,0.0014047421,0.0003843621,0.00008650716,0.000055205594,0.009424028],"genre_scores_gemma":[0.88815147,0.00063999434,0.0006240058,0.00018280237,0.00037755107,0.000012270834,0.0001513778,0.00003398013,0.10982657],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977879,0.00028335353,0.0004898191,0.00079277717,0.000183412,0.0004627168],"domain_scores_gemma":[0.9985707,0.00016378888,0.0001999347,0.00065059535,0.00026417105,0.00015085538],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00041850496,0.00034823507,0.00030796742,0.000061003353,0.00025011785,0.00017713591,0.00036096387,0.00052471005,0.0026323134],"category_scores_gemma":[0.00056374184,0.00033103005,0.00021390045,0.000103221355,0.0002275697,0.000014152823,0.00015042326,0.0002325007,0.00050761766],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000774114,0.00039754497,0.08479516,0.00024716472,0.00009949539,0.0000034050802,0.00013125977,0.0000523751,0.8008515,0.0055959625,0.0074550007,0.10029372],"study_design_scores_gemma":[0.002518475,0.001490501,0.08909309,0.0010370241,0.00019527867,0.00007380161,0.007532618,0.0018041249,0.47497252,0.002314147,0.41663903,0.0023293926],"about_ca_topic_score_codex":0.0016610245,"about_ca_topic_score_gemma":0.0018802799,"teacher_disagreement_score":0.40918404,"about_ca_system_score_codex":0.000038426177,"about_ca_system_score_gemma":0.0001900352,"threshold_uncertainty_score":0.99991417},"labels":[],"label_agreement":null},{"id":"W7084100486","doi":"10.64628/aak.u49g9tasu","title":"Comme des bonbons, ces petits poissons maintiennent la vie dans les récifs coralliens","year":2019,"lang":"fr","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Population; Subject (documents); Set (abstract data type); Perspective (graphical)","score_opus":0.031055517764067123,"score_gpt":0.273130425893906,"score_spread":0.2420749081298389,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084100486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9528535,0.0023354343,0.0013022728,0.0026582254,0.0010105596,0.00031547563,0.00011224216,0.0000458459,0.039366428],"genre_scores_gemma":[0.9221288,0.00088963006,0.002629463,0.00028505095,0.00019510373,0.000009819617,0.00029023914,0.000035144436,0.07353678],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99809086,0.0003127076,0.00040317522,0.0005763949,0.00013167613,0.00048518105],"domain_scores_gemma":[0.9987548,0.000076554505,0.00013853483,0.0006398074,0.0001898018,0.00020050573],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00048230911,0.00027166086,0.00024561337,0.000041632793,0.00020369863,0.00019283193,0.0003267449,0.0003403771,0.0013487102],"category_scores_gemma":[0.00022973049,0.0002779803,0.00018189727,0.000121252684,0.00040685036,0.000014383634,0.00023908411,0.00017751339,0.0004387041],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038788792,0.00041054084,0.15076597,0.00020870545,0.000082416045,0.0000058772566,0.00078470586,0.00001843043,0.823676,0.009506365,0.006863571,0.0076386435],"study_design_scores_gemma":[0.0010091143,0.0004891779,0.14474404,0.00024867916,0.000105355175,0.00011244016,0.0044963816,0.00048541048,0.09551711,0.00070544594,0.75122565,0.00086120894],"about_ca_topic_score_codex":0.0007493607,"about_ca_topic_score_gemma":0.002638562,"teacher_disagreement_score":0.74436206,"about_ca_system_score_codex":0.00006309531,"about_ca_system_score_gemma":0.00011898336,"threshold_uncertainty_score":0.9999672},"labels":[],"label_agreement":null},{"id":"W7084110906","doi":"10.64628/aam.daypyfv7h","title":"Young, Canadian and Jewish: The shift from religious to cultural identity","year":2019,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"York University; University of Toronto","funders":"","keywords":"Cultural identity; Identity (music); Religious identity; Ethnic group; Cultural diversity","score_opus":0.009698062373792084,"score_gpt":0.2468560474961388,"score_spread":0.2371579851223467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084110906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99487007,0.000102864564,0.00003533007,0.0015744508,0.00028500127,0.00016030579,0.000020828704,0.000009438581,0.002941727],"genre_scores_gemma":[0.9966212,0.000012180998,0.0001624776,0.0011632404,0.000107084205,0.000004225397,0.000084496394,0.0000056220592,0.0018394666],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99946404,0.00002764989,0.00009719778,0.00022986977,0.00005286637,0.00012835833],"domain_scores_gemma":[0.99952364,0.000006691282,0.000018616876,0.00028745708,0.00004493499,0.000118637196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000111213805,0.000064481515,0.000055124106,0.000012923761,0.000074317024,0.00014997265,0.00014899258,0.000058221856,0.00012578761],"category_scores_gemma":[0.00009643992,0.000046191002,0.000024821404,0.000044317556,0.000022335777,0.000006325558,0.000067713925,0.00003934967,0.0001636868],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010373411,0.000007443529,0.32082063,0.0000033905908,0.000019889574,5.777744e-7,0.00047525705,0.0000015347865,0.6663411,0.00026103997,0.011342591,0.0007161533],"study_design_scores_gemma":[0.00018819167,0.0000458434,0.9489634,0.0000052313103,0.000009702807,0.000004401308,0.00038095866,0.000020302563,0.010995679,0.0005858982,0.03861831,0.00018209631],"about_ca_topic_score_codex":0.122680634,"about_ca_topic_score_gemma":0.52531683,"teacher_disagreement_score":0.65534544,"about_ca_system_score_codex":0.000012587273,"about_ca_system_score_gemma":0.000040311184,"threshold_uncertainty_score":0.8831615},"labels":[],"label_agreement":null},{"id":"W7084117184","doi":"10.64628/aam.uencsh9ya","title":"Canada’s claim that it champions human rights is at odds with its mining practices","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Human rights; Odds; Government (linguistics); Work (physics)","score_opus":0.0365290988919281,"score_gpt":0.3064404298511208,"score_spread":0.26991133095919273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084117184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9518763,0.00004885257,0.0000692793,0.004611095,0.00014067574,0.00013488182,0.000015668817,0.000017100647,0.04308617],"genre_scores_gemma":[0.9106209,0.0000040583004,0.00023257294,0.0016298397,0.000054977238,0.0000101479445,0.000111620335,0.000006594736,0.08732925],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99916935,0.000043656546,0.00015639311,0.00035512296,0.00010516048,0.00017031643],"domain_scores_gemma":[0.99930716,0.000025090574,0.000151014,0.00034053554,0.00011452662,0.00006166008],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000118993805,0.000114237315,0.000098322984,0.000027131295,0.00041913064,0.00006104717,0.00015054045,0.000081549064,0.00040213612],"category_scores_gemma":[0.00007954808,0.00009320668,0.000027700804,0.00007277378,0.000033483713,0.0000067457686,0.00009533103,0.000052616655,0.0000062890444],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004855533,0.00006084632,0.014170653,0.000041501564,0.00010794814,0.000004191425,0.00014363519,0.0000021046376,0.8025219,0.0011422304,0.18162335,0.00013312274],"study_design_scores_gemma":[0.0003015623,0.000049777474,0.013944414,0.000028804332,0.00002826579,0.000006717295,0.0002471968,0.000032774184,0.37418717,0.000015636722,0.61097133,0.00018635779],"about_ca_topic_score_codex":0.10346528,"about_ca_topic_score_gemma":0.9199998,"teacher_disagreement_score":0.8165345,"about_ca_system_score_codex":0.000046234585,"about_ca_system_score_gemma":0.0003335308,"threshold_uncertainty_score":0.9025048},"labels":[],"label_agreement":null},{"id":"W7084121960","doi":"10.6084/m9.figshare.29999126.v1","title":"Additional file 2 of Pre-diagnostic serum metabolome and breast cancer risk: a nested case-control study","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Health Services; University of British Columbia","funders":"","keywords":"Breast cancer; Metabolome; Cancer; BRCA2 Protein; MEDLINE","score_opus":0.00987442296202433,"score_gpt":0.25954928317738346,"score_spread":0.24967486021535912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084121960","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017095961,0.00017852329,3.518892e-8,0.000008539627,0.00005247358,0.0005970816,0.9989764,0.000009698068,0.0000062558966],"genre_scores_gemma":[0.00080426014,0.000011656885,0.000011425316,0.000055129887,0.00023399826,0.0018433915,0.9966621,0.00000928434,0.0003687874],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987912,0.00018438522,0.00030147572,0.0004688263,0.00010505779,0.00014906477],"domain_scores_gemma":[0.9978375,0.0009943362,0.0003360442,0.00048099362,0.0002835545,0.00006760876],"candidate_categories":["metaresearch","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000048702044,0.00021301187,0.0002841553,0.000060473427,0.000094675524,0.000049035883,0.00018906235,0.00024321322,0.9456802],"category_scores_gemma":[0.010910399,0.00021371027,0.000080559614,0.00010595538,0.000015158681,0.0000046475966,0.0001830613,0.00017180436,0.000030207146],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002642471,0.00011921781,0.00003137392,0.0002290229,0.00016244497,0.0000278734,0.000004763496,0.0000020273746,0.000024131043,5.497572e-9,0.9985437,0.00082905486],"study_design_scores_gemma":[0.00033183643,0.000064445725,0.07584398,0.0007336593,0.00014445449,0.000094052426,0.000024083964,0.000009689589,0.000010523663,3.9564418e-7,0.9225514,0.0001914851],"about_ca_topic_score_codex":0.00020330284,"about_ca_topic_score_gemma":0.0016850372,"teacher_disagreement_score":0.94565,"about_ca_system_score_codex":0.000010848248,"about_ca_system_score_gemma":0.00027691707,"threshold_uncertainty_score":0.99742115},"labels":[],"label_agreement":null},{"id":"W7084125166","doi":"10.1615/intjmedmushrooms.2025061743","title":"Hepatoprotective Effect of Floccularia luteovirens (Agaricomycetes) Polysaccharides on Alcohol-Induced Acute Liver Injury in Mice","year":2025,"lang":"en","type":"article","venue":"International journal of medicinal mushrooms","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Education and Child Care","funders":"","keywords":"Malondialdehyde; Liver injury; Oxidative stress; Antioxidant; Superoxide dismutase; Glutathione peroxidase; Catalase; Glutathione","score_opus":0.00997991030918686,"score_gpt":0.31312028002300424,"score_spread":0.30314036971381736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084125166","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99686563,0.000136189,0.000559728,0.000594981,0.0014018517,0.00015843642,0.0000120621,0.0000039030265,0.00026720297],"genre_scores_gemma":[0.99903274,0.00006646218,0.00018695422,0.00031420126,0.00030690344,0.00000566589,0.00001163806,0.0000083395935,0.00006709331],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99855113,0.00018779417,0.00057596015,0.00020442468,0.00035383884,0.00012685565],"domain_scores_gemma":[0.9989075,0.00010055368,0.00036797446,0.00015697411,0.0004127731,0.000054241005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077602605,0.00014115716,0.00027393596,0.0003297192,0.000026530426,0.000023288689,0.00043963926,0.00013025854,0.000028852372],"category_scores_gemma":[0.0010214478,0.00011736073,0.00015454844,0.00015018303,0.00006582839,0.000014537192,0.000087438784,0.0002661061,0.0000030563756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015486325,0.00011071551,0.007894219,0.000018870081,0.00032400998,0.000045093413,0.00010480877,0.000011459667,0.9732159,0.0001059773,0.00021091913,0.0164094],"study_design_scores_gemma":[0.0019094989,0.0012633326,0.045211267,0.00040096478,0.000079489524,0.00007239997,0.000061196195,0.0001630277,0.95027226,0.00011573488,0.0003405123,0.00011029758],"about_ca_topic_score_codex":0.00015958873,"about_ca_topic_score_gemma":0.00003147022,"teacher_disagreement_score":0.03731705,"about_ca_system_score_codex":0.00008648098,"about_ca_system_score_gemma":0.00013500481,"threshold_uncertainty_score":0.47858316},"labels":[],"label_agreement":null},{"id":"W7084134541","doi":"10.64628/aam.vs7d3teh9","title":"Groovy findings: Researching how and why music moves you","year":2019,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"","keywords":"Set (abstract data type); Focus (optics); Key (lock); Perspective (graphical); Context (archaeology)","score_opus":0.021354740492599986,"score_gpt":0.2538428064759483,"score_spread":0.2324880659833483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084134541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955335,0.00005404867,0.00019627472,0.00078309904,0.00011166356,0.00012258806,0.0000034188226,0.000016770324,0.0031785876],"genre_scores_gemma":[0.98968035,0.000017649427,0.0006041544,0.0003605602,0.00008377387,0.0000033972003,0.000038386628,0.000009414541,0.009202305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993803,0.000041960066,0.00008108643,0.00028020353,0.00007234284,0.00014409082],"domain_scores_gemma":[0.99961764,0.000015010533,0.000020419257,0.00024681244,0.000044872846,0.000055262197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025799262,0.0000687447,0.00006769132,0.000029477987,0.00006177177,0.00011925924,0.00009480133,0.000062856336,0.00014274738],"category_scores_gemma":[0.00021998826,0.00006229453,0.000027327413,0.000045691217,0.000046505927,0.0000067627925,0.00011641134,0.000058167236,0.000023107179],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010294467,0.000010459541,0.015360539,0.000017067478,0.000007079763,2.164216e-7,0.00007184813,3.7235395e-7,0.98086417,0.0002410122,0.0022782064,0.0011387478],"study_design_scores_gemma":[0.0015868557,0.00049431436,0.21716921,0.00006058649,0.000017771668,0.000031924206,0.0029509733,0.00080952316,0.63987654,0.0008764752,0.13533296,0.00079283974],"about_ca_topic_score_codex":0.000035066314,"about_ca_topic_score_gemma":0.000055384247,"teacher_disagreement_score":0.3409876,"about_ca_system_score_codex":0.000004494409,"about_ca_system_score_gemma":0.000015669733,"threshold_uncertainty_score":0.25402972},"labels":[],"label_agreement":null},{"id":"W7084137076","doi":"10.11647/obp.0490.13","title":"13. Two-period electoral competition with imperfect information","year":2025,"lang":"en","type":"book-chapter","venue":"Open Book Publishers","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Outcome (game theory); Stochastic game; Imperfect; Competition (biology); Perfect information; Quality (philosophy); State (computer science); Complete information","score_opus":0.0099622700613165,"score_gpt":0.24279189257489583,"score_spread":0.23282962251357933,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084137076","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.001810578,0.0001139946,0.0002762722,0.00046636822,0.00041825048,0.0009266091,0.000081409205,0.00004375335,0.9958628],"genre_scores_gemma":[0.03967906,0.000032383483,0.00063970266,0.0020186002,0.00031108194,0.000087179375,0.010900036,0.0000578965,0.94627404],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99878937,0.000035294703,0.00037485204,0.0004183192,0.00017546095,0.00020671668],"domain_scores_gemma":[0.998637,0.000009549901,0.00027532896,0.0006123098,0.0003731546,0.00009260791],"candidate_categories":["metaepi_narrow","scholarly_communication","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00028266705,0.00028669822,0.00026972653,0.00010551598,0.00015911563,0.0021832301,0.0005795295,0.00029281984,0.0011424229],"category_scores_gemma":[0.0000934625,0.00027689923,0.00009376528,0.000045155957,0.000090510744,0.00023083464,0.00028644362,0.0002268801,0.00007435399],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013274433,0.00011977943,0.0009065107,0.00043290816,0.0008397403,0.000010750317,0.00024906284,0.000045172652,0.050445348,0.07015208,0.8340228,0.04144841],"study_design_scores_gemma":[0.00087211776,0.0002487235,0.00016498384,0.00012826928,0.000050201124,0.000012663673,0.000031366526,0.000017809934,0.0010620184,0.00013176554,0.99686056,0.00041951027],"about_ca_topic_score_codex":0.00022481242,"about_ca_topic_score_gemma":0.00068048865,"teacher_disagreement_score":0.16283777,"about_ca_system_score_codex":0.00008063549,"about_ca_system_score_gemma":0.00056215114,"threshold_uncertainty_score":0.9999683},"labels":[],"label_agreement":null},{"id":"W7084156475","doi":"10.1007/978-3-031-98724-3_1","title":"Introduction: From the Maidan to the Russia-Ukraine War","year":2025,"lang":"en","type":"book-chapter","venue":"Rethinking political violence","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Ukrainian; World War II; Spanish Civil War; Narrative; First world war; Soviet union","score_opus":0.015822080038802894,"score_gpt":0.25573090463855,"score_spread":0.23990882459974713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084156475","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03180659,0.0072419685,0.008950018,0.4913257,0.013690459,0.0038461848,0.0016826985,0.00050049304,0.44095588],"genre_scores_gemma":[0.55396336,0.0008651968,0.0023314725,0.030654002,0.027770167,0.00007663133,0.0015917569,0.00013528124,0.3826121],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982232,0.00010320416,0.0003797626,0.00069740426,0.00024366891,0.00035278083],"domain_scores_gemma":[0.9981366,0.00018643186,0.00009565387,0.0012931027,0.00015904281,0.00012921514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049627735,0.0002670119,0.00021367872,0.000024728055,0.0003148258,0.00009846204,0.00073107943,0.00037045503,0.00026929015],"category_scores_gemma":[0.0012038584,0.00017392488,0.00015940962,0.000041574003,0.00025001093,0.0000029252828,0.00041015993,0.0005203089,0.00017162533],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055741166,0.000023029601,0.000072892864,0.00004342906,0.00012593016,0.0000036816452,0.0002396188,0.0000045563334,0.013770347,0.9203508,0.052962266,0.012347742],"study_design_scores_gemma":[0.00009788621,0.0000653002,0.00065647025,0.00049914647,0.000088535315,0.0000096916165,0.000049279137,0.0000193214,0.0033289916,0.07420935,0.9206404,0.0003356262],"about_ca_topic_score_codex":0.00016090213,"about_ca_topic_score_gemma":0.000086690845,"teacher_disagreement_score":0.86767817,"about_ca_system_score_codex":0.00005797782,"about_ca_system_score_gemma":0.00015935145,"threshold_uncertainty_score":0.7092451},"labels":[],"label_agreement":null},{"id":"W7084156551","doi":"10.5149/9781469687933_powers","title":"Cataloochee: Lost Settlement of the Smokies","year":2025,"lang":"en","type":"book","venue":"Western Carolina University, Hunter Library eBooks","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Settlement (finance); Wildlife; Population; Human settlement; National park","score_opus":0.008300383709325338,"score_gpt":0.19484571635685247,"score_spread":0.18654533264752712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084156551","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08993167,0.00017099758,0.000027609653,0.00044504262,0.00091236766,0.00067232456,0.0021007115,0.000051176678,0.9056881],"genre_scores_gemma":[0.076615945,0.000020471556,0.000032134303,0.00039690253,0.0002054534,7.8305067e-7,0.0010277116,0.000030008248,0.9216706],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988129,0.00011192568,0.00027279177,0.0004653024,0.00015372578,0.00018336457],"domain_scores_gemma":[0.9986798,0.000020003125,0.00025854982,0.0009081484,0.00007263421,0.000060834333],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00006441288,0.00026340593,0.00026971774,0.00009950912,0.00010610913,0.000045542416,0.00090140314,0.00032659725,0.00007602723],"category_scores_gemma":[0.000010673765,0.00025240637,0.000288913,0.000034076704,0.00023408848,0.000009692274,0.0014896803,0.00021259663,0.000013461352],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012295387,0.00045511388,0.24765562,0.004708822,0.0026153487,0.000110573055,0.0026167484,0.000026351388,0.09864421,0.008373295,0.62658656,0.0069778017],"study_design_scores_gemma":[0.00054700515,0.00008500494,0.008273248,0.00038179426,0.00018367467,0.0000054297143,0.000091684844,0.0000017880666,0.021630341,0.00017693204,0.968257,0.00036609836],"about_ca_topic_score_codex":0.000015123386,"about_ca_topic_score_gemma":0.000093061346,"teacher_disagreement_score":0.34167042,"about_ca_system_score_codex":0.000039348583,"about_ca_system_score_gemma":0.0005876503,"threshold_uncertainty_score":0.9999928},"labels":[],"label_agreement":null},{"id":"W7084400175","doi":"10.57745/vr01yz","title":"03.0001.2024.02.26.18.10.33.000.E.miniseed","year":2025,"lang":"de","type":"dataset","venue":"Recherche Data Gouv France","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Rimouski","funders":"","keywords":"","score_opus":0.16961571732397182,"score_gpt":0.39269056232675836,"score_spread":0.22307484500278654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084400175","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0011626361,0.0069342423,0.00047924375,0.000995597,0.0041742944,0.0011296066,0.9834782,0.00014713105,0.001499035],"genre_scores_gemma":[0.00031540345,0.009192927,0.0038513879,0.001361788,0.0024296034,0.00010143712,0.9169861,0.00011024616,0.06565107],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99094325,0.0021062538,0.0016751795,0.0036207545,0.0005417981,0.0011127597],"domain_scores_gemma":[0.98722297,0.00072710187,0.00085851335,0.010179053,0.000601413,0.0004109413],"candidate_categories":["metaresearch","metaepi_narrow","open_science","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0045117238,0.0011843328,0.0012095916,0.00021301687,0.00040033806,0.0005872,0.0057969117,0.0036183053,0.006795903],"category_scores_gemma":[0.012861271,0.0013313014,0.00033147656,0.0010144068,0.00042938083,0.000050936367,0.0032011534,0.0023401878,0.004198087],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020087659,0.00047289988,0.00014197378,0.0009885072,0.00041201577,0.000018073097,0.000040141644,0.0000026239784,0.03581869,0.000006439529,0.952701,0.009196762],"study_design_scores_gemma":[0.00078373385,0.00015483162,0.00025402,0.00052073156,0.00041397117,0.000012519444,0.0000887364,0.00025337897,0.004221141,0.000048853977,0.991992,0.0012561008],"about_ca_topic_score_codex":0.0006541347,"about_ca_topic_score_gemma":0.00042396187,"teacher_disagreement_score":0.06649207,"about_ca_system_score_codex":0.0002386444,"about_ca_system_score_gemma":0.0015232555,"threshold_uncertainty_score":0.99996144},"labels":[],"label_agreement":null},{"id":"W7084404773","doi":"10.53731/ma46p-xre36","title":"Nine simple ways to make it easier to (re)use your data","year":2013,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Directorate for Education and Human Resources; Ministry of Education, India; Ecological Society of America; Resources for the Future; World Wildlife Fund; Consortium of Universities for the Advancement of Hydrologic Science; University of Miami; U.S. Department of Agriculture; U.S. Geological Survey; Canada Excellence Research Chairs, Government of Canada; U.S. Department of Energy; U.S. Department of Defense; National Science Foundation","keywords":"Simple (philosophy); Data sharing; Key (lock); Statistician; Context (archaeology)","score_opus":0.13431806336539237,"score_gpt":0.3297179499484354,"score_spread":0.19539988658304303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084404773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9806059,0.000007161445,0.010431223,0.004208591,0.00017547555,0.00045612906,0.000094466035,0.000040661373,0.0039804108],"genre_scores_gemma":[0.9654229,0.0000035976711,0.011953021,0.006299069,0.00025220087,0.000029359393,0.0010084083,0.000020825379,0.015010563],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989503,0.000021580712,0.00021765965,0.00049896806,0.00008708877,0.0002243763],"domain_scores_gemma":[0.998322,0.000012421872,0.000028629293,0.0012704541,0.00015018324,0.00021632023],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00017470607,0.00011092805,0.00009727966,0.000030016125,0.000061267514,0.0001601419,0.0004450229,0.00007421925,0.002270713],"category_scores_gemma":[0.0008230951,0.00010204972,0.000027663766,0.0000995254,0.0000136708295,0.000010403256,0.0005818245,0.000038732753,0.0009830403],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008937498,0.000030973304,0.0018628141,0.0000035992898,0.000008729855,2.7355236e-7,0.000031414416,0.0000039296187,0.7500254,0.000039130813,0.24433805,0.0036467637],"study_design_scores_gemma":[0.00027690787,0.00013944945,0.0517041,0.0000073365054,0.000011688546,0.000003957995,0.00021051621,0.00024076724,0.08626728,0.00006333188,0.860706,0.00036871058],"about_ca_topic_score_codex":0.0005818182,"about_ca_topic_score_gemma":0.0011543242,"teacher_disagreement_score":0.6637581,"about_ca_system_score_codex":0.000008154839,"about_ca_system_score_gemma":0.000027976943,"threshold_uncertainty_score":0.9997948},"labels":[],"label_agreement":null},{"id":"W7084421303","doi":"10.5281/zenodo.17246635","title":"CANADA 🇨🇦, AUSTRALIA 🇦🇺,UK 🇬🇧 WORK VISAS AVAILABLE CALL OR WHATSAPP MR PETER OBENDE ON ☎(08143870581).","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Work (physics)","score_opus":0.03955305274536889,"score_gpt":0.25802851228961693,"score_spread":0.21847545954424805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084421303","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0020586944,0.0001112213,0.0001937686,0.00039044535,0.00067166256,0.0007208358,0.0011218913,0.0003307804,0.9944007],"genre_scores_gemma":[0.031239059,0.00009240889,0.00016688561,0.00040874895,0.00043348526,1.4673095e-7,0.005761033,0.0019652676,0.959933],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980727,0.0002516643,0.00028394273,0.00072672387,0.00028246353,0.00038250725],"domain_scores_gemma":[0.99850434,0.000012289491,0.0001609344,0.0008427657,0.00030484784,0.00017480708],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002852311,0.00026229103,0.00020976468,0.00014333437,0.0005480294,0.0005349611,0.00086461025,0.00023909671,0.10610592],"category_scores_gemma":[0.000787581,0.0002611989,0.00006357518,0.00027433623,0.00009154702,0.000005885819,0.00062636466,0.0002689765,0.0067671146],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009553908,0.000053930584,0.0000083675495,0.000082174985,0.00007049878,0.000009437369,0.000016927926,0.0000033170265,0.009023718,0.000092355294,0.98794764,0.002596108],"study_design_scores_gemma":[0.0002924804,0.000118420285,0.000167393,0.00012775837,0.000019784979,0.000010052972,0.000019237956,0.0000034636753,0.001397663,0.0000034682496,0.99756575,0.00027451495],"about_ca_topic_score_codex":0.013835061,"about_ca_topic_score_gemma":0.0047911205,"teacher_disagreement_score":0.09933881,"about_ca_system_score_codex":0.00014889045,"about_ca_system_score_gemma":0.00006817512,"threshold_uncertainty_score":0.999984},"labels":[],"label_agreement":null},{"id":"W7084426651","doi":"10.6084/m9.figshare.30262110.v1","title":"Additional file 6 of Predicting Future Performance in Powerlifting: A Machine Learning Approach","year":2025,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Training set; Task (project management); Feature (linguistics); Support vector machine; Key (lock)","score_opus":0.01269466778159244,"score_gpt":0.22942595488772977,"score_spread":0.21673128710613732,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084426651","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000012716893,0.000068632515,5.1388575e-8,0.0000038883495,0.000041827967,0.00013850171,0.99896467,0.000010461546,0.0007592493],"genre_scores_gemma":[0.000025041329,0.000007954423,0.00020031774,0.000031256834,0.00037638214,0.00035244622,0.9978974,0.0000075470816,0.0011016588],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989986,0.00006601224,0.00030072362,0.0003646343,0.000116929405,0.00015312294],"domain_scores_gemma":[0.99913675,0.00012390538,0.00027460203,0.00031023516,0.00012216129,0.00003236752],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000050718474,0.00016553389,0.0001845915,0.000084471736,0.00006324635,0.00002595447,0.00027970655,0.00033195052,0.8672711],"category_scores_gemma":[0.004922427,0.000179154,0.000076199656,0.00013225895,0.000007703915,0.0000041266344,0.0002286705,0.00037553307,0.00004694536],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010386797,0.000043499098,0.000012424945,0.0006753092,0.00001287064,4.919619e-7,0.0000046328355,0.000016325701,0.00006007878,1.844439e-8,0.9989333,0.0002306481],"study_design_scores_gemma":[0.00008885112,0.000037633414,0.00071762805,0.0015685555,0.00000413103,0.0000037060054,0.000017687073,0.00025532252,0.00004004248,8.9959435e-8,0.99712366,0.00014268483],"about_ca_topic_score_codex":0.000007718241,"about_ca_topic_score_gemma":0.000042500527,"teacher_disagreement_score":0.8672242,"about_ca_system_score_codex":0.000015610316,"about_ca_system_score_gemma":0.0001956992,"threshold_uncertainty_score":0.7305688},"labels":[],"label_agreement":null},{"id":"W7084503144","doi":"10.1007/978-3-031-95288-3_1","title":"Experimental Comparison of the Cyclic Response of Fully Grouted and Partially Grouted Masonry Walls","year":2025,"lang":"en","type":"book-chapter","venue":"Lecture notes in civil engineering","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"","keywords":"Masonry; Shear wall; Stiffness; Masonry veneer; Shear (geology); Reinforcement; Reinforced concrete","score_opus":0.012070260775700961,"score_gpt":0.24898179327871356,"score_spread":0.2369115325030126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084503144","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9841212,0.0035415695,0.009733942,0.00014205923,0.0006054351,0.0005328988,0.00007151558,0.000032377062,0.0012189895],"genre_scores_gemma":[0.9986558,0.000017298551,0.00048897346,0.000027097542,0.00005679956,0.0000069899147,0.00005187607,0.000025998977,0.0006691863],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989735,0.000044224285,0.00044424692,0.00029544492,0.000110976805,0.00013160448],"domain_scores_gemma":[0.9992079,0.00013376168,0.00017430924,0.00040157506,0.000053556116,0.000028871782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020241314,0.00021642902,0.0003305377,0.000084302534,0.000023336237,0.000013693319,0.00019321498,0.00034338192,0.000024299536],"category_scores_gemma":[0.0005599038,0.00019770075,0.00010368751,0.000053967793,0.000066940345,0.0000026759017,0.000167683,0.00021580303,2.6391302e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016339916,0.000025826115,0.000995979,0.00012826722,0.000047387923,5.968429e-7,0.00022831313,0.0019259406,0.9958608,0.00016851732,0.000018799421,0.0004361467],"study_design_scores_gemma":[0.00054362445,0.00014755744,0.012205618,0.00062199985,0.000050169816,0.000004924939,0.000012299896,0.0024963426,0.9810394,0.000093299976,0.0024270983,0.00035764778],"about_ca_topic_score_codex":0.000016883052,"about_ca_topic_score_gemma":0.00028023846,"teacher_disagreement_score":0.01482141,"about_ca_system_score_codex":0.000028481218,"about_ca_system_score_gemma":0.00005759952,"threshold_uncertainty_score":0.80620027},"labels":[],"label_agreement":null},{"id":"W7084577777","doi":"10.1145/3721241.3733995","title":"USD in Production","year":2025,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Autodesk (Canada)","funders":"","keywords":"","score_opus":0.008679024107637727,"score_gpt":0.27728042688215343,"score_spread":0.2686014027745157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084577777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9836845,0.000022854336,0.00033988841,0.00064974057,0.00022693507,0.00006432332,2.0644403e-7,0.000008724575,0.015002834],"genre_scores_gemma":[0.984859,0.0000047257417,0.0003411422,0.00013984133,0.00003744706,0.000005430815,0.00001446921,0.0000014158514,0.014596542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997175,0.000015942253,0.00007489698,0.00013130797,0.000014619376,0.00004575798],"domain_scores_gemma":[0.99983007,0.0000015285722,0.000008426062,0.00012968801,0.000023583474,0.000006732229],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010173073,0.000024926683,0.000025509973,0.000024515251,0.000014636593,0.000009605136,0.000035741305,0.000029638057,0.000022826005],"category_scores_gemma":[0.00018761905,0.00002456797,0.000010874974,0.00007373632,0.000010117573,9.0947077e-7,0.00001992882,0.000017537945,0.0000067361607],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000068659347,0.000021307813,0.01982678,0.0000047502663,0.0000016551318,4.7203724e-8,0.000006026378,0.000004262601,0.974696,0.0005515093,0.0018777979,0.0030029889],"study_design_scores_gemma":[0.00019230907,0.000016617803,0.26711506,0.000011319973,0.0000021443711,9.629773e-7,0.00008340315,0.00004584642,0.69753915,0.0006086198,0.034304902,0.00007967104],"about_ca_topic_score_codex":0.000024180466,"about_ca_topic_score_gemma":0.0002558106,"teacher_disagreement_score":0.27715686,"about_ca_system_score_codex":0.0000050261747,"about_ca_system_score_gemma":0.00001970491,"threshold_uncertainty_score":0.100185275},"labels":[],"label_agreement":null},{"id":"W7084605222","doi":"10.82265/n7kz-vv25","title":"Global Intelligibility: The Place of Communicative Competence in English for Nigerian Migrants","year":2022,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"","keywords":"Communicative competence; Competence (human resources); English language; International communication; Language assessment; First language","score_opus":0.021211610130165124,"score_gpt":0.28831287562927105,"score_spread":0.2671012654991059,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084605222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99718124,0.00008833981,0.0005543341,0.00033292605,0.00012762912,0.0003659576,0.00011048594,0.000008418551,0.001230677],"genre_scores_gemma":[0.9987391,0.000007953015,0.00071281794,0.0001942169,0.000019348416,0.0000667027,0.00009770269,0.0000038091523,0.00015835174],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992089,0.00020642583,0.00023094224,0.00018600821,0.00006520377,0.00010250546],"domain_scores_gemma":[0.999218,0.00008816725,0.0000798042,0.00048755872,0.00010813202,0.000018375536],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068301504,0.00005930169,0.000095056246,0.000010775199,0.00010724304,0.000011899588,0.00042126974,0.000026208234,0.000051757324],"category_scores_gemma":[0.0005524803,0.000050081962,0.0000532608,0.0001286461,0.00010277076,0.0000020361763,0.00027557783,0.000053700624,3.4426319e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013697997,0.0011708852,0.32250342,0.00011149301,0.00010800275,5.897913e-7,0.0067903805,0.00069853326,0.6408599,0.009993314,0.006816157,0.0095775165],"study_design_scores_gemma":[0.0053488277,0.002144937,0.41517633,0.00006365895,0.00005975218,0.000021925429,0.07920373,0.0055587054,0.24791406,0.006867668,0.23634188,0.001298532],"about_ca_topic_score_codex":0.00025149345,"about_ca_topic_score_gemma":0.0022700664,"teacher_disagreement_score":0.39294586,"about_ca_system_score_codex":0.000027717453,"about_ca_system_score_gemma":0.00005679126,"threshold_uncertainty_score":0.20422831},"labels":[],"label_agreement":null},{"id":"W7084608128","doi":"10.15468/dl.vkp3f5","title":"Occurrence Download","year":2025,"lang":"en","type":"dataset","venue":"Global Biodiversity Information Facility","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Geodetic datum; Coordinate system; Matching (statistics); Download; Range (aeronautics); Geographic coordinate conversion","score_opus":0.011858522221337776,"score_gpt":0.23296069904972475,"score_spread":0.22110217682838698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084608128","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002374529,0.000021106536,0.000010604143,0.000100396624,0.0006689187,0.0002461427,0.9964121,0.000030825257,0.0001353886],"genre_scores_gemma":[0.00007825081,0.00006116845,0.000002818933,0.000533806,0.0000036493739,0.0000043113555,0.9993145,8.904506e-9,0.0000014948646],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988868,0.000074033946,0.0003570004,0.00029079127,0.00019111914,0.00020025593],"domain_scores_gemma":[0.9986875,0.0000069213074,0.00021252572,0.0006771175,0.00032159354,0.00009432148],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023365901,0.000217177,0.00018024805,0.000050507817,0.00020456153,0.00014246732,0.00045181662,0.0004093911,0.00041138422],"category_scores_gemma":[0.0005032647,0.00024193578,0.00013889933,0.00017366592,0.000105027495,0.00002694397,0.0003897403,0.00014506455,0.007122878],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047759753,0.00003171017,0.00083066616,0.00013382964,0.000027590657,2.4401172e-7,0.0000058220444,0.0000022934464,0.00002238592,5.4373885e-8,0.9980433,0.00085431675],"study_design_scores_gemma":[0.00022841855,0.000029619227,0.0001542393,0.00000282517,0.000031816486,0.0000017042908,0.00004011915,5.9181033e-8,0.000088860805,2.9818275e-7,0.99920744,0.00021461702],"about_ca_topic_score_codex":0.00020489703,"about_ca_topic_score_gemma":0.000033332526,"teacher_disagreement_score":0.0067114937,"about_ca_system_score_codex":0.00008445541,"about_ca_system_score_gemma":0.00023434733,"threshold_uncertainty_score":0.9936502},"labels":[],"label_agreement":null},{"id":"W7084683152","doi":"","title":"Przyczyny wymierania grup etnicznych Eurazji i Afryki","year":2024,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Ethnic group; Politics; Government (linguistics); Cultural diversity; Scale (ratio); Extinction (optical mineralogy)","score_opus":0.22857159391029833,"score_gpt":0.5611027876114165,"score_spread":0.33253119370111817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084683152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97616065,0.015036893,0.000565746,0.00028606196,0.0013742275,0.00039067777,0.0000689115,0.00005023391,0.006066595],"genre_scores_gemma":[0.9927271,0.0035881128,0.00025282844,0.0002697487,0.00054125296,0.000028894285,0.000098466284,0.00006220868,0.0024314153],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99761885,0.00024211059,0.000765945,0.00067843386,0.00035027057,0.0003444075],"domain_scores_gemma":[0.9984494,0.00009260701,0.00028171297,0.00065670116,0.00029887925,0.00022069464],"candidate_categories":["metaepi_narrow","scholarly_communication","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001261206,0.0002832559,0.0004023946,0.00029450806,0.0001941889,0.00194091,0.0017109126,0.00018616146,0.0052938466],"category_scores_gemma":[0.0004610623,0.00026759607,0.00023640739,0.0005826816,0.00011824493,0.00013411109,0.00076485984,0.00030317283,0.0000710266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007047191,0.00011932574,0.034277104,0.00010880975,0.00013243589,0.000015633497,0.000067567555,0.000011524873,0.91755235,0.00013458602,0.040318772,0.007191427],"study_design_scores_gemma":[0.0004681177,0.00003310992,0.4009942,0.00044288355,0.000112766524,0.00005976215,0.00010000061,0.00017181142,0.41133398,0.0029337578,0.1826171,0.0007325031],"about_ca_topic_score_codex":0.00018462371,"about_ca_topic_score_gemma":0.000060811304,"teacher_disagreement_score":0.5062184,"about_ca_system_score_codex":0.00004081252,"about_ca_system_score_gemma":0.0001904894,"threshold_uncertainty_score":0.99997765},"labels":[],"label_agreement":null},{"id":"W7084749944","doi":"10.1109/tmrb.2025.3617956","title":"Design and Validation of a Compact Concentric-Tube Robot for Percutaneous Nephrolithotomy","year":2025,"lang":"en","type":"article","venue":"IEEE Transactions on Medical Robotics and Bionics","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Robot; Percutaneous nephrolithotomy; Footprint; Robotic arm; Robotics; Percutaneous; Software; Surgical robot","score_opus":0.021445317431135563,"score_gpt":0.28719561733451543,"score_spread":0.26575029990337984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084749944","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13440284,0.00011534174,0.86412203,0.0008341718,0.00019310738,0.00029499608,0.0000138269415,0.000009595531,0.000014086406],"genre_scores_gemma":[0.9882354,0.0004691686,0.010867612,0.00023724715,0.000021978169,0.000005995487,0.000019424613,0.0000067937403,0.00013637792],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999249,0.00006611962,0.00023946514,0.00021907937,0.00010817315,0.000118187316],"domain_scores_gemma":[0.9994684,0.00014001013,0.00005015161,0.00013691928,0.00011087599,0.00009366974],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002986517,0.00009404091,0.00014061673,0.00003812978,0.000116777504,0.000029427963,0.0000691633,0.00016504845,0.000011775876],"category_scores_gemma":[0.00009729468,0.00008584957,0.000045470282,0.000086221626,0.0001215713,0.0000035456285,0.0000022739682,0.000081865146,3.5945993e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00074455666,0.0006283224,0.00031019462,0.00037418204,0.000239128,0.0000038509347,0.00017889019,0.04459459,0.9074538,0.00076620834,0.00046274246,0.04424353],"study_design_scores_gemma":[0.0029354424,0.0014542689,0.00072602043,0.0003175367,0.00038478812,0.00015758532,0.0002498575,0.2737549,0.71459556,0.00085231545,0.004002755,0.00056894246],"about_ca_topic_score_codex":0.000010799219,"about_ca_topic_score_gemma":0.000006706024,"teacher_disagreement_score":0.85383254,"about_ca_system_score_codex":0.000010891582,"about_ca_system_score_gemma":0.00012006581,"threshold_uncertainty_score":0.35008436},"labels":[],"label_agreement":null},{"id":"W7085008801","doi":"10.29245/2578-3025/2025/3.1229","title":"New Insights into the Potential of Obicetrapib, a Cholesteryl Ester Transfer Protein Inhibitor, to Reduce Vascular Contributions to Cognitive Impairment and Dementia","year":2025,"lang":"en","type":"article","venue":"Journal of Cardiology and Cardiovascular Sciences","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Apolipoprotein E; Dementia; Disease; Cholesterylester transfer protein; LRP1; Cerebral amyloid angiopathy; Cognitive decline; Alzheimer's disease; Lipoprotein","score_opus":0.008010322430315119,"score_gpt":0.26047812076442217,"score_spread":0.25246779833410704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7085008801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.914646,0.008264761,0.07579191,0.0006264757,0.00024557218,0.00036875313,0.0000035274459,0.0000021455494,0.00005081379],"genre_scores_gemma":[0.99882376,0.00028434157,0.00047156404,0.0001605301,0.00022327481,0.000012459268,0.0000017959375,0.000003188832,0.000019094994],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986878,0.00033817938,0.00034613698,0.00027797284,0.00020225375,0.00014765182],"domain_scores_gemma":[0.9992663,0.000022772198,0.000051963245,0.00018440724,0.00036159993,0.00011291049],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001590576,0.00011137686,0.0003345464,0.000121908924,0.00021297166,0.00006174807,0.00018375882,0.00009693576,0.0000014037938],"category_scores_gemma":[0.00024148791,0.000077488316,0.00033500863,0.00023686,0.00025436518,0.000018643907,0.000100808196,0.000096867436,3.9361493e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002057687,0.000026086074,0.002453291,0.000034497778,0.002237158,0.0000057855123,0.00070741324,0.0006234067,0.9729995,0.00020923787,0.0002547396,0.020243092],"study_design_scores_gemma":[0.005005244,0.0028412226,0.3687276,0.00053862046,0.0024121765,0.00032152413,0.004328728,0.000021277834,0.5847476,0.0012229098,0.029263487,0.0005695725],"about_ca_topic_score_codex":0.00002498609,"about_ca_topic_score_gemma":0.000012332402,"teacher_disagreement_score":0.38825187,"about_ca_system_score_codex":0.000009245544,"about_ca_system_score_gemma":0.00022089004,"threshold_uncertainty_score":0.31598818},"labels":[],"label_agreement":null},{"id":"W7085094525","doi":"10.20383/103.01403","title":"Chlorine Partitioning and Atmospheric Measurements During Continental Winter: Gas and particle-phase data from Toronto, Canada (2019)","year":2025,"lang":"en","type":"dataset","venue":"Federated Research Data Repository","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Chlorine; Air quality index; Aerosol; Ozone; Hydrogen chloride; Atmospheric chemistry; Plume; Wind speed; Wind direction","score_opus":0.08780921093542352,"score_gpt":0.36416845760300987,"score_spread":0.2763592466675864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7085094525","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2654184,0.0030000755,0.0000046564455,0.000095724194,0.0005748854,0.00030624494,0.7305538,0.000011932433,0.000034252258],"genre_scores_gemma":[0.05893017,0.0009094445,0.00006572349,0.000034540342,0.0004791604,0.000020241989,0.9389303,0.000012911235,0.00061752985],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99696743,0.00043461766,0.00045526787,0.0013080952,0.0004421877,0.0003923866],"domain_scores_gemma":[0.9969584,0.00006836876,0.00013337506,0.002331398,0.00028636845,0.00022211405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007993043,0.00023214915,0.00025638763,0.000009529519,0.00072689174,0.00073795073,0.0009227708,0.00018685409,0.00006997798],"category_scores_gemma":[0.0011790685,0.00024266423,0.00001397482,0.000074757394,0.00012499014,0.00006123429,0.0031327964,0.00032645656,0.0000011188804],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019229254,0.00009273843,0.00097358116,0.00010301311,0.00016334442,0.00003539057,0.0000035032306,1.9489472e-7,0.18699795,6.8132785e-8,0.8112732,0.00016471086],"study_design_scores_gemma":[0.0026067295,0.0001635904,0.0050618243,0.0004581258,0.00014343034,0.00005338703,0.00029719423,0.0009901292,0.046411686,0.0000011354795,0.9432176,0.0005951744],"about_ca_topic_score_codex":0.5811536,"about_ca_topic_score_gemma":0.7357286,"teacher_disagreement_score":0.20837647,"about_ca_system_score_codex":0.00013707331,"about_ca_system_score_gemma":0.00083372404,"threshold_uncertainty_score":0.989556},"labels":[],"label_agreement":null},{"id":"W7085759763","doi":"10.5281/zenodo.17296862","title":"WEEX Referral Code In Global: 3AND (WEEX Sign Up Bonus 30k USDT)","year":2025,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Code (set theory); Sign (mathematics); Referral; Payment","score_opus":0.037783739384534325,"score_gpt":0.29133917312072327,"score_spread":0.25355543373618894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7085759763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8722877,0.0001779469,0.002948914,0.0013235133,0.00039039608,0.0005787321,0.00025575212,0.0003352558,0.12170181],"genre_scores_gemma":[0.9935231,0.000043876473,0.00012504816,0.00023720549,0.00008406664,7.745395e-8,0.0015026804,0.00021524631,0.0042686854],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99859464,0.00027758288,0.00027337795,0.00045200516,0.00013360269,0.00026876768],"domain_scores_gemma":[0.9990843,0.000007861577,0.00006538767,0.00045920422,0.0002964073,0.00008681764],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005420451,0.000117507734,0.00011768599,0.00008853419,0.0005520879,0.00037970813,0.00055215386,0.00010540143,0.0012772434],"category_scores_gemma":[0.0009554656,0.00013295174,0.00004380294,0.0004056493,0.000101983096,0.000015272113,0.00064916885,0.00013253732,0.00064427947],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031661897,0.00026397232,0.0005694858,0.00010432092,0.00006124766,0.000008381131,0.00029766303,0.000050325027,0.6519913,0.0040830737,0.2638293,0.07842432],"study_design_scores_gemma":[0.00074640656,0.00011686734,0.016353508,0.000030063153,0.000008713368,0.000018324112,0.0001954974,0.0001138577,0.007120277,0.00024779592,0.97488046,0.00016824057],"about_ca_topic_score_codex":0.0000433963,"about_ca_topic_score_gemma":0.000014163527,"teacher_disagreement_score":0.71105117,"about_ca_system_score_codex":0.000111079054,"about_ca_system_score_gemma":0.000013046653,"threshold_uncertainty_score":0.9996357},"labels":[],"label_agreement":null},{"id":"W7095179479","doi":"","title":"Overview","year":2013,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Reproduction; Government (linguistics); Due diligence; Permission; Work (physics); Diligence","score_opus":0.02436195933343335,"score_gpt":0.26704915504154975,"score_spread":0.2426871957081164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7095179479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98287225,0.00009527345,0.00032060416,0.0003172905,0.00007955929,0.00008438045,5.108276e-7,0.000016601756,0.01621354],"genre_scores_gemma":[0.99013484,0.000020632157,0.0010061336,0.0005608685,0.00007216262,0.000010805127,0.000023703478,0.0000038515764,0.00816702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997322,0.000012850284,0.00006687486,0.000103521925,0.000023981896,0.000060587638],"domain_scores_gemma":[0.9997527,0.0000019845575,0.000012390169,0.00016142537,0.000042563337,0.000028956976],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004288632,0.00003190954,0.000027552196,0.000005542288,0.000020869104,0.00002878272,0.000054371143,0.000027706146,0.0014660382],"category_scores_gemma":[0.00005178,0.000027580627,0.000021584134,0.000021489866,0.000010383425,0.000001449642,0.000028588865,0.000012278905,0.00047715317],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[5.328996e-7,0.000009892118,0.0024162247,0.0000031575528,0.0000025258419,2.2546049e-8,0.000003225433,1.168059e-7,0.98034704,0.00036162487,0.011772712,0.005082915],"study_design_scores_gemma":[0.00036511972,0.000094824354,0.34855685,0.000007967021,0.0000058635856,0.00000913649,0.00010009358,0.00013619283,0.35652196,0.0011229967,0.29275984,0.00031913506],"about_ca_topic_score_codex":0.000052490377,"about_ca_topic_score_gemma":0.000014314506,"teacher_disagreement_score":0.6238251,"about_ca_system_score_codex":0.0000015399976,"about_ca_system_score_gemma":0.000007568372,"threshold_uncertainty_score":0.99944675},"labels":[],"label_agreement":null},{"id":"W7096700511","doi":"","title":"RESEARCH ARTICLE A Side by Side Comparison of Bruker Biotyper and VITEK MS: Utility of MALDI-TOF MS","year":2016,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Research article; Identification (biology); Clinical microbiology; Genus; Taxonomy (biology)","score_opus":0.05274534877184975,"score_gpt":0.3573609493300021,"score_spread":0.3046156005581524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7096700511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99658525,0.00017754782,0.00043933315,0.00034418996,0.000027814945,0.00015199576,0.000030265073,0.000007480853,0.00223615],"genre_scores_gemma":[0.9983582,0.000021462905,0.00043686223,0.000027428772,0.000024108891,0.000005350163,0.00001659104,0.0000075684993,0.0011024113],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892795,0.00014810867,0.00033145864,0.0002802506,0.00013704844,0.00017519892],"domain_scores_gemma":[0.99914277,0.00008665863,0.00007498757,0.00036820624,0.00025500514,0.00007235384],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064727303,0.000072469105,0.00015255625,0.000031754596,0.00004108578,0.000013674945,0.00011030584,0.00009904052,0.00026324685],"category_scores_gemma":[0.0004799412,0.000052466174,0.000037966816,0.0000919111,0.0003134494,0.000006226997,0.00012008427,0.000050021998,0.000009608999],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008008301,0.000121772515,0.079239905,0.000024770326,0.000013107592,7.58426e-8,0.00005479994,7.119594e-8,0.91320544,0.000052443116,0.0027481474,0.0044593853],"study_design_scores_gemma":[0.00031551637,0.000113186856,0.1002943,0.000014271377,0.000004590089,7.8688953e-7,0.00018022057,0.00007000907,0.89628416,0.00007396001,0.0025862944,0.000062716725],"about_ca_topic_score_codex":0.0003507668,"about_ca_topic_score_gemma":0.00026199615,"teacher_disagreement_score":0.021054396,"about_ca_system_score_codex":0.000005498126,"about_ca_system_score_gemma":0.000036326663,"threshold_uncertainty_score":0.28823683},"labels":[],"label_agreement":null},{"id":"W7098937818","doi":"","title":"IMPACT OF FUEL COMPOSITION ON EMISSIONS AND PERFORMANCE OF GTL KEROSINE BLENDS IN A CESSNA CITATION II","year":2011,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Jet fuel; Turbofan; Jet engine; Range (aeronautics); Particulates; Jet (fluid); Engine power; Fuel efficiency; Smoke","score_opus":0.030539752649326464,"score_gpt":0.2798863930715639,"score_spread":0.24934664042223742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7098937818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985343,0.000015869622,0.00003941399,0.000010725627,0.000018361805,0.000058298043,0.0000069629614,0.0000029018508,0.0013131346],"genre_scores_gemma":[0.99936944,0.000031187792,0.00045203473,0.0000072126127,0.00000802622,0.0000021529902,0.00005650315,0.0000031562354,0.00007028833],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996243,0.000020712812,0.00016406583,0.00010390326,0.00003503081,0.000051962463],"domain_scores_gemma":[0.99972594,0.0000052318746,0.00007164326,0.00011034993,0.00006380143,0.00002302346],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009431209,0.00004680823,0.00006963121,0.000043522985,0.00002036742,0.0000026058112,0.000035954545,0.000044020762,0.000048453272],"category_scores_gemma":[0.000029951394,0.000039611445,0.00002388221,0.00006270754,0.00003251252,0.0000047074286,0.000023701621,0.00002325087,2.8117884e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012809953,0.000105055835,0.09041944,0.0000255208,0.000004898656,3.04297e-8,0.0002328248,0.0000044491508,0.9082166,0.000038250317,0.0000137310935,0.0008111272],"study_design_scores_gemma":[0.00021769927,0.0006002279,0.6855731,0.00002461968,0.0000029163803,7.6544785e-7,0.000028218386,0.00024438257,0.31324527,0.000023451375,0.0000026124844,0.000036737158],"about_ca_topic_score_codex":0.0000883613,"about_ca_topic_score_gemma":0.000023122437,"teacher_disagreement_score":0.5951537,"about_ca_system_score_codex":0.000005809029,"about_ca_system_score_gemma":0.00002381912,"threshold_uncertainty_score":0.1615308},"labels":[],"label_agreement":null},{"id":"W7099419574","doi":"","title":"RESEARCH ARTICLE Open Access Lenz et al. BMC Infectious Diseases 2012, 12:85","year":2016,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Etiology; Disease; Infectious disease (medical specialty); Research article; University hospital; Epidemiology","score_opus":0.12211381229340805,"score_gpt":0.4450130090081186,"score_spread":0.3228991967147105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7099419574","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97698575,0.00006186888,0.0018808492,0.0049904305,0.00017972027,0.0003472384,0.000022070115,0.000044652825,0.015487431],"genre_scores_gemma":[0.9824061,0.00006742741,0.00014575354,0.0014539505,0.00008621004,0.000050690876,0.000031042666,0.00001546423,0.015743397],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998715,0.00028771206,0.00018210104,0.0004182771,0.00013954603,0.00025739218],"domain_scores_gemma":[0.99898595,0.0000797825,0.000041295312,0.0005497243,0.00020952402,0.0001337268],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00074664294,0.00008616298,0.00009007706,0.000043715685,0.00014342346,0.0005274009,0.00064683094,0.000057642163,0.0011497809],"category_scores_gemma":[0.00082465226,0.00006066252,0.000044071734,0.00011111688,0.00012852818,0.0000626016,0.0010735863,0.000057262052,0.00022855328],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005313556,0.0001358033,0.09020988,0.000005932391,0.000011662581,4.774507e-7,0.000007699483,0.0000010681099,0.7889726,0.00068569306,0.11611111,0.003804934],"study_design_scores_gemma":[0.001735618,0.00022484644,0.42360798,0.000036556772,0.000011268934,0.0000072480443,0.00008209355,0.000027333406,0.26051766,0.0023571425,0.31102598,0.00036627584],"about_ca_topic_score_codex":0.0002373876,"about_ca_topic_score_gemma":0.0016721465,"teacher_disagreement_score":0.52845496,"about_ca_system_score_codex":0.000019950208,"about_ca_system_score_gemma":0.0001427141,"threshold_uncertainty_score":0.9997633},"labels":[{"model":"gemma","categories":["insufficient_payload"],"domain":null,"study_design":"not_applicable","genre":"other","about_ca_system":false,"about_ca_topic":false,"confidence":"high"},{"model":"gpt","categories":["insufficient_payload"],"domain":null,"study_design":"not_applicable","genre":"other","about_ca_system":false,"about_ca_topic":false,"confidence":"low"}],"label_agreement":"agree"},{"id":"W7101133097","doi":"","title":"and the Canadian Association for Clinical Microbiology and Infectious Diseases we","year":2015,"lang":"en","type":"article","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Clinical microbiology; Infectious disease (medical specialty); Public health; Association (psychology); MEDLINE","score_opus":0.034731477540210456,"score_gpt":0.3116634500935521,"score_spread":0.2769319725533417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7101133097","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993328,0.00042756245,0.0001262701,0.0045807185,0.00029397514,0.00026526756,0.000037102447,0.000009566188,0.00093157386],"genre_scores_gemma":[0.99781233,0.000091066904,0.0000628108,0.00059051655,0.00014004097,0.000011314153,0.00007164937,0.0000030921913,0.0012171617],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99958473,0.00009376545,0.00010517537,0.00012746858,0.000010793545,0.00007807082],"domain_scores_gemma":[0.99962527,0.000071665374,0.00003958026,0.00007649942,0.00009255104,0.00009445857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005295433,0.00003656177,0.000064325686,0.000009143859,0.00008309368,0.00004435515,0.000028484163,0.00008792839,0.0000022780264],"category_scores_gemma":[0.0013811523,0.000025774838,0.000021819325,0.0000131693205,0.00007609934,0.0000014420286,0.000022098031,0.000024599816,0.0000012323039],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017362193,0.000035517765,0.93017465,0.000013434901,0.00008469847,1.4321647e-7,0.00012376178,4.978637e-7,0.019865667,0.003327896,0.040172994,0.0060271025],"study_design_scores_gemma":[0.00852683,0.0004633641,0.15608336,0.000006492827,0.00012380883,0.000029793557,0.0002790014,0.00033908628,0.0009595145,0.004535125,0.82830995,0.00034369587],"about_ca_topic_score_codex":0.002661912,"about_ca_topic_score_gemma":0.1426677,"teacher_disagreement_score":0.78813696,"about_ca_system_score_codex":0.000015902793,"about_ca_system_score_gemma":0.00009309068,"threshold_uncertainty_score":0.87297636},"labels":[],"label_agreement":null},{"id":"W7115014857","doi":"10.1093/pch/pxaf116.026","title":"26 Derivation and validation of a clinical decision rule to discriminate bacteremia from contaminants among children with a positive blood culture in the emergency department","year":2025,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children; Université de Montréal; SickKids Foundation; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Bacteremia; Blood culture; Clinical prediction rule; Emergency department; Sepsis; Retrospective cohort study; Clinical judgment","score_opus":0.012672387549447892,"score_gpt":0.3142412411587742,"score_spread":0.30156885360932634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7115014857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970776,0.00047647167,0.0010124522,0.0005606073,0.00010745283,0.0006453281,0.00007590916,0.0000062308245,0.00003795358],"genre_scores_gemma":[0.99682677,0.0010289847,0.0011545846,0.00032623086,0.00011022437,0.000019005682,0.0005181337,0.0000073437054,0.000008727945],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99864453,0.00022710342,0.0005386426,0.00033886722,0.00011552953,0.00013532818],"domain_scores_gemma":[0.9993266,0.00005011946,0.00022802841,0.00023525485,0.00009832581,0.00006168504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006766255,0.00010368461,0.00018168266,0.000054411954,0.00010677096,0.000022348839,0.00012222806,0.00009398848,0.0000026628866],"category_scores_gemma":[0.00039854323,0.00007476052,0.000038528702,0.00022296704,0.000025193547,0.000008823603,0.000062860585,0.00011274757,6.512201e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000092215094,0.00021486291,0.98625094,0.000014796298,0.000024716228,2.1613532e-7,0.00063612877,0.0000030938763,0.0013309586,0.000027632981,0.00021004691,0.011194406],"study_design_scores_gemma":[0.0007285912,0.00022550173,0.99655956,0.00005435929,0.00004104753,0.0000010264595,0.00012895346,0.000006652302,0.0020258815,0.000093091505,0.00006215701,0.00007317234],"about_ca_topic_score_codex":0.00031385125,"about_ca_topic_score_gemma":0.0010249866,"teacher_disagreement_score":0.011121234,"about_ca_system_score_codex":0.0000131827255,"about_ca_system_score_gemma":0.00008071049,"threshold_uncertainty_score":0.30486456},"labels":[],"label_agreement":null},{"id":"W7115579753","doi":"10.64898/2025.12.12.694010","title":"Rapid identification of microbial pathogens and antimicrobial resistance from bloodstream infections using long-read sequencing","year":2025,"lang":"","type":"article","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Turnaround time; Nanopore sequencing; Identification (biology); DNA sequencing; DNA extraction; Gold standard (test); Multiplex polymerase chain reaction; Antibiotic resistance; Antimicrobial","score_opus":0.012199901062218015,"score_gpt":0.22599538168893032,"score_spread":0.2137954806267123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7115579753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907413,0.0020879286,0.0043828175,0.00010719861,0.0012297457,0.00052192697,0.00086972496,0.000050854334,0.000008493636],"genre_scores_gemma":[0.9963297,0.0007032469,0.0024569072,0.000087096385,0.0003176344,0.0000139951135,0.0000056429903,0.00005460438,0.000031138854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967567,0.00032151313,0.001179681,0.0011637947,0.00014548913,0.00043285015],"domain_scores_gemma":[0.9970696,0.00006462444,0.0007519507,0.0011380266,0.0008272072,0.00014856856],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000690934,0.0004268882,0.0004806227,0.00024427308,0.00045571246,0.00029448292,0.0003044593,0.00051143486,0.000038621718],"category_scores_gemma":[0.00075236056,0.0005593693,0.00016817605,0.0007339716,0.00039677846,0.00004861641,0.00022030725,0.00023696864,0.0000064192204],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005910595,0.00023299325,0.028086595,0.00036485348,0.00022145644,0.000004022028,0.000015813062,0.000016829268,0.97085875,0.000057586632,0.00006969039,0.000012293022],"study_design_scores_gemma":[0.0007205321,0.000033034044,0.07544877,0.0004793705,0.0003449082,5.1432902e-8,0.000013977891,0.00023740463,0.9214622,0.0000010226272,0.000834614,0.00042411673],"about_ca_topic_score_codex":0.0002417399,"about_ca_topic_score_gemma":0.000112077556,"teacher_disagreement_score":0.04939656,"about_ca_system_score_codex":0.0001897433,"about_ca_system_score_gemma":0.00090521475,"threshold_uncertainty_score":0.99968576},"labels":[],"label_agreement":null},{"id":"W7117325755","doi":"10.1128/spectrum.02511-25","title":"Evaluation of the Bruker MALDI Biotyper (MBT) subtyping module for detection of <i>Klebsiella pneumoniae</i> carbapenemase (KPC) in <i>Enterobacterales</i> in a Canadian clinical microbiology laboratory","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Vancouver Infectious Diseases Centre; University of British Columbia; Vancouver Coastal Health","funders":"","keywords":"Subtyping; Clinical microbiology; Carbapenem; Infection control; Plasmid; Pathogenic organism; Clinical Practice","score_opus":0.014981086972242458,"score_gpt":0.2863669363370795,"score_spread":0.271385849364837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7117325755","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973903,0.00032727874,0.000037754966,0.00062807894,0.0007384847,0.00064488186,0.00015807162,0.0000039865067,0.00007122171],"genre_scores_gemma":[0.9992225,0.00002625454,0.00005774011,0.0003915698,0.000043033433,0.000032406755,0.00014696742,0.000010612237,0.00006890489],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997906,0.00066782045,0.0006646066,0.0004259193,0.000025053667,0.0003105685],"domain_scores_gemma":[0.9990774,0.00005102213,0.00019915009,0.00041044093,0.00022679262,0.000035224442],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021047385,0.00013789692,0.00027914924,0.00016175068,0.00004855759,0.0000072977828,0.0002396276,0.00036554813,0.000012328163],"category_scores_gemma":[0.0005112124,0.00012776053,0.000121031764,0.0002760044,0.00019682577,0.0000052765695,0.00007795201,0.0001528943,0.0000016381538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007157094,0.0000668195,0.13695352,0.000025498375,0.000028632141,1.4471523e-7,0.000022692226,0.000031889234,0.8623786,0.000025441079,0.000091760565,0.00030343255],"study_design_scores_gemma":[0.0014228206,0.00011147134,0.13194957,0.000063677355,0.000048925656,0.0000070806336,0.00003703101,0.00018422525,0.8600317,0.00008933108,0.005915586,0.00013854435],"about_ca_topic_score_codex":0.0078089666,"about_ca_topic_score_gemma":0.4666252,"teacher_disagreement_score":0.45881626,"about_ca_system_score_codex":0.00014782832,"about_ca_system_score_gemma":0.0007177898,"threshold_uncertainty_score":0.99879813},"labels":[],"label_agreement":null},{"id":"W7135022893","doi":"10.36584/cjic.2025.004.02.172.178","title":"Regional variation in community bacteremia pathogens in British Columbia, Canada","year":2025,"lang":"","type":"article","venue":"Canadian Journal of Infection Control","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Ciprofloxacin; Salmonella; Population; Antimicrobial; Staphylococcus aureus; Ceftriaxone; Antibiotic resistance; Bacteremia","score_opus":0.007748661347532499,"score_gpt":0.20982841339605274,"score_spread":0.20207975204852024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7135022893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99594223,0.00044574076,0.00042104442,0.0007829059,0.0017615227,0.00024313136,0.00009295393,0.0000013707627,0.0003090799],"genre_scores_gemma":[0.9983513,0.00008840716,0.000021310887,0.000986897,0.00017905784,0.0000059204153,0.00003835997,0.000010419018,0.00031836855],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973949,0.0009674346,0.0010102681,0.00019227403,0.00010679337,0.0003283005],"domain_scores_gemma":[0.99827343,0.00010494646,0.00042247286,0.0002520267,0.00065169355,0.00029541337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014511696,0.00012049864,0.00033111585,0.00023663505,0.00029098048,0.00038446934,0.00018655561,0.0002853076,0.00016260686],"category_scores_gemma":[0.0018631013,0.00022472726,0.00011353748,0.00041470284,0.00007542174,0.00002559805,0.000013887714,0.0007123186,6.295756e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029424858,0.00007316398,0.97366655,0.00005144467,0.000064183754,0.000045278935,0.00010028551,0.00024580464,0.016154446,0.000007403105,0.0026437405,0.0069183004],"study_design_scores_gemma":[0.0020335468,0.00007964316,0.9805038,0.0003218121,0.000031047446,0.000085819745,0.00013312568,0.00013922884,0.00003776728,0.00008464255,0.016390577,0.00015896492],"about_ca_topic_score_codex":0.996679,"about_ca_topic_score_gemma":0.9999884,"teacher_disagreement_score":0.016116679,"about_ca_system_score_codex":0.001294301,"about_ca_system_score_gemma":0.013984379,"threshold_uncertainty_score":0.9916054},"labels":[],"label_agreement":null},{"id":"W7135491054","doi":"","title":"Fatal clostridial enterotoxemia (Clostrium glycolcum) in an ornate nile monitor (Veranus ornarus)","year":2006,"lang":"en","type":"article","venue":"Research at the University of Copenhagen (University of Copenhagen)","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Feces; Clostridium perfringens; Clostridiaceae; Clostridium; Clostridiales","score_opus":0.027617348019416187,"score_gpt":0.27458776408640323,"score_spread":0.24697041606698705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7135491054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97615486,0.00041496646,0.00018669426,0.00019168323,0.00008146953,0.0006971007,0.00016298803,0.000015560543,0.022094652],"genre_scores_gemma":[0.8747884,0.00006109597,0.00024045428,0.000007930651,0.00006717892,2.5811605e-7,0.00031433668,0.000014858545,0.12450547],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99756896,0.000742292,0.00023455729,0.0005341705,0.00046757853,0.0004524584],"domain_scores_gemma":[0.9983596,0.00008887782,0.00019741416,0.00071593554,0.00048019705,0.00015796979],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0010691497,0.0001769065,0.000292883,0.00015678444,0.00051017397,0.000040535106,0.0011643035,0.00020917706,0.033487532],"category_scores_gemma":[0.00008652072,0.00020859975,0.00016177585,0.00048282597,0.00061400305,0.0000788947,0.0007287766,0.00027450875,0.0037064014],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015750928,0.00024506444,0.00029488825,0.00004329577,0.000039640305,0.000062592815,0.00043773977,0.00007585134,0.6962223,0.00002309168,0.300158,0.00082248077],"study_design_scores_gemma":[0.0050293747,0.0010840485,0.09689819,0.00009140397,0.00007025171,0.000017523684,0.008300051,0.0004356795,0.3577322,0.000013629357,0.529762,0.0005655983],"about_ca_topic_score_codex":0.0046383385,"about_ca_topic_score_gemma":0.00847318,"teacher_disagreement_score":0.33849007,"about_ca_system_score_codex":0.00017363987,"about_ca_system_score_gemma":0.0002563446,"threshold_uncertainty_score":0.9970693},"labels":[],"label_agreement":null},{"id":"W7161978682","doi":"10.82308/31992","title":"Rapid identification and classification of «Enterococcus» and «Staphylococcus» by attenuated total reflectance - Fourier transform infrared spectroscopy","year":2018,"lang":"en","type":"dissertation","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Enterococcus faecium; Enterococcus faecalis; Enterococcus; Staphylococcus aureus; Staphylococcus; Agar plate; Incubation; Agar","score_opus":0.012046173441629728,"score_gpt":0.27646956092070896,"score_spread":0.26442338747907923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7161978682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936287,0.00071727217,0.0005877608,0.000093699,0.00027700613,0.0005893431,0.00013385247,0.000027518206,0.0039448794],"genre_scores_gemma":[0.96916646,0.00079255376,0.001080437,0.000038546572,0.00015427258,0.00007573116,0.008684969,0.00004939647,0.019957647],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99823105,0.00006891193,0.00064557686,0.0006917325,0.00016771608,0.00019501105],"domain_scores_gemma":[0.99869233,0.000013614154,0.00043439472,0.00043603903,0.00033584455,0.000087773406],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000281141,0.00027295464,0.00028141282,0.00009413562,0.00012080176,0.00009918703,0.0001377676,0.00040109293,0.00007971087],"category_scores_gemma":[0.00012431022,0.0002845661,0.00007030141,0.00012556279,0.00013707826,0.000019590983,0.00002022019,0.00012084622,0.0000053174117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023907212,0.000056393703,0.00046357684,0.00017541472,0.00005335339,7.98822e-8,0.00023746834,1.933872e-8,0.98650116,0.000023116118,0.0072956206,0.004954699],"study_design_scores_gemma":[0.00064284954,0.00030121746,0.061227545,0.000077730954,0.00008109381,0.0000033706506,0.0005777369,0.00016859891,0.9284278,0.00018960744,0.007909026,0.00039342657],"about_ca_topic_score_codex":0.000015048164,"about_ca_topic_score_gemma":0.00019725601,"teacher_disagreement_score":0.06076397,"about_ca_system_score_codex":0.000020419138,"about_ca_system_score_gemma":0.00006440645,"threshold_uncertainty_score":0.99996066},"labels":[],"label_agreement":null},{"id":"W7162010053","doi":"10.82308/9474","title":"Rapid identification and classification of «Escherichia coli» and «Shigella» by attenuated total reflectance - Fourier transform infrared spectroscopy","year":2017,"lang":"en","type":"dissertation","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Attenuated total reflection; Escherichia coli; Microorganism; Shigella; Fourier transform infrared spectroscopy; Gel electrophoresis; Polymerase chain reaction; Sample preparation; Analytical Chemistry (journal)","score_opus":0.015573026036237171,"score_gpt":0.2865064588583627,"score_spread":0.2709334328221255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7162010053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9862581,0.0008672541,0.0001930806,0.00012145437,0.00028073706,0.0004937585,0.00009064606,0.000021107286,0.011673869],"genre_scores_gemma":[0.93968314,0.0012010369,0.0006066882,0.000021404223,0.00008611114,0.00004646125,0.005933548,0.000038815884,0.05238278],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847895,0.00006504447,0.00052854704,0.0006038889,0.00015369094,0.00016990014],"domain_scores_gemma":[0.9985398,0.000014923097,0.00055756996,0.0005488899,0.00025558504,0.00008323035],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029230473,0.00024322327,0.0002822722,0.000056261943,0.00019542155,0.00015567218,0.00016662489,0.00042760497,0.000061736624],"category_scores_gemma":[0.00022186083,0.0002578489,0.000060826813,0.000064165804,0.000117279094,0.000020156265,0.000015739219,0.00013954556,0.0000034353197],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024920178,0.000043696757,0.00024114082,0.00016081994,0.00004434782,1.1197912e-7,0.00016962616,4.536215e-8,0.9909241,0.00003914779,0.0023371633,0.0057905633],"study_design_scores_gemma":[0.0005491082,0.00020772773,0.10528224,0.000065225606,0.00008332344,0.0000025420072,0.0003396842,0.00021079452,0.8855883,0.00016699344,0.0071348585,0.00036921276],"about_ca_topic_score_codex":0.00003608191,"about_ca_topic_score_gemma":0.00025167872,"teacher_disagreement_score":0.10533585,"about_ca_system_score_codex":0.000014417373,"about_ca_system_score_gemma":0.00009591921,"threshold_uncertainty_score":0.99998736},"labels":[],"label_agreement":null},{"id":"W90860557","doi":"10.1093/jaoac/89.1.115","title":"Comparison of the Compact Dry CF with the Most Probable Number Method (AOAC Official Method 966.24) for Enumeration of Coliform Bacteria in Raw Meats: Performance-Tested MethodSM 110401","year":2006,"lang":"en","type":"article","venue":"Journal of AOAC International","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Enumeration; Food science; Raw milk; Coliform bacteria; Fecal coliform; Mathematics; Bacteria; Biology; Chemistry; Environmental science; Water quality; Ecology","score_opus":0.025686814182655206,"score_gpt":0.35523267491553906,"score_spread":0.32954586073288383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W90860557","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9338561,0.000030329325,0.0641096,0.00061351486,0.00049148494,0.00033934266,0.00003489225,0.0000026004398,0.0005220926],"genre_scores_gemma":[0.9314936,0.0000038489284,0.0678368,0.000054177824,0.00026780006,0.0000073115675,0.00006607686,0.0000128719985,0.0002575505],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983056,0.00029206902,0.0008273216,0.00014871507,0.0002963593,0.00012992634],"domain_scores_gemma":[0.9976506,0.00017694755,0.0010931924,0.00018748919,0.00086928665,0.000022445447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016250382,0.00012885527,0.00030305947,0.00006545711,0.00007880806,0.000046259564,0.00036070243,0.000095472686,0.000043938977],"category_scores_gemma":[0.0002876798,0.00008025761,0.0001374401,0.00015947923,0.0000733408,0.00003375836,0.000042591277,0.00016193179,3.8400273e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00087080017,0.00031542758,0.08348634,0.000042775104,0.00013086373,1.8616834e-7,0.00022883546,0.0064014243,0.90486276,0.00032976817,0.0010977848,0.002233049],"study_design_scores_gemma":[0.0015838109,0.00029246468,0.16461638,0.00011219841,0.00007912823,0.00003562978,0.0002778788,0.013276641,0.81402886,0.00018360962,0.0053780754,0.0001353026],"about_ca_topic_score_codex":0.00009589177,"about_ca_topic_score_gemma":0.00026522018,"teacher_disagreement_score":0.09083386,"about_ca_system_score_codex":0.000058463414,"about_ca_system_score_gemma":0.0001902142,"threshold_uncertainty_score":0.32728103},"labels":[],"label_agreement":null},{"id":"W949541546","doi":"10.1128/jcm.01493-15","title":"Rapid Identification of Bacteria Directly from Positive Blood Cultures by Use of a Serum Separator Tube, Smudge Plate Preparation, and Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Mass spectrometry; Bacilli; Matrix-assisted laser desorption/ionization; Chromatography; Bacteria; Microbiology; Separator (oil production); Matrix (chemical analysis); Blood culture; Desorption; Chemistry; Biology; Analytical Chemistry (journal); Antibiotics","score_opus":0.025518870051515114,"score_gpt":0.32064856637289085,"score_spread":0.29512969632137576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W949541546","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99758863,0.0004236696,0.00078064896,0.00010404029,0.0002561614,0.00015027457,0.0006871757,0.0000039818847,0.0000053866024],"genre_scores_gemma":[0.99397594,0.00022899374,0.00493728,0.000035808338,0.00012617612,0.0000011446127,0.0005321278,0.000010988644,0.00015155645],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99711615,0.00059832033,0.0018521267,0.00025792065,0.0000696076,0.000105858366],"domain_scores_gemma":[0.99635565,0.00020207647,0.002058092,0.00022892088,0.0010602035,0.00009506865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009722764,0.00012985955,0.00052783475,0.00007829146,0.000025499568,0.000025069125,0.0001493387,0.00032231503,0.000047827354],"category_scores_gemma":[0.0016807981,0.00011203124,0.00015403154,0.0001431979,0.00020189169,0.000034379034,0.00004888366,0.00011531638,0.0000024323429],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00080539327,0.0003056164,0.013380347,0.00001739536,0.00026388318,5.097299e-7,0.00008494233,0.0000071948252,0.9836721,0.0000048188276,0.0013060762,0.00015176043],"study_design_scores_gemma":[0.0012705683,0.0007735587,0.07988778,0.00003574886,0.00016683368,0.000031534837,0.000030275984,0.000029317987,0.9170042,0.000042328997,0.0006291518,0.00009870401],"about_ca_topic_score_codex":0.000011330283,"about_ca_topic_score_gemma":0.000007158314,"teacher_disagreement_score":0.06666786,"about_ca_system_score_codex":0.000011601365,"about_ca_system_score_gemma":0.00012418839,"threshold_uncertainty_score":0.4568501},"labels":[],"label_agreement":null},{"id":"W997838368","doi":"10.1017/cbo9780511541506.011","title":"Cell-density-dependent regulation of streptococcal competence","year":2006,"lang":"en","type":"book-chapter","venue":"Cambridge University Press eBooks","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Streptococcus pneumoniae; Christian ministry; Virulence; Phenotype; Microbiology; Biology; Bacteria; Officer; Streptococcus; Subculture (biology); Genetics; Political science; Gene; Law","score_opus":0.014408620164619093,"score_gpt":0.19449125911239734,"score_spread":0.18008263894777826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W997838368","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.040661346,0.000047125686,0.0009475387,0.0000046978566,0.00016334312,0.00037033137,0.00021882448,0.000032182077,0.95755464],"genre_scores_gemma":[0.24937414,0.000012014092,0.00014016248,0.000008057386,0.00009913103,3.1868325e-7,0.00046128762,0.00001966006,0.7498852],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989497,0.000042164243,0.00024628488,0.0004623844,0.00016217351,0.00013729224],"domain_scores_gemma":[0.9987523,0.000014313034,0.0003297379,0.0005562992,0.0002791577,0.00006819043],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009603412,0.00021251323,0.00023622045,0.000062734434,0.00008641109,0.000020760779,0.0002679032,0.00034552932,0.000006067365],"category_scores_gemma":[0.000012397534,0.00027148364,0.00015603601,0.000004934308,0.00016729736,0.000004057318,0.00023486545,0.00014731081,0.000004386015],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000157083,0.00004327409,0.00010955888,0.0001768693,0.00006835887,0.000014353647,0.000014049535,0.000032554635,0.89354056,0.07849144,0.026956161,0.0003957352],"study_design_scores_gemma":[0.0012077737,0.00019205944,0.0033475962,0.000160082,0.00024716186,0.000013550543,0.00003913541,0.0001163464,0.3872807,0.000013888547,0.6065295,0.0008522211],"about_ca_topic_score_codex":0.00014289786,"about_ca_topic_score_gemma":0.000010005198,"teacher_disagreement_score":0.57957333,"about_ca_system_score_codex":0.000044966622,"about_ca_system_score_gemma":0.000083977844,"threshold_uncertainty_score":0.9999737},"labels":[],"label_agreement":null}]}